Psyllid ID: psy14754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKGRCRLL
Secondary Structure (PSIPRED)
cccccccEEEEcccccccEEEHHHHcccccccccccccccccEEEEEEccEEEEEEcEEcccccccccccccccccccEEEEEEEcccccccccccccccHHHHHHcccccEEEEEEcccccccHHHHHHHHHcccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEcccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHHHcHHHHHHHHccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MAAIRKKLVivgdgacgkTCLLIVFskdqfpevyvptVFENYVADIEVDSKQVELALWdtagqedydrlrplsypdtdvILMCFsidspdslenipekwtpevkhfcpnvpiilvgnkkdlrndpntiKELNkmkqepvkpeegRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKGRCRLL
Flexible Loop (DISEMBL)
maairkklvivgdgacgKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDtagqedydrlRPLSYPDTDVILMCFSIDSPDSLENIPEKWtpevkhfcpnvpiilvgnkkdlrndpntikelnkmkqepvkpeEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAalqvkkkkkgrcrll
Low Complexity Region (SEG)
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKGRCRLL
Disordered region (IsUnstruct)
****RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN*********************************INAFAYLECS********************************
Disordered Region (DISOPRED)
**AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI**********VKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA*********GRCRLL
Disordered Region (DISEMBL)
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA**************
Disordered Region (DISPRO)
*AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKGRCRLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
P48148	192	Ras-like GTP-binding prot	yes	N/A	1.0	1.0	0.932	1e-103
Q9PSX7	193	Rho-related GTP-binding p	yes	N/A	1.0	0.994	0.901	6e-98
P01122	192	Ras-like GTP-binding prot	N/A	N/A	1.0	1.0	0.911	5e-97
P61589	193	Transforming protein RhoA	yes	N/A	1.0	0.994	0.880	3e-96
Q9QUI0	193	Transforming protein RhoA	yes	N/A	1.0	0.994	0.880	3e-96
Q5REY6	193	Transforming protein RhoA	yes	N/A	1.0	0.994	0.880	3e-96
P61586	193	Transforming protein RhoA	yes	N/A	1.0	0.994	0.880	3e-96
P61585	193	Transforming protein RhoA	yes	N/A	1.0	0.994	0.880	3e-96
P24406	193	Transforming protein RhoA	yes	N/A	1.0	0.994	0.875	1e-95
Q5RCK9	193	Rho-related GTP-binding p	no	N/A	0.979	0.974	0.882	3e-95

>sp|P48148|RHO1_DROME Ras-like GTP-binding protein Rho1 OS=Drosophila melanogaster GN=Rho1 PE=1 SV=1

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/192 (93%), Positives = 186/192 (96%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MTTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDPNTI++L KMKQEPVKP+EGRAMA+KINAFAYLECSAKSKEGVR+VFETATRAALQ
Sbjct: 121 LRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQ 180

Query: 181 VKKKKKGRCRLL 192
           VKK+KK RC LL
Sbjct: 181 VKKRKKTRCLLL 192

Has a role in regulating actin cytoskeletal organization: required during early development for proper execution of morphogenetic movements of individual cells and groups of cells important for the formation of the embryonic body plan. Plays a role in regulating dorsal closure during embryogenesis. May have a role in eye development.
Drosophila melanogaster (taxid: 7227)

>sp|Q9PSX7|RHOC_CHICK Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1

 Score =  356 bits (913), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 174/193 (90%), Positives = 180/193 (93%), Gaps = 1/193 (0%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +INAF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFEMATRAGLQ 180

Query: 181 VKKKKKGR-CRLL 192
           V+K KK R C LL
Sbjct: 181 VRKNKKRRGCPLL 193

Regulates a signal transduction pathway linking plasma membrane receptors to the assembly of focal adhesions and actin stress fibers. Serves as a microtubule-dependent signal that is required for the myosin contractile ring formation during cell cycle cytokinesis. Regulates apical junction formation in bronchial epithelial cells.

Gallus gallus (taxid: 9031)

>sp|P01122|RHO_APLCA Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1

 Score =  353 bits (905), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 175/192 (91%), Positives = 186/192 (96%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV+HFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPV+PE+GRAMA+KINA++YLECSAK+KEGVR+VFETATRAALQ
Sbjct: 121 LRNDESTKRELMKMKQEPVRPEDGRAMAEKINAYSYLECSAKTKEGVRDVFETATRAALQ 180

Query: 181 VKKKKKGRCRLL 192
           VKKKKKG C +L
Sbjct: 181 VKKKKKGGCVVL 192

Aplysia californica (taxid: 6500)

>sp|P61589|RHOA_RAT Transforming protein RhoA OS=Rattus norvegicus GN=Rhoa PE=1 SV=1

 Score =  350 bits (899), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 181 ARRGKKKSGCLIL 193

Regulates a signal transduction pathway linking plasma membrane receptors to the assembly of focal adhesions and actin stress fibers. Involved in a microtubule-dependent signal that is required for the myosin contractile ring formation during cell cycle cytokinesis. Plays an essential role in cleavage furrow formation. Required for the apical junction formation of keratinocyte cell-cell adhesion. May be an activator of PLCE1. Activated by ARHGEF2, which promotes the exchange of GDP for GTP. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization.

Rattus norvegicus (taxid: 10116)

>sp|Q9QUI0|RHOA_MOUSE Transforming protein RhoA OS=Mus musculus GN=Rhoa PE=1 SV=1

 Score =  350 bits (899), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 181 ARRGKKKSGCLIL 193

Regulates a signal transduction pathway linking plasma membrane receptors to the assembly of focal adhesions and actin stress fibers. Involved in a microtubule-dependent signal that is required for the myosin contractile ring formation during cell cycle cytokinesis. Plays an essential role in cleavage furrow formation. May be an activator of PLCE1. Activated by ARHGEF2, which promotes the exchange of GDP for GTP. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization (By similarity). Required for the apical junction formation of keratinocyte cell-cell adhesion.

Mus musculus (taxid: 10090)

>sp|Q5REY6|RHOA_PONAB Transforming protein RhoA OS=Pongo abelii GN=RHOA PE=2 SV=2

 Score =  350 bits (898), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 181 ARRGKKKSGCLVL 193

Regulates a signal transduction pathway linking plasma membrane receptors to the assembly of focal adhesions and actin stress fibers. Involved in a microtubule-dependent signal that is required for the myosin contractile ring formation during cell cycle cytokinesis. Plays an essential role in cleavage furrow formation. Required for the apical junction formation of keratinocyte cell-cell adhesion. May be an activator of PLCE1. Activated by ARHGEF2, which promotes the exchange of GDP for GTP. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization.

Pongo abelii (taxid: 9601)

>sp|P61586|RHOA_HUMAN Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1

 Score =  350 bits (898), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 181 ARRGKKKSGCLVL 193

Regulates a signal transduction pathway linking plasma membrane receptors to the assembly of focal adhesions and actin stress fibers. Involved in a microtubule-dependent signal that is required for the myosin contractile ring formation during cell cycle cytokinesis. Plays an essential role in cleavage furrow formation. Required for the apical junction formation of keratinocyte cell-cell adhesion. Serves as a target for the yopT cysteine peptidase from Yersinia pestis, vector of the plague, and Yersinia pseudotuberculosis, which causes gastrointestinal disorders. Stimulates PKN2 kinase activity. May be an activator of PLCE1. Activated by ARHGEF2, which promotes the exchange of GDP for GTP. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization.

Homo sapiens (taxid: 9606)

>sp|P61585|RHOA_BOVIN Transforming protein RhoA OS=Bos taurus GN=RHOA PE=1 SV=1

 Score =  350 bits (898), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 181 ARRGKKKSGCLVL 193

Regulates a signal transduction pathway linking plasma membrane receptors to the assembly of focal adhesions and actin stress fibers. Involved in a microtubule-dependent signal that is required for the myosin contractile ring formation during cell cycle cytokinesis. Plays an essential role in cleavage furrow formation. Required for the apical junction formation of keratinocyte cell-cell adhesion. May be an activator of PLCE1. Activated by ARHGEF2, which promotes the exchange of GDP for GTP. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization.

Bos taurus (taxid: 9913)

>sp|P24406|RHOA_CANFA Transforming protein RhoA OS=Canis familiaris GN=RHOA PE=2 SV=1

 Score =  348 bits (894), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/193 (87%), Positives = 178/193 (92%), Gaps = 1/193 (0%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKP EGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPTEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 181 ARRGKKKSGCLVL 193

Regulates a signal transduction pathway linking plasma membrane receptors to the assembly of focal adhesions and actin stress fibers. Involved in a microtubule-dependent signal that is required for the myosin contractile ring formation during cell cycle cytokinesis. Plays an essential role in cleavage furrow formation. Required for the apical junction formation of keratinocyte cell-cell adhesion. May be an activator of PLCE1. Activated by ARHGEF2, which promotes the exchange of GDP for GTP. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization.

Canis familiaris (taxid: 9615)

>sp|Q5RCK9|RHOC_PONAB Rho-related GTP-binding protein RhoC OS=Pongo abelii GN=RHOC PE=2 SV=1

 Score =  347 bits (890), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 166/188 (88%), Positives = 175/188 (93%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LR D +T +EL KMKQEPV+ EEGR MA +I+AF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180

Query: 181 VKKKKKGR 188
           V+K K+ R
Sbjct: 181 VRKNKRRR 188

Regulates a signal transduction pathway linking plasma membrane receptors to the assembly of focal adhesions and actin stress fibers. Serves as a microtubule-dependent signal that is required for the myosin contractile ring formation during cell cycle cytokinesis. Regulates apical junction formation in bronchial epithelial cells.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
322789052	233	hypothetical protein SINV_15432 [Solenop	1.0	0.824	0.979	1e-106
345481856	236	PREDICTED: ras-like GTP-binding protein	1.0	0.813	0.973	1e-106
240848701	192	transforming protein Rho-like [Acyrthosi	1.0	1.0	0.968	1e-105
156544950	192	PREDICTED: ras-like GTP-binding protein	1.0	1.0	0.973	1e-105
340709103	264	PREDICTED: LOW QUALITY PROTEIN: ras-like	1.0	0.727	0.973	1e-105
328791826	242	PREDICTED: Ras-like GTP-binding protein	1.0	0.793	0.973	1e-105
380028480	242	PREDICTED: ras-like GTP-binding protein	1.0	0.793	0.973	1e-105
121543857	192	putative Rho1 [Maconellicoccus hirsutus]	1.0	1.0	0.973	1e-105
383864795	242	PREDICTED: ras-like GTP-binding protein	1.0	0.793	0.973	1e-105
389608691	192	GTPase rho protein [Papilio xuthus]	1.0	1.0	0.953	1e-103

>gi|322789052|gb|EFZ14510.1| hypothetical protein SINV_15432 [Solenopsis invicta]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/192 (97%), Positives = 191/192 (99%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 42  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 101

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 102 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 161

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDPNTIKEL+KMKQEPVKPEEGRAMA+KINAFAYLECSAKSKEGVREVFETATRAALQ
Sbjct: 162 LRNDPNTIKELSKMKQEPVKPEEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ 221

Query: 181 VKKKKKGRCRLL 192
           VKKKK+GRCRLL
Sbjct: 222 VKKKKRGRCRLL 233

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481856|ref|XP_003424472.1| PREDICTED: ras-like GTP-binding protein Rho1 [Nasonia vitripennis]

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/192 (97%), Positives = 190/192 (98%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 45  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 104

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 105 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 164

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDP+TIKEL KMKQEPVKPEEGRAMA+KI+AFAYLECSAKSKEGVREVFETATRAALQ
Sbjct: 165 LRNDPSTIKELGKMKQEPVKPEEGRAMAEKISAFAYLECSAKSKEGVREVFETATRAALQ 224

Query: 181 VKKKKKGRCRLL 192
           VKKKKKGRCRLL
Sbjct: 225 VKKKKKGRCRLL 236

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848701|ref|NP_001155513.1| transforming protein Rho-like [Acyrthosiphon pisum] gi|239792402|dbj|BAH72550.1| ACYPI003261 [Acyrthosiphon pisum]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/192 (96%), Positives = 191/192 (99%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDPNTI+EL+KMKQEPV+PEEGRAMA+KINAFAYLECSAKSKEGVREVFET+TRAALQ
Sbjct: 121 LRNDPNTIRELSKMKQEPVRPEEGRAMAEKINAFAYLECSAKSKEGVREVFETSTRAALQ 180

Query: 181 VKKKKKGRCRLL 192
           VKKKKKGRCRLL
Sbjct: 181 VKKKKKGRCRLL 192

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544950|ref|XP_001607487.1| PREDICTED: ras-like GTP-binding protein Rho1 isoform 1 [Nasonia vitripennis] gi|156544952|ref|XP_001607493.1| PREDICTED: ras-like GTP-binding protein Rho1 isoform 2 [Nasonia vitripennis]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/192 (97%), Positives = 190/192 (98%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDP+TIKEL KMKQEPVKPEEGRAMA+KI+AFAYLECSAKSKEGVREVFETATRAALQ
Sbjct: 121 LRNDPSTIKELGKMKQEPVKPEEGRAMAEKISAFAYLECSAKSKEGVREVFETATRAALQ 180

Query: 181 VKKKKKGRCRLL 192
           VKKKKKGRCRLL
Sbjct: 181 VKKKKKGRCRLL 192

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709103|ref|XP_003393153.1| PREDICTED: LOW QUALITY PROTEIN: ras-like GTP-binding protein Rho1-like [Bombus terrestris] gi|350419302|ref|XP_003492137.1| PREDICTED: LOW QUALITY PROTEIN: ras-like GTP-binding protein Rho1-like [Bombus impatiens]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/192 (97%), Positives = 190/192 (98%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 73  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 132

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 133 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 192

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDPNTIKEL+KMKQEPVKPEEGRAMA+KINAFAYLECSAKSKEG+REVFETATRAALQ
Sbjct: 193 LRNDPNTIKELSKMKQEPVKPEEGRAMAEKINAFAYLECSAKSKEGIREVFETATRAALQ 252

Query: 181 VKKKKKGRCRLL 192
           VKKKKKGRC LL
Sbjct: 253 VKKKKKGRCWLL 264

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791826|ref|XP_393401.2| PREDICTED: Ras-like GTP-binding protein Rho1 isoform 1 [Apis mellifera]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/192 (97%), Positives = 190/192 (98%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 51  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 110

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 111 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 170

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDPNTIKEL+KMKQEPVKPEEGRAMA+KINAFAYLECSAKSKEG+REVFETATRAALQ
Sbjct: 171 LRNDPNTIKELSKMKQEPVKPEEGRAMAEKINAFAYLECSAKSKEGIREVFETATRAALQ 230

Query: 181 VKKKKKGRCRLL 192
           VKKKKKGRC LL
Sbjct: 231 VKKKKKGRCWLL 242

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028480|ref|XP_003697928.1| PREDICTED: ras-like GTP-binding protein Rho1-like [Apis florea]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/192 (97%), Positives = 190/192 (98%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 51  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 110

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 111 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 170

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDPNTIKEL+KMKQEPVKPEEGRAMA+KINAFAYLECSAKSKEG+REVFETATRAALQ
Sbjct: 171 LRNDPNTIKELSKMKQEPVKPEEGRAMAEKINAFAYLECSAKSKEGIREVFETATRAALQ 230

Query: 181 VKKKKKGRCRLL 192
           VKKKKKGRC LL
Sbjct: 231 VKKKKKGRCWLL 242

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543857|gb|ABM55593.1| putative Rho1 [Maconellicoccus hirsutus]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/192 (97%), Positives = 189/192 (98%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDP TIKEL KMKQEPVKPEEGRAMA+KINAFAYLECSAKSKEGVREVFET+TRAALQ
Sbjct: 121 LRNDPVTIKELAKMKQEPVKPEEGRAMAEKINAFAYLECSAKSKEGVREVFETSTRAALQ 180

Query: 181 VKKKKKGRCRLL 192
           VKKKKKGRCRLL
Sbjct: 181 VKKKKKGRCRLL 192

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864795|ref|XP_003707863.1| PREDICTED: ras-like GTP-binding protein Rho1-like [Megachile rotundata]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/192 (97%), Positives = 190/192 (98%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 51  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 110

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 111 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 170

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDPNTIKEL+KMKQEPVKPEEGRAMA+KINAFAYLECSAKSKEG+REVFETATRAALQ
Sbjct: 171 LRNDPNTIKELSKMKQEPVKPEEGRAMAEKINAFAYLECSAKSKEGIREVFETATRAALQ 230

Query: 181 VKKKKKGRCRLL 192
           VKKKKKGRC LL
Sbjct: 231 VKKKKKGRCWLL 242

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608691|dbj|BAM17955.1| GTPase rho protein [Papilio xuthus]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/192 (95%), Positives = 186/192 (96%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRNDP TI EL KMKQEPVKP+EGRAMA+KINAFAYLECSAKSKEGVREVFETATRAALQ
Sbjct: 121 LRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ 180

Query: 181 VKKKKKGRCRLL 192
           VKKKKK RC LL
Sbjct: 181 VKKKKKTRCSLL 192

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
FB|FBgn0014020	192	Rho1 "Rho1" [Drosophila melano	1.0	1.0	0.932	2e-95
ZFIN|ZDB-GENE-040426-2150	193	rhoaa "ras homolog gene family	1.0	0.994	0.911	1.3e-91
WB|WBGene00004357	192	rho-1 [Caenorhabditis elegans	1.0	1.0	0.875	5.7e-91
UNIPROTKB|Q22038	192	rho-1 "Ras-like GTP-binding pr	1.0	1.0	0.875	5.7e-91
UNIPROTKB|Q9PSX7	193	RHOC "Rho-related GTP-binding	1.0	0.994	0.901	1.2e-90
ZFIN|ZDB-GENE-040426-2665	193	rhoac "ras homolog gene family	1.0	0.994	0.901	1.5e-90
ZFIN|ZDB-GENE-040718-144	193	rhoad "ras homolog gene family	1.0	0.994	0.891	4e-90
UNIPROTKB|F1NNU0	193	RHOC "Rho-related GTP-binding	1.0	0.994	0.896	1.1e-89
UNIPROTKB|F1NWR3	200	RHOC "Rho-related GTP-binding	1.0	0.96	0.896	1.1e-89
ZFIN|ZDB-GENE-060825-41	193	zgc:153713 "zgc:153713" [Danio	1.0	0.994	0.891	1.7e-89

FB|FBgn0014020 Rho1 "Rho1" [Drosophila melanogaster (taxid:7227)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 179/192 (93%), Positives = 186/192 (96%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             M  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct:     1 MTTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct:    61 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LRNDPNTI++L KMKQEPVKP+EGRAMA+KINAFAYLECSAKSKEGVR+VFETATRAALQ
Sbjct:   121 LRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQ 180

Query:   181 VKKKKKGRCRLL 192
             VKK+KK RC LL
Sbjct:   181 VKKRKKTRCLLL 192

GO:0007377 "germ-band extension" evidence=IMP

GO:0007370 "ventral furrow formation" evidence=IMP

GO:0010004 "gastrulation involving germ band extension" evidence=IMP

GO:0007374 "posterior midgut invagination" evidence=IMP

GO:0003924 "GTPase activity" evidence=ISS;NAS;TAS

GO:0007369 "gastrulation" evidence=NAS

GO:0016318 "ommatidial rotation" evidence=NAS;TAS

GO:0007391 "dorsal closure" evidence=IMP;TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=TAS

GO:0007254 "JNK cascade" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007405 "neuroblast proliferation" evidence=IMP

GO:0035317 "imaginal disc-derived wing hair organization" evidence=IGI;IMP

GO:0019900 "kinase binding" evidence=IPI

GO:0030036 "actin cytoskeleton organization" evidence=IMP;TAS

GO:0030239 "myofibril assembly" evidence=IMP

GO:0016203 "muscle attachment" evidence=IMP

GO:0035149 "lumen formation, open tracheal system" evidence=IMP;TAS

GO:0046664 "dorsal closure, amnioserosa morphology change" evidence=IMP

GO:0007010 "cytoskeleton organization" evidence=TAS

GO:0007164 "establishment of tissue polarity" evidence=NAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0007349 "cellularization" evidence=IMP;TAS

GO:0007395 "dorsal closure, spreading of leading edge cells" evidence=IMP

GO:0046663 "dorsal closure, leading edge cell differentiation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0042060 "wound healing" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP;NAS

GO:0016055 "Wnt receptor signaling pathway" evidence=NAS

GO:0001736 "establishment of planar polarity" evidence=NAS;TAS

GO:0008347 "glial cell migration" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=TAS

GO:0007015 "actin filament organization" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0008354 "germ cell migration" evidence=TAS

GO:0035147 "branch fusion, open tracheal system" evidence=TAS

GO:0050770 "regulation of axonogenesis" evidence=IGI

GO:0006897 "endocytosis" evidence=IMP

GO:0035099 "hemocyte migration" evidence=IMP

GO:0035298 "regulation of Malpighian tubule size" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0045184 "establishment of protein localization" evidence=IMP

GO:0035277 "spiracle morphogenesis, open tracheal system" evidence=IMP

GO:0035006 "melanization defense response" evidence=IMP

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IGI

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IGI

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

GO:0030589 "pseudocleavage involved in syncytial blastoderm formation" evidence=IMP

GO:0090254 "cell elongation involved in imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0051493 "regulation of cytoskeleton organization" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0070451 "cell hair" evidence=IDA

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IGI

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

ZFIN|ZDB-GENE-040426-2150 rhoaa "ras homolog gene family, member Aa" [Danio rerio (taxid:7955)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 176/193 (91%), Positives = 181/193 (93%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT
Sbjct:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LRND +T +EL KMKQEPVKPEEGR MA +INAF YLECSAK+KEGVREVFE ATRAALQ
Sbjct:   121 LRNDEHTRRELQKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFEMATRAALQ 180

Query:   181 VKKK-KKGRCRLL 192
              KK+ KK  C LL
Sbjct:   181 AKKRGKKNACALL 193

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00004357 rho-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 168/192 (87%), Positives = 184/192 (95%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             MAAIRKKLVIVGDGACGKTCLLIVFSKDQFP+VYVPTVFENYVADIEVD KQVELALWDT
Sbjct:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDT 60

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV+HFCPNVPIILVGNK+D
Sbjct:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRD 120

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LR+DP T++EL KMKQEPVKPE+GRA+A++I AFAYLECSAK+K+G+REVFE AT+AALQ
Sbjct:   121 LRSDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAYLECSAKTKDGIREVFEKATQAALQ 180

Query:   181 VKKKKKGRCRLL 192
              KKKKK +C +L
Sbjct:   181 QKKKKKSKCMIL 192

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0014057 "positive regulation of acetylcholine secretion" evidence=IMP

GO:0032970 "regulation of actin filament-based process" evidence=IGI;IMP

GO:0019901 "protein kinase binding" evidence=IPI

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0032154 "cleavage furrow" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0000915 "cytokinesis, actomyosin contractile ring assembly" evidence=IMP

UNIPROTKB|Q22038 rho-1 "Ras-like GTP-binding protein rhoA" [Caenorhabditis elegans (taxid:6239)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 168/192 (87%), Positives = 184/192 (95%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             MAAIRKKLVIVGDGACGKTCLLIVFSKDQFP+VYVPTVFENYVADIEVD KQVELALWDT
Sbjct:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDT 60

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV+HFCPNVPIILVGNK+D
Sbjct:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRD 120

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LR+DP T++EL KMKQEPVKPE+GRA+A++I AFAYLECSAK+K+G+REVFE AT+AALQ
Sbjct:   121 LRSDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAYLECSAKTKDGIREVFEKATQAALQ 180

Query:   181 VKKKKKGRCRLL 192
              KKKKK +C +L
Sbjct:   181 QKKKKKSKCMIL 192

GO:0006184 "GTP catabolic process" evidence=IDA

UNIPROTKB|Q9PSX7 RHOC "Rho-related GTP-binding protein RhoC" [Gallus gallus (taxid:9031)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 174/193 (90%), Positives = 180/193 (93%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LRND +T +EL KMKQEPVKPEEGR MA +INAF YLECSAK+KEGVREVFE ATRA LQ
Sbjct:   121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFEMATRAGLQ 180

Query:   181 VKKKKKGR-CRLL 192
             V+K KK R C LL
Sbjct:   181 VRKNKKRRGCPLL 193

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0033205 "cell cycle cytokinesis" evidence=ISS

GO:0032154 "cleavage furrow" evidence=ISS

GO:0043297 "apical junction assembly" evidence=ISS

ZFIN|ZDB-GENE-040426-2665 rhoac "ras homolog gene family, member Ac" [Danio rerio (taxid:7955)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 174/193 (90%), Positives = 181/193 (93%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT
Sbjct:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LRND +T +EL KMKQEPVKPEEGR MA +INAF YLECSAK+K+GVREVFE ATRAALQ
Sbjct:   121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKDGVREVFEMATRAALQ 180

Query:   181 VKKK-KKGRCRLL 192
              +K+ KK  C LL
Sbjct:   181 ARKRGKKSGCLLL 193

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040718-144 rhoad "ras homolog gene family, member Ad" [Danio rerio (taxid:7955)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 172/193 (89%), Positives = 182/193 (94%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVDSKQVELALWDT
Sbjct:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDSKQVELALWDT 60

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct:    61 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LRND +T +EL KMKQEPVKPEEGR MA +I+AF YLECSAK+K+GVREVFE ATRAALQ
Sbjct:   121 LRNDEHTRRELIKMKQEPVKPEEGRDMANRISAFGYLECSAKTKDGVREVFEMATRAALQ 180

Query:   181 VKKKKK-GRCRLL 192
             V+K+KK   C LL
Sbjct:   181 VRKRKKRSGCLLL 193

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NNU0 RHOC "Rho-related GTP-binding protein RhoC" [Gallus gallus (taxid:9031)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 173/193 (89%), Positives = 179/193 (92%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFSIDSP SLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPYSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LRND +T +EL KMKQEPVKPEEGR MA +INAF YLECSAK+KEGVREVFE ATRA LQ
Sbjct:   121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFEMATRAGLQ 180

Query:   181 VKKKKKGR-CRLL 192
             V+K KK R C LL
Sbjct:   181 VRKNKKRRGCPLL 193

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0033205 "cell cycle cytokinesis" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043297 "apical junction assembly" evidence=IEA

UNIPROTKB|F1NWR3 RHOC "Rho-related GTP-binding protein RhoC" [Gallus gallus (taxid:9031)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 173/193 (89%), Positives = 179/193 (92%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct:     8 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 67

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFSIDSP SLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct:    68 AGQEDYDRLRPLSYPDTDVILMCFSIDSPYSLENIPEKWTPEVKHFCPNVPIILVGNKKD 127

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LRND +T +EL KMKQEPVKPEEGR MA +INAF YLECSAK+KEGVREVFE ATRA LQ
Sbjct:   128 LRNDEHTRRELAKMKQEPVKPEEGRDMANRINAFGYLECSAKTKEGVREVFEMATRAGLQ 187

Query:   181 VKKKKKGR-CRLL 192
             V+K KK R C LL
Sbjct:   188 VRKNKKRRGCPLL 200

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0033205 "cell cycle cytokinesis" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043297 "apical junction assembly" evidence=IEA

ZFIN|ZDB-GENE-060825-41 zgc:153713 "zgc:153713" [Danio rerio (taxid:7955)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 172/193 (89%), Positives = 180/193 (93%)

Query:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
             MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT
Sbjct:     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60

Query:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
             AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct:    61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120

Query:   121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAKSK+GVREVFE ATRAALQ
Sbjct:   121 LRNDEHTRRELFKMKQEPVKPEEGRDMANRICAFGYMECSAKSKDGVREVFEMATRAALQ 180

Query:   181 VKK-KKKGRCRLL 192
              +K KK  +C L+
Sbjct:   181 ARKGKKSSKCLLV 193

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34144	RAC1A_DICDI	No assigned EC number	0.5612	0.9895	0.9793	no	N/A
P34146	RAC1C_DICDI	No assigned EC number	0.5692	0.9895	0.9844	no	N/A
Q10133	RHO2_SCHPO	No assigned EC number	0.5977	0.9322	0.895	no	N/A
P63001	RAC1_MOUSE	No assigned EC number	0.5846	0.9843	0.9843	no	N/A
Q62159	RHOC_MOUSE	No assigned EC number	0.8829	0.9791	0.9740	no	N/A
P34148	RACB_DICDI	No assigned EC number	0.5340	0.9687	0.9538	yes	N/A
Q6RUV5	RAC1_RAT	No assigned EC number	0.5846	0.9843	0.9843	no	N/A
Q9QUI0	RHOA_MOUSE	No assigned EC number	0.8808	1.0	0.9948	yes	N/A
Q9HF54	RHO1_ASHGO	No assigned EC number	0.6795	0.9427	0.8743	no	N/A
Q9HE04	RHO5_SCHPO	No assigned EC number	0.6887	0.9843	0.945	no	N/A
P40792	RAC1_DROME	No assigned EC number	0.5618	0.9895	0.9895	no	N/A
P62998	RAC1_BOVIN	No assigned EC number	0.5846	0.9843	0.9843	no	N/A
P62999	RAC1_CANFA	No assigned EC number	0.5846	0.9843	0.9843	no	N/A
Q03206	RAC1_CAEEL	No assigned EC number	0.5440	0.9895	0.9947	no	N/A
Q9C3Y4	RHOA_EMENI	No assigned EC number	0.7357	1.0	0.9948	yes	N/A
Q874R1	RHO4_SCHPO	No assigned EC number	0.6257	0.875	0.8275	no	N/A
P61586	RHOA_HUMAN	No assigned EC number	0.8808	1.0	0.9948	yes	N/A
P61585	RHOA_BOVIN	No assigned EC number	0.8808	1.0	0.9948	yes	N/A
Q5RCK9	RHOC_PONAB	No assigned EC number	0.8829	0.9791	0.9740	no	N/A
P60763	RAC3_HUMAN	No assigned EC number	0.5810	0.9218	0.9218	no	N/A
Q1RMJ6	RHOC_BOVIN	No assigned EC number	0.8829	0.9791	0.9740	no	N/A
Q9TU25	RAC2_BOVIN	No assigned EC number	0.5618	0.9895	0.9895	no	N/A
Q8CFN2	CDC42_RAT	No assigned EC number	0.5401	0.9687	0.9738	no	N/A
Q05144	RAC2_MOUSE	No assigned EC number	0.5670	0.9895	0.9895	no	N/A
P01122	RHO_APLCA	No assigned EC number	0.9114	1.0	1.0	N/A	N/A
P61589	RHOA_RAT	No assigned EC number	0.8808	1.0	0.9948	yes	N/A
Q8J212	RHO1_KLULA	No assigned EC number	0.6775	0.9531	0.8798	yes	N/A
P15153	RAC2_HUMAN	No assigned EC number	0.5670	0.9895	0.9895	no	N/A
O42825	RHO1_CANAL	No assigned EC number	0.7333	0.9375	0.9090	N/A	N/A
P06780	RHO1_YEAST	No assigned EC number	0.7243	0.9635	0.8851	yes	N/A
O88931	RAC2_CAVPO	No assigned EC number	0.5515	0.9895	0.9895	no	N/A
P48554	RAC2_DROME	No assigned EC number	0.5618	0.9895	0.9895	no	N/A
P08134	RHOC_HUMAN	No assigned EC number	0.8829	0.9791	0.9740	no	N/A
P84095	RHOG_HUMAN	No assigned EC number	0.5721	0.9687	0.9738	no	N/A
Q5REY6	RHOA_PONAB	No assigned EC number	0.8808	1.0	0.9948	yes	N/A
P84097	RHOG_CRICR	No assigned EC number	0.5721	0.9687	0.9738	N/A	N/A
P84096	RHOG_MOUSE	No assigned EC number	0.5721	0.9687	0.9738	no	N/A
P62745	RHOB_HUMAN	No assigned EC number	0.8306	0.9843	0.9642	no	N/A
P62747	RHOB_RAT	No assigned EC number	0.8306	0.9843	0.9642	no	N/A
P62746	RHOB_MOUSE	No assigned EC number	0.8306	0.9843	0.9642	no	N/A
P48148	RHO1_DROME	No assigned EC number	0.9322	1.0	1.0	yes	N/A
Q9PSX7	RHOC_CHICK	No assigned EC number	0.9015	1.0	0.9948	yes	N/A
Q3ZBW5	RHOB_BOVIN	No assigned EC number	0.8306	0.9843	0.9642	no	N/A
P22122	RHO_DIPOM	No assigned EC number	0.8445	0.9947	0.9947	N/A	N/A
Q09914	RHO1_SCHPO	No assigned EC number	0.7070	0.9843	0.9356	yes	N/A
P63000	RAC1_HUMAN	No assigned EC number	0.5846	0.9843	0.9843	no	N/A
P60764	RAC3_MOUSE	No assigned EC number	0.5810	0.9218	0.9218	no	N/A
Q22038	RHO1_CAEEL	No assigned EC number	0.875	1.0	1.0	yes	N/A
P24406	RHOA_CANFA	No assigned EC number	0.8756	1.0	0.9948	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	192
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-141
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-126
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-110
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-105
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	8e-85
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	8e-84
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-83
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-83
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-80
pfam00071	162	pfam00071, Ras, Ras family	7e-78
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	4e-74
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	4e-70
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	8e-70
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-68
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-67
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-62
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-61
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	6e-52
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-47
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-46
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-41
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	5e-39
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-36
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-36
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	7e-36
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-31
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-31
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-31
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-29
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-29
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-29
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	7e-29
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-27
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	5e-27
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	6e-27
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-26
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-26
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-26
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-25
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-25
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-25
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-25
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-25
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	5e-25
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-24
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-24
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-24
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	8e-24
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	8e-24
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	8e-23
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-22
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	9e-22
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-21
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-21
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-20
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	7e-20
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	9e-20
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-19
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-19
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-18
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	7e-18
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-17
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-17
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-17
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-17
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-17
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-17
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-17
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-16
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-16
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-16
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	5e-16
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	5e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-14
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-14
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-14
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	7e-14
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-13
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-13
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-13
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-12
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-10
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-10
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	8e-10
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-09
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	8e-09
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-08
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-07
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-05
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	2e-04
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-04
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	6e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	9e-04
PRK13796	365	PRK13796, PRK13796, GTPase YqeH; Provisional	0.002
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	0.002
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	0.003

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  391 bits (1005), Expect = e-141
 Identities = 165/175 (94%), Positives = 169/175 (96%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDTAGQE
Sbjct: 1   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 60

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
           DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND
Sbjct: 61  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
            +TI+EL KMKQEPVKPEEGRAMA+KI AF YLECSAK+KEGVREVFE ATRAAL
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  351 bits (902), Expect = e-126
 Identities = 128/173 (73%), Positives = 147/173 (84%)

Query: 8   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67
           LV+VGDGA GKTCLLIV++ + FPE YVPTVFENY AD+EVD K VEL LWDTAGQEDYD
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 68  RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT 127
           RLRPLSYPDTDV L+CFS+DSP S EN+ EKW PEVKHFCPNVPIILVG K DLRND +T
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKST 120

Query: 128 IKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           ++EL+K KQEPV  E+G+A+A++I A  YLECSA ++EGVREVFE A RAAL 
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  312 bits (801), Expect = e-110
 Identities = 111/171 (64%), Positives = 140/171 (81%), Gaps = 1/171 (0%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY A++ VD KQV L LWDTAGQE+Y
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEY 61

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+DSP S EN+  KW PE+KH+CPNVPIILVG K DLR+D N
Sbjct: 62  DRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDGN 121

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           T+K+L K KQ+P+ PEEG  +A++I A  Y+ECSA ++EG++EVF+ A RA
Sbjct: 122 TLKKLEK-KQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  299 bits (768), Expect = e-105
 Identities = 115/196 (58%), Positives = 146/196 (74%), Gaps = 7/196 (3%)

Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DSKQVELALWDTAG 62
           ++ K+V+VGDG CGKTCLL+V+++  FPE YVPTVFENYV  ++V + K +ELALWDTAG
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAG 61

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QEDYDRLRPLSYPD DVIL+C+S+D+P SL+N+ +KW PEV HFCP  PI+LVG K DLR
Sbjct: 62  QEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLR 121

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL--- 179
            D N++ +L     EPV PE+G ++A+ I A AY+ECSAK  E V EVF+ A   AL   
Sbjct: 122 KDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKS 181

Query: 180 ---QVKKKKKGRCRLL 192
                KKKKK +C +L
Sbjct: 182 GRAARKKKKKKKCVIL 197

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  247 bits (633), Expect = 8e-85
 Identities = 103/171 (60%), Positives = 129/171 (75%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 63  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 122

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA
Sbjct: 123 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 173

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  245 bits (626), Expect = 8e-84
 Identities = 101/176 (57%), Positives = 133/176 (75%), Gaps = 1/176 (0%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           R K+V+VGD  CGKT LL VF+KD FPE YVPTVFENY A  EVD +++EL+LWDT+G  
Sbjct: 1   RCKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSP 60

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
            YD +RPLSYPD+D +L+CF I  P++L+++ +KW  EV+ FCPN P++LVG K DLR D
Sbjct: 61  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTD 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAAL 179
            +T+ EL+  +Q PV  E+GR +A++I A AY+ECSAK+ E  VR+VFE AT A L
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  245 bits (626), Expect = 1e-83
 Identities = 108/187 (57%), Positives = 138/187 (73%), Gaps = 1/187 (0%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP+ Y+PTVF+NY A   VD + V L LWDTAGQE+Y
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY 64

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLR LSYP T+V ++CFSI SP S EN+  KW PEV H CPNVPI+LVG KKDLRND +
Sbjct: 65  DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD 124

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           T+K+L +  Q P+ P++G A+A++I+A  YLECSA +++GV+EVF  A RA L     K 
Sbjct: 125 TLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIKD 184

Query: 187 GR-CRLL 192
            + C LL
Sbjct: 185 TKSCVLL 191

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  244 bits (625), Expect = 2e-83
 Identities = 109/189 (57%), Positives = 133/189 (70%), Gaps = 6/189 (3%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           R+KLVIVGDGACGKT LL VF+  +FPE Y PTVFENYV D  VD K V+LALWDTAGQE
Sbjct: 1   RRKLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQE 60

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
           +Y+RLRPLSY    VIL+ F+ID+PDSLEN+  KW  EV+ +CPNVP+ILVG KKDLR +
Sbjct: 61  EYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQE 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK- 183
                  N    E V  ++ + +A+ I A  Y+ECSA + EGV +VFE ATRAAL V+K 
Sbjct: 121 AVAKG--NYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVRKS 178

Query: 184 ---KKKGRC 189
              +    C
Sbjct: 179 GKEEPGANC 187

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  237 bits (606), Expect = 1e-80
 Identities = 98/177 (55%), Positives = 122/177 (68%), Gaps = 4/177 (2%)

Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           +K+V++GDGACGKT LL VF++  FP+VY PTVFENY+ DI VD   VEL+LWDTAGQE+
Sbjct: 1   RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +DRLR LSY DT VI++CFS+D+PDSLEN+  KW  E++H CP V ++LV  K DLR   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPR 120

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
           N               EEG A+A++INA  YLECSAK   GV E F  A R AL  +
Sbjct: 121 NERDRGTHTISY----EEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNAR 173

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  229 bits (586), Expect = 7e-78
 Identities = 78/176 (44%), Positives = 104/176 (59%), Gaps = 16/176 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KLV+VGDG  GK+ LLI F++++FPE Y+PT+  + Y   IEVD K V+L +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
           +  LRPL Y      L+ + I S DS EN+  KW  E+      NVPI+LVGNK DL + 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVK-KWLEEILRHADENVPIVLVGNKCDLED- 118

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                      Q  V  EEG A+A+++    ++E SAK+ E V E FE   R  L+
Sbjct: 119 -----------QRVVSTEEGEALAKELGLP-FMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  220 bits (562), Expect = 4e-74
 Identities = 96/173 (55%), Positives = 128/173 (73%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 63  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 122

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L K KQ+P+ PE G  +A+ + A  Y+ECSA +++G++ VF+ A  AAL
Sbjct: 123 TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  210 bits (536), Expect = 4e-70
 Identities = 84/172 (48%), Positives = 120/172 (69%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKT L++ ++ + +P  YVPT F+N+   + VD K V L L DTAGQ+++
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF 61

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           D+LRPL YPDTDV L+CFS+ +P S +NI EKW PE++   P  PIILVG + DLR D N
Sbjct: 62  DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN 121

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
            + +L +  ++PV     +A+A+KI A  Y+ECSA +++ ++EVF+TA  A 
Sbjct: 122 VLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAILAG 173

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  209 bits (534), Expect = 8e-70
 Identities = 94/173 (54%), Positives = 130/173 (75%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLL+ ++ D FPE YVPTVF++Y   + V  KQ  L L+DTAGQEDY
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 61

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ +P S +N+ E+W PE+K + PNVP +L+G + DLR+DP 
Sbjct: 62  DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDPK 121

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           T+  LN MK++P+  E+G+ +A++I A  Y+ECSA +++G++ VF+ A  A L
Sbjct: 122 TLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  206 bits (526), Expect = 1e-68
 Identities = 91/177 (51%), Positives = 131/177 (74%), Gaps = 1/177 (0%)

Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
           ++ K+V+VGD  CGKT LL VF+KD FPE YVPTVFENY A  E+D++++EL+LWDT+G 
Sbjct: 4   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 63

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
             YD +RPLSYPD+D +L+CF I  P++L+++ +KW  E++ FCPN  ++LVG K DLR 
Sbjct: 64  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
           D +T+ EL+  +Q PV  ++G  MA++I A  Y+ECSA +S+  VR++F  AT A +
Sbjct: 124 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  206 bits (524), Expect = 1e-67
 Identities = 87/176 (49%), Positives = 127/176 (72%), Gaps = 1/176 (0%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           R K+V+VGD  CGKT LL VF+KD +PE YVPTVFENY A  E+D  ++EL +WDT+G  
Sbjct: 1   RCKIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSS 60

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
            YD +RPL+YPD+D +L+CF I  P++L+++ +KW  E + FCPN  ++LVG K D+R D
Sbjct: 61  YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTD 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAAL 179
            +T++EL+K +  PV  E+G  +A+++ A AY+ECS++  E  VR+VF   T A++
Sbjct: 121 LSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASV 176

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  190 bits (484), Expect = 3e-62
 Identities = 85/173 (49%), Positives = 117/173 (67%), Gaps = 2/173 (1%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VD   V L LWDTAGQEDY
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDY 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           +RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPI+LVG K DLR+D  
Sbjct: 63  NRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDDKQ 122

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
              +       P+   +G  + ++I A AY+ECS+K+++ V+ VF+ A +  L
Sbjct: 123 FFADHPGAV--PITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  190 bits (484), Expect = 1e-61
 Identities = 85/179 (47%), Positives = 123/179 (68%), Gaps = 1/179 (0%)

Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
             +R KLV+VGD  CGKT +L V +KD +PE YVPTVFENY A +E + ++VEL+LWDT+
Sbjct: 10  LVVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTS 69

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           G   YD +RPL Y D+D +L+CF I  P+  ++  +KW  E+  +CP+  I+L+G K DL
Sbjct: 70  GSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDL 129

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
           R D +T+ EL+  KQ P+  E+G AMA+++ A AYLECSA  S++ +  +F TA+   +
Sbjct: 130 RTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCI 188

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  163 bits (415), Expect = 6e-52
 Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 16/172 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K+V++GD   GKT LL+ F  ++F E Y  T+  ++ +  IEVD K+V+L +WDTAGQE 
Sbjct: 2   KIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQER 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
           +  +    Y      ++ + + + +S EN+ +KW  E+K + P N+PIILVGNK DL ++
Sbjct: 62  FRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                     +Q  V  EE +  A++     + E SAK+ E V E FE+  R
Sbjct: 121 ----------RQ--VSTEEAQQFAKENGLL-FFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  152 bits (385), Expect = 2e-47
 Identities = 61/162 (37%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQ-FPEVYVPTVFENYVAD-IEVDSKQVELALWDTAG 62
             K+VIVGD   GK+ LL     ++     Y P    NYV   IE D K  +  L DTAG
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSP-DSLENIPEKWTPEVKHFCP-NVPIILVGNKKD 120
           QEDYD +R L Y   +  L  F I      +E I EK T E+ H     VPIILVGNK D
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120

Query: 121 LRN---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC 159
           LR+     +      K+  EP+ P          +AF  +E 
Sbjct: 121 LRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  150 bits (381), Expect = 4e-46
 Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 6/188 (3%)

Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAG 62
              K+V++GDG  GKT LL     D+FPE Y PT+     A  IE   + ++L LWDTAG
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 121
           QE+Y  LRP  Y   + IL+ +     +S + + E+W  E++   P +VPI+LVGNK DL
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 122 RNDPNTIKEL--NKMKQEPVKPEEGRAMAQKINAFAYLECSAKS--KEGVREVFETATRA 177
            ++ ++ +E+     ++  +     +A+  ++   A LE SAKS     V E+F+   R 
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 178 ALQVKKKK 185
            L+  +K 
Sbjct: 184 LLEEIEKL 191

Length = 219

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  136 bits (345), Expect = 3e-41
 Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 16/176 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K++++GD   GK+ LL  F+  +F E Y  T+  +     IEVD K+V+L +WDTAGQE 
Sbjct: 2   KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           +  +    Y      L+ + I + +S EN+ E W  E++ +  PNV I+LVGNK DL   
Sbjct: 62  FRSITSSYYRGAVGALLVYDITNRESFENL-ENWLKELREYASPNVVIMLVGNKSDLEE- 119

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                      Q  V  EE  A A++ +   + E SAK+   V E FE   R  L+
Sbjct: 120 -----------QRQVSREEAEAFAEE-HGLPFFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  130 bits (330), Expect = 5e-39
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 16/172 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L I F   +F E Y PT+ ++Y   I VD +   L + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R     + D  ++ +SI S +S E I    +    VK    +VPI+LVGNK DL   
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKD-KEDVPIVLVGNKCDL--- 116

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                      +  V  EEG A+A++     +LE SAK+   + E+F T  R
Sbjct: 117 ---------ENERQVSTEEGEALAEEWGC-PFLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  124 bits (315), Expect = 1e-36
 Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 19/180 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L I F +  F + Y PT+ ++Y   IE+D +   L + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP--EVKHFCPNVPIILVGNKKDLRND 124
             +R       +  L+ +SI    S E I +       VK    +VPI+LVGNK DL + 
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLES- 119

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  EEG+ +A++     +LE SAK +  V E F    R   +++KK
Sbjct: 120 -----------ERVVSTEEGKELARQWGC-PFLETSAKERVNVDEAFYDLVR---EIRKK 164

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  124 bits (313), Expect = 2e-36
 Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 19/180 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L I F +  F + Y PT+ ++Y   IE+D +   L + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP--EVKHFCPNVPIILVGNKKDLRND 124
             +R       +  L+ +SI    S E I +       VK    +VPI+LVGNK DL N 
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKD-RDDVPIVLVGNKCDLEN- 121

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  EEG+ +A++     +LE SAK +  V E F    R   +++K 
Sbjct: 122 -----------ERVVSTEEGKELARQWGC-PFLETSAKERINVDEAFYDLVR---EIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score =  123 bits (311), Expect = 7e-36
 Identities = 77/195 (39%), Positives = 106/195 (54%), Gaps = 26/195 (13%)

Query: 7   KLVIVGDGACGKTCLLI------VFSKDQFPEVYVPTVF--ENYVADIEV--------DS 50
           K V+VGD A GKT L+         ++ Q    +VPTV+  + Y    EV        D 
Sbjct: 4   KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG 63

Query: 51  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 110
             V L LWDT G  D+D+ R  +Y  +DV+L+CFSI SP+SL N+   W PE++HFCP V
Sbjct: 64  VSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRV 121

Query: 111 PIILVGNKKDLR-------NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163
           P+ILVG K DLR       N             + + PE GRA+A+++    Y E S  +
Sbjct: 122 PVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKEL-GIPYYETSVVT 180

Query: 164 KEGVREVFETATRAA 178
           + GV++VF+ A RAA
Sbjct: 181 QFGVKDVFDNAIRAA 195

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  111 bits (280), Expect = 1e-31
 Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 16/173 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K+V++G+G  GKT L++ + +++F E +  T   ++    + +  K+++LA+WDTAGQE 
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           Y  L P+ Y D D  ++ + I   DS + + +KW  E+K     N+ +++VGNK DL   
Sbjct: 62  YHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLE-- 118

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
                     +Q  V   E    A+ + A  + E SAK+ +G+ E+F +  + 
Sbjct: 119 ----------RQRVVSKSEAEEYAKSVGA-KHFETSAKTGKGIEELFLSLAKR 160

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  111 bits (281), Expect = 1e-31
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 20/175 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KLV++GD + GK+ +++ F K++F E    T+   F      + +D   V+  +WDTAGQ
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQT--VNLDDTTVKFEIWDTAGQ 60

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E Y  L P+ Y      ++ + I S +S E   + W  E++ H  PN+ I L GNK DL 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKA-KSWVKELQEHGPPNIVIALAGNKADLE 119

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           +            +  V  EE +  A +     ++E SAK+ E V E+F    R 
Sbjct: 120 S------------KRQVSTEEAQEYADENGLL-FMETSAKTGENVNELFTEIARK 161

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  111 bits (279), Expect = 2e-31
 Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 18/169 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++++GD   GK+ LL+ F+ D F E    T+  ++ V  + VD K+V+LA+WDTAGQE 
Sbjct: 2   KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRN 123
           +  L    Y     +++ + +   D+ +N+ + W  E+  +   P+   +LVGNK D  N
Sbjct: 62  FRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                          V  EEG+  A+K N   ++E SAK++ GV++ FE
Sbjct: 121 -------------REVTREEGQKFARKHNML-FIETSAKTRIGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  107 bits (268), Expect = 1e-29
 Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 25/183 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K V+L +WDTAGQE 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE- 62

Query: 66  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDL 121
             R R ++   Y     I++ + +   +S  N+ + W  E+  +   NV  +LVGNK DL
Sbjct: 63  --RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 119

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
            +            ++ V   E +  A ++    +LE SAK+   V E F T  R   ++
Sbjct: 120 TD------------KKVVDYTEAKEFADELG-IPFLETSAKNATNVEEAFMTMAR---EI 163

Query: 182 KKK 184
           KK+
Sbjct: 164 KKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  105 bits (264), Expect = 4e-29
 Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 29/185 (15%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KL+++GD   GK+CLL+ FS+D F   ++ T+   F+  +  IE+D K+++L +WDTAGQ
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFK--IRTIELDGKKIKLQIWDTAGQ 62

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKK 119
           E   R R ++   Y     I++ + I    S ENI + W   + +H   +V  +LVGNK 
Sbjct: 63  E---RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNKC 118

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           D+                 V  EEG A+A++     +LE SAK+   V E F T  +   
Sbjct: 119 DMEEK------------RVVSKEEGEALAREYG-IKFLETSAKANINVEEAFLTLAKD-- 163

Query: 180 QVKKK 184
            + KK
Sbjct: 164 -ILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  105 bits (263), Expect = 5e-29
 Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 9   VIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           V+VG G  GK+ LL      +  EV      T   +     E+D  +V+L L DT G ++
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY-VKELDKGKVKLVLVDTPGLDE 59

Query: 66  YDRLRP-----LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           +  L       L     D+IL+       +S E+   K     +     +PIILVGNK D
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDA--KLLILRRLRKEGIPIILVGNKID 117

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           L  +              V+         KI      E SAK+ EGV E+FE 
Sbjct: 118 LLEE------------REVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEK 158

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  104 bits (262), Expect = 7e-29
 Identities = 61/170 (35%), Positives = 91/170 (53%), Gaps = 18/170 (10%)

Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQE 64
            KLV +GD + GKT ++  F  D F   Y  T+  ++++    VD K V L LWDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 65  DYDRLRPLSY-PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLR 122
            +  L P SY  D+ V ++ + I +  S +N  +KW  +V+    N  II LVGNK DL 
Sbjct: 61  RFRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLS 118

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
           +            +  V  EEG   A++ NA  ++E SAK+   V+++F+
Sbjct: 119 D------------KRQVSTEEGEKKAKENNAM-FIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  101 bits (254), Expect = 1e-27
 Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 14/171 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V+L + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDP 125
             +R   +   +  L+ FSI   +S   + E     ++     NVP++LVGNK D     
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCD----- 116

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                L   +Q  V  EE   +A++     Y+E SAK++  V +VF    R
Sbjct: 117 -----LEDKRQVSV--EEAANLAEQWGV-NYVETSAKTRANVDKVFFDLVR 159

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  100 bits (250), Expect = 5e-27
 Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 16/173 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG G  GK+ L I F +  F   Y PT+ ++Y    E+D +   L + DTAGQE++
Sbjct: 4   KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEEF 63

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP--EVKHFCPNVPIILVGNKKDLRND 124
             +R       +  L+ FS+    S E + +  T    VK      P+ILVGNK DL + 
Sbjct: 64  SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH- 121

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
                      Q  V  EEG+ +A+++    Y+E SAK +  V + F    R 
Sbjct: 122 -----------QRQVSREEGQELARQLK-IPYIETSAKDRVNVDKAFHDLVRV 162

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  100 bits (251), Expect = 6e-27
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 18/171 (10%)

Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           +K+ ++G  + GK+ L + F +  F E Y PT+   +   I    ++  L + DTAGQ++
Sbjct: 2   RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDE 61

Query: 66  YDRLRPLSYPDTDV--ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLR 122
           Y  L P  Y    +   ++ +S+ S  S E +   +   +      +VPI+LVGNK DL 
Sbjct: 62  YSIL-PQKY-SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                        +  V  EEG+ +A+   A A+LE SAK  E V E FE 
Sbjct: 120 M------------ERQVSAEEGKKLAESWGA-AFLESSAKENENVEEAFEL 157

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 98.3 bits (245), Expect = 3e-26
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 17/172 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG G  GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R       +  L  F+I+S  S E+I    +    VK    +VP++LVGNK DL   
Sbjct: 63  SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAA- 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                         V   +G+ +A+      Y+E SAK+++GV E F T  R
Sbjct: 121 ------------RTVSTRQGQDLAKSYGI-PYIETSAKTRQGVEEAFYTLVR 159

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 98.3 bits (245), Expect = 3e-26
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V++G G  GK+ L + F ++ F E Y PT+ ++Y   +E+D +Q +L + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R L        L+ +S+ S  SL  + E  +    +K    NVP++LVGNK DL +D
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDD 121

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                         V  E+G +++Q+     + E SA+ +  V EVF    R
Sbjct: 122 ------------RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVR 161

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 97.9 bits (244), Expect = 3e-26
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 15/168 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++++GD   GKTC++  F    F E    T+  ++ +  +E+  K+V+L +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRND 124
           +  +    Y   +  ++ + I    S E++P  W  EV+ +   NV ++L+GNK DL   
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLE-- 121

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                     +Q  V  EE   +A+     A LE SAK    V E F 
Sbjct: 122 ----------EQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFL 159

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 96.9 bits (242), Expect = 1e-25
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 20/171 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K+V++GD   GK+ LL  F++++F      T+   F      I++D K ++  +WDTAGQ
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRT--IQIDGKTIKAQIWDTAGQ 62

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLR 122
           E Y  +    Y      L+ + I    + EN+ E+W  E++     N+ I+LVGNK DLR
Sbjct: 63  ERYRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHADSNIVIMLVGNKSDLR 121

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           +               V  EE +A A+K     ++E SA     V E F+ 
Sbjct: 122 H------------LRAVPTEEAKAFAEKNGLS-FIETSALDGTNVEEAFKQ 159

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 96.5 bits (240), Expect = 1e-25
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L + F +  F + Y PT+ ++Y   IEVD +Q  L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R L   +     + +SI +  S  ++ +  +    VK    +VP+ILVGNK DL + 
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDT-EDVPMILVGNKCDLED- 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                      +  V  EEG+ +A++     +LE SAKSK  V E+F    R
Sbjct: 121 -----------ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVR 161

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 96.0 bits (239), Expect = 2e-25
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 16/173 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D KQ++L +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  +    Y      L+ + I   ++  ++   W  + + H   N+ I+L+GNK DL + 
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
                         V  EEG A A++ +   ++E SAK+   V E F    + 
Sbjct: 125 ------------REVSYEEGEAFARE-HGLIFMETSAKTASNVEEAFINTAKE 164

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 95.2 bits (237), Expect = 3e-25
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQ--VELALWDTAGQ 63
           K+++VG+G  GK+ ++  F K  F + Y  T+  +++   I +      V L LWDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
           E++D +    Y      ++ FS    +S E I E W  +V+  C ++P++LV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDL-- 118

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                     + Q  +  EE  A+A+++        S K    V E+FE
Sbjct: 119 ----------LDQAVITNEEAEALAKRLQ-LPLFRTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 95.3 bits (237), Expect = 4e-25
 Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V++G G  GK+ L + F    F E Y PT+ + Y  +IEVDS    L + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R L   +    ++ +S+ +  + ++I         VK +   VPIILVGNK DL + 
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLES- 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                      +  V   EGRA+A++     ++E SAKSK  V E+F    R
Sbjct: 121 -----------EREVSSAEGRALAEEWGC-PFMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 95.1 bits (237), Expect = 5e-25
 Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           ++V++GD   GK+ L++    ++FPE  VP V        +V  ++V   + DT+ +   
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIPADVTPERVPTTIVDTSSRPQD 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
                      +VI + +S+D P +LE I  KW P ++     VPIILVGNK DLR+  +
Sbjct: 63  RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 122

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
                 +M   P+       M +       +ECSAK+   V EVF  A +A L
Sbjct: 123 QAGLEEEM--LPI-------MNEFREIETCVECSAKTLINVSEVFYYAQKAVL 166

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 93.7 bits (233), Expect = 2e-24
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 26/177 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K +I+G    GK+CLL  F +++F +    T+   F + V  + V  K V+L +WDTAGQ
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRV--VNVGGKSVKLQIWDTAGQ 59

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKK 119
           E   R R ++   Y      L+ + I S +S   +   W  + +    P++ IILVGNKK
Sbjct: 60  E---RFRSVTRSYYRGAAGALLVYDITSRESFNAL-TNWLTDARTLASPDIVIILVGNKK 115

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
           DL +D    +E+  +        E    AQ+ N   +LE SA + E V E F    R
Sbjct: 116 DLEDD----REVTFL--------EASRFAQE-NGLLFLETSALTGENVEEAFLKCAR 159

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 93.1 bits (232), Expect = 3e-24
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 19/183 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K++I+GD   GKT L+  +   +F   Y  T+  +++  ++ VD + V L +WDTAGQE 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
           +  L    Y   D  ++ + + +P S E++ + W  E +    P    N P +++GNK D
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           L  +        K +Q            +      Y E SAK    V + FET  R AL+
Sbjct: 121 L--EEKRQVSTKKAQQ----------WCKSKGNIPYFETSAKEAINVDQAFETIARLALE 168

Query: 181 VKK 183
            +K
Sbjct: 169 QEK 171

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 93.4 bits (232), Expect = 4e-24
 Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 32/204 (15%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++GDG  GKT L I    + F E Y PT+ ++Y   + VD +   L + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE---VKHFCP-NVPIILVGNKKDLR 122
             LR     + +  ++ +SI S  + E + E++  +   VK     +VPI++VGNK D  
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCD-- 117

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV- 181
                     K+ +  V  EEG A+A+++    ++E SAK+   V   F T  RA  Q  
Sbjct: 118 ----------KVYEREVSTEEGAALARRLGC-EFIEASAKTNVNVERAFYTLVRALRQQR 166

Query: 182 -------------KKKKKGRCRLL 192
                        K+KKK +C ++
Sbjct: 167 QGGQGPKGGPTKKKEKKKRKCVIM 190

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 91.8 bits (228), Expect = 8e-24
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 16/172 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L + F +  F E Y PT+ ++Y   +EVD +Q  L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R L   +    ++ +SI +  +  ++ +  +    VK    +VP+ILVGNK DL + 
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED- 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                      +  V  E+G+ +A++    A+LE SAK+K  V E+F    R
Sbjct: 121 -----------ERVVGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVR 160

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 91.9 bits (228), Expect = 8e-24
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 24/178 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K++++GDG  GK+ L+  +  ++F      T+   F N   D+EVD   V L +WDTAGQ
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN--KDLEVDGHFVTLQIWDTAGQ 64

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
           E +  LR   Y  +D  L+ FS+D   S +N+   W  E  ++       + P +++GNK
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNK 123

Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
            D             + +  V  EE +A  +    + Y E SAK    V   FE A R
Sbjct: 124 ID-------------IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 168

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 90.6 bits (225), Expect = 8e-23
 Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 26/178 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           +L+++GD   GK+ LL  F++ +F EV  PTV   F + + +IE    +++L LWDTAGQ
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE-PGVRIKLQLWDTAGQ 62

Query: 64  EDYDRLRPL--SYPDTDV-ILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPI-ILVGNK 118
           E   R R +  SY    V +L+ F I + +S E++ + W  E + H  P+ P+ ILVG+K
Sbjct: 63  E---RFRSITRSYYRNSVGVLLVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHK 118

Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
            DL +            Q  V  EE   +A+ +    Y+E SA++ + V E FE  T+
Sbjct: 119 CDLES------------QRQVTREEAEKLAKDL-GMKYIETSARTGDNVEEAFELLTQ 163

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 89.1 bits (221), Expect = 2e-22
 Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 15/179 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+I+GD   GK+ LL+ F+ + F   Y+ T+  ++ +  +E++ ++V+L +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y  T  +++ + + + +S  N+ ++W  E++  C +V  +LVGNK D   DP
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKND---DP 123

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                     ++ V+ E+    A ++   +  E SAK    V E+F   T   L+ KK 
Sbjct: 124 E---------RKVVETEDAYKFAGQMG-ISLFETSAKENINVEEMFNCITELVLRAKKD 172

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 87.8 bits (217), Expect = 9e-22
 Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 17/178 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++++GD   GK+ LL+ F      ++  PT+  ++ +  + V  K+++L +WDTAGQE 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
           +  L    Y +   I++ + +   ++  N+ + W  EV+ +  N   +  LVGNK D   
Sbjct: 75  FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVD--- 131

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
                    +  +  V  EEG A+A++     +LECSAK++E V + FE      ++V
Sbjct: 132 ---------RESERDVSREEGMALAKEHGC-LFLECSAKTRENVEQCFEELALKIMEV 179

Length = 211

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 67/203 (33%), Positives = 93/203 (45%), Gaps = 25/203 (12%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MA+   KLV+VG G  GK+ L I F ++ F + Y PT+ ++Y     +D +   L + DT
Sbjct: 1   MASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNK 118
           AGQE+Y  +R          L  +SI S  S E I    +    VK     VP+ILVGNK
Sbjct: 61  AGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNK 119

Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR-- 176
            DL ++              V   EG+ +A+      +LE SAK +  V E F    R  
Sbjct: 120 CDLDSE------------RQVSTGEGQELAKSFGI-PFLETSAKQRVNVDEAFYELVREI 166

Query: 177 -------AALQVKKKKKGRCRLL 192
                     Q +KKK G C +L
Sbjct: 167 RKYLKEDMPSQKQKKKGGLCLIL 189

Length = 189

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 86.9 bits (215), Expect = 2e-21
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 17/173 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D+K ++L +WDTAGQE 
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  +    Y      L+ + I   ++  ++   W  + + H   N+ I+L+GNK DL + 
Sbjct: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAH- 125

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF-ETATR 176
                      +  V  EEG   A K +   ++E SAK+ + V E F +TA +
Sbjct: 126 -----------RRAVSTEEGEQFA-KEHGLIFMEASAKTAQNVEEAFIKTAAK 166

Length = 210

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 83.0 bits (205), Expect = 3e-20
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 17/171 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K +I+GD   GK+CLL  F++ +F      T+  E     IEV+ ++++L +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           +  +    Y      LM + I    +  ++   W  + ++   PN  I L+GNK DL   
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEA- 121

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF-ETA 174
                      Q  V  EE +  A + N   +LECSAK+ E V + F ETA
Sbjct: 122 -----------QRDVTYEEAKQFADE-NGLLFLECSAKTGENVEDAFLETA 160

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 81.4 bits (201), Expect = 7e-20
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 18/177 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-VFENYVADIEVDSKQVELALWDTAGQED 65
           K++++GD A GK+ L+  F  D +    + T     Y  + + + K + +  WDTAGQE 
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y      ++ F +    + +N+  KW  E++ + P +P I+V NK DL  DP
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDL--DP 118

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
           +               ++    A+K N   Y   SA     V ++F+ A + A+  K
Sbjct: 119 SVT-------------QKKFNFAEKHNLPLYY-VSAADGTNVVKLFQDAIKLAVSYK 161

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 81.5 bits (201), Expect = 9e-20
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 16/168 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+I+G+ + GKT  L  ++ D F   +V TV  ++ V  +  + K+++L +WDTAGQE 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           Y  +    Y      ++ + I + +S  N  + W+ ++K +   N  +ILVGNK D+ ++
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                         V  E GR +A ++  F + E SAK    V++VFE
Sbjct: 122 ------------RVVSAERGRQLADQL-GFEFFEASAKENINVKQVFE 156

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 81.1 bits (200), Expect = 1e-19
 Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 19/182 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V++G G  GK+ + + F    FP+ + PT+ + Y     +D++   L + DTAGQ ++
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQAEF 63

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R       +  ++C+S+    S +   E  +    V+    ++P++LVGNK DL   
Sbjct: 64  TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLVGNKVDLE-- 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                     +Q  V  EEGR +A++ N   + E SA  +  + + F    R   ++++K
Sbjct: 121 ----------QQRQVTTEEGRNLAREFNC-PFFETSAALRFYIDDAFHGLVR---EIRRK 166

Query: 185 KK 186
           + 
Sbjct: 167 ES 168

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 80.0 bits (197), Expect = 3e-19
 Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 16/176 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           +L+++GD   GKTCLL  F+ ++F   ++ T+  ++ +  IEVD  +V + +WDTAGQE 
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
           Y  +    Y     I + + I S  S ++I  KW  +V  + P  V  IL+GNK D    
Sbjct: 62  YQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKAD---- 116

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                   + ++  V  E+G  +A K     + E SA + + ++E F   T   LQ
Sbjct: 117 --------EEQKRQVGDEQGNKLA-KEYGMDFFETSACTNKNIKESFTRLTELVLQ 163

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 78.8 bits (194), Expect = 1e-18
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K+V++G+   GKTCL+  F++  FP     T+  ++ +  +E+  ++++L +WDTAGQE 
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
           +  +    Y   + +++ + I   +S   +PE W  E++ +  N V  ILVGNK DL   
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYANNKVITILVGNKIDLAER 127

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                         V  +     +       YLE SAK  + V ++F 
Sbjct: 128 ------------REVSQQRAEEFS-DAQDMYYLETSAKESDNVEKLFL 162

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 77.5 bits (191), Expect = 7e-18
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N
Sbjct: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131

Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           ++V+ G G  GK+ L++ F K  F E Y+PT+ + Y   I        L + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT--PEVK-HFCPNVPIILVGNKKDLRN 123
             ++ LS       ++ +SI S  SLE +   +    E+K +    +PI+LVGNK D   
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD--- 119

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                    +     V   EG A+A+  N  A++E SAK+   V+E+F+
Sbjct: 120 ---------ESPSREVSSSEGAALARTWNC-AFMETSAKTNHNVQELFQ 158

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KL++VGDG  GKT  +      +F + Y+PT+  E +      +   +   +WDTAGQE 
Sbjct: 11  KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK 70

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+LVGNK D+++
Sbjct: 71  FGGLRDGYYIKGQCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKD 127

Length = 215

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 76.4 bits (188), Expect = 1e-17
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV---FENYVADIEVDSKQVELALWDTAG 62
           K+++VGD   GKTCLL+ F    F    ++ TV   F N V  + VD  +V+L +WDTAG
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKV--VTVDGVKVKLQIWDTAG 59

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 121
           QE +  +    Y D   +L+ + + +  S +NI   W  E+  +   +V I+L+GNK D+
Sbjct: 60  QERFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYAQSDVVIMLLGNKADM 118

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                         +  VK E+G  +A++     ++E SAK+   V   F    +
Sbjct: 119 SG------------ERVVKREDGERLAKEYGV-PFMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 21/174 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++ +G+   GK+C++  + + +F   Y+PT+  +Y V  + V +K+V +  +D +G  +
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC------PNVPIILVGNKK 119
           Y  +R   Y DT  +L+ + +    S E + + W  E+K          N+ +++  NK 
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           DL             K   V  +EGR  A+    F Y E SA + EGV E+F+T
Sbjct: 121 DL------------TKHRAVSEDEGRLWAES-KGFKYFETSACTGEGVNEMFQT 161

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 22/181 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+ ++G    GK+ L + F   +F   Y P +   Y   + +D +QV L + DT GQ+  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 67  D----RLRPLSYPDTDVILMCFSIDSPDSLENI-PEKWT-PEVKHFCPNVPIILVGNKKD 120
           +      R L + D  V++  +SI    S + +        E+K     +P+ILVGNK D
Sbjct: 61  EDPESLERSLRWADGFVLV--YSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
           L +           +Q  V  EEG+ +A +     + E SA ++   V+ VF    R   
Sbjct: 119 LLH----------SRQ--VSTEEGQKLALE-LGCLFFEVSAAENYLEVQNVFHELCREVR 165

Query: 180 Q 180
           +
Sbjct: 166 R 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 16/181 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ +L  F++++F      T+  E     ++V+ K V+  +WDTAGQE 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    + +N+ ++W  E++ H   N+ I++ GNK D    
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSD---- 128

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                 LN ++   V  E+G+A+A+K    ++LE SA     V + F+T       +  K
Sbjct: 129 ------LNHLRS--VAEEDGQALAEK-EGLSFLETSALEATNVEKAFQTILLEIYHIISK 179

Query: 185 K 185
           K
Sbjct: 180 K 180

Length = 216

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 74.5 bits (183), Expect = 5e-17
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 17/169 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K+++VGD + GKTCL+  F KD F + Y  T+   FE  +   EV      L LWDTAGQ
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFE--MERFEVLGVPFSLQLWDTAGQ 59

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122
           E +  +    Y     I++ F +    SLE+  +     +K   P +V + LVG KKDL 
Sbjct: 60  ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL- 118

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
              ++  +   M+Q+ +K      +A+++ A  Y   SA + E VR+ F
Sbjct: 119 ---SSPAQYALMEQDAIK------LAREMKA-EYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 27/180 (15%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYVADIEVDSKQ-VEL 55
           KL+ +GD   GKT  L  ++ ++F   ++ TV          + +   D        V L
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 56  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPII 113
            LWDTAGQE +  L    + D    L+ F + S  S  N+   W  +++   +C N  I+
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRN-WMSQLQAHAYCENPDIV 124

Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           L+GNK DL              Q  V   + R +A K     Y E SA + + V +  ET
Sbjct: 125 LIGNKADL------------PDQREVSERQARELADKYG-IPYFETSAATGQNVEKAVET 171

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 72.9 bits (179), Expect = 2e-16
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 9/122 (7%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K++++GD   GKTCL   F   +FPE    T+   F      +E+D +++++ LWDTAGQ
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERT--VEIDGERIKVQLWDTAGQ 61

Query: 64  EDYDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKD 120
           E + + +    Y +   ++  + + +  S  ++P  W  E +       VP ILVGNK D
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCD 120

Query: 121 LR 122
           LR
Sbjct: 121 LR 122

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 72.2 bits (177), Expect = 3e-16
 Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 21/178 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKD--QFPEVYVPTVFENYVAD---IEVDSKQVELALWDTA 61
           +  +VGD A GK+ L+ +F  D   F + Y  T   + V     +   S  VEL ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV--PIILVGNKK 119
           GQE +  +    +    V+ + + + +  S  N   +W   V+     +  P +LVGNK 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNC-SRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           DL +           ++E V   + +A+AQ  N   + E SAK   G    F +  RA
Sbjct: 121 DLTD-----------RRE-VDAAQAQALAQA-NTLKFYETSAKEGVGYEAPFLSLARA 165

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 70.5 bits (173), Expect = 4e-16
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL      +FP   +    +    D  EVD     L +WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNK 118
                 +     D IL+ + +   +SL  +     W P ++     +P+ILVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 71.6 bits (176), Expect = 5e-16
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KLV+VGDG  GKT  +      +F + YV T+  E +  D   +  ++   +WDTAGQE 
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++ 
Sbjct: 62  FGGLRDGYYIQGQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 119

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 71.2 bits (175), Expect = 5e-16
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 18/176 (10%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV---DSKQVELALWDTA 61
             KL++VG G  GKT L      ++F      T   N V D ++   + K++ L +WD  
Sbjct: 1   EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGIN-VQDWKIPAPERKKIRLNVWDFG 59

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           GQE Y            + L+ F + + D +  +P  W  ++K F    P+ILVG   D 
Sbjct: 60  GQEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVP-YWLRQIKAFGGVSPVILVGTHID- 117

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
            +    I +    K+ P            IN       S K+ +G+ E+ +   + 
Sbjct: 118 ESCDEDILKKALNKKFP----------AIIN--DIHFVSCKNGKGIAELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 68.7 bits (168), Expect = 1e-14
 Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 15/174 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +LV +G    GKT L+  F  D F   +  TV E +  + EV   +V + + DT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R LS  + D   + +S+D P+S E +    +   EVK     VPI++VGNK D   +
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKE-DKFVPIVVVGNKIDSLAE 119

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
                     +Q               N F  +E SAK  E V EVF+   + A
Sbjct: 120 ----------RQVEAADALSTVELDWNNGF--VEASAKDNENVTEVFKELLQQA 161

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 25/175 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQ-VELALWDTAG 62
           K++++GD   GKT ++  +    F + Y  T+   F   V  IE D    V L LWD AG
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKV--IEWDPNTVVRLQLWDIAG 59

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGN 117
           QE +  +  + Y      ++ F +  P + E +  KW  ++  K   PN   +P +L+ N
Sbjct: 60  QERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPALLLAN 118

Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF-AYLECSAKSKEGVREVF 171
           K DL+ +          +              K N F  + E SAK    + E  
Sbjct: 119 KCDLKKERLAKDPEQMDQFC------------KENGFIGWFETSAKENINIEEAM 161

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 68.5 bits (167), Expect = 2e-14
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 11  VGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQEDYDRL 69
           VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 70  RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
           R   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKD 113

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 67.5 bits (165), Expect = 7e-14
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 25/178 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--FENYVADIEVDSKQVELALWDTAGQE 64
           ++V++G    GKT ++  F   +F E Y PT+  F   +  I  +  Q  L + DT+G  
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQ--LDILDTSGNH 59

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--------KWTPEVK-HFCPNVPIILV 115
            +  +R LS    DV ++ FS+D+ +S E +          K   + K      +P+++ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 116 GNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           GNK D               +E  + E  + +    N  AY E SAK    + E+F  
Sbjct: 120 GNKADR-----------DFPREVQRDEVEQLVGGDENC-AYFEVSAKKNSNLDEMFRA 165

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 15/167 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           +++I+G    GKT L+  F+ D F E    TV  ++ +  +E+  K++ L +WDTAGQE 
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           ++ +    Y     I++ + I   ++ +++P KW   + K+   +  ++LVGNK D   D
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
               +E+ +        ++G   AQ+I    + E SAK    V E+F
Sbjct: 121 ----REITR--------QQGEKFAQQITGMRFCEASAKDNFNVDEIF 155

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVAD-IEVDSKQVELALWDTAGQE 64
           K+V++G  + GKT L+  +   +F    Y  T+   +VA  + V  + V L +WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
            Y+ +  + Y      ++C+ +    S E   + W  E+++   +  I L G K DL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDL--- 117

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
              I++   ++Q  V   + +  A +I A  + E S+K+ + V E+F+ 
Sbjct: 118 ---IEQDRSLRQ--VDFHDVQDFADEIKAQHF-ETSSKTGQNVDELFQK 160

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 20/185 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEV-DSKQVELALWDTAGQE 64
           K+V++GDGA GKT L+  F+++ F + Y  T+  + +   I +  S  V L +WD  GQ+
Sbjct: 2   KIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQ 61

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN----VPIILVGNKKD 120
              ++          + + + I +  S EN+ E W   VK           ++LVGNK D
Sbjct: 62  IGGKMLDKYIYGAQAVCLVYDITNSQSFENL-EDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           L +           +Q  V  E+    AQ+ N    +  SAK+ + V   F+      L 
Sbjct: 121 LEH----------NRQ--VTAEKHARFAQE-NDMESIFVSAKTGDRVFLCFQRIAAELLG 167

Query: 181 VKKKK 185
           VK  +
Sbjct: 168 VKLSQ 172

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 64.1 bits (157), Expect = 3e-13
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 43/181 (23%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIE-VDSKQVELALWDTAGQ 63
           +++++G DGA GKT +L      +     +PT+ F     ++E V+ K V+  +WD  GQ
Sbjct: 1   RILMLGLDGA-GKTTILYKLKLGEVVTT-IPTIGF-----NVETVEYKNVKFTVWDVGGQ 53

Query: 64  EDYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPI 112
              D++RPL    Y +TD ++  F +DS D  E I E            E+K      P+
Sbjct: 54  ---DKIRPLWKHYYENTDGLI--FVVDSSDR-ERIEEAKNELHKLLNEEELK----GAPL 103

Query: 113 ILVGNKKDLRNDPNTIKEL-NKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
           +++ NK+DL     T  EL   +  E +K        ++ +      CSA + +G+ E  
Sbjct: 104 LILANKQDLPGA-LTESELIELLGLESIKG-------RRWHIQ---PCSAVTGDGLDEGL 152

Query: 172 E 172
           +
Sbjct: 153 D 153

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 10/170 (5%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSKQVELALWDTAGQED 65
           K+ ++GD   GKT L++ + + +F E Y+ T+  N++   I +   ++  ++WD  GQ +
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  + PL   D   IL  F +    +L +I E W  + + F      ILVG K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKE-WYRQARGFNKTAIPILVGTKYDL---- 116

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETAT 175
               +L   +QE +  ++ R  A+ + A     CS      V+++F+   
Sbjct: 117 --FADLPPEEQEEIT-KQARKYAKAMKAPLIF-CSTSHSINVQKIFKFVL 162

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 30/203 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQ---VELALWDTAGQ 63
           K+V++GD   GKT LL  + + +F +  V TV   +        KQ     +++WDTAG+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL------KQWGPYNISIWDTAGR 54

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL-- 121
           E +  L  +       +++ + + +  SLE + +++         +    +VGNK DL  
Sbjct: 55  EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 122 -----RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF-------------AYLECSAKS 163
                  + +    ++   Q  V  E+ +A  ++IN +                E SAK+
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 164 KEGVREVFETATRAALQVKKKKK 186
              V E+FE      L +   ++
Sbjct: 175 GYNVDELFEYLFNLVLPLILAQR 197

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 28/187 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFS-KDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           ++V++GD   GK+ L  +F+        Y  +  + Y   + VD ++  L ++D   QED
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK------HFCPNVPIILVGNKK 119
              L        D  ++ +S+    S E        E++          ++PIILVGNK 
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEK-----ASELRIQLRRARQAEDIPIILVGNKS 116

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           DL            ++   V  +EGRA A   +   ++E SA  +  V E+FE   R   
Sbjct: 117 DL------------VRSREVSVQEGRACAVVFDC-KFIETSAALQHNVDELFEGIVR--- 160

Query: 180 QVKKKKK 186
           QV+ ++ 
Sbjct: 161 QVRLRRD 167

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 55.1 bits (132), Expect = 8e-10
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 16/147 (10%)

Query: 28  DQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86
           D F   Y  T+  ++++  + +D   V L LWDTAGQE +  L P    D+   ++ + I
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 87  DSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR 145
            +  S EN   KW  ++      +V I LVGNK DL        +L K     V  EEG 
Sbjct: 63  TNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDL-------GDLRK-----VTYEEGM 109

Query: 146 AMAQKINAFAYLECSAKSKEGVREVFE 172
             AQ+ N   + E SAK+   ++ +F+
Sbjct: 110 QKAQEYNTM-FHETSAKAGHNIKVLFK 135

Length = 176

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 53.8 bits (129), Expect = 3e-09
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 23/178 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA----DIEVDSKQVELALWDTAG 62
           K ++VGD   GK  +L   +  Q      P  +   +      I +D ++V+L LWDT+G
Sbjct: 8   KFLLVGDSDVGKGEIL---ASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSG 64

Query: 63  QEDYDRL-RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           Q  +  + R  S     +IL+ + I +  S + I ++W  E+    P VP ILVGN+   
Sbjct: 65  QGRFCTIFRSYSRGAQGIILV-YDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNR--- 119

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
                    L+   +  V  E+ +A A++ N   + E S      + E F    R  L
Sbjct: 120 ---------LHLAFKRQVATEQAQAYAER-NGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 52.6 bits (126), Expect = 8e-09
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 30/188 (15%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWD------ 59
           ++ ++G    GKT ++  F   +FPE Y+PT     Y   + +  +  +L + D      
Sbjct: 2   RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61

Query: 60  ---TAGQEDYD-RLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPI 112
              TAGQE  D R R L   ++   ++ + I SPDS   +    ++            PI
Sbjct: 62  YPGTAGQEWMDPRFRGLR--NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPI 119

Query: 113 ILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG-RAMAQKINAFAYLECSAKSKEGVREVF 171
           ++VGNK+D              ++    P      + +K     YLECSAK    +  +F
Sbjct: 120 VVVGNKRDQ-------------QRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166

Query: 172 ETATRAAL 179
           +    +A 
Sbjct: 167 KELLISAT 174

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 43/181 (23%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           +++I+G D A GKT +L      +     +PT+  N    +E V  K V+  +WD  GQE
Sbjct: 16  RILILGLDNA-GKTTILYKLKLGEIVTT-IPTIGFN----VETVTYKNVKFTVWDVGGQE 69

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTP--------EVKHFCPNVPII 113
               LRPL    +P+TD ++  F +DS D  + I E            E+     + P++
Sbjct: 70  ---SLRPLWRNYFPNTDAVI--FVVDSADR-DRIEEAKEELHALLNEEELA----DAPLL 119

Query: 114 LVGNKKDLRND--PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
           ++ NK+DL        I+EL                 +         CSA + EG+ E  
Sbjct: 120 ILANKQDLPGAMSEAEIREL---------LGLHELKDRPWEIQG---CSAVTGEGLDEGL 167

Query: 172 E 172
           +
Sbjct: 168 D 168

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 18/126 (14%)

Query: 8   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV---DSKQVELALWDTAGQE 64
           +V++G  + GKT +L     ++F    VPT   N    I+V   ++K V    WD  GQE
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFN-TEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 65  DYDRLRPL--SYPD-TDVILMCFSIDSPDSLENIPEKWTP--EVKHFCPN--VPIILVGN 117
              +LRPL  SY   TD I+  F +DS D  E + E  T   ++  F  N  VP++++ N
Sbjct: 64  ---KLRPLWKSYTRCTDGIV--FVVDSVDV-ERMEEAKTELHKITKFSENQGVPVLVLAN 117

Query: 118 KKDLRN 123
           K+DL N
Sbjct: 118 KQDLPN 123

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 35/177 (19%)

Query: 9   VIVG-DGACGKTCLL----IVFSKDQ---FPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           +I+G D A GKT  L      FSK+     P    PTV  N +  IEV      L  WD 
Sbjct: 3   LILGLDNA-GKTTFLEQTKTKFSKNYKGLNPSKITPTVGLN-IGTIEVGK--ARLMFWDL 58

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPI 112
            GQE+   L    Y ++  ++  + IDS D  E   E  +          ++     VP+
Sbjct: 59  GGQEELRSLWDKYYAESHGVI--YVIDSTDR-ERFNESKSAFEKVINNEALE----GVPL 111

Query: 113 ILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
           +++ NK+DL  D  ++ E+ K   +      GR              SA   EGV E
Sbjct: 112 LVLANKQDLP-DALSVAEI-KEVFDDCIALIGRRDCL------VQPVSALEGEGVEE 160

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 19/136 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +++++G  + GK+ LL      +     +PTV  N V  ++++ K + L +WD  GQE  
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN-VEMLQLE-KHLSLTVWDVGGQE-- 55

Query: 67  DRLRPL--SY-PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-----VPIILVGNK 118
            ++R +   Y  +TD ++  + +DS D    + E    E+KH   N     VP++L+ NK
Sbjct: 56  -KMRTVWKCYLENTDGLV--YVVDSSDE-ARLDES-QKELKHILKNEHIKGVPVVLLANK 110

Query: 119 KDLRNDPNTIKELNKM 134
           +DL     T +E+ + 
Sbjct: 111 QDL-PGALTAEEITRR 125

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 26/128 (20%)

Query: 8   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67
           + +VG    GKT L+ V +  QF E  +PTV  N     +V    V + +WD  GQ    
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMR---KVTKGNVTIKVWDLGGQP--- 55

Query: 68  RLRPL--SY-PDTDVILMCFSIDSPD---------SLENIPEKWTPEVKHFCPNVPIILV 115
           R R +   Y    + I+  + +D+ D          L ++ EK  P ++     +P++++
Sbjct: 56  RFRSMWERYCRGVNAIV--YVVDAADREKLEVAKNELHDLLEK--PSLEG----IPLLVL 107

Query: 116 GNKKDLRN 123
           GNK DL  
Sbjct: 108 GNKNDLPG 115

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 10  IVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQEDYD 67
           ++G    GK+ LL  F    F    Y PT+   Y  + +EV  ++  L L +    E+  
Sbjct: 9   VLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGEDEEAI 68

Query: 68  RLRPLSYPDTDVILMCFSIDS--PDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 121
            L        DV   C   DS  P+S     E +    K+F    +P + V  K DL
Sbjct: 69  LLNDAELAACDVA--CLVYDSSDPNSFSYCAEVYK---KYFMLGEIPCLFVAAKADL 120

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 25/127 (19%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
           K++IVG    GKT +L  F      EV    PT+  N     E+  K +   +WD  GQE
Sbjct: 17  KVIIVGLDNAGKTTILYQF---LLGEVVHTSPTIGSNVE---EIVYKNIRFLMWDIGGQE 70

Query: 65  DYDRLRP---LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF------CPNVPIILV 115
               LR      Y +TD ++    IDS D  E +P   T E  +            ++++
Sbjct: 71  ---SLRSSWNTYYTNTDAVI--LVIDSTDR-ERLPL--TKEELYKMLAHEDLRKAVLLVL 122

Query: 116 GNKKDLR 122
            NK+DL+
Sbjct: 123 ANKQDLK 129

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 27/129 (20%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIE-VDSKQVELALWDTAGQ 63
           ++++VG  A GKT +L    K +  E+   +PT+  N    +E V+ K +   +WD  GQ
Sbjct: 2   RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQ 54

Query: 64  EDYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-----IILV 115
              D++RPL    + +T  ++  F +DS D  E I E    E      N       ++LV
Sbjct: 55  ---DKIRPLWRHYFQNTQGLI--FVVDSND-RERIGE--AREELQRMLNEDELRDAVLLV 106

Query: 116 -GNKKDLRN 123
             NK+DL N
Sbjct: 107 FANKQDLPN 115

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 32/149 (21%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQED 65
           +++++G  A GKT +L      Q     +PTV  N    +E V  K V+  +WD  GQ  
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFN----VETVTYKNVKFNVWDVGGQ-- 63

Query: 66  YDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTP--------EVKHFCPNVPIIL 114
            D++RPL    Y  T  ++  F +DS D  + I E            E++    +  +++
Sbjct: 64  -DKIRPLWRHYYTGTQGLI--FVVDSADR-DRIDEARQELHRIINDREMR----DALLLV 115

Query: 115 VGNKKDLRN--DPNTIKE---LNKMKQEP 138
             NK+DL +   P+ I+E   L +++   
Sbjct: 116 FANKQDLPDAMKPHEIQEKLGLTRIRDRN 144

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 38.3 bits (89), Expect = 9e-04
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 18/90 (20%)

Query: 7  KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIE-VDSKQVELALWDTAGQ 63
          ++++VG  A GKT +L    K +  EV   +PT+  N    +E V+ K ++  +WD  GQ
Sbjct: 19 RILMVGLDAAGKTTILY---KLKLGEVVTTIPTIGFN----VETVEYKNLKFTMWDVGGQ 71

Query: 64 EDYDRLRPL---SYPDTDVILMCFSIDSPD 90
             D+LRPL    Y +T+ ++  F +DS D
Sbjct: 72 ---DKLRPLWRHYYQNTNGLI--FVVDSND 96

Length = 182

>gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 99  WTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158
           W P +  F  N P++LVGNK DL   P ++K+ NK+K    +     A    +     + 
Sbjct: 86  WIPGLHRFVGNNPVLLVGNKADLL--PKSVKK-NKVKNWLRQ----EAKELGLRPVDVVL 138

Query: 159 CSAKSKEGVREVFET 173
            SA+   G+ E+ E 
Sbjct: 139 ISAQKGHGIDELLEA 153

Length = 365

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 37.3 bits (88), Expect = 0.002
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 76  DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKE 130
           D D++L     D         EK  P  +           P+ILV NK DL  D   +  
Sbjct: 84  DVDLVLFVVDAD---------EKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLP 134

Query: 131 LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           L +             +++ ++    +  SA   + V E+ + 
Sbjct: 135 LLE------------ELSELMDFAEIVPISALKGDNVDELLDV 165

Length = 292

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 43/187 (22%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELA-----LWDT 60
           K+V +G D A GKT LL +  KD     +VPT+           S+++ +       +D 
Sbjct: 21  KIVFLGLDNA-GKTTLLHML-KDDRLAQHVPTLHPT--------SEELTIGNVKFTTFDL 70

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK---------HFCPNVP 111
            G E   R+    +P+ D I+  F +D+ D     PE++  E K             NVP
Sbjct: 71  GGHEQARRVWKDYFPEVDGIV--FLVDAAD-----PERF-QESKEELDSLLNDEELANVP 122

Query: 112 IILVGNKKDLRNDPNTIKELNKMKQE---PVKPEEGRAMAQKINAFAYLE---CSAKSKE 165
           I+++GNK D    P  + E  ++++             ++ K++    +E   CS   ++
Sbjct: 123 ILILGNKIDK---PGAVSE-EELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQ 178

Query: 166 GVREVFE 172
           G  E F 
Sbjct: 179 GYGEGFR 185

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0092|consensus	200		100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
KOG0084|consensus	205		100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
KOG0394|consensus	210		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0078|consensus	207		100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
KOG0098|consensus	216		100.0
KOG0094|consensus	221		100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
KOG0393|consensus	198		100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0080|consensus	209		100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0093|consensus	193		100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0087|consensus	222		100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
KOG0079|consensus	198		100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
KOG0086|consensus	214		100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
PLN03118	211	Rab family protein; Provisional	100.0
KOG0091|consensus	213		100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
KOG0088|consensus	218		100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	100.0
KOG0095|consensus	213		100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.98
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.98
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
KOG0395|consensus	196		99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
KOG0081|consensus	219		99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
KOG0083|consensus	192		99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
KOG0097|consensus	215		99.96
KOG0073|consensus	185		99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
KOG0075|consensus	186		99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
KOG0070|consensus	181		99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.94
PTZ00099	176	rab6; Provisional	99.94
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
PRK04213	201	GTP-binding protein; Provisional	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.92
PRK00089	292	era GTPase Era; Reviewed	99.92
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
cd00881	189	GTP_translation_factor GTP translation factor fami	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
KOG4252|consensus	246		99.91
COG1159	298	Era GTPase [General function prediction only]	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
KOG0071|consensus	180		99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.91
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
KOG1673|consensus	205		99.9
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.9
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.9
PRK00093	435	GTP-binding protein Der; Reviewed	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK12298	390	obgE GTPase CgtA; Reviewed	99.89
CHL00189	742	infB translation initiation factor 2; Provisional	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.88
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
KOG0072|consensus	182		99.87
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.87
COG0486	454	ThdF Predicted GTPase [General function prediction	99.87
COG1160	444	Predicted GTPases [General function prediction onl	99.87
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.87
KOG1423|consensus	379		99.87
PRK12317	425	elongation factor 1-alpha; Reviewed	99.86
KOG1707|consensus	625		99.86
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.86
KOG0076|consensus	197		99.86
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.86
PRK04004	586	translation initiation factor IF-2; Validated	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
KOG0074|consensus	185		99.86
COG2229	187	Predicted GTPase [General function prediction only	99.85
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.85
KOG3883|consensus	198		99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.85
PRK10218	607	GTP-binding protein; Provisional	99.85
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.85
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.84
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.84
PRK12736	394	elongation factor Tu; Reviewed	99.83
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.83
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.83
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.83
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.83
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.82
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.82
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.82
PRK12735	396	elongation factor Tu; Reviewed	99.82
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.81
KOG1489|consensus	366		99.81
KOG0096|consensus	216		99.81
COG0218	200	Predicted GTPase [General function prediction only	99.81
CHL00071	409	tufA elongation factor Tu	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.8
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.8
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.79
PRK00049	396	elongation factor Tu; Reviewed	99.79
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.78
PLN03127	447	Elongation factor Tu; Provisional	99.77
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.77
COG3596	296	Predicted GTPase [General function prediction only	99.77
COG1163	365	DRG Predicted GTPase [General function prediction	99.77
PLN03126	478	Elongation factor Tu; Provisional	99.76
PTZ00141	446	elongation factor 1- alpha; Provisional	99.76
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.76
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.76
PLN00043	447	elongation factor 1-alpha; Provisional	99.76
COG1084	346	Predicted GTPase [General function prediction only	99.75
KOG4423|consensus	229		99.75
PRK13351	687	elongation factor G; Reviewed	99.75
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.75
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.75
KOG0462|consensus	650		99.74
COG2262	411	HflX GTPases [General function prediction only]	99.74
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.73
COG0536	369	Obg Predicted GTPase [General function prediction	99.73
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.72
KOG0077|consensus	193		99.71
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.71
PRK12739	691	elongation factor G; Reviewed	99.71
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.71
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.71
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.71
PRK00007	693	elongation factor G; Reviewed	99.7
KOG1191|consensus	531		99.7
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.69
KOG0090|consensus	238		99.68
KOG1145|consensus	683		99.67
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.66
PRK09866	741	hypothetical protein; Provisional	99.65
KOG1490|consensus	620		99.64
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.64
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.63
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.63
PRK12740	668	elongation factor G; Reviewed	99.63
PRK09602	396	translation-associated GTPase; Reviewed	99.62
KOG3905|consensus	473		99.62
KOG0461|consensus	522		99.61
PRK14845	1049	translation initiation factor IF-2; Provisional	99.61
PRK13768	253	GTPase; Provisional	99.59
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.58
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.57
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.57
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.55
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.55
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.53
KOG1532|consensus	366		99.52
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.52
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.52
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.5
KOG0082|consensus	354		99.5
KOG1144|consensus	1064		99.49
PTZ00416	836	elongation factor 2; Provisional	99.49
PRK07560	731	elongation factor EF-2; Reviewed	99.48
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.48
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.48
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.47
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.46
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.46
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.46
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.42
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.42
KOG0458|consensus	603		99.42
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.42
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.41
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.4
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.39
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.39
PTZ00258	390	GTP-binding protein; Provisional	99.38
KOG1707|consensus	625		99.37
KOG3886|consensus	295		99.37
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.35
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.35
KOG1486|consensus	364		99.33
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.31
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.3
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.29
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.28
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.27
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.26
KOG3887|consensus	347		99.26
KOG1143|consensus	591		99.25
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.25
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.24
KOG0463|consensus	641		99.2
KOG0705|consensus	749		99.2
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.2
KOG0468|consensus	971		99.17
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.16
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.15
KOG2486|consensus	320		99.14
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.13
KOG0410|consensus	410		99.12
KOG0465|consensus	721		99.08
PRK09601	364	GTP-binding protein YchF; Reviewed	99.04
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.04
KOG1954|consensus	532		99.04
PRK00098	298	GTPase RsgA; Reviewed	99.04
KOG0085|consensus	359		99.03
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.02
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.02
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.02
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.99
KOG1547|consensus	336		98.99
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.99
KOG0460|consensus	449		98.99
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.94
KOG2655|consensus	366		98.93
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.91
PRK12289	352	GTPase RsgA; Reviewed	98.91
KOG1487|consensus	358		98.9
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.89
KOG0099|consensus	379		98.89
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.88
KOG0448|consensus	749		98.86
KOG0464|consensus	753		98.85
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.85
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.83
PRK12288	347	GTPase RsgA; Reviewed	98.81
COG1161	322	Predicted GTPases [General function prediction onl	98.8
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.78
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.76
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.76
KOG0466|consensus	466		98.75
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.74
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.74
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.74
KOG0467|consensus	887		98.72
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.68
KOG0447|consensus	980		98.63
KOG1491|consensus	391		98.63
PRK12288	347	GTPase RsgA; Reviewed	98.63
KOG0459|consensus	501		98.62
PRK10416	318	signal recognition particle-docking protein FtsY;	98.62
PRK12289	352	GTPase RsgA; Reviewed	98.62
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.61
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.6
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.58
PRK13796	365	GTPase YqeH; Provisional	98.54
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.54
PRK14974	336	cell division protein FtsY; Provisional	98.53
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.53
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.53
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.52
KOG1534|consensus	273		98.5
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.5
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.46
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.42
PRK00098	298	GTPase RsgA; Reviewed	98.41
PRK13796	365	GTPase YqeH; Provisional	98.41
COG1162	301	Predicted GTPases [General function prediction onl	98.4
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.4
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.38
KOG1424|consensus	562		98.37
cd03112	158	CobW_like The function of this protein family is u	98.37
PRK01889	356	GTPase RsgA; Reviewed	98.26
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.25
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.24
KOG0469|consensus	842		98.24
KOG1533|consensus	290		98.2
KOG3859|consensus	406		98.19
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.17
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.17
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.17
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.12
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.12
cd03114	148	ArgK-like The function of this protein family is u	98.11
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.07
PRK10867	433	signal recognition particle protein; Provisional	98.05
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.03
KOG2484|consensus	435		98.02
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.02
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.01
COG1162	301	Predicted GTPases [General function prediction onl	98.01
COG0523	323	Putative GTPases (G3E family) [General function pr	97.99
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.98
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.96
TIGR00959	428	ffh signal recognition particle protein. This mode	97.95
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.93
KOG4273|consensus	418		97.9
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.9
PRK13695	174	putative NTPase; Provisional	97.89
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.86
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.86
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.85
COG3523	1188	IcmF Type VI protein secretion system component Va	97.83
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.81
PRK08118	167	topology modulation protein; Reviewed	97.81
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.8
PRK05480	209	uridine/cytidine kinase; Provisional	97.8
cd03110	179	Fer4_NifH_child This protein family's function is	97.79
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.79
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.78
PRK07261	171	topology modulation protein; Provisional	97.76
PRK14737	186	gmk guanylate kinase; Provisional	97.76
KOG2485|consensus	335		97.75
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.74
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.73
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.71
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.7
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.69
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.66
PRK14738	206	gmk guanylate kinase; Provisional	97.65
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.62
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.61
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.61
KOG0780|consensus	483		97.6
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.59
PRK14530	215	adenylate kinase; Provisional	97.58
KOG2423|consensus	572		97.57
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.54
KOG3347|consensus	176		97.54
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.53
PRK14531	183	adenylate kinase; Provisional	97.52
PRK01889	356	GTPase RsgA; Reviewed	97.51
PRK06217	183	hypothetical protein; Validated	97.51
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.51
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.5
PRK00300	205	gmk guanylate kinase; Provisional	97.49
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.49
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.46
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.45
PRK03839	180	putative kinase; Provisional	97.45
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.43
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.42
PF00004	132	AAA: ATPase family associated with various cellula	97.42
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.42
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.41
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.41
PTZ00088	229	adenylate kinase 1; Provisional	97.39
smart00382	148	AAA ATPases associated with a variety of cellular	97.39
PRK08233	182	hypothetical protein; Provisional	97.39
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.39
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.39
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.38
PRK14532	188	adenylate kinase; Provisional	97.37
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.36
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.35
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.34
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.34
PRK13949	169	shikimate kinase; Provisional	97.33
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.32
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.32
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.32
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.32
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.32
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.32
PRK02496	184	adk adenylate kinase; Provisional	97.31
PRK13851	344	type IV secretion system protein VirB11; Provision	97.3
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.3
PRK15453	290	phosphoribulokinase; Provisional	97.3
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.28
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.27
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.27
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.25
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.24
PRK08356	195	hypothetical protein; Provisional	97.24
COG1161	322	Predicted GTPases [General function prediction onl	97.24
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.23
PRK05057	172	aroK shikimate kinase I; Reviewed	97.23
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.23
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.23
PRK05541	176	adenylylsulfate kinase; Provisional	97.23
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.23

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=3.1e-40  Score=228.22  Aligned_cols=189  Identities=57%  Similarity=1.023  Sum_probs=161.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ..+||+++|+.|+|||||+.++..+.+...+.++.+..+...+.+++..+.+.+|||+|++.|...+..+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            56899999999999999999999999988888888877766667888899999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||++++++++.+...|...+....++.|++||+||.|+.+.....+.......+.+..+++..+++.++..+++++||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            99999999999976788877776678999999999999765443333444445667888999999998867999999999


Q ss_pred             cCCHHHHHHHHHHHHhhhcc-ccccccccC
Q psy14754        164 KEGVREVFETATRAALQVKK-KKKGRCRLL  192 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~~~~-~~~~~c~~~  192 (192)
                      |+|++++|+++.+.+..+.. +++.+|.+|
T Consensus       162 g~~v~e~f~~l~~~~~~~~~~~~~~~c~~~  191 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNPTPIKDTKSCVLL  191 (191)
T ss_pred             CCCHHHHHHHHHHHHhccccccCCCCceeC
Confidence            99999999999999988642 233359876

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.5e-38  Score=217.59  Aligned_cols=177  Identities=51%  Similarity=0.975  Sum_probs=154.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++..+.+...+.|+....+...+.+++..+.+.+|||+|++.|...+..+++++|++|+
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            46899999999999999999999999999888888887777777888999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++++++.+...|.+.+....++.|+++|+||+|+.........+.....+.++.+++.++++.+++.+|+++||+
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk  162 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  162 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence            99999999999986689999988888999999999999965433222222223456889999999999996699999999


Q ss_pred             CcCC-HHHHHHHHHHHHh
Q psy14754        163 SKEG-VREVFETATRAAL  179 (192)
Q Consensus       163 ~~~g-i~~~~~~i~~~~~  179 (192)
                      +++| |+++|..+.+.+.
T Consensus       163 ~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         163 QSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            9998 9999999988654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=3.3e-38  Score=215.46  Aligned_cols=175  Identities=53%  Similarity=0.971  Sum_probs=151.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++||+++|++|+|||||++++.++.++..+.++....+...+.+++..+.+.+|||+|++.|......+++++|++|+||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            47999999999999999999999999888888887777667778889999999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++++++.+...|...+....++.|+++|+||+|+...............+.++.+++.++++.++..+|+++||++|
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~  160 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS  160 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence            99999999997668999998888899999999999996543322222222345688999999999999668999999999


Q ss_pred             CC-HHHHHHHHHHHHh
Q psy14754        165 EG-VREVFETATRAAL  179 (192)
Q Consensus       165 ~g-i~~~~~~i~~~~~  179 (192)
                      +| ++++|..+.+...
T Consensus       161 ~~~v~~~F~~~~~~~~  176 (178)
T cd04131         161 EKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            95 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0092|consensus

Probab=100.00  E-value=1.2e-38  Score=209.62  Aligned_cols=170  Identities=34%  Similarity=0.588  Sum_probs=154.2

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDV   79 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~   79 (192)
                      |...++||+++|..++|||||+.++..+.|.+...++++-.+ .+.+......+++.+|||+|+++|+++.+.+++++++
T Consensus         1 ~~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A   80 (200)
T KOG0092|consen    1 MATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA   80 (200)
T ss_pred             CCcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence            677899999999999999999999999999998888887655 6777788889999999999999999999999999999


Q ss_pred             EEEEEECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         80 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      +|+|||+++.+||..++ .|...+.+..+ +.-+.+||||+|+..            .+.+..+++..+++..+ ..+++
T Consensus        81 AivvYDit~~~SF~~aK-~WvkeL~~~~~~~~vialvGNK~DL~~------------~R~V~~~ea~~yAe~~g-ll~~E  146 (200)
T KOG0092|consen   81 AIVVYDITDEESFEKAK-NWVKELQRQASPNIVIALVGNKADLLE------------RREVEFEEAQAYAESQG-LLFFE  146 (200)
T ss_pred             EEEEEecccHHHHHHHH-HHHHHHHhhCCCCeEEEEecchhhhhh------------cccccHHHHHHHHHhcC-CEEEE
Confidence            99999999999999995 89998888764 566678999999987            57899999999999988 59999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +||+++.|++++|..|.+.+......
T Consensus       147 TSAKTg~Nv~~if~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  147 TSAKTGENVNEIFQAIAEKLPCSDPQ  172 (200)
T ss_pred             EecccccCHHHHHHHHHHhccCcccc
Confidence            99999999999999999999887543

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=5.2e-38  Score=216.89  Aligned_cols=187  Identities=55%  Similarity=0.959  Sum_probs=159.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      .||+++|++|+|||||+++|.++.+...+.++....+...+..++..+.+.+||++|++.+...+...++.+|++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            38999999999999999999999998888888777766666677888999999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      ++++++++.+...|+..+....++.|+++|+||+|+...............+.+..+++..+++..+.++++++||++|.
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  160 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR  160 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence            99999999986679988887778899999999999977654443333444455677888888888776789999999999


Q ss_pred             CHHHHHHHHHHHHhhhc--cccccccccC
Q psy14754        166 GVREVFETATRAALQVK--KKKKGRCRLL  192 (192)
Q Consensus       166 gi~~~~~~i~~~~~~~~--~~~~~~c~~~  192 (192)
                      |++++|.++.+.+...+  ....+.|.+|
T Consensus       161 ~v~e~f~~l~~~~~~~~~~~~~~~~~~~~  189 (189)
T cd04134         161 GVNEAFTEAARVALNVRPPHPHSSACTIA  189 (189)
T ss_pred             CHHHHHHHHHHHHhcccccCcCCCcceeC
Confidence            99999999999998755  3456688876

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0084|consensus

Probab=100.00  E-value=9.8e-39  Score=210.87  Aligned_cols=167  Identities=34%  Similarity=0.648  Sum_probs=154.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+++|++|+|||.|+.+|..+.+.+.+..+++-.+ .+.+.++++.+++++|||+||++|+....+++++++++|+
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~   87 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF   87 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence            579999999999999999999999999999998888655 7788999999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||+++.+||..+. .|+..+.++. ++.|.++|+||+|+.+            .+.++.+++++|+..++..+++++||
T Consensus        88 vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~------------~~~v~~~~a~~fa~~~~~~~f~ETSA  154 (205)
T KOG0084|consen   88 VYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKCDLTE------------KRVVSTEEAQEFADELGIPIFLETSA  154 (205)
T ss_pred             EEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeeccccHh------------heecCHHHHHHHHHhcCCcceeeccc
Confidence            99999999999995 8999999887 4679999999999988            58899999999999999633999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        162 KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +++.|+++.|..+...+..+..
T Consensus       155 K~~~NVe~~F~~la~~lk~~~~  176 (205)
T KOG0084|consen  155 KDSTNVEDAFLTLAKELKQRKG  176 (205)
T ss_pred             CCccCHHHHHHHHHHHHHHhcc
Confidence            9999999999999998887754

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.3e-37  Score=212.28  Aligned_cols=173  Identities=55%  Similarity=1.029  Sum_probs=152.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|.+|+|||||++++..+.+...+.|+....+...+...+..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            79999999999999999999999998888888877776666778888999999999999999999889999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      ++++++++.+.+.|...+....++.|+++|+||+|+.......+.+.....+.+..+++..+++..+..+++++||++|+
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~  161 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK  161 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence            99999999997679888887777899999999999977655555555445577888999999988876799999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy14754        166 GVREVFETATRAA  178 (192)
Q Consensus       166 gi~~~~~~i~~~~  178 (192)
                      |++++|+.+...+
T Consensus       162 ~v~~~f~~~~~~~  174 (175)
T cd01874         162 GLKNVFDEAILAA  174 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2.5e-37  Score=217.60  Aligned_cols=178  Identities=47%  Similarity=0.894  Sum_probs=154.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ..+||+++|++|+|||||+++|..+.+...+.|+....+...+.+++..+.+.+|||+|++.|...+..+++++|++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            57899999999999999999999999999888888877777778889999999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||++++++|+.+...|...+....++.|+++|+||+|+.........+.....+.++.+++.++++.++..+|++|||++
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt  171 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT  171 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            99999999998656899999887788999999999998654332222222234678889999999999965799999999


Q ss_pred             cC-CHHHHHHHHHHHHhhh
Q psy14754        164 KE-GVREVFETATRAALQV  181 (192)
Q Consensus       164 ~~-gi~~~~~~i~~~~~~~  181 (192)
                      |+ |++++|..+...+.+.
T Consensus       172 g~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         172 SEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            98 8999999999888765

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=3.1e-37  Score=216.17  Aligned_cols=178  Identities=49%  Similarity=0.958  Sum_probs=155.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++||+|+|++|+|||||+++|..+.++..+.|+....+...+.+++..+.+.+|||+|++.|...+..+++++|++|+||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            47999999999999999999999999988888888777777788889999999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++++++.+...|...+....++.|++||+||+|+..+......+.......++.+++..+++..++.+|++|||+++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~  160 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS  160 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            99999999999878998888888899999999999997654333333333344578899999999999779999999998


Q ss_pred             CC-HHHHHHHHHHHHhhhc
Q psy14754        165 EG-VREVFETATRAALQVK  182 (192)
Q Consensus       165 ~g-i~~~~~~i~~~~~~~~  182 (192)
                      ++ |+++|..+..+.+.+.
T Consensus       161 ~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         161 ERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CcCHHHHHHHHHHHHHhcc
Confidence            85 9999999999887753

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=6.5e-37  Score=208.25  Aligned_cols=173  Identities=49%  Similarity=0.923  Sum_probs=149.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|.+++|||||+.++..+.+...+.++....+...+.+++..+.+.+|||+|++.|...+..++++++++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            68999999999999999999999999888888877776677788889999999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      ++++++|+.+.+.|+..+....++.|++||+||+|+.+...  ........+.+..+++..+++..+..+|+++||+++.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~--~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQ--YLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChh--hhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999986689999887777899999999999965321  0111122345788899999999885579999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q psy14754        166 GVREVFETATRAALQ  180 (192)
Q Consensus       166 gi~~~~~~i~~~~~~  180 (192)
                      ||+++|+.+.+.+..
T Consensus       160 nV~~~F~~~~~~~~~  174 (176)
T cd04133         160 NVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999987643

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=6.4e-37  Score=208.70  Aligned_cols=173  Identities=60%  Similarity=1.052  Sum_probs=149.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      .+||+++|++|+|||||+.++..+.+...+.++....+...+.+++..+.+.+|||||++.+...+..+++++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            47999999999999999999999999888888876666666677888899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++++++.+...|...+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+++++||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            99999999999777988887777789999999999996544333334444456788999999999998679999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy14754        165 EGVREVFETATRA  177 (192)
Q Consensus       165 ~gi~~~~~~i~~~  177 (192)
                      +|++++|+.+.+.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=6.2e-37  Score=211.44  Aligned_cols=179  Identities=63%  Similarity=1.124  Sum_probs=152.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||+++|.++.+...+.++....+...+... +..+.+.+|||||++.+...+...++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999998887777776665555555 67789999999999999988888999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++++++.+...|+..+....++.|+++|+||.|+....+        ..+.+...+..+++..++..+++++||++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  152 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN--------LDRKVTPAQAESVAKKQGAFAYLECSAKTM  152 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc--------ccCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence            999999999997678888877667899999999999865321        124566778888888888558999999999


Q ss_pred             CCHHHHHHHHHHHHhhhc-------cccccccccC
Q psy14754        165 EGVREVFETATRAALQVK-------KKKKGRCRLL  192 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~~~-------~~~~~~c~~~  192 (192)
                      .|++++|..+.+.+...+       .+++.+|.+|
T Consensus       153 ~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~  187 (187)
T cd04132         153 ENVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL  187 (187)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence            999999999999999874       3456789886

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0394|consensus

Probab=100.00  E-value=2.5e-37  Score=201.72  Aligned_cols=168  Identities=30%  Similarity=0.574  Sum_probs=152.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      -+||+++|++|+|||||++++.+.+|...+..+++..+ .+.+.++++.+.+++|||+|+++|.++...+++.+|.++++
T Consensus         9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlv   88 (210)
T KOG0394|consen    9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLV   88 (210)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEE
Confidence            39999999999999999999999999999888887655 78889999999999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      ||+.++.+|+.+ +.|...+....     ...|.||+|||+|+....          .+.++...++.+|...+.+|||+
T Consensus        89 ydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~----------~r~VS~~~Aq~WC~s~gnipyfE  157 (210)
T KOG0394|consen   89 YDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK----------SRQVSEKKAQTWCKSKGNIPYFE  157 (210)
T ss_pred             eecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc----------cceeeHHHHHHHHHhcCCceeEE
Confidence            999999999999 58888776544     257999999999997632          37899999999999999999999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +||++..|+++.|..+.+.++....
T Consensus       158 tSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  158 TSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             ecccccccHHHHHHHHHHHHHhccc
Confidence            9999999999999999999887653

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.5e-36  Score=208.64  Aligned_cols=165  Identities=27%  Similarity=0.447  Sum_probs=145.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|..|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.|...+..+++.+|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            468999999999999999999999888776655554433 4556778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++++++.+ ..|++.+....++.|++||+||.|+..            .+.++.++++.+++..+ ++++++||+
T Consensus        85 VfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~------------~~~v~~~~~~~~a~~~~-~~~~e~SAk  150 (189)
T cd04121          85 VYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAF------------KRQVATEQAQAYAERNG-MTFFEVSPL  150 (189)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchh------------ccCCCHHHHHHHHHHcC-CEEEEecCC
Confidence            9999999999999 489999988778999999999999965            35677888999998887 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +|.|++++|+++.+.+...+
T Consensus       151 ~g~~V~~~F~~l~~~i~~~~  170 (189)
T cd04121         151 CNFNITESFTELARIVLMRH  170 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999887654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=4.8e-36  Score=204.76  Aligned_cols=173  Identities=72%  Similarity=1.203  Sum_probs=151.4

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID   87 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   87 (192)
                      |+|+|++|+|||||++++.++.+...+.++....+...+..++..+.+.+|||||++.+...+...++.+|++|+|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            68999999999999999999999888888877777667777888899999999999999999999999999999999999


Q ss_pred             ChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCH
Q psy14754         88 SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGV  167 (192)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (192)
                      ++++++.+...|+..+....++.|+++|+||+|+.................++.+++..+++..+..+++++||+++.|+
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  160 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV  160 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence            99999999777999988877899999999999997654444444444456678888999999988669999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy14754        168 REVFETATRAALQ  180 (192)
Q Consensus       168 ~~~~~~i~~~~~~  180 (192)
                      +++|+.+.+.+..
T Consensus       161 ~~lf~~l~~~~~~  173 (174)
T smart00174      161 REVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=1.2e-35  Score=202.81  Aligned_cols=174  Identities=55%  Similarity=1.006  Sum_probs=153.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+...++.+|++++|+|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999988877777766666667778888899999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      ++++++++.+.+.|...+....++.|+++++||+|+.+.............+.++.+++..+++.++..+++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            99999999997789888877677899999999999977666555566666678888899999998887789999999999


Q ss_pred             CHHHHHHHHHHHHh
Q psy14754        166 GVREVFETATRAAL  179 (192)
Q Consensus       166 gi~~~~~~i~~~~~  179 (192)
                      |++++|+.+..+++
T Consensus       161 gi~~~f~~~~~~~~  174 (174)
T cd04135         161 GLKTVFDEAILAIL  174 (174)
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999988763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=7.2e-36  Score=206.99  Aligned_cols=163  Identities=28%  Similarity=0.572  Sum_probs=142.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +.|+++|..|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|...+..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            4799999999999999999999999888777766444 556778888899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      |++++++++.+. .|+..+.... ++.|+++|+||+|+..            .+.+...++.++++....++++++||++
T Consensus        81 Dvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~------------~~~v~~~~~~~~a~~~~~~~~~etSAkt  147 (202)
T cd04120          81 DITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCET------------DREISRQQGEKFAQQITGMRFCEASAKD  147 (202)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccc------------ccccCHHHHHHHHHhcCCCEEEEecCCC
Confidence            999999999995 7888887654 5799999999999865            3567778888888876446899999999


Q ss_pred             cCCHHHHHHHHHHHHhhh
Q psy14754        164 KEGVREVFETATRAALQV  181 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~~  181 (192)
                      |.||+++|+++.+.+...
T Consensus       148 g~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         148 NFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999888654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0078|consensus

Probab=100.00  E-value=3.1e-36  Score=201.76  Aligned_cols=166  Identities=36%  Similarity=0.630  Sum_probs=154.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+++|++++|||+++.++..+.+...+..+.+-.+ .+.+..++..+.+++|||+||++|+.....+++.|+++++
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~L   90 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILL   90 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEE
Confidence            568999999999999999999999999999888887655 7788899999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||+++..+|+++. .|+..+..+.+ ++|.++||||+|+..            .+.++.+.++.++..++ ++|+++||
T Consensus        91 vyDitne~Sfeni~-~W~~~I~e~a~~~v~~~LvGNK~D~~~------------~R~V~~e~ge~lA~e~G-~~F~EtSA  156 (207)
T KOG0078|consen   91 VYDITNEKSFENIR-NWIKNIDEHASDDVVKILVGNKCDLEE------------KRQVSKERGEALAREYG-IKFFETSA  156 (207)
T ss_pred             EEEccchHHHHHHH-HHHHHHHhhCCCCCcEEEeeccccccc------------cccccHHHHHHHHHHhC-CeEEEccc
Confidence            99999999999996 59999999885 899999999999987            68899999999999998 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        162 KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ++|.||++.|-.+.+.+..+..
T Consensus       157 k~~~NI~eaF~~La~~i~~k~~  178 (207)
T KOG0078|consen  157 KTNFNIEEAFLSLARDILQKLE  178 (207)
T ss_pred             cCCCCHHHHHHHHHHHHHhhcc
Confidence            9999999999999999986543

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=205.24  Aligned_cols=167  Identities=35%  Similarity=0.542  Sum_probs=144.2

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI   80 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   80 (192)
                      |++.++||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus         1 ~~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i   80 (189)
T PTZ00369          1 MASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF   80 (189)
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence            67789999999999999999999999999888777777777767777888899999999999999999999999999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      ++|||++++++++.+. .|...+....  ++.|+++|+||+|+..            .+.+...++..+++.++ .++++
T Consensus        81 ilv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~------------~~~i~~~~~~~~~~~~~-~~~~e  146 (189)
T PTZ00369         81 LCVYSITSRSSFEEIA-SFREQILRVKDKDRVPMILVGNKCDLDS------------ERQVSTGEGQELAKSFG-IPFLE  146 (189)
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc------------ccccCHHHHHHHHHHhC-CEEEE
Confidence            9999999999999985 6776665543  4789999999999865            24455666777777776 59999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhh
Q psy14754        159 CSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +||++|.|++++|.++.+.+...
T Consensus       147 ~Sak~~~gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        147 TSAKQRVNVDEAFYELVREIRKY  169 (189)
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999888765

>KOG0098|consensus

Probab=100.00  E-value=4e-36  Score=196.46  Aligned_cols=166  Identities=31%  Similarity=0.574  Sum_probs=153.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+|++++|+.|+|||+|+.++....|......+.+-.+ .+.+.+++..+++++|||+|++.|++.+..+++.+.++|
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            4689999999999999999999999999988888877655 678899999999999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|||++..++|.++. .|+..++.+. ++.-+++++||+|+..            .+.++.++++.|+++.+ +.++++|
T Consensus        84 LVydit~r~sF~hL~-~wL~D~rq~~~~NmvImLiGNKsDL~~------------rR~Vs~EEGeaFA~ehg-LifmETS  149 (216)
T KOG0098|consen   84 LVYDITRRESFNHLT-SWLEDARQHSNENMVIMLIGNKSDLEA------------RREVSKEEGEAFAREHG-LIFMETS  149 (216)
T ss_pred             EEEEccchhhHHHHH-HHHHHHHHhcCCCcEEEEEcchhhhhc------------cccccHHHHHHHHHHcC-ceeehhh
Confidence            999999999999995 8998888874 8999999999999987            68899999999999977 6899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |++++|++|.|..+.+.++..-
T Consensus       150 akt~~~VEEaF~nta~~Iy~~~  171 (216)
T KOG0098|consen  150 AKTAENVEEAFINTAKEIYRKI  171 (216)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999988764

>KOG0094|consensus

Probab=100.00  E-value=6e-36  Score=197.13  Aligned_cols=165  Identities=36%  Similarity=0.597  Sum_probs=150.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +.+|++++|+.++|||||+++++.+.+...|.++++..+ ...+.+.+..+.+++|||+||++|+++.+.+++++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            458999999999999999999999999999999998666 7788899999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-C-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-P-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||+++..+|++.. .|+....+.. . +.-+++|+||.||.+            .++++.+++...++.++. .|+++|
T Consensus       101 VyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~d------------krqvs~eEg~~kAkel~a-~f~ets  166 (221)
T KOG0094|consen  101 VYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSD------------KRQVSIEEGERKAKELNA-EFIETS  166 (221)
T ss_pred             EEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccc------------hhhhhHHHHHHHHHHhCc-EEEEec
Confidence            99999999999995 8888877654 3 466789999999988            588899999999999995 999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |+.|.||.++|..|...+.+..
T Consensus       167 ak~g~NVk~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  167 AKAGENVKQLFRRIAAALPGME  188 (221)
T ss_pred             ccCCCCHHHHHHHHHHhccCcc
Confidence            9999999999999998888763

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.2e-35  Score=205.25  Aligned_cols=172  Identities=35%  Similarity=0.610  Sum_probs=144.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      ||+++|.+|+|||||+++|..+.+...+.++.+..+.....+++..+.+.+|||||++.|...+..+++.+|++|+|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999998888777777666656666788888999999999999999999999999999999999


Q ss_pred             CChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         87 DSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      ++..+++.+. .|+..+...    .++.|+++|+||+|+..            .+.+...++..++..++ ++++++||+
T Consensus        81 ~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~SAk  146 (190)
T cd04144          81 TSRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKVY------------EREVSTEEGAALARRLG-CEFIEASAK  146 (190)
T ss_pred             CCHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhccc------------cCccCHHHHHHHHHHhC-CEEEEecCC
Confidence            9999999885 676666543    24789999999999865            24556667778888777 589999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc--------------cccccccccC
Q psy14754        163 SKEGVREVFETATRAALQVK--------------KKKKGRCRLL  192 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~--------------~~~~~~c~~~  192 (192)
                      +|.|++++|+++.+.+...+              .+++.+|.+|
T Consensus       147 ~~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         147 TNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             CCCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            99999999999999887653              2445678775

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=8.6e-35  Score=198.35  Aligned_cols=171  Identities=49%  Similarity=0.904  Sum_probs=147.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|+|||||+.++.++.+...+.++..+.+...+.+++..+.+.+||+||++.+...+..+++++|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999999888887777766666667778888999999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      ++++++++.+.+.|+..+....++.|+++++||.|+...............+.+..+++..+++..+..+++++||++|.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            99999999987788888877667899999999999976543333344444577788889999998886699999999999


Q ss_pred             CHHHHHHHHHH
Q psy14754        166 GVREVFETATR  176 (192)
Q Consensus       166 gi~~~~~~i~~  176 (192)
                      |++++|+.+.-
T Consensus       161 ~v~~lf~~~~~  171 (173)
T cd04130         161 NLKEVFDTAIL  171 (173)
T ss_pred             CHHHHHHHHHh
Confidence            99999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4e-35  Score=199.57  Aligned_cols=163  Identities=27%  Similarity=0.528  Sum_probs=142.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      .+||+++|.+|+|||||++++..+.++..+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            57999999999999999999999999887777777666666778888899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |++++.+++.+. .|...+...  .++.|+++|+||+|+..            .+.++.+++..+++.++ ++++++||+
T Consensus        82 d~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilvgNK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~Sa~  147 (172)
T cd04141          82 SVTDRHSFQEAS-EFKKLITRVRLTEDIPLVLVGNKVDLES------------QRQVTTEEGRNLAREFN-CPFFETSAA  147 (172)
T ss_pred             ECCchhHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhhhh------------cCccCHHHHHHHHHHhC-CEEEEEecC
Confidence            999999999996 576666553  25799999999999865            35577788888988887 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhhh
Q psy14754        163 SKEGVREVFETATRAALQV  181 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~  181 (192)
                      +|.||+++|+++.+.+...
T Consensus       148 ~~~~v~~~f~~l~~~~~~~  166 (172)
T cd04141         148 LRHYIDDAFHGLVREIRRK  166 (172)
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999887764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=1.5e-34  Score=197.51  Aligned_cols=174  Identities=93%  Similarity=1.437  Sum_probs=148.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +.||+++|++|||||||++++.++.+...+.++....+...+.+++..+.+.+|||||++.+...+...++++|++++||
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            36899999999999999999999999887777777666566677888899999999999999988888899999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++++++.+.+.|...+....++.|+++|+||.|+.................+...++.+++...+..+++++||++|
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence            99999999998778888888776789999999999987654444444444445566788888888887678999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy14754        165 EGVREVFETATRAA  178 (192)
Q Consensus       165 ~gi~~~~~~i~~~~  178 (192)
                      .|++++|+++.+.+
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0393|consensus

Probab=100.00  E-value=1.8e-35  Score=198.97  Aligned_cols=181  Identities=62%  Similarity=1.086  Sum_probs=169.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+|++|+|+..+|||+|+..+..+.|+..+.|+..+++...+.++ +..+.+.+|||+|+++|..+++..++++|.+|
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35789999999999999999999999999999999999999988995 99999999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +||++.+++++.++.+.|++.+++++++.|+|+||+|.|+..+....+.+.......++.+++..++++.+...|+++||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            99999999999999999999999999999999999999999766566666666778899999999999999999999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        162 KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ++..|++++|+...+++....+
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999988753

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2e-34  Score=200.86  Aligned_cols=164  Identities=24%  Similarity=0.445  Sum_probs=140.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      +||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.++ +..+.+.+|||||++.+...+..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999988887777776544 4455666 7789999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh-----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      ||++++++++.+. .|...+...     ..+.|++||+||+|+..            .+.+..+++.++++..+..++++
T Consensus        81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~------------~~~~~~~~~~~~~~~~~~~~~~e  147 (201)
T cd04107          81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKK------------RLAKDGEQMDQFCKENGFIGWFE  147 (201)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCccc------------ccccCHHHHHHHHHHcCCceEEE
Confidence            9999999999984 777766542     24789999999999964            24567788889998888668999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +||++|.|++++|+++.+.+....
T Consensus       148 ~Sak~~~~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         148 TSAKEGINIEEAMRFLVKNILAND  171 (201)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999988764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0080|consensus

Probab=100.00  E-value=8e-35  Score=185.94  Aligned_cols=165  Identities=31%  Similarity=0.598  Sum_probs=149.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|.+|+|||||+-+|..+.+.+....+++-.+ .+.+.+++..+++.+|||+|+++|+.+++.+++.+.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            459999999999999999999999999888666566444 7788999999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCC--CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++.+++|.++ +.|+..+..++.  ++-.++|+||+|...            .+.++.+++..|++.+++ -|+++|
T Consensus        90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes------------~R~V~reEG~kfAr~h~~-LFiE~S  155 (209)
T KOG0080|consen   90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKES------------ERVVDREEGLKFARKHRC-LFIECS  155 (209)
T ss_pred             EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchh------------cccccHHHHHHHHHhhCc-EEEEcc
Confidence            9999999999999 699999998874  566689999999765            478999999999999995 899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |++.+|++.+|+.+..++++-.
T Consensus       156 Akt~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  156 AKTRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             hhhhccHHHHHHHHHHHHhcCc
Confidence            9999999999999999998753

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3e-34  Score=193.84  Aligned_cols=160  Identities=36%  Similarity=0.588  Sum_probs=136.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+|||||++.|...+..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            47999999999999999999999988877777776666666778888899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |++++++++.+. .|...+...  .++.|+++|+||+|+...            +.+..++...+++.++ .+++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  146 (163)
T cd04136          81 SITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDE------------RVVSREEGQALARQWG-CPFYETSAK  146 (163)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceecHHHHHHHHHHcC-CeEEEecCC
Confidence            999999998885 566666543  357999999999998652            3445566677777777 699999999


Q ss_pred             CcCCHHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRAA  178 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~  178 (192)
                      ++.|++++|+++.+.+
T Consensus       147 ~~~~v~~l~~~l~~~~  162 (163)
T cd04136         147 SKINVDEVFADLVRQI  162 (163)
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.9e-34  Score=194.17  Aligned_cols=161  Identities=34%  Similarity=0.571  Sum_probs=137.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++||+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+.+|||||++.+...+..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            57999999999999999999999888877777777666667778888899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+++..+++.+. .|...+...  .++.|+++|+||+|+...            +.....+...+++.++ .+++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  146 (164)
T cd04175          81 SITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWG-CAFLETSAK  146 (164)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhc------------cEEcHHHHHHHHHHhC-CEEEEeeCC
Confidence            999999999885 566555432  358999999999999762            3445566667777777 599999999


Q ss_pred             CcCCHHHHHHHHHHHHh
Q psy14754        163 SKEGVREVFETATRAAL  179 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~  179 (192)
                      ++.|++++|.++.+.+.
T Consensus       147 ~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         147 AKINVNEIFYDLVRQIN  163 (164)
T ss_pred             CCCCHHHHHHHHHHHhh
Confidence            99999999999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=4.5e-34  Score=193.60  Aligned_cols=162  Identities=31%  Similarity=0.574  Sum_probs=138.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988777666655444 44566788889999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      ||++++++++.+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..+++..+ ++++++||+
T Consensus        82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~  147 (166)
T cd04122          82 YDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ------------RDVTYEEAKQFADENG-LLFLECSAK  147 (166)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CEEEEEECC
Confidence            9999999999985 7777665543 57899999999999762            4566777888888777 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhh
Q psy14754        163 SKEGVREVFETATRAALQ  180 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~  180 (192)
                      +|.|++++|..+.+.+.+
T Consensus       148 ~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         148 TGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=1.7e-33  Score=194.15  Aligned_cols=185  Identities=60%  Similarity=1.001  Sum_probs=150.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +.||+++|++|+|||||++++..+.+...+.++....+...+.+++....+.+||++|++.+.......++.+++++++|
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            46999999999999999999998888776666665555556667778888999999999888877777788999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |+++.++++.+...|...+....++.|+++|+||+|+.......+.  ....+.+..+++..+++.++..+++++||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999977899998877788999999999998653221111  11234566677888888888678999999999


Q ss_pred             CCHHHHHHHHHHHHhhhcccccc-cccc
Q psy14754        165 EGVREVFETATRAALQVKKKKKG-RCRL  191 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~~~~~~~~-~c~~  191 (192)
                      .|++++|+++.+.+..-+++.++ .|.+
T Consensus       159 ~~v~~~f~~l~~~~~~~~~~~~~~~~~~  186 (187)
T cd04129         159 EGVDDVFEAATRAALLVRKSEPGAGCCI  186 (187)
T ss_pred             CCHHHHHHHHHHHHhcccCcccccCccc
Confidence            99999999999988887777654 4544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.2e-33  Score=191.24  Aligned_cols=161  Identities=32%  Similarity=0.631  Sum_probs=136.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+...++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999998877777666433 445556777899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      |++++++++.+. .|...+.... .+.|+++|+||+|+.+.            +....++..++++.++ ++++++||++
T Consensus        82 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  147 (165)
T cd01865          82 DITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDE------------RVVSSERGRQLADQLG-FEFFEASAKE  147 (165)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CEEEEEECCC
Confidence            999999999884 6888877654 47899999999999652            3455666777777777 5899999999


Q ss_pred             cCCHHHHHHHHHHHHhh
Q psy14754        164 KEGVREVFETATRAALQ  180 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~  180 (192)
                      +.|++++|+++.+.+.+
T Consensus       148 ~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         148 NINVKQVFERLVDIICD  164 (165)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999887654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.9e-33  Score=195.62  Aligned_cols=165  Identities=30%  Similarity=0.592  Sum_probs=142.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            468999999999999999999999988777666665433 4455667778899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++++++.+. .|+..+....+..|++||+||+|+..            .+.+...+...++...+ ++++++||+
T Consensus        85 v~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sa~  150 (199)
T cd04110          85 VYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPE------------RKVVETEDAYKFAGQMG-ISLFETSAK  150 (199)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEEECC
Confidence            99999999999984 78888887777899999999999865            24456677778888777 699999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +|.|++++|++|.+.+...+
T Consensus       151 ~~~gi~~lf~~l~~~~~~~~  170 (199)
T cd04110         151 ENINVEEMFNCITELVLRAK  170 (199)
T ss_pred             CCcCHHHHHHHHHHHHHHhh
Confidence            99999999999999998764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0093|consensus

Probab=100.00  E-value=2.1e-34  Score=181.46  Aligned_cols=166  Identities=30%  Similarity=0.590  Sum_probs=148.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+|++++|...+|||||+-++.+..+......+.+..+ .+.+....+.+.+++|||.|++.++..+..++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            456999999999999999999999999887776666555 4444445577999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +||+++.+++..+ +.|...+..++ .+.|+|+++||+|+..            .+.++-+.++.++++++ +.||++||
T Consensus       100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~------------eRvis~e~g~~l~~~LG-fefFEtSa  165 (193)
T KOG0093|consen  100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDS------------ERVISHERGRQLADQLG-FEFFETSA  165 (193)
T ss_pred             EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcc------------ceeeeHHHHHHHHHHhC-hHHhhhcc
Confidence            9999999999998 68999999877 5899999999999987            58899999999999999 69999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        162 KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +.+.|++++|+.+...+.++..
T Consensus       166 K~NinVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  166 KENINVKQVFERLVDIICDKMS  187 (193)
T ss_pred             cccccHHHHHHHHHHHHHHHhh
Confidence            9999999999999999887653

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.4e-33  Score=191.41  Aligned_cols=163  Identities=34%  Similarity=0.625  Sum_probs=139.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+...++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999998888777766444 4556678888999999999999999888889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++++++.+. .|+..+.... .+.|+++|+||+|+.+.            +....+++..++..++ .+++++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  147 (167)
T cd01867          82 VYDITDEKSFENIR-NWMRNIEEHASEDVERMLVGNKCDMEEK------------RVVSKEEGEALADEYG-IKFLETSA  147 (167)
T ss_pred             EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999999985 6888777654 57899999999999752            3455667777887777 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++.|++++|+++.+++..
T Consensus       148 ~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         148 KANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.4e-33  Score=190.63  Aligned_cols=160  Identities=35%  Similarity=0.564  Sum_probs=135.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++||+++|.+|+|||||++++..+.+...+.++........+..++....+.+||+||++.|...+..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            57999999999999999999999999887777666555666777888889999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |++++++++.+. .|...+....  .+.|+++|+||+|+...            +.+...+...++..++ .+++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piviv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  146 (163)
T cd04176          81 SLVNQQTFQDIK-PMRDQIVRVKGYEKVPIILVGNKVDLESE------------REVSSAEGRALAEEWG-CPFMETSAK  146 (163)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhc------------CccCHHHHHHHHHHhC-CEEEEecCC
Confidence            999999999985 5666665432  58999999999998652            3445556677777776 599999999


Q ss_pred             CcCCHHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRAA  178 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~  178 (192)
                      ++.|++++|.++.+.+
T Consensus       147 ~~~~v~~l~~~l~~~l  162 (163)
T cd04176         147 SKTMVNELFAEIVRQM  162 (163)
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.8e-33  Score=190.67  Aligned_cols=161  Identities=33%  Similarity=0.651  Sum_probs=137.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999988777666665433 45566777888999999999999998888899999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      +|+++++++..+. .|+..+.... ++.|+++++||.|+...            +.+..+++..++..++ ++++++||+
T Consensus        82 ~d~~~~~s~~~l~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  147 (166)
T cd01869          82 YDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDK------------RVVDYSEAQEFADELG-IPFLETSAK  147 (166)
T ss_pred             EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECC
Confidence            9999999999995 6888877655 57999999999998652            4456677778888777 599999999


Q ss_pred             CcCCHHHHHHHHHHHHh
Q psy14754        163 SKEGVREVFETATRAAL  179 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~  179 (192)
                      +|.|++++|..+.+.+.
T Consensus       148 ~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         148 NATNVEQAFMTMAREIK  164 (166)
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999999998875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.9e-33  Score=197.94  Aligned_cols=163  Identities=32%  Similarity=0.507  Sum_probs=137.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||++++..+.+...+.++.+... ...+..+...+.+.+|||+|++.|...+..+++.++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            4678999999999999999999999998887777775443 445556777899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|||++++++++.+. .|+..+....++.|+++|+||+|+..             +.+..... .+++..+ ++|+++||
T Consensus        91 lvfD~~~~~s~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~-------------~~v~~~~~-~~~~~~~-~~~~e~SA  154 (219)
T PLN03071         91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAKQV-TFHRKKN-LQYYEISA  154 (219)
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhhhh-------------ccCCHHHH-HHHHhcC-CEEEEcCC
Confidence            999999999999984 79998887778999999999999854             12223333 5555555 68999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++|.|++++|.+|.+.+.+.
T Consensus       155 k~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        155 KSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999988754

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.8e-33  Score=193.34  Aligned_cols=163  Identities=29%  Similarity=0.529  Sum_probs=139.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+...++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999998876666665443 455667778899999999999999989999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      |+++++++..+. .|+..+.... .+.|+++++||.|+.+.            +.+....+..+++..+ ++++++||++
T Consensus        81 d~~~~~s~~~i~-~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~evSa~~  146 (188)
T cd04125          81 DVTDQESFENLK-FWINEINRYARENVIKVIVANKSDLVNN------------KVVDSNIAKSFCDSLN-IPFFETSAKQ  146 (188)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence            999999999995 5888877654 36899999999998752            4456677777887777 4999999999


Q ss_pred             cCCHHHHHHHHHHHHhhhc
Q psy14754        164 KEGVREVFETATRAALQVK  182 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~~~  182 (192)
                      +.|++++|.++.+.+..+.
T Consensus       147 ~~~i~~~f~~l~~~~~~~~  165 (188)
T cd04125         147 SINVEEAFILLVKLIIKRL  165 (188)
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            9999999999999998763

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3e-33  Score=193.93  Aligned_cols=174  Identities=22%  Similarity=0.401  Sum_probs=135.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccccc--------ccccCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRL--------RPLSYPD   76 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~   76 (192)
                      +||+|+|.+|+|||||++++.++.+...+.|+.+... ...+.+++..+.+.+|||||...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999887777765333 445567788899999999997654322        2234689


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      +|++|+|||++++++++.+. .|...+...    .++.|+++|+||+|+...            +....++...++....
T Consensus        81 ad~iilv~D~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~------------~~~~~~~~~~~~~~~~  147 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQQRH------------RFAPRHVLSVLVRKSW  147 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECcccccc------------ccccHHHHHHHHHHhc
Confidence            99999999999999999884 666655443    357999999999999652            3345555666654333


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHhhhccc-----------cccccccC
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAALQVKKK-----------KKGRCRLL  192 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~-----------~~~~c~~~  192 (192)
                      .++|+++||++|.|++++|+.+.+.+..+.++           ++.+|++|
T Consensus       148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (198)
T cd04142         148 KCGYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM  198 (198)
T ss_pred             CCcEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence            36999999999999999999999998887542           35678876

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.3e-33  Score=189.15  Aligned_cols=158  Identities=33%  Similarity=0.632  Sum_probs=137.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.++.+...+.++.+... ...+.+.+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999999877777766544 456677778899999999999999988888999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      |++++++++.+. .|+..+....+ +.|+++|+||.|+..            .+.+..+++..+++.++ .+++++||++
T Consensus        81 d~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa~~  146 (161)
T cd04117          81 DISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQ------------KRQVGDEQGNKLAKEYG-MDFFETSACT  146 (161)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccc------------ccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence            999999999995 68887766553 789999999999865            35567788888988887 5999999999


Q ss_pred             cCCHHHHHHHHHHH
Q psy14754        164 KEGVREVFETATRA  177 (192)
Q Consensus       164 ~~gi~~~~~~i~~~  177 (192)
                      |.|++++|.+|.+.
T Consensus       147 ~~~v~~~f~~l~~~  160 (161)
T cd04117         147 NSNIKESFTRLTEL  160 (161)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.6e-33  Score=193.30  Aligned_cols=163  Identities=28%  Similarity=0.520  Sum_probs=137.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC----------CeEEEEEEEeCCCCCcccccccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD----------SKQVELALWDTAGQEDYDRLRPL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~   72 (192)
                      +.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+.          +..+.+.+||+||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            468999999999999999999999998887776665433 2233332          45688999999999999999999


Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      +++++|++++|||+++++++..+. .|+..+....  ++.|+++|+||+|+.+            .+.+..++..++++.
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~------------~~~v~~~~~~~~~~~  149 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLED------------QRQVSEEQAKALADK  149 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchh------------cCccCHHHHHHHHHH
Confidence            999999999999999999999995 7888776543  5789999999999976            245667778889988


Q ss_pred             cCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        151 INAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ++ ++++++||+++.|++++|+++.+.+.+
T Consensus       150 ~~-~~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         150 YG-IPYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             cC-CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            88 599999999999999999999987764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2.8e-33  Score=196.07  Aligned_cols=172  Identities=26%  Similarity=0.396  Sum_probs=135.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|.+|+|||||+++|..+.+.. +.++.+..+..   .....+.+.+|||||++.|...+..+++.+|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999998865 34544433221   12256789999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc-------hhhhhhccCCCCCHHHHHHHHHHcCC-----
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT-------IKELNKMKQEPVKPEEGRAMAQKINA-----  153 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-----  153 (192)
                      ++++++++.+...|........++.|++||+||+|+..+...       .........+.+..+++..+++..+.     
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~  156 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD  156 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence            999999999975565555444467999999999999752111       11111112467888999999988762     


Q ss_pred             --------ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        154 --------FAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       154 --------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                              .+|+++||++|.||+++|..+.+.+...
T Consensus       157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~  192 (220)
T cd04126         157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL  192 (220)
T ss_pred             ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                    4899999999999999999999888754

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0087|consensus

Probab=100.00  E-value=8.7e-34  Score=189.31  Aligned_cols=167  Identities=33%  Similarity=0.565  Sum_probs=153.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+++|++++|||-|+.++..+.|.....++.+-.+ .+.+.++++.++.++|||+||++|+.....+++.+.++++
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll   92 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   92 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence            578999999999999999999999999988888877554 7788899999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||++...+|+++ +.|+..++.+. +++++++|+||+||.+            .+.+..+++..+++..+ ..++++||
T Consensus        93 VYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~------------lraV~te~~k~~Ae~~~-l~f~EtSA  158 (222)
T KOG0087|consen   93 VYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNH------------LRAVPTEDGKAFAEKEG-LFFLETSA  158 (222)
T ss_pred             EEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhh------------ccccchhhhHhHHHhcC-ceEEEecc
Confidence            9999999999988 69999999988 6999999999999987            58889999999999888 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhccc
Q psy14754        162 KSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      ++..|+++.|..+...++..-.+
T Consensus       159 l~~tNVe~aF~~~l~~I~~~vs~  181 (222)
T KOG0087|consen  159 LDATNVEKAFERVLTEIYKIVSK  181 (222)
T ss_pred             cccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888876443

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.7e-33  Score=188.93  Aligned_cols=159  Identities=35%  Similarity=0.604  Sum_probs=134.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            47999999999999999999999998887777777666666677888888999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+++..+++.+. .|...+.+..  .+.|+++|+||+|+..             +.....+..++++..+ .+++++||+
T Consensus        81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  145 (162)
T cd04138          81 AINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAA-------------RTVSSRQGQDLAKSYG-IPYIETSAK  145 (162)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc-------------ceecHHHHHHHHHHhC-CeEEEecCC
Confidence            999999998885 5666555442  4789999999999865             2344556667777666 589999999


Q ss_pred             CcCCHHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRAA  178 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~  178 (192)
                      +|.|++++|+++.+.+
T Consensus       146 ~~~gi~~l~~~l~~~~  161 (162)
T cd04138         146 TRQGVEEAFYTLVREI  161 (162)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.2e-33  Score=189.48  Aligned_cols=159  Identities=40%  Similarity=0.815  Sum_probs=145.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCce-eeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      ||+++|++++|||||+++|.++.+...+.++. .+.....+..+...+.+.+||++|++.+...+...++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999988888876 45557778888999999999999999998888889999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      ++++++++.+. .|++.+....+ +.|++|++||.|+..            .+.++.++++++++.++ .+|+++||+++
T Consensus        81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~  146 (162)
T PF00071_consen   81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSD------------EREVSVEEAQEFAKELG-VPYFEVSAKNG  146 (162)
T ss_dssp             TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGG------------GSSSCHHHHHHHHHHTT-SEEEEEBTTTT
T ss_pred             ccccccccccc-cccccccccccccccceeeeccccccc------------cccchhhHHHHHHHHhC-CEEEEEECCCC
Confidence            99999999996 99999998887 799999999999876            36788899999999999 79999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q psy14754        165 EGVREVFETATRAAL  179 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~  179 (192)
                      .|+.++|..+.+.+.
T Consensus       147 ~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  147 ENVKEIFQELIRKIL  161 (162)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=3.3e-33  Score=189.15  Aligned_cols=158  Identities=30%  Similarity=0.520  Sum_probs=132.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|+|||||+++++++.+...+.++....+...+..+...+.+.+||+||++.+...+...++.++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999988777777766666566677788999999999999999888888899999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         86 IDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      ++++++++.+. .|...+...    .++.|+++|+||+|+..            .+.+...++..++..++ ++++++||
T Consensus        82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~SA  147 (165)
T cd04140          82 VTSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDESH------------KREVSSNEGAACATEWN-CAFMETSA  147 (165)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECccccc------------cCeecHHHHHHHHHHhC-CcEEEeec
Confidence            99999998885 566555543    25799999999999865            23455666677777776 58999999


Q ss_pred             CCcCCHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRA  177 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~  177 (192)
                      ++|+|++++|++|...
T Consensus       148 ~~g~~v~~~f~~l~~~  163 (165)
T cd04140         148 KTNHNVQELFQELLNL  163 (165)
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            9999999999998753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0079|consensus

Probab=100.00  E-value=2e-34  Score=181.69  Aligned_cols=163  Identities=33%  Similarity=0.663  Sum_probs=151.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++.+|+|++|+|||+|+.+|....|...|..+++-.+ .+.+.+++..+++++||++|++.|+.+...++++.+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            5788999999999999999999999999988877555 778889999999999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |+++.+||.+.. .|++.++..++..|-++|+||.|..+            .+.+..++++.|+.+.+ +.+|++|++++
T Consensus        89 DVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~------------RrvV~t~dAr~~A~~mg-ie~FETSaKe~  154 (198)
T KOG0079|consen   89 DVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPE------------RRVVDTEDARAFALQMG-IELFETSAKEN  154 (198)
T ss_pred             ECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCcc------------ceeeehHHHHHHHHhcC-chheehhhhhc
Confidence            999999999995 89999999999999999999999987            57788899999999999 59999999999


Q ss_pred             CCHHHHHHHHHHHHhhhc
Q psy14754        165 EGVREVFETATRAALQVK  182 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~~~  182 (192)
                      +|++..|.-|.+.....+
T Consensus       155 ~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  155 ENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             ccchHHHHHHHHHHHHHH
Confidence            999999999998887765

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=4.7e-33  Score=192.53  Aligned_cols=163  Identities=33%  Similarity=0.608  Sum_probs=136.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      +||+++|++|+|||||++++.++.+.. .+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 3444544333 33456778889999999999999988888899999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      +|++++++++++. .|+..+....+ +.|+++|+||+|+..            .+.+..++...++..++ .+++++||+
T Consensus        81 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~------------~~~~~~~~~~~l~~~~~-~~~~e~Sa~  146 (191)
T cd04112          81 YDITNKASFDNIR-AWLTEIKEYAQEDVVIMLLGNKADMSG------------ERVVKREDGERLAKEYG-VPFMETSAK  146 (191)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccchh------------ccccCHHHHHHHHHHcC-CeEEEEeCC
Confidence            9999999999885 68887776653 789999999999865            24456677778888777 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +|.|++++|.+|.+.+....
T Consensus       147 ~~~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         147 TGLNVELAFTAVAKELKHRK  166 (191)
T ss_pred             CCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999988773

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=4e-33  Score=189.16  Aligned_cols=160  Identities=30%  Similarity=0.582  Sum_probs=136.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998887777766444 456677788899999999999999888888999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      |++++.+++.+. .|...+....      .+.|+++|+||+|+.+            .+....++...++...+ .++++
T Consensus        81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~  146 (168)
T cd04119          81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTK------------HRAVSEDEGRLWAESKG-FKYFE  146 (168)
T ss_pred             ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhccc------------ccccCHHHHHHHHHHcC-CeEEE
Confidence            999999999884 7888776654      3689999999999864            24456777777887777 68999


Q ss_pred             eccCCcCCHHHHHHHHHHHHh
Q psy14754        159 CSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      +||+++.|++++|++|.+.++
T Consensus       147 ~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         147 TSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             EECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=6.4e-33  Score=186.98  Aligned_cols=159  Identities=26%  Similarity=0.480  Sum_probs=132.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++..+.+...+.++.... ......+++..+.+.+|||||++.|...+..+++.+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999998877665554433 2344566788899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++.+++.+ +.|+..+....++.|+++|+||+|+...               ...+...+++..+ ++++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~~~-~~~~~~Sa~~~  143 (161)
T cd04124          81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS---------------VTQKKFNFAEKHN-LPLYYVSAADG  143 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh---------------HHHHHHHHHHHcC-CeEEEEeCCCC
Confidence            99999999888 4788888877778999999999998431               1223445566665 58999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q psy14754        165 EGVREVFETATRAALQV  181 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~~  181 (192)
                      .|++++|+.+.+.+.+.
T Consensus       144 ~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         144 TNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999887764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=3.5e-33  Score=188.51  Aligned_cols=158  Identities=30%  Similarity=0.570  Sum_probs=135.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC--CeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD--SKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+.  ...+.+.+||+||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999988777666665544 3444555  677899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++++++.+. .|...+.....+.|+++|+||+|+...            +.+..+++..+++.++ ++++++||+
T Consensus        81 v~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~  146 (162)
T cd04106          81 VFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLDQ------------AVITNEEAEALAKRLQ-LPLFRTSVK  146 (162)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECC
Confidence            99999999999884 788888877779999999999999762            4456677788888887 599999999


Q ss_pred             CcCCHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRA  177 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~  177 (192)
                      ++.|++++|++|...
T Consensus       147 ~~~~v~~l~~~l~~~  161 (162)
T cd04106         147 DDFNVTELFEYLAEK  161 (162)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=9.3e-33  Score=187.95  Aligned_cols=170  Identities=64%  Similarity=1.172  Sum_probs=142.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|+|||||+++|.+..+...+.++............+..+.+++||+||++.+.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            68999999999999999999999987777777776666666778889999999999999888888888899999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      +++++++......|+..+....++.|+++|+||+|+.......... ......+..+++.++...++..+++++||+++.
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            9999999998888998888877789999999999998754432211 111234556777888888886699999999999


Q ss_pred             CHHHHHHHHHH
Q psy14754        166 GVREVFETATR  176 (192)
Q Consensus       166 gi~~~~~~i~~  176 (192)
                      |+++++++|.+
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=6.1e-33  Score=187.86  Aligned_cols=161  Identities=32%  Similarity=0.562  Sum_probs=136.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+...++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988877666665433 34566677777899999999999998888889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +......+..+++..+..+++++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (165)
T cd01864          82 AYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQ------------REVLFEEACTLAEKNGMLAVLETSA  148 (165)
T ss_pred             EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcCCcEEEEEEC
Confidence            99999999999884 7888776643 57999999999999763            3456677788888887668999999


Q ss_pred             CCcCCHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRA  177 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~  177 (192)
                      ++|.|++++|+++.+.
T Consensus       149 ~~~~~v~~~~~~l~~~  164 (165)
T cd01864         149 KESQNVEEAFLLMATE  164 (165)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=4.5e-33  Score=188.32  Aligned_cols=160  Identities=36%  Similarity=0.581  Sum_probs=135.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|||||||++++.+..+...+.++....+......++..+.+.+||+||++++...+..+++.+|++++|+|
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            48999999999999999999999988877777766666667778888999999999999999998889999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ++++++++.+. .|...+.+..  .+.|+++|+||+|+...            +....+....+++.++ .+++++||++
T Consensus        81 ~~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  146 (164)
T smart00173       81 ITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESE------------RVVSTEEGKELARQWG-CPFLETSAKE  146 (164)
T ss_pred             CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceEcHHHHHHHHHHcC-CEEEEeecCC
Confidence            99999998885 5655554432  37899999999998652            3345566777777777 6999999999


Q ss_pred             cCCHHHHHHHHHHHHh
Q psy14754        164 KEGVREVFETATRAAL  179 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~  179 (192)
                      +.|++++|+++.+.+.
T Consensus       147 ~~~i~~l~~~l~~~~~  162 (164)
T smart00173      147 RVNVDEAFYDLVREIR  162 (164)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=8.9e-33  Score=189.41  Aligned_cols=169  Identities=25%  Similarity=0.469  Sum_probs=137.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|+.|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++.|...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999888888876544 456777888899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++++++.+. .|+..+....+..+.++|+||+|+.......       ......+++.++++..+ .+++++||++|
T Consensus        81 D~t~~~s~~~i~-~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~-------~~~~~~~~~~~~a~~~~-~~~~e~SAk~g  151 (182)
T cd04128          81 DLTRKSTLNSIK-EWYRQARGFNKTAIPILVGTKYDLFADLPPE-------EQEEITKQARKYAKAMK-APLIFCSTSHS  151 (182)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhccccccch-------hhhhhHHHHHHHHHHcC-CEEEEEeCCCC
Confidence            999999999984 7888877654433337889999996421100       01112356777888887 59999999999


Q ss_pred             CCHHHHHHHHHHHHhhhcc
Q psy14754        165 EGVREVFETATRAALQVKK  183 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~~~~  183 (192)
                      .|++++|+++.+.+.+.+.
T Consensus       152 ~~v~~lf~~l~~~l~~~~~  170 (182)
T cd04128         152 INVQKIFKIVLAKAFDLPL  170 (182)
T ss_pred             CCHHHHHHHHHHHHHhcCC
Confidence            9999999999998876543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.2e-32  Score=186.99  Aligned_cols=162  Identities=33%  Similarity=0.596  Sum_probs=138.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++.|...+...++.++++++|+
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            57999999999999999999999998877777776666666777888899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |++++++++... .|...+.+.  ..+.|+++++||.|+...            +....++...+++.++..+++++||+
T Consensus        81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~SA~  147 (168)
T cd04177          81 SVTSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDD------------RQVSREDGVSLSQQWGNVPFYETSAR  147 (168)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHcCCceEEEeeCC
Confidence            999999999885 577666543  347999999999998652            44556667777777776799999999


Q ss_pred             CcCCHHHHHHHHHHHHh
Q psy14754        163 SKEGVREVFETATRAAL  179 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~  179 (192)
                      ++.|++++|+++.+.+.
T Consensus       148 ~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         148 KRTNVDEVFIDLVRQII  164 (168)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999987654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.1e-32  Score=187.50  Aligned_cols=161  Identities=32%  Similarity=0.607  Sum_probs=136.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +..+||+++|++|+|||||++++.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            3568999999999999999999999988877666655433 456677888999999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      +|||++++++++.+. .|...+....     .+.|+++|+||+|+..             +.+..++..++++.++..++
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~  148 (170)
T cd04116          83 LTFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIPE-------------RQVSTEEAQAWCRENGDYPY  148 (170)
T ss_pred             EEEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECccccc-------------cccCHHHHHHHHHHCCCCeE
Confidence            999999999999984 6776554432     4689999999999853             44567778888888876689


Q ss_pred             EEeccCCcCCHHHHHHHHHHH
Q psy14754        157 LECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      +++||+++.|++++|+.+.+.
T Consensus       149 ~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         149 FETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            999999999999999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.4e-32  Score=184.96  Aligned_cols=159  Identities=33%  Similarity=0.551  Sum_probs=131.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|||||||+++++.+.+...+.++..... ...+..+...+.+.+|||||++.+...+...++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999998888776666665433 344455778899999999999999888888999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++++++.+. .|...+.....+.|+++|+||+|+...             ... .+..++.+... .+++++||++|
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~e~Sa~~~  144 (166)
T cd00877          81 DVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDR-------------KVK-AKQITFHRKKN-LQYYEISAKSN  144 (166)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhcccc-------------cCC-HHHHHHHHHcC-CEEEEEeCCCC
Confidence            999999999984 798888887778999999999998631             122 22334555444 68999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy14754        165 EGVREVFETATRAALQ  180 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~  180 (192)
                      +|++++|+++.+.+..
T Consensus       145 ~~v~~~f~~l~~~~~~  160 (166)
T cd00877         145 YNFEKPFLWLARKLLG  160 (166)
T ss_pred             CChHHHHHHHHHHHHh
Confidence            9999999999988865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1e-32  Score=194.03  Aligned_cols=162  Identities=27%  Similarity=0.443  Sum_probs=138.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECC-eEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDS-KQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      +||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++ ..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888877776433 45555544 578999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      ||++++++++.+. .|...+.+..    .+.|+++|+||.|+.+            .+.+..++...+++.++ ++++++
T Consensus        81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~------------~~~v~~~~~~~~~~~~~-~~~~~i  146 (215)
T cd04109          81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEH------------NRTVKDDKHARFAQANG-MESCLV  146 (215)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEE
Confidence            9999999999984 7888887654    2468999999999965            35567778888888887 589999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhh
Q psy14754        160 SAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ||++|+|++++|+++.+.+...
T Consensus       147 SAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         147 SAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999988753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.2e-32  Score=186.44  Aligned_cols=161  Identities=32%  Similarity=0.557  Sum_probs=137.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+...++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            358999999999999999999999988777767766444 5566677777899999999999998888889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.+++.+. .|+..+....+ +.|+++|+||.|+..            .+....++...++...+ .+++++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  147 (165)
T cd01868          82 VYDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRH------------LRAVPTEEAKAFAEKNG-LSFIETSA  147 (165)
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccc------------cccCCHHHHHHHHHHcC-CEEEEEEC
Confidence            99999999999985 78888777654 599999999999865            24456667778887766 58999999


Q ss_pred             CCcCCHHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRAA  178 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~  178 (192)
                      ++|.|++++|+++...+
T Consensus       148 ~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         148 LDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.3e-32  Score=186.08  Aligned_cols=160  Identities=35%  Similarity=0.582  Sum_probs=134.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      .+||+++|++|+|||||++++++..+...+.++....+.....+++..+.+.+|||||++++...+...++.+|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            47999999999999999999999888777677766555556667888889999999999999999989999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |++++.+++.+. .|...+...  ..+.|+++++||+|+..            .+.+...+...+++..+ ++++++||+
T Consensus        82 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~  147 (164)
T cd04145          82 SVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEH------------QRKVSREEGQELARKLK-IPYIETSAK  147 (164)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCccccc------------cceecHHHHHHHHHHcC-CcEEEeeCC
Confidence            999999998885 566655543  24789999999999865            23455666777887777 599999999


Q ss_pred             CcCCHHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRAA  178 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~  178 (192)
                      +|.|++++|+++.+.+
T Consensus       148 ~~~~i~~l~~~l~~~~  163 (164)
T cd04145         148 DRLNVDKAFHDLVRVI  163 (164)
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=2.4e-32  Score=188.80  Aligned_cols=170  Identities=43%  Similarity=0.705  Sum_probs=130.8

Q ss_pred             ceeEEEEcCCCCchhHHHH-HHhhCC-----CCCcccCcee--eeeeEE--------EEECCeEEEEEEEeCCCCCcccc
Q psy14754          5 RKKLVIVGDGACGKTCLLI-VFSKDQ-----FPEVYVPTVF--ENYVAD--------IEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      .+||+++|+.|+|||||+. ++.+..     +...+.|+..  +.+...        ..+++..+.+.+|||+|++..  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            5899999999999999996 555443     3445556653  222221        146778899999999998752  


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchh-h----h--hhccCCCCCH
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIK-E----L--NKMKQEPVKP  141 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~----~--~~~~~~~~~~  141 (192)
                      ....+++++|++|+|||++++++++.+...|...+....++.|+++|+||+|+........ .    +  .....+.++.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4456789999999999999999999996679988887777899999999999865211000 0    0  0001367889


Q ss_pred             HHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        142 EEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      +++..+++.++. +|++|||++|.|++++|+.+.+.
T Consensus       160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999995 99999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=2.3e-32  Score=183.33  Aligned_cols=155  Identities=21%  Similarity=0.366  Sum_probs=127.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|+.|+|||||+.++..+.+...+.+. ...+...+.+++..+.+.+||++|++..     .+++.+|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEE
Confidence            58999999999999999999998887665443 3344566778888889999999998652     35578999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ++++++|+.+. .|+..+....  ++.|+++|+||.|+....          .+.+..+++.++++..+.++|++|||++
T Consensus        75 ~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~e~SAk~  143 (158)
T cd04103          75 LENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISESN----------PRVIDDARARQLCADMKRCSYYETCATY  143 (158)
T ss_pred             CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhcC----------CcccCHHHHHHHHHHhCCCcEEEEecCC
Confidence            99999999995 6877776654  578999999999985321          3567788888898877657999999999


Q ss_pred             cCCHHHHHHHHHHH
Q psy14754        164 KEGVREVFETATRA  177 (192)
Q Consensus       164 ~~gi~~~~~~i~~~  177 (192)
                      +.||+++|..+.+.
T Consensus       144 ~~~i~~~f~~~~~~  157 (158)
T cd04103         144 GLNVERVFQEAAQK  157 (158)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.7e-32  Score=183.97  Aligned_cols=158  Identities=35%  Similarity=0.585  Sum_probs=134.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+...++++|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988776666655433 445667778889999999999999888889999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      |+++++++..+. .|+..+.... ++.|+++++||.|+..            .+.+..++...++...+ ++++++||++
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  146 (161)
T cd04113          81 DITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLAD------------QREVTFLEASRFAQENG-LLFLETSALT  146 (161)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcch------------hccCCHHHHHHHHHHcC-CEEEEEECCC
Confidence            999999999885 6777765443 6899999999999876            24566777788888877 6999999999


Q ss_pred             cCCHHHHHHHHHHH
Q psy14754        164 KEGVREVFETATRA  177 (192)
Q Consensus       164 ~~gi~~~~~~i~~~  177 (192)
                      +.|++++|+++.+.
T Consensus       147 ~~~i~~~~~~~~~~  160 (161)
T cd04113         147 GENVEEAFLKCARS  160 (161)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=3.3e-32  Score=191.38  Aligned_cols=164  Identities=29%  Similarity=0.538  Sum_probs=141.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.++++|+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999988777667666544 5566778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||++++.+++.+. .|+..+.... .+.|+++|+||+|+..            .+.+..+....++...+ ++++++||
T Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~------------~~~~~~~~~~~l~~~~~-~~~~e~SA  156 (216)
T PLN03110         91 VYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNH------------LRSVAEEDGQALAEKEG-LSFLETSA  156 (216)
T ss_pred             EEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhccc------------ccCCCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999999884 7888777654 4799999999999865            35566677788887776 69999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++.|++++|+++.+.+...
T Consensus       157 ~~g~~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        157 LEATNVEKAFQTILLEIYHI  176 (216)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999888764

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=4e-32  Score=184.34  Aligned_cols=163  Identities=31%  Similarity=0.574  Sum_probs=137.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||++++.+..+...+.++.+... ...+..++....+.+||+||++.+...+...++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            358999999999999999999999988777666654433 4556677888899999999999998888889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++++++.+. .|+..+... .++.|+++|+||.|+...            +....++...++...+ .+++++||
T Consensus        83 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa  148 (168)
T cd01866          83 VYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR------------REVSYEEGEAFAKEHG-LIFMETSA  148 (168)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999999985 788877664 368999999999998752            3456677777887776 58999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      ++++|++++|.++.+.+.+
T Consensus       149 ~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         149 KTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=4.1e-32  Score=184.41  Aligned_cols=162  Identities=32%  Similarity=0.537  Sum_probs=135.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      ||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+...++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999999888888776554 4556778888999999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhh-hCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         86 IDSPDSLENIPEKWTPEVKH-FCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~-~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      +++++++..+. .|+..+.+ ..+ ..|+++|+||.|+....          ......+++..+++.++ .+++++||++
T Consensus        82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----------~~~~~~~~~~~~~~~~~-~~~~e~Sa~~  149 (170)
T cd04108          82 LTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPA----------QYALMEQDAIKLAAEMQ-AEYWSVSALS  149 (170)
T ss_pred             CcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCccc----------cccccHHHHHHHHHHcC-CeEEEEECCC
Confidence            99999999985 68877644 333 46799999999986531          11234556677777777 4899999999


Q ss_pred             cCCHHHHHHHHHHHHhh
Q psy14754        164 KEGVREVFETATRAALQ  180 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~  180 (192)
                      +.|++++|+.+.+.+.+
T Consensus       150 g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         150 GENVREFFFRVAALTFE  166 (170)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=3.5e-32  Score=190.53  Aligned_cols=165  Identities=33%  Similarity=0.567  Sum_probs=138.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++++|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            368999999999999999999999988877666665433 444444 456789999999999999998989999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      +|||++++++++.+. .|+..+....  ...|++||+||.|+..            .+.+..++...+++.++ .+++++
T Consensus        81 lv~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~  146 (211)
T cd04111          81 LVFDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLES------------QRQVTREEAEKLAKDLG-MKYIET  146 (211)
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEcccccc------------ccccCHHHHHHHHHHhC-CEEEEE
Confidence            999999999999995 6777776543  2567899999999875            34567777888888888 699999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        160 SAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ||+++.|++++|++|.+.+.+..
T Consensus       147 Sak~g~~v~e~f~~l~~~~~~~~  169 (211)
T cd04111         147 SARTGDNVEEAFELLTQEIYERI  169 (211)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999887663

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.1e-31  Score=186.21  Aligned_cols=166  Identities=25%  Similarity=0.468  Sum_probs=137.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      +||+++|++|+|||||+++|.++.+.. .+.++....+ ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998864 4555655544 45667788889999999999999998888889999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||++++.+++.+ ..|+..+....++.|+++|+||+|+.....        ..+.+...+...++..++ .+++++||++
T Consensus        81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~--------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~  150 (193)
T cd04118          81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR--------SLRQVDFHDVQDFADEIK-AQHFETSSKT  150 (193)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc--------ccCccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence            999999999887 468888877666899999999999865321        123445566777777776 5899999999


Q ss_pred             cCCHHHHHHHHHHHHhhh
Q psy14754        164 KEGVREVFETATRAALQV  181 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~~  181 (192)
                      +.|++++|+++.+.+...
T Consensus       151 ~~gv~~l~~~i~~~~~~~  168 (193)
T cd04118         151 GQNVDELFQKVAEDFVSR  168 (193)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999988765

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=5.1e-32  Score=183.08  Aligned_cols=161  Identities=38%  Similarity=0.677  Sum_probs=136.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999888766666655443 455667777789999999999999988899999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      |++++.+++.+. .|+..+..+. ++.|+++++||+|+..            .+....+....+++..+ ++++++|+++
T Consensus        81 d~~~~~s~~~~~-~~l~~~~~~~~~~~pivvv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sa~~  146 (164)
T smart00175       81 DITNRESFENLK-NWLKELREYADPNVVIMLVGNKSDLED------------QRQVSREEAEAFAEEHG-LPFFETSAKT  146 (164)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhccc------------ccCCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence            999999999885 5888877655 6899999999999865            24455667777887777 5899999999


Q ss_pred             cCCHHHHHHHHHHHHhh
Q psy14754        164 KEGVREVFETATRAALQ  180 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~  180 (192)
                      +.|++++++++.+.+.+
T Consensus       147 ~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      147 NTNVEEAFEELAREILK  163 (164)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999988754

Rab GTPases are implicated in vesicle trafficking.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=5e-32  Score=187.56  Aligned_cols=155  Identities=29%  Similarity=0.518  Sum_probs=131.8

Q ss_pred             EcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCCh
Q psy14754         11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP   89 (192)
Q Consensus        11 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   89 (192)
                      +|.+|+|||||+++++.+.+...+.++.+... ...+.++...+.+.+|||+|++.|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888877777765443 55567788889999999999999999999999999999999999999


Q ss_pred             hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHH
Q psy14754         90 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE  169 (192)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  169 (192)
                      .+++.+. .|...+.+..++.|+++|+||+|+..             +.+..+. ..+++..+ ++|+++||++|.||++
T Consensus        81 ~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~-------------~~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~  144 (200)
T smart00176       81 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKD-------------RKVKAKS-ITFHRKKN-LQYYDISAKSNYNFEK  144 (200)
T ss_pred             HHHHHHH-HHHHHHHHhCCCCCEEEEEECccccc-------------ccCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHH
Confidence            9999985 79998888778999999999999853             1222222 35666666 6999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy14754        170 VFETATRAALQV  181 (192)
Q Consensus       170 ~~~~i~~~~~~~  181 (192)
                      +|.++.+.+...
T Consensus       145 ~F~~l~~~i~~~  156 (200)
T smart00176      145 PFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988664

Ran is involved in the active transport of proteins through nuclear pores.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=5.4e-32  Score=193.02  Aligned_cols=163  Identities=25%  Similarity=0.405  Sum_probs=134.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|.+|+|||||+++++++.+...+.++..+.....+.+++..+.+.+|||+|++.|...+...+..+|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999998877777766666667788888999999999999988887778889999999999


Q ss_pred             CCChhhhhchhhhhHHHHhh----------hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         86 IDSPDSLENIPEKWTPEVKH----------FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      +++.++|+.+. .|...+..          ...+.|+++|+||+|+...            +.+..++..++......++
T Consensus        81 v~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~------------~~v~~~ei~~~~~~~~~~~  147 (247)
T cd04143          81 LDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP------------REVQRDEVEQLVGGDENCA  147 (247)
T ss_pred             CCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEEECccchhc------------cccCHHHHHHHHHhcCCCE
Confidence            99999999984 66665543          2247999999999999652            3455566666655443468


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        156 YLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++++||+++.|++++|++|...+...
T Consensus       148 ~~evSAktg~gI~elf~~L~~~~~~p  173 (247)
T cd04143         148 YFEVSAKKNSNLDEMFRALFSLAKLP  173 (247)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhccc
Confidence            99999999999999999999877544

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=8.6e-32  Score=181.86  Aligned_cols=160  Identities=34%  Similarity=0.617  Sum_probs=136.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ++||+++|++|+|||||++++.+..+.....++.+..+ ...+.++...+.+.+||+||++.+...+...++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999998776566655433 56677888889999999999999988888899999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      +|+++++++.... .|+..+.... ++.|+++++||+|+...            +.....+...+....+ ++++++||+
T Consensus        81 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  146 (163)
T cd01860          81 YDITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESK------------RQVSTEEAQEYADENG-LLFFETSAK  146 (163)
T ss_pred             EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------CcCCHHHHHHHHHHcC-CEEEEEECC
Confidence            9999999999884 7777766554 67999999999998752            3455666777787777 689999999


Q ss_pred             CcCCHHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRAA  178 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~  178 (192)
                      +|.|++++|+++.+.+
T Consensus       147 ~~~~v~~l~~~l~~~l  162 (163)
T cd01860         147 TGENVNELFTEIAKKL  162 (163)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0086|consensus

Probab=100.00  E-value=8.5e-33  Score=175.41  Aligned_cols=164  Identities=32%  Similarity=0.539  Sum_probs=148.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+|++++|+.|+|||.|+.+|..+++.+....+.+..+ .+.+....+.+++++|||+|+++|++....+++++.+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            457999999999999999999999999998888877655 6667778899999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||+++.++|..+. .|+...+... +++-+++++||.|+.+            .+.++..++.+|+++.. +-+.++||
T Consensus        88 VYD~TsrdsfnaLt-nWL~DaR~lAs~nIvviL~GnKkDL~~------------~R~VtflEAs~FaqEne-l~flETSa  153 (214)
T KOG0086|consen   88 VYDITSRDSFNALT-NWLTDARTLASPNIVVILCGNKKDLDP------------EREVTFLEASRFAQENE-LMFLETSA  153 (214)
T ss_pred             EEeccchhhHHHHH-HHHHHHHhhCCCcEEEEEeCChhhcCh------------hhhhhHHHHHhhhcccc-eeeeeecc
Confidence            99999999999995 8999888766 4788899999999988            57899999999999988 48899999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++|+|++|.|-...+.+..+
T Consensus       154 ~TGeNVEEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  154 LTGENVEEAFLKCARTILNK  173 (214)
T ss_pred             cccccHHHHHHHHHHHHHHH
Confidence            99999999999888887765

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.2e-31  Score=182.42  Aligned_cols=160  Identities=31%  Similarity=0.573  Sum_probs=135.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccc-ccccccCCCCCEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYD-RLRPLSYPDTDVILM   82 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~~~~i~   82 (192)
                      .+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999999999999988776666655333 4556678888999999999998886 467788899999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++++.+++.+. .|...+....  .+.|+++|+||+|+..            .+.+...+..+++..++ .+++++|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~S  147 (170)
T cd04115          82 VYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLRE------------QIQVPTDLAQRFADAHS-MPLFETS  147 (170)
T ss_pred             EEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchh------------hcCCCHHHHHHHHHHcC-CcEEEEe
Confidence            99999999999985 7888777653  5799999999999876            34566777888888876 6999999


Q ss_pred             cCC---cCCHHHHHHHHHHHH
Q psy14754        161 AKS---KEGVREVFETATRAA  178 (192)
Q Consensus       161 a~~---~~gi~~~~~~i~~~~  178 (192)
                      |++   +.|++++|..+.+.+
T Consensus       148 a~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         148 AKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             ccCCcCCCCHHHHHHHHHHHh
Confidence            999   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1.2e-31  Score=182.71  Aligned_cols=164  Identities=32%  Similarity=0.580  Sum_probs=135.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.+..+.....++.+..+ ...+...+..+.+.+||+||++.+...+..+++.+|++|+++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988776666655333 445667778889999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      |++++.+++... .|...+....     .+.|+++|+||+|+..+            +....++...+.+..+..+++++
T Consensus        81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~  147 (172)
T cd01862          81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEK------------RQVSTKKAQQWCQSNGNIPYFET  147 (172)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcCCceEEEE
Confidence            999999888874 6766554433     27999999999999752            33456667777777776799999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        160 SAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |+++|.|++++|+++.+.+.+..
T Consensus       148 Sa~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862         148 SAKEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999887753

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=5.9e-32  Score=183.05  Aligned_cols=159  Identities=30%  Similarity=0.498  Sum_probs=131.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-ccccccccCCCCCEEEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-YDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~~i~v~d   85 (192)
                      ||+++|++|+|||||+++++...+...+.++....+.....+++..+.+.+||+||+.. +...+...++.+|++++|+|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            69999999999999999999988877666666555555667788889999999999885 34456677889999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      ++++++++.+. .|...+...   ..+.|+++|+||+|+..            .+.+..++...+++..+ .+++++||+
T Consensus        81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa~  146 (165)
T cd04146          81 ITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLH------------YRQVSTEEGEKLASELG-CLFFEVSAA  146 (165)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHH------------hCccCHHHHHHHHHHcC-CEEEEeCCC
Confidence            99999999884 677776664   34899999999999865            24566777788888887 599999999


Q ss_pred             Cc-CCHHHHHHHHHHHHh
Q psy14754        163 SK-EGVREVFETATRAAL  179 (192)
Q Consensus       163 ~~-~gi~~~~~~i~~~~~  179 (192)
                      ++ .|++++|..+.+.+.
T Consensus       147 ~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         147 EDYDGVHSVFHELCREVR  164 (165)
T ss_pred             CCchhHHHHHHHHHHHHh
Confidence            99 599999999988664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.9e-31  Score=187.18  Aligned_cols=165  Identities=30%  Similarity=0.605  Sum_probs=136.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|++..+... .++.+.. ....+.+++..+.+.+|||||++.|...+..+++.+|++++
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            578999999999999999999999887543 4444433 34456677778899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++++++++.+.+.|...+....  .+.|+++|+||+|+...            +.+..++...++...+ ++++++|
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~S  158 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------------RDVSREEGMALAKEHG-CLFLECS  158 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CEEEEEe
Confidence            9999999999999777877766443  46899999999998752            3455666777777776 5899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |+++.|++++|++|.+.+....
T Consensus       159 Ak~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        159 AKTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999987654

>KOG0091|consensus

Probab=100.00  E-value=1.4e-32  Score=176.27  Aligned_cols=165  Identities=32%  Similarity=0.573  Sum_probs=145.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +.++++++|++-+|||+|+..+..+++++-.+|+.+-.+ .+-++. ++..+++++|||+|+++|++.+..+++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            578999999999999999999999999999888887544 333333 567899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC--CCCcE-EEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPI-ILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      +|||+++.++|+++ +.|+.....+.  |.+++ .+|++|+|+..            .++++.++++.++.+.+ ..|++
T Consensus        87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S------------qRqVt~EEaEklAa~hg-M~FVE  152 (213)
T KOG0091|consen   87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQS------------QRQVTAEEAEKLAASHG-MAFVE  152 (213)
T ss_pred             EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhh------------hccccHHHHHHHHHhcC-ceEEE
Confidence            99999999999999 58888776654  45555 68999999987            68999999999999999 59999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +||++|.|+++.|..+.+.++..-
T Consensus       153 TSak~g~NVeEAF~mlaqeIf~~i  176 (213)
T KOG0091|consen  153 TSAKNGCNVEEAFDMLAQEIFQAI  176 (213)
T ss_pred             ecccCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999998887753

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2e-31  Score=179.66  Aligned_cols=158  Identities=36%  Similarity=0.599  Sum_probs=131.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++++..+...+.++.+.. ....+..++..+.+.+||+||+..+...+...++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            489999999999999999999998877766666543 3455666777789999999999999888888999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      |++++++++.+. .|+..+.... .+.|+++++||+|+..            ......++...+++..+ ++++++||++
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  146 (161)
T cd01861          81 DITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSD------------KRQVSTEEGEKKAKELN-AMFIETSAKA  146 (161)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhccc------------cCccCHHHHHHHHHHhC-CEEEEEeCCC
Confidence            999999999885 6777665433 3699999999999864            24456667777777776 6899999999


Q ss_pred             cCCHHHHHHHHHHH
Q psy14754        164 KEGVREVFETATRA  177 (192)
Q Consensus       164 ~~gi~~~~~~i~~~  177 (192)
                      +.|++++++++.+.
T Consensus       147 ~~~v~~l~~~i~~~  160 (161)
T cd01861         147 GHNVKELFRKIASA  160 (161)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2.3e-31  Score=186.41  Aligned_cols=164  Identities=29%  Similarity=0.568  Sum_probs=139.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +.+||+++|++|+|||||++++.+..+...+.++....+ ...+.+.+..+.+.+||++|++.+...+...++.+|++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999988776666655443 4456677888899999999999998888889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||++++++++.+. .|+..+.... ++.|+++++||+|+..            .+.+..+++.++++.++ ++++++||
T Consensus        85 v~D~~~~~s~~~l~-~~~~~~~~~~~~~~piiiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sa  150 (210)
T PLN03108         85 VYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHG-LIFMEASA  150 (210)
T ss_pred             EEECCcHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCcc------------ccCCCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999999885 6776655443 5799999999999876            34567788888888887 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++.|++++|.++.+.+.+.
T Consensus       151 ~~~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        151 KTAQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988764

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=5.4e-31  Score=177.62  Aligned_cols=157  Identities=34%  Similarity=0.640  Sum_probs=131.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.+..+.....++.+..+ ...+.+....+.+.+||+||++.+...+...++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999888765566555443 344566777889999999999999888888999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |++++.+++.+. .|...+..+.  ++.|+++++||+|+..             .....++..+++...+ ++++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  145 (161)
T cd01863          81 DVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKEN-------------REVTREEGLKFARKHN-MLFIETSAK  145 (161)
T ss_pred             ECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCcccc-------------cccCHHHHHHHHHHcC-CEEEEEecC
Confidence            999999999885 5888777654  5799999999999974             2344566777777776 699999999


Q ss_pred             CcCCHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRA  177 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~  177 (192)
                      +|.|++++++.+.+.
T Consensus       146 ~~~gi~~~~~~~~~~  160 (161)
T cd01863         146 TRDGVQQAFEELVEK  160 (161)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0088|consensus

Probab=100.00  E-value=1.3e-32  Score=175.49  Aligned_cols=166  Identities=30%  Similarity=0.608  Sum_probs=148.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|..-+|||||+-+++.++|......+....+ .+.+.+.+....+.+|||+|+++|..+.+.+++.+++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            4689999999999999999999999999887665554444 667778888999999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|||++|+++|+..+ .|...++... ..+-++||+||+|+.+            .+.++.+++..+++.-+. .|+++|
T Consensus        91 LVyDITDrdSFqKVK-nWV~Elr~mlGnei~l~IVGNKiDLEe------------eR~Vt~qeAe~YAesvGA-~y~eTS  156 (218)
T KOG0088|consen   91 LVYDITDRDSFQKVK-NWVLELRTMLGNEIELLIVGNKIDLEE------------ERQVTRQEAEAYAESVGA-LYMETS  156 (218)
T ss_pred             EEEeccchHHHHHHH-HHHHHHHHHhCCeeEEEEecCcccHHH------------hhhhhHHHHHHHHHhhch-hheecc
Confidence            999999999999995 8988887754 4678899999999987            588999999999999885 899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |+++.||.++|+.+...+.+..
T Consensus       157 Ak~N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  157 AKDNVGISELFESLTAKMIEHS  178 (218)
T ss_pred             cccccCHHHHHHHHHHHHHHHh
Confidence            9999999999999999998874

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=3e-31  Score=180.04  Aligned_cols=164  Identities=21%  Similarity=0.264  Sum_probs=132.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCC-CcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI   80 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   80 (192)
                      +.-+||+++|.+|+|||||++++.++.+. ..+.++....+ ...+.+++....+.+||++|++.+...+..+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            34689999999999999999999999988 77777776554 34566777788999999999999988888889999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      ++|+|++++.+++.+. .|...+.. ..+.|+++|+||+|+.+.            +.....+..++++.++..+++++|
T Consensus        82 llv~d~~~~~s~~~~~-~~~~~~~~-~~~~p~iiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~S  147 (169)
T cd01892          82 CLVYDSSDPKSFSYCA-EVYKKYFM-LGEIPCLFVAAKADLDEQ------------QQRYEVQPDEFCRKLGLPPPLHFS  147 (169)
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHhcc-CCCCeEEEEEEccccccc------------ccccccCHHHHHHHcCCCCCEEEE
Confidence            9999999999988774 56655432 237999999999998652            112223445667777643568999


Q ss_pred             cCCcCCHHHHHHHHHHHHhh
Q psy14754        161 AKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~  180 (192)
                      |++++|++++|+.+.+.+..
T Consensus       148 a~~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         148 SKLGDSSNELFTKLATAAQY  167 (169)
T ss_pred             eccCccHHHHHHHHHHHhhC
Confidence            99999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01893 Miro1 Miro1 subfamily

Probab=100.00  E-value=2.4e-31  Score=180.20  Aligned_cols=164  Identities=31%  Similarity=0.510  Sum_probs=127.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|+|||||++++.++.++..+. +..........+....+.+.+|||||++.+...+...++.+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCC-CcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999998876533 3333333444556678899999999998887777777899999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC-ceEEEeccCCc
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA-FAYLECSAKSK  164 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  164 (192)
                      ++++.+++.+...|...++...++.|+++|+||+|+.+.....          ...++...+...+.. .+++++||+++
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~Sa~~~  149 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA----------GLEEEMLPIMNEFREIETCVECSAKTL  149 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh----------HHHHHHHHHHHHHhcccEEEEeccccc
Confidence            9999999998768988888766789999999999997632210          012223333333332 37999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy14754        165 EGVREVFETATRAALQ  180 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~  180 (192)
                      .|++++|+.+.+.+..
T Consensus       150 ~~v~~lf~~~~~~~~~  165 (166)
T cd01893         150 INVSEVFYYAQKAVLH  165 (166)
T ss_pred             cCHHHHHHHHHHHhcC
Confidence            9999999999887754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0095|consensus

Probab=100.00  E-value=3e-32  Score=172.32  Aligned_cols=164  Identities=29%  Similarity=0.574  Sum_probs=145.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      -+||+++|..|+|||.|+.++..+-|+.....+++-.+ .+.+.++++.+++++|||+|+++|++....+++.++++|++
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            57999999999999999999999999988777777555 67888999999999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCC-CcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      ||++...+|+-+. .|+..+..+..+ +--|+|+||+|+.+            .+.+..+.+++|.+... ..|+++||+
T Consensus        87 ydiscqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~d------------rrevp~qigeefs~~qd-myfletsak  152 (213)
T KOG0095|consen   87 YDISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLAD------------RREVPQQIGEEFSEAQD-MYFLETSAK  152 (213)
T ss_pred             EecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhh------------hhhhhHHHHHHHHHhhh-hhhhhhccc
Confidence            9999999999995 799999887754 45589999999987            46788888999998855 578899999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +.+|++.+|..+.-.+....
T Consensus       153 ea~nve~lf~~~a~rli~~a  172 (213)
T KOG0095|consen  153 EADNVEKLFLDLACRLISEA  172 (213)
T ss_pred             chhhHHHHHHHHHHHHHHHH
Confidence            99999999999877766543

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=4e-31  Score=178.80  Aligned_cols=159  Identities=31%  Similarity=0.542  Sum_probs=129.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC--CCCCcccCceeeee-eEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD--QFPEVYVPTVFENY-VADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +||+++|++|||||||++++...  .++..+.++.+... ...+..+ +..+.+.+||+||++.+...+...++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  56666666665333 3334443 56789999999999988888888999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|+|+++++++..+ ..|+..+....++.|+++|+||+|+.+.            ..+.......+...++ .+++++||
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  146 (164)
T cd04101          81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADK------------AEVTDAQAQAFAQANQ-LKFFKTSA  146 (164)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEeC
Confidence            99999999999887 4788887776567999999999998652            3345555556666666 58999999


Q ss_pred             CCcCCHHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRAA  178 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~  178 (192)
                      +++.|++++|+.+.+.+
T Consensus       147 ~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         147 LRGVGYEEPFESLARAF  163 (164)
T ss_pred             CCCCChHHHHHHHHHHh
Confidence            99999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=5.7e-31  Score=177.91  Aligned_cols=160  Identities=34%  Similarity=0.560  Sum_probs=133.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|+|||||++++....+...+.++....+......++..+.+.+||+||+..+...+...++.++++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999888777777666666666778888999999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ++++.++..... |...+...  ..+.|+++|+||+|+...            ..........+.+.++ .+++++||++
T Consensus        81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  146 (164)
T cd04139          81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDK------------RQVSSEEAANLARQWG-VPYVETSAKT  146 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEeeCCC
Confidence            999999988864 54444443  247999999999998652            2334455566777776 5999999999


Q ss_pred             cCCHHHHHHHHHHHHh
Q psy14754        164 KEGVREVFETATRAAL  179 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~  179 (192)
                      +.|++++|+++.+.+.
T Consensus       147 ~~gi~~l~~~l~~~~~  162 (164)
T cd04139         147 RQNVEKAFYDLVREIR  162 (164)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=4.4e-31  Score=181.20  Aligned_cols=174  Identities=30%  Similarity=0.513  Sum_probs=141.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      .||+++|++|+|||||++++.+..+...+.++...............+.+.+||+||++++...+..++..+++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            68999999999999999999998887766666655555666777778889999999999998888889999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      +++..+++.+...|...+.... .+.|+++++||+|+...            +.....+...+++.++ .+++++||+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  148 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ------------RQVSTEEGKELAESWG-AAFLESSAREN  148 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc------------CccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence            9999999988655555544332 47899999999998652            3344555666777666 58999999999


Q ss_pred             CCHHHHHHHHHHHHhhhccc----cccccccC
Q psy14754        165 EGVREVFETATRAALQVKKK----KKGRCRLL  192 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~~~~~----~~~~c~~~  192 (192)
                      .|++++|+++.+.+......    .+.+|.+|
T Consensus       149 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  180 (180)
T cd04137         149 ENVEEAFELLIEEIEKVENPLDPGQKKKCSIM  180 (180)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCCCCCCCceeC
Confidence            99999999999988876543    23478776

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04148 RGK RGK subfamily

Probab=99.98  E-value=8.5e-31  Score=184.70  Aligned_cols=161  Identities=25%  Similarity=0.396  Sum_probs=129.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCC-CcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccccccCC-CCCEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYP-DTDVILM   82 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~~~~i~   82 (192)
                      +||+++|++|+|||||++++..+.+. ..+.++.. +.....+.+++....+.+||+||++.+  ....+++ .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence            58999999999999999999888876 55555554 444566777888899999999998722  2334556 8999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++++.+++.+. .|+..+....  .+.|+++|+||+|+..            .+.+..+++..++..++ .+++++|
T Consensus        79 V~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~S  144 (221)
T cd04148          79 VYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLAR------------SREVSVQEGRACAVVFD-CKFIETS  144 (221)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhccc------------cceecHHHHHHHHHHcC-CeEEEec
Confidence            99999999999885 6777666543  5799999999999865            24456667777887777 4899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |+++.|++++|+++.+.+...+
T Consensus       145 A~~~~gv~~l~~~l~~~~~~~~  166 (221)
T cd04148         145 AGLQHNVDELLEGIVRQIRLRR  166 (221)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999887543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04123 Rab21 Rab21 subfamily

Probab=99.98  E-value=1.5e-30  Score=175.55  Aligned_cols=159  Identities=32%  Similarity=0.623  Sum_probs=130.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.+..+.....++..... ...+...+....+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999888765554543333 444556677788999999999999988988899999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      |++++++++.+. .|...+..... +.|+++++||+|+...            +.....+..++.+.++ .+++++|+++
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~  146 (162)
T cd04123          81 DITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQ------------RVVSKSEAEEYAKSVG-AKHFETSAKT  146 (162)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence            999999998884 67777666543 7899999999998752            3445566666777776 5899999999


Q ss_pred             cCCHHHHHHHHHHHH
Q psy14754        164 KEGVREVFETATRAA  178 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~  178 (192)
                      ++|++++++++.+.+
T Consensus       147 ~~gi~~~~~~l~~~~  161 (162)
T cd04123         147 GKGIEELFLSLAKRM  161 (162)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=3.5e-31  Score=179.53  Aligned_cols=156  Identities=21%  Similarity=0.293  Sum_probs=118.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||++++..+.+.. +.++.+.... ..  ....+.+.+||+||++.+...+..+++.+|++|+
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            467899999999999999999998877653 3444443322 22  2356889999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH---c-CCceEE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK---I-NAFAYL  157 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~  157 (192)
                      |||++++.++....+.|...+.. ..++.|+++|+||+|+...              ...++..++.+.   . ..++++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~  148 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--------------MKPHEIQEKLGLTRIRDRNWYVQ  148 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--------------CCHHHHHHHcCCCccCCCcEEEE
Confidence            99999998898886555555543 2457999999999998542              223333333211   1 124789


Q ss_pred             EeccCCcCCHHHHHHHHHH
Q psy14754        158 ECSAKSKEGVREVFETATR  176 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~  176 (192)
                      ++||++|.|++++|++|.+
T Consensus       149 ~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         149 PSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EeeCCCCCChHHHHHHHhc
Confidence            9999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=4.7e-31  Score=180.81  Aligned_cols=161  Identities=19%  Similarity=0.263  Sum_probs=120.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|+++||||||++++..+.+.. +.|+.+.... .  ++...+.+.+||+||++.+...|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            357899999999999999999998877653 3455443322 2  33456889999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc----CCceEE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI----NAFAYL  157 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  157 (192)
                      |+|+++++++....+.+...+.. ..++.|++|++||+|+....              ..++..+...-.    ..+.++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~l~l~~~~~~~~~~~  156 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHWYIQ  156 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--------------CHHHHHHHhCccccCCCceEEE
Confidence            99999999988876544444433 33579999999999986532              122222211100    113566


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        158 ECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++||++|+|++++|++|.+.+.++
T Consensus       157 ~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        157 STCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             eccCCCCCCHHHHHHHHHHHHhhc
Confidence            899999999999999999887654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=6.5e-31  Score=179.40  Aligned_cols=159  Identities=19%  Similarity=0.259  Sum_probs=118.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++..+.+.. +.|+.+.... ...  ...+.+.+||+||++.+...|..+++++|++|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~-~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE-TVT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE-EEE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            357999999999999999999998777643 4455443322 222  346789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceEE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAYL  157 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  157 (192)
                      |+|++++++++...+.|...+.. ..++.|++||+||.|+.....              ..+..+....    ...+.++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~~~~~  152 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK--------------AAEITEKLGLHSIRDRNWYIQ  152 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC--------------HHHHHHHhCccccCCCcEEEE
Confidence            99999999998887655555543 235799999999999865321              1111111100    0124577


Q ss_pred             EeccCCcCCHHHHHHHHHHHHh
Q psy14754        158 ECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      ++||++|+|++++|++|...+.
T Consensus       153 ~~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      153 PTCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             EeeCCCCCCHHHHHHHHHHHhc
Confidence            8999999999999999987753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=7.5e-30  Score=173.35  Aligned_cols=161  Identities=28%  Similarity=0.552  Sum_probs=131.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||++++..+.+...+.++.+. .....+.+.+..+.+.+||+||+..+...+..+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            3689999999999999999999988776665555443 334456677888899999999999998888889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.+++.+. .|+..+.... .+.|+++++||+|+...            +.+.......+.+... .+++++||
T Consensus        86 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~------------~~i~~~~~~~~~~~~~-~~~~~~Sa  151 (169)
T cd04114          86 TYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER------------REVSQQRAEEFSDAQD-MYYLETSA  151 (169)
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEeeC
Confidence            99999999988874 6877776654 36899999999998652            3344555666766666 58999999


Q ss_pred             CCcCCHHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRAA  178 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~  178 (192)
                      ++|.|++++|++|.+.+
T Consensus       152 ~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         152 KESDNVEKLFLDLACRL  168 (169)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=9e-31  Score=179.61  Aligned_cols=165  Identities=19%  Similarity=0.312  Sum_probs=120.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++..+.+.. +.|+.+.... .  ++...+.+.+||+||++.+...+..+++.+|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            457999999999999999999998877754 3454443322 2  23356889999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|+++++++....+.+...+.. ...+.|++||+||.|+.......+....+...         ..+.. .+.++++||
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~---------~~~~~-~~~~~~~Sa  160 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLH---------SVRQR-NWYIQGCCA  160 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCC---------cccCC-cEEEEeeeC
Confidence            99999999988886555555443 23578999999999986522111111110000         01111 246779999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++|.|++++|++|.+.+.++
T Consensus       161 ~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        161 TTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999998877654

>cd00876 Ras Ras family

Probab=99.97  E-value=3.4e-30  Score=173.40  Aligned_cols=158  Identities=36%  Similarity=0.614  Sum_probs=131.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      ||+++|++|||||||++++++..+...+.++............+..+.+.+||+||+..+...+...++.+|++++|+|+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            79999999999999999999988777777766655555666677788999999999998888888889999999999999


Q ss_pred             CChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         87 DSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      ++++++..+. .|...+....  .+.|+++++||+|+...            +....+.+..+...++ .+++++|++++
T Consensus        81 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~~  146 (160)
T cd00876          81 TDRESFEEIK-GYREQILRVKDDEDIPIVLVGNKCDLENE------------RQVSKEEGKALAKEWG-CPFIETSAKDN  146 (160)
T ss_pred             CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCccccc------------ceecHHHHHHHHHHcC-CcEEEeccCCC
Confidence            9999998886 4444444433  48999999999998762            3455677777877777 59999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy14754        165 EGVREVFETATRAA  178 (192)
Q Consensus       165 ~gi~~~~~~i~~~~  178 (192)
                      .|+++++++|.+.+
T Consensus       147 ~~i~~l~~~l~~~i  160 (160)
T cd00876         147 INIDEVFKLLVREI  160 (160)
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00154 Rab Rab family

Probab=99.97  E-value=4.9e-30  Score=172.16  Aligned_cols=156  Identities=39%  Similarity=0.703  Sum_probs=131.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||++++.+..+...+.++..... ...+..+.....+.+||+||+..+...+...++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998887655555433 455666777899999999999998888899999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      |++++++++.+. .|+..+.... .+.|+++++||+|+..            ......++...+....+ .+++++||++
T Consensus        81 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~  146 (159)
T cd00154          81 DITNRESFENLD-KWLKELKEYAPENIPIILVGNKIDLED------------QRQVSTEEAQQFAKENG-LLFFETSAKT  146 (159)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccccc------------cccccHHHHHHHHHHcC-CeEEEEecCC
Confidence            999998998885 5887777665 5799999999999963            23455677777777765 6999999999


Q ss_pred             cCCHHHHHHHHH
Q psy14754        164 KEGVREVFETAT  175 (192)
Q Consensus       164 ~~gi~~~~~~i~  175 (192)
                      +.|+++++++|.
T Consensus       147 ~~~i~~~~~~i~  158 (159)
T cd00154         147 GENVEELFQSLA  158 (159)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999985

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.3e-30  Score=175.24  Aligned_cols=154  Identities=18%  Similarity=0.316  Sum_probs=114.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|.+++|||||++++..+.+.. +.|+.+... ..+  ....+.+.+||+||++.+...+..+++++|++++|+|
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~-~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            589999999999999999998877763 455544332 222  2346889999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH---HcCCceEEEecc
Q psy14754         86 IDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ---KINAFAYLECSA  161 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa  161 (192)
                      ++++.++....+.|...+.. ...+.|++|++||+|+......             .+....+..   ....+.++++||
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~Sa  143 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA-------------AEVTDKLGLHSLRNRNWYIQATCA  143 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH-------------HHHHHHhCccccCCCCEEEEEeeC
Confidence            99999998886555555443 2346899999999998642111             011111110   011246789999


Q ss_pred             CCcCCHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATR  176 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~  176 (192)
                      ++|+|++++|++|.+
T Consensus       144 k~g~gv~~~~~~l~~  158 (159)
T cd04150         144 TSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCHHHHHHHHhc
Confidence            999999999999863

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=3.8e-30  Score=174.74  Aligned_cols=158  Identities=20%  Similarity=0.344  Sum_probs=119.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      ||+++|+++||||||++++.+..+.. +.++.+.... .  ++...+.+.+||+||+..+...+..+++.+|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999986654 4444433322 2  333567899999999999988898899999999999999


Q ss_pred             CChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-----CceEEEec
Q psy14754         87 DSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-----AFAYLECS  160 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~S  160 (192)
                      ++++++......+...+.. ...+.|++|++||+|+...              ...++...+....+     .+.++++|
T Consensus        77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~S  142 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--------------LSVEEMTELLSLHKLCCGRSWYIQGCD  142 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--------------CCHHHHHHHhCCccccCCCcEEEEeCc
Confidence            9999998886444444433 2346899999999998542              23344444432211     24688999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |++|.|++++|++|.+.+.+..
T Consensus       143 a~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         143 ARSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             CCCCCCHHHHHHHHHHHHhhcc
Confidence            9999999999999998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.4e-29  Score=176.14  Aligned_cols=161  Identities=31%  Similarity=0.486  Sum_probs=128.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      ||+++|++|+|||||++++++..+...+.++........+.+.+..+.+.+||+||+..+...+...++.+|++++|+|+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            79999999999999999999998877666666544455566777778999999999999988888889999999999999


Q ss_pred             CChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH-HcCCceEEEeccCC
Q psy14754         87 DSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ-KINAFAYLECSAKS  163 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~  163 (192)
                      +++.+++.+. .|...+....  .+.|+++|+||+|+...           .+.+......+... .++ .+++++||++
T Consensus        81 ~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----------~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~  147 (198)
T cd04147          81 DDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEE-----------ERQVPAKDALSTVELDWN-CGFVETSAKD  147 (198)
T ss_pred             CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccc-----------cccccHHHHHHHHHhhcC-CcEEEecCCC
Confidence            9999999884 6666555433  37999999999998652           12233333333332 333 5899999999


Q ss_pred             cCCHHHHHHHHHHHHhh
Q psy14754        164 KEGVREVFETATRAALQ  180 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~  180 (192)
                      |.|++++|+++.+.+..
T Consensus       148 g~gv~~l~~~l~~~~~~  164 (198)
T cd04147         148 NENVLEVFKELLRQANL  164 (198)
T ss_pred             CCCHHHHHHHHHHHhhc
Confidence            99999999999988764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0395|consensus

Probab=99.97  E-value=7.1e-30  Score=175.51  Aligned_cols=165  Identities=36%  Similarity=0.523  Sum_probs=149.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+++|.+|+|||+|+.+++...|...+.|+..+.+.+.+.++++...+.++||+|++.|......+++.++++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+++++.||+.+...+....+... ...|+++|+||+|+..            .+.+..+++..++..+++ +|+++||+
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~------------~R~V~~eeg~~la~~~~~-~f~E~Sak  148 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER------------ERQVSEEEGKALARSWGC-AFIETSAK  148 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh------------ccccCHHHHHHHHHhcCC-cEEEeecc
Confidence            999999999999754444433222 4679999999999987            478999999999999996 79999999


Q ss_pred             CcCCHHHHHHHHHHHHhhh
Q psy14754        163 SKEGVREVFETATRAALQV  181 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~  181 (192)
                      .+.+++++|..+.+.+...
T Consensus       149 ~~~~v~~~F~~L~r~~~~~  167 (196)
T KOG0395|consen  149 LNYNVDEVFYELVREIRLP  167 (196)
T ss_pred             CCcCHHHHHHHHHHHHHhh
Confidence            9999999999999988873

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=2e-29  Score=173.19  Aligned_cols=164  Identities=24%  Similarity=0.336  Sum_probs=121.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ..+||+++|++|||||||++++....+... .++.+... ...+.. +...+.+.+|||||++.+...|..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            368999999999999999999998877654 44433222 222222 346789999999999999889999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH--Hc---CCc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ--KI---NAF  154 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~  154 (192)
                      +|+|++++++++... .|+..+....  .+.|+++|+||+|+....              ...+...+..  ..   ..+
T Consensus        81 ~v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~  145 (183)
T cd04152          81 FVVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLPNAL--------------SVSEVEKLLALHELSASTPW  145 (183)
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCccccC--------------CHHHHHHHhCccccCCCCce
Confidence            999999998887774 4554444322  479999999999986421              1222222221  11   124


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +++++||++++|+++++++|.+.+.+.+.
T Consensus       146 ~~~~~SA~~~~gi~~l~~~l~~~l~~~~~  174 (183)
T cd04152         146 HVQPACAIIGEGLQEGLEKLYEMILKRRK  174 (183)
T ss_pred             EEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence            68899999999999999999999876653

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=5e-30  Score=173.26  Aligned_cols=157  Identities=17%  Similarity=0.263  Sum_probs=118.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      .|+++|++|+|||||++++.+..+...+.|+.+...   ..++...+.+.+||+||++.+...+..+++++|++++|+|+
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            389999999999999999999887776666654332   23455678999999999999999999999999999999999


Q ss_pred             CChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC---
Q psy14754         87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS---  163 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---  163 (192)
                      +++.++.... .|+..+....++.|+++|+||.|+...........        ...+..+++..+ ++++++||++   
T Consensus        78 t~~~s~~~~~-~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~--------~~~~~~~~~~~~-~~~~~~Sa~~~~s  147 (164)
T cd04162          78 ADSERLPLAR-QELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHK--------ELELEPIARGRR-WILQGTSLDDDGS  147 (164)
T ss_pred             CCHHHHHHHH-HHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHH--------HhCChhhcCCCc-eEEEEeeecCCCC
Confidence            9998888775 55555544346899999999999866432111000        011223444444 5788888888   


Q ss_pred             ---cCCHHHHHHHHHH
Q psy14754        164 ---KEGVREVFETATR  176 (192)
Q Consensus       164 ---~~gi~~~~~~i~~  176 (192)
                         ++|++++|+.++.
T Consensus       148 ~~~~~~v~~~~~~~~~  163 (164)
T cd04162         148 PSRMEAVKDLLSQLIN  163 (164)
T ss_pred             hhHHHHHHHHHHHHhc
Confidence               9999999998753

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=4.6e-29  Score=170.10  Aligned_cols=157  Identities=18%  Similarity=0.284  Sum_probs=115.5

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...++||+++|++|+|||||++++.+..+. .+.++.+. ....+.++  .+.+.+||+||++.++..+..+++.+|+++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF-QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc-ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            356789999999999999999999987543 33344331 22233333  578999999999988888888999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceE
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAY  156 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  156 (192)
                      +|+|++++.++......+...+.. ...+.|+++|+||+|+.+..              ..++...+...    ...+++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~  152 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--------------SEEEIREALELDKISSHHWRI  152 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--------------CHHHHHHHhCccccCCCceEE
Confidence            999999998888775433333332 23589999999999986521              22223332211    123689


Q ss_pred             EEeccCCcCCHHHHHHHHHH
Q psy14754        157 LECSAKSKEGVREVFETATR  176 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      +++||++|.|++++|+++..
T Consensus       153 ~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         153 QPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             EeccCCCCcCHHHHHHHHhc
Confidence            99999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0081|consensus

Probab=99.96  E-value=9.4e-31  Score=167.18  Aligned_cols=164  Identities=29%  Similarity=0.520  Sum_probs=142.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEE---------CCeEEEEEEEeCCCCCcccccccccC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV---------DSKQVELALWDTAGQEDYDRLRPLSY   74 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~l~D~~g~~~~~~~~~~~~   74 (192)
                      -+|.+.+|++|+||||++.++..++|......+.+..+ .+.+.+         ....+.+++|||+|+++|++++..++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            46889999999999999999999999887766666554 233333         23457899999999999999999999


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhh--hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      +.+=++++++|+++.++|-+.. .|+..++.  ++++-.+++++||+|+..            .+.++..++..++++++
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvr-nWlSQL~~hAYcE~PDivlcGNK~DL~~------------~R~Vs~~qa~~La~kyg  155 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVR-NWLSQLQTHAYCENPDIVLCGNKADLED------------QRVVSEDQAAALADKYG  155 (219)
T ss_pred             HhhccceEEEeccchHHHHHHH-HHHHHHHHhhccCCCCEEEEcCccchhh------------hhhhhHHHHHHHHHHhC
Confidence            9999999999999999999995 89988875  557888999999999987            68899999999999999


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                       +|||++||-+|.|+++..+.+...++++-
T Consensus       156 -lPYfETSA~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  156 -LPYFETSACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             -CCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence             69999999999999999999888888763

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=6.3e-28  Score=169.86  Aligned_cols=164  Identities=30%  Similarity=0.512  Sum_probs=134.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ..++||+++|++|||||||+++++.+.+...+.++.+... ...+..+.+.+.+.+||++|++.+...+..++..+++++
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i   86 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI   86 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence            4689999999999999999999888888777777666544 334455778899999999999999888888889999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|+|+++..++..+. .|...+....++.|+++++||+|+...             ..... ...+.+..+ +.++++||
T Consensus        87 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~-------------~~~~~-~~~~~~~~~-~~~~e~Sa  150 (215)
T PTZ00132         87 IMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDR-------------QVKAR-QITFHRKKN-LQYYDISA  150 (215)
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCccc-------------cCCHH-HHHHHHHcC-CEEEEEeC
Confidence            999999999999885 788887776778999999999998541             12222 234555555 58999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhc
Q psy14754        162 KSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +++.|++++|.+|.+.+....
T Consensus       151 ~~~~~v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        151 KSNYNFEKPFLWLARRLTNDP  171 (215)
T ss_pred             CCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999999887653

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=5e-29  Score=170.03  Aligned_cols=154  Identities=23%  Similarity=0.370  Sum_probs=115.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ..+||+++|++|+|||||++++..+.+.. +.++.+... ....  .....+.+||+||++.+...+..+++.+|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIV--YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEE--ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999887765 344444333 2222  3357899999999999988898899999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH-HHHH----HHcCCceEE
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG-RAMA----QKINAFAYL  157 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~  157 (192)
                      +|+++++++....+.+...+... ..+.|+++++||+|+....              ..++. ..+.    ...+ ++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--------------~~~~i~~~l~~~~~~~~~-~~~~  154 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--------------TPAEISESLGLTSIRDHT-WHIQ  154 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--------------CHHHHHHHhCcccccCCc-eEEE
Confidence            99999988877765555554432 3579999999999986521              11111 1111    1122 5789


Q ss_pred             EeccCCcCCHHHHHHHHHH
Q psy14754        158 ECSAKSKEGVREVFETATR  176 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~  176 (192)
                      ++||++|+|++++|++|.+
T Consensus       155 ~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         155 GCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             ecccCCCCCHHHHHHHHhc
Confidence            9999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0083|consensus

Probab=99.96  E-value=2.1e-30  Score=160.98  Aligned_cols=159  Identities=33%  Similarity=0.599  Sum_probs=138.8

Q ss_pred             EEcCCCCchhHHHHHHhhCCCCCcc-cCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC
Q psy14754         10 IVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID   87 (192)
Q Consensus        10 v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   87 (192)
                      ++|++++|||.|+-++..+.+-... ..+.+..+ .+.+..++..+++++|||+||++|++....+++.+|+.+++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999999888887765443 44445444 455677889999999999999999999999999999999999999


Q ss_pred             ChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCC
Q psy14754         88 SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEG  166 (192)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  166 (192)
                      +..||++. +.|+..+..+.+ .+.+.+++||+|+.+            .+.+..+++..+++.++ +||+++||++|.|
T Consensus        82 nkasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~------------er~v~~ddg~kla~~y~-ipfmetsaktg~n  147 (192)
T KOG0083|consen   82 NKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAH------------ERAVKRDDGEKLAEAYG-IPFMETSAKTGFN  147 (192)
T ss_pred             cchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccch------------hhccccchHHHHHHHHC-CCceecccccccc
Confidence            99999999 589999988763 678899999999987            47788899999999999 5999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q psy14754        167 VREVFETATRAALQVK  182 (192)
Q Consensus       167 i~~~~~~i~~~~~~~~  182 (192)
                      ++..|-.|.+.+...+
T Consensus       148 vd~af~~ia~~l~k~~  163 (192)
T KOG0083|consen  148 VDLAFLAIAEELKKLK  163 (192)
T ss_pred             HhHHHHHHHHHHHHhc
Confidence            9999999999887764

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=5.5e-29  Score=167.95  Aligned_cols=152  Identities=20%  Similarity=0.266  Sum_probs=110.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +|+++|++|+|||||++++.+..+ ...+.++.+....   .+....+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE---SFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE---EEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            689999999999999999998753 4444455442221   123356789999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH---H-HcCCceEE
Q psy14754         86 IDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA---Q-KINAFAYL  157 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~  157 (192)
                      ++++.++.... .|+..+...    ..+.|+++|+||+|+.....              ..+.....   . ....++++
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~l~~~~~~~~~~~~~  142 (162)
T cd04157          78 SSDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDLPDALT--------------AVKITQLLGLENIKDKPWHIF  142 (162)
T ss_pred             CCcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccccCCCC--------------HHHHHHHhCCccccCceEEEE
Confidence            99998887764 444443221    14799999999999865321              11111111   0 01124689


Q ss_pred             EeccCCcCCHHHHHHHHHH
Q psy14754        158 ECSAKSKEGVREVFETATR  176 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~  176 (192)
                      ++||++|.|++++|++|.+
T Consensus       143 ~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         143 ASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             EeeCCCCCchHHHHHHHhc
Confidence            9999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=8.1e-29  Score=166.53  Aligned_cols=151  Identities=21%  Similarity=0.322  Sum_probs=111.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      ||+++|++++|||||++++..+.+... .++.+... ..  ++.....+++||+||++.+...+..+++.+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~-~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT-IPTIGFNV-ET--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc-CCccCcCe-EE--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            799999999999999999988776542 34333222 12  233457899999999999999999999999999999999


Q ss_pred             CChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HHH----HHcCCceEEEec
Q psy14754         87 DSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AMA----QKINAFAYLECS  160 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~S  160 (192)
                      +++.++....+.|...++. ...+.|+++++||+|+.....              ..+.. .+.    ... ..+++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--------------~~~i~~~~~~~~~~~~-~~~~~~~S  141 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--------------EAEISEKLGLSELKDR-TWSIFKTS  141 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--------------HHHHHHHhCccccCCC-cEEEEEee
Confidence            9988777665555555443 235799999999999865321              11111 111    011 14799999


Q ss_pred             cCCcCCHHHHHHHHHH
Q psy14754        161 AKSKEGVREVFETATR  176 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~  176 (192)
                      |+++.|++++|+++.+
T Consensus       142 a~~~~gi~~l~~~l~~  157 (158)
T cd04151         142 AIKGEGLDEGMDWLVN  157 (158)
T ss_pred             ccCCCCHHHHHHHHhc
Confidence            9999999999999865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=2.1e-28  Score=166.81  Aligned_cols=163  Identities=26%  Similarity=0.423  Sum_probs=120.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|+.||||||+++++..+.... ..|+.+.. ...+.+  .+..+.+||++|+..++..|..+++++|++||
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~-~~~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN-IEEIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE-EEEEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc-cceeee--CcEEEEEEeccccccccccceeeccccceeEE
Confidence            568999999999999999999998765433 23333322 222333  45789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|.++.+.+....+.+...+... ..+.|++|++||.|+.+.....+....+....        +.. ...+.++.+||
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~--------l~~-~~~~~v~~~sa  158 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEK--------LKN-KRPWSVFSCSA  158 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGG--------TTS-SSCEEEEEEBT
T ss_pred             EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhh--------ccc-CCceEEEeeec
Confidence            999999988888876666666542 35899999999999876433222111111110        001 12367899999


Q ss_pred             CCcCCHHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRAA  178 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~  178 (192)
                      .+|+|+.+.++||.+.+
T Consensus       159 ~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  159 KTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTTBTHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcC
Confidence            99999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=2e-28  Score=169.38  Aligned_cols=158  Identities=23%  Similarity=0.395  Sum_probs=115.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+.||+++|++|||||||++++.+..+.. +.++.... ...+.+.  +..+.+||+||+..+...|..+++.+|++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~-~~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPT-SEELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            357899999999999999999999877643 33433322 2233333  4688999999999888888888999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH-----------
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK-----------  150 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (192)
                      |+|+++.+++......+...+... ..+.|+++++||+|+....              ...+.+.....           
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~  158 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV--------------SEEELRQALGLYGTTTGKGVSL  158 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc--------------CHHHHHHHhCcccccccccccc
Confidence            999999888877654444444322 2479999999999986422              22222222211           


Q ss_pred             ---c-CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        151 ---I-NAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       151 ---~-~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                         . ..++++++||++++|++++|++|.+.+
T Consensus       159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence               1 124789999999999999999997653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=2.3e-28  Score=165.64  Aligned_cols=157  Identities=17%  Similarity=0.268  Sum_probs=115.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      +|+++|++|||||||++++.+. +...+.++.+.. ...+  ......+.+||+||+..+...|..+++++|++++|+|+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKL--RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEE--EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            5899999999999999999977 555555555433 2223  33567899999999999999999999999999999999


Q ss_pred             CChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-CceEEEeccCC
Q psy14754         87 DSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-AFAYLECSAKS  163 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~  163 (192)
                      ++..++.... .|+..+...  ..+.|+++|+||.|+.......+....+.        ...+++..+ .++++++||++
T Consensus        77 s~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~--------l~~~~~~~~~~~~~~~~Sa~~  147 (167)
T cd04161          77 SDDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLS--------LEKLVNENKSLCHIEPCSAIE  147 (167)
T ss_pred             CchhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcC--------cccccCCCCceEEEEEeEcee
Confidence            9998888885 455544332  24799999999999976543222222111        112222222 25788899999


Q ss_pred             c------CCHHHHHHHHHH
Q psy14754        164 K------EGVREVFETATR  176 (192)
Q Consensus       164 ~------~gi~~~~~~i~~  176 (192)
                      |      .|+++.|+||..
T Consensus       148 g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         148 GLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCCCccccCHHHHHHHHhc
Confidence            8      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=3.8e-28  Score=166.98  Aligned_cols=168  Identities=16%  Similarity=0.265  Sum_probs=115.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+++|+++|++|||||||++++.+..+... .++.... ...+..  .++.+.+||+||+..+...+..+++++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~t~~~~-~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QPTQHPT-SEELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc-CCccccc-eEEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4579999999999999999999998766432 2332221 122222  35789999999999988889999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|+++++++......+...+.. ...+.|+++|+||+|+.......+....+........   .-....+...++++||
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~---~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGS---KGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccc---ccccCCceeEEEEeec
Confidence            99999998887775444444432 2357999999999998643222211111111100000   0000112356899999


Q ss_pred             CCcCCHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRA  177 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~  177 (192)
                      ++++|++++++||..+
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=6.3e-28  Score=163.57  Aligned_cols=153  Identities=26%  Similarity=0.326  Sum_probs=109.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC------CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP------EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI   80 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   80 (192)
                      +|+++|++|+|||||++++.+....      ..+.++..... ..+.+  .+..+.+||+||++.+...+...++.+|++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEV--GNARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            6899999999999999999864332      12222222222 22233  357899999999999988888899999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH------cCC
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK------INA  153 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  153 (192)
                      ++|+|+++++++......+...++.. ..+.|+++++||+|+....              ...+...+...      ...
T Consensus        78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~  143 (167)
T cd04160          78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL--------------SVEEIKEVFQDKAEEIGRRD  143 (167)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC--------------CHHHHHHHhccccccccCCc
Confidence            99999999888877754344444322 2479999999999985531              11222222111      122


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHH
Q psy14754        154 FAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      ++++++||++|+|+++++++|.+
T Consensus       144 ~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         144 CLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             eEEEEeeCCCCcCHHHHHHHHhc
Confidence            58999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=7.8e-28  Score=162.03  Aligned_cols=158  Identities=23%  Similarity=0.388  Sum_probs=111.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      +|+++|++|+|||||++++.+..+... .++.... ...+.. .....+.+||+||+..+...+...++.+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN-VEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc-eEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999887543 3333322 222222 3457899999999999888888889999999999999


Q ss_pred             CChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754         87 DSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      +++.++......+...+.. ...+.|+++|+||+|+.......+....+.        ...+.... ..+++++||++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--------~~~~~~~~-~~~~~~~Sa~~~~  148 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK--------LKKYCSDR-DWYVQPCSAVTGE  148 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC--------CcccCCCC-cEEEEecccccCC
Confidence            9998888875444444443 225899999999999854211100000000        00111111 2478999999999


Q ss_pred             CHHHHHHHHHH
Q psy14754        166 GVREVFETATR  176 (192)
Q Consensus       166 gi~~~~~~i~~  176 (192)
                      |++++|++|.+
T Consensus       149 gv~~~~~~i~~  159 (160)
T cd04156         149 GLAEAFRKLAS  159 (160)
T ss_pred             ChHHHHHHHhc
Confidence            99999999854

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0097|consensus

Probab=99.96  E-value=7.4e-28  Score=151.27  Aligned_cols=164  Identities=30%  Similarity=0.540  Sum_probs=143.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+|-+++|+-|+|||.|+.++...++-.....+.+-.+ .+.++..+..+++++|||.|+++|+.....+++.+.+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            457899999999999999999999888766655655444 6777889999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||++.+..+.++. .|+...+... |+..+++++||.|+..            ++.+..+++.+|+++.+ ..|+++||
T Consensus        90 vyditrrstynhls-swl~dar~ltnpnt~i~lignkadle~------------qrdv~yeeak~faeeng-l~fle~sa  155 (215)
T KOG0097|consen   90 VYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLES------------QRDVTYEEAKEFAEENG-LMFLEASA  155 (215)
T ss_pred             EEEehhhhhhhhHH-HHHhhhhccCCCceEEEEecchhhhhh------------cccCcHHHHHHHHhhcC-eEEEEecc
Confidence            99999998888884 7888776643 6888999999999977            68899999999999998 58999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++|.++++.|-...++++..
T Consensus       156 ktg~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  156 KTGQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             cccCcHHHHHHHHHHHHHHh
Confidence            99999999887777666543

>KOG0073|consensus

Probab=99.95  E-value=1.4e-27  Score=153.32  Aligned_cols=166  Identities=16%  Similarity=0.238  Sum_probs=125.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      .++++|+++|..||||||++++|.+.... ...|+.+-.. +  ......+++.+||++|+...++.|.+++..+|++|+
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf~I-k--tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGFQI-K--TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccceee-E--EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            46999999999999999999999988733 3244433322 2  234567899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|.+|+..+++-...+-..+.. ...+.|++|++||.|+.++....+...        .....+++.... ++++.||+
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~--------~~~L~~l~ks~~-~~l~~cs~  160 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISK--------ALDLEELAKSHH-WRLVKCSA  160 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHH--------hhCHHHhccccC-ceEEEEec
Confidence            99999998887776555444442 335799999999999986432111110        112223333344 79999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .+|+++.+-++|+...+.++
T Consensus       161 ~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  161 VTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             cccccHHHHHHHHHHHHHHH
Confidence            99999999999999988873

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.4e-27  Score=160.50  Aligned_cols=152  Identities=22%  Similarity=0.341  Sum_probs=112.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      ||+++|++|+|||||++++.+..+.. +.++..... ..+  ......+.+||+||+..+...+..+++.+|++++|+|+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~-~~~t~~~~~-~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVT-TIPTIGFNV-ETV--EYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCcCcce-EEE--EECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            79999999999999999999987433 233333222 222  23357899999999999998999999999999999999


Q ss_pred             CChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----HcCCceEEEecc
Q psy14754         87 DSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KINAFAYLECSA  161 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa  161 (192)
                      ++++++......+....... ..+.|+++++||+|+.....              ..+......    ....++++++||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~Sa  142 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS--------------VSELIEKLGLEKILGRRWHIQPCSA  142 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC--------------HHHHHHhhChhhccCCcEEEEEeeC
Confidence            99988888864444444432 35899999999999876321              111222111    112358999999


Q ss_pred             CCcCCHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATR  176 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~  176 (192)
                      ++|.|++++|++|..
T Consensus       143 ~~~~gv~~~~~~l~~  157 (158)
T cd00878         143 VTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCCHHHHHHHHhh
Confidence            999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0075|consensus

Probab=99.95  E-value=4.4e-28  Score=152.87  Aligned_cols=164  Identities=23%  Similarity=0.342  Sum_probs=137.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++.+.++|..+||||||+|....+.+.+.-.|+.+-+..   .+..+.+.+.+||.||+..|++.|..+++.++++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            4788999999999999999999998887776777665543   4567789999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      +|+.+++.++...+.+..++.+.. .++|++|++||.|+.++.......+.+....+++.+          +.+|.+|++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE----------vcC~siSck  165 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE----------VCCFSISCK  165 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce----------EEEEEEEEc
Confidence            999999999988877777776543 589999999999998876665555555554444333          578999999


Q ss_pred             CcCCHHHHHHHHHHHHhh
Q psy14754        163 SKEGVREVFETATRAALQ  180 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~  180 (192)
                      +..||+.+.+|+.++.-.
T Consensus       166 e~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  166 EKVNIDITLDWLIEHSKS  183 (186)
T ss_pred             CCccHHHHHHHHHHHhhh
Confidence            999999999999987643

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=1.1e-26  Score=160.89  Aligned_cols=150  Identities=21%  Similarity=0.331  Sum_probs=115.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-----CeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-----SKQVELALWDTAGQEDYDRLRPLSYPDTDV   79 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~   79 (192)
                      +||+++|++++|||||++++.++.+...+.++.+... .+.+.+.     +..+.+.+||++|++.|...+..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999888777766433 3334442     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhhhchhhhhHHHHhhh--------------------CCCCcEEEEeecccccCCccchhhhhhccCCCC
Q psy14754         80 ILMCFSIDSPDSLENIPEKWTPEVKHF--------------------CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPV  139 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  139 (192)
                      +|+|||++++.+++++. .|+..+...                    .++.|++||+||.|+.+....        ....
T Consensus        81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~--------~~~~  151 (202)
T cd04102          81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES--------SGNL  151 (202)
T ss_pred             EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc--------chHH
Confidence            99999999999999995 888877542                    136899999999999763210        0111


Q ss_pred             CHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754        140 KPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      .......++++.+. +.++.++.+..
T Consensus       152 ~~~~~~~ia~~~~~-~~i~~~c~~~~  176 (202)
T cd04102         152 VLTARGFVAEQGNA-EEINLNCTNGR  176 (202)
T ss_pred             HhhHhhhHHHhcCC-ceEEEecCCcc
Confidence            12234456777884 77777776553

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=1.7e-26  Score=156.67  Aligned_cols=156  Identities=23%  Similarity=0.172  Sum_probs=105.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc---------ccCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP---------LSYPD   76 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~---------~~~~~   76 (192)
                      .+|+++|++|+|||||+++|.+..+.....+..+... ........+..+.+|||||+........         .....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSL-FVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccce-eEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            3799999999999999999999876433222221111 1112333567899999999743211100         01123


Q ss_pred             CCEEEEEEECCChhhh--hchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754         77 TDVILMCFSIDSPDSL--ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF  154 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (192)
                      +|++++|+|+++..++  ... ..|...+....++.|+++|+||+|+.....            ..  +..++.... ..
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~------------~~--~~~~~~~~~-~~  143 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED------------LS--EIEEEEELE-GE  143 (168)
T ss_pred             cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh------------HH--HHHHhhhhc-cC
Confidence            6899999999987543  333 356666666556899999999999965321            11  123343333 36


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        155 AYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      +++++||++|.|++++++++.+.+
T Consensus       144 ~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         144 EVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ceEEEEecccCCHHHHHHHHHHHh
Confidence            899999999999999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=3.4e-26  Score=165.75  Aligned_cols=143  Identities=22%  Similarity=0.377  Sum_probs=115.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-------------CeEEEEEEEeCCCCCcccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-------------SKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~l~D~~g~~~~~~   68 (192)
                      ...+||+++|+.|+|||||+++|.++.+...+.++.+..+ .+.+.++             ...+.+.||||+|++.|..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            4679999999999999999999999998887777776544 3444443             2468899999999999999


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-------------CCCcEEEEeecccccCCccchhhhhhcc
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-------------PNVPIILVGNKKDLRNDPNTIKELNKMK  135 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~  135 (192)
                      ++..++++++++|+|||+++..+++.+. .|+..+....             .+.|++||+||+|+.....         
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~---------  168 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG---------  168 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc---------
Confidence            9999999999999999999999999994 7888887642             2589999999999965211         


Q ss_pred             CCC---CCHHHHHHHHHHcCCce
Q psy14754        136 QEP---VKPEEGRAMAQKINAFA  155 (192)
Q Consensus       136 ~~~---~~~~~~~~~~~~~~~~~  155 (192)
                      .+.   ...++++++++..+..+
T Consensus       169 ~r~~s~~~~e~a~~~A~~~g~l~  191 (334)
T PLN00023        169 TRGSSGNLVDAARQWVEKQGLLP  191 (334)
T ss_pred             ccccccccHHHHHHHHHHcCCCc
Confidence            012   35788889998876543

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=6.6e-27  Score=156.97  Aligned_cols=157  Identities=22%  Similarity=0.329  Sum_probs=113.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      .|+++|++|||||||++++.+..+...+.++.+.... .+..  ..+.+.+||+||+..+...+..+++.+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            3899999999999999999999888777666554433 2222  347899999999999998888999999999999999


Q ss_pred             CChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754         87 DSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      ++..++......+....... ..+.|+++|+||+|+................         .... ..++++++|++++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~Sa~~~~  147 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLK---------SITD-REVSCYSISCKEKT  147 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcc---------cccC-CceEEEEEEeccCC
Confidence            99888777654444443321 2478999999999986532111111100000         0011 12578999999999


Q ss_pred             CHHHHHHHHHH
Q psy14754        166 GVREVFETATR  176 (192)
Q Consensus       166 gi~~~~~~i~~  176 (192)
                      |+++++++|.+
T Consensus       148 gi~~l~~~l~~  158 (159)
T cd04159         148 NIDIVLDWLIK  158 (159)
T ss_pred             ChHHHHHHHhh
Confidence            99999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=3.5e-26  Score=155.42  Aligned_cols=156  Identities=20%  Similarity=0.200  Sum_probs=104.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcc----ccccccc---CCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDY----DRLRPLS---YPDTD   78 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~~~---~~~~~   78 (192)
                      +|+++|++|||||||+++|.+........+..+... ...+... ....+.+|||||+...    ......+   ++.+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999997654222112221111 1111222 2247999999996421    1222222   34699


Q ss_pred             EEEEEEECCCh-hhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754         79 VILMCFSIDSP-DSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF  154 (192)
Q Consensus        79 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (192)
                      ++++|+|++++ ++++.+ ..|.+.+....   .+.|+++|+||+|+.....             .......+.......
T Consensus        81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~  146 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-------------LFELLKELLKELWGK  146 (170)
T ss_pred             EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-------------hHHHHHHHHhhCCCC
Confidence            99999999998 677776 46777666543   3789999999999865321             123333444443235


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHH
Q psy14754        155 AYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      +++++||+++.|++++|+++.+.
T Consensus       147 ~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         147 PVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CEEEEecCCCCCHHHHHHHHHhh
Confidence            89999999999999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0070|consensus

Probab=99.94  E-value=1.2e-26  Score=152.70  Aligned_cols=165  Identities=21%  Similarity=0.311  Sum_probs=130.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+.+|+++|.-+|||||++.+|..+....+ .|+.+-+..   .+...++.+++||.+|++.++..|..++++.+++||
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf   90 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF   90 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence            4689999999999999999999998887766 666655433   234458899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|.+|++.+....+.+...+.... .+.|+++.+||.|+..+-+..+.-..+....+        ..  ..+.+..++|
T Consensus        91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l--------~~--~~w~iq~~~a  160 (181)
T KOG0070|consen   91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSL--------RS--RNWHIQSTCA  160 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhcc--------CC--CCcEEeeccc
Confidence            9999999999999877777776543 68999999999999876443222221111111        11  2256788999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .+|+|+.+.++|+...+..+
T Consensus       161 ~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  161 ISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             cccccHHHHHHHHHHHHhcc
Confidence            99999999999999887654

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=3.7e-26  Score=155.77  Aligned_cols=160  Identities=20%  Similarity=0.352  Sum_probs=111.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+++|+++|++|||||||++++.+..+.. ..++.+.. ...+...  +..+.+||+||+..+...+..+++.+|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~-~~~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN-IKTVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            357999999999999999999999876543 23333211 1222333  4678999999998888888888899999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|+++..++......+...+... ..+.|+++++||+|+............+...        .+  ....++++++||
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~--------~~--~~~~~~~~~~Sa  157 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLH--------DL--RDRTWHIQACSA  157 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCc--------cc--CCCeEEEEEeEC
Confidence            999999888877654444444332 2479999999999986532111111100000        00  001135789999


Q ss_pred             CCcCCHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATR  176 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~  176 (192)
                      ++|+|++++|+||.+
T Consensus       158 ~~~~gi~~~~~~l~~  172 (173)
T cd04155         158 KTGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCCHHHHHHHHhc
Confidence            999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=5.1e-26  Score=168.24  Aligned_cols=162  Identities=19%  Similarity=0.181  Sum_probs=112.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCccc-------ccccccCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYD-------RLRPLSYPDT   77 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~   77 (192)
                      -.|+++|.||||||||+++|.+........+.++..... .+.+. ....+.+||+||...-.       ..+...++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            358999999999999999999876543333333333222 22222 34578999999964311       1222345679


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF  154 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (192)
                      +++++|+|+++.++++.+ +.|...+..+.   .+.|+++|+||+|+....            .........+....+ .
T Consensus       238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------------~~~~~~~~~~~~~~~-~  303 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEE------------EEREKRAALELAALG-G  303 (335)
T ss_pred             CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCch------------hHHHHHHHHHHHhcC-C
Confidence            999999999987777776 47877776654   378999999999986531            111222333344444 5


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +++++||++++|+++++++|.+.+.+.+
T Consensus       304 ~i~~iSAktg~GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        304 PVFLISAVTGEGLDELLRALWELLEEAR  331 (335)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence            8999999999999999999998876543

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=5.5e-26  Score=155.74  Aligned_cols=154  Identities=18%  Similarity=0.192  Sum_probs=107.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC--C-----CCcccCce-------eeeeeE--EEEE---CCeEEEEEEEeCCCCCccc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ--F-----PEVYVPTV-------FENYVA--DIEV---DSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~--~-----~~~~~~~~-------~~~~~~--~~~~---~~~~~~~~l~D~~g~~~~~   67 (192)
                      +|+++|++++|||||+++|++..  +     ...+.++.       .+....  ...+   +...+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998742  1     11111110       111111  1222   5567889999999999998


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM  147 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (192)
                      ..+...++.+|++|+|+|++++.+.+.. ..|.....   .+.|+++|+||+|+....              ......++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~--------------~~~~~~~~  143 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD--------------PERVKQQI  143 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC--------------HHHHHHHH
Confidence            8888889999999999999987555544 23433322   378999999999985421              11122344


Q ss_pred             HHHcCC--ceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        148 AQKINA--FAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       148 ~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ++.++.  .+++++||++|+|++++++++.+.+
T Consensus       144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            444442  2489999999999999999998775

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=1.9e-25  Score=149.64  Aligned_cols=157  Identities=38%  Similarity=0.511  Sum_probs=119.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ++||+++|++|+|||||++++.+..+...+.++.+..... .+......+.+.+||+||+..+...+....+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            4799999999999999999999988666655555544433 345566568899999999999888888888889999999


Q ss_pred             EECCCh-hhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         84 FSIDSP-DSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        84 ~d~~~~-~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|.... .++......|...+..... +.|+++++||.|+....             . ...........+..+++++||
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~~~~~~~sa  146 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-------------L-KTHVAFLFAKLNGEPIIPLSA  146 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-------------h-hHHHHHHHhhccCCceEEeec
Confidence            999876 5666554456555555544 89999999999996631             1 222233333444468999999


Q ss_pred             CCcCCHHHHHHHHH
Q psy14754        162 KSKEGVREVFETAT  175 (192)
Q Consensus       162 ~~~~gi~~~~~~i~  175 (192)
                      .++.|+++++++|.
T Consensus       147 ~~~~gv~~~~~~l~  160 (161)
T TIGR00231       147 ETGKNIDSAFKIVE  160 (161)
T ss_pred             CCCCCHHHHHHHhh
Confidence            99999999999864

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.94  E-value=6.3e-26  Score=149.85  Aligned_cols=135  Identities=23%  Similarity=0.307  Sum_probs=97.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCC-----cccccccccCCCCCEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE-----DYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~~~~i   81 (192)
                      ||+++|++|+|||||+++|.+..+..  .++.      .+.+.     -.+|||||+.     .+..... .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~~--~~t~------~~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEILY--KKTQ------AVEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcccc--ccce------eEEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            89999999999999999999876532  1221      11222     1689999972     2333323 478999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|+|++++.++...  .|....     ..|+++|+||+|+.+.             ....++..++++..+..+++++||
T Consensus        68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa  127 (142)
T TIGR02528        68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-------------DVDIERAKELLETAGAEPIFEISS  127 (142)
T ss_pred             EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-------------ccCHHHHHHHHHHcCCCcEEEEec
Confidence            99999999877552  454432     3499999999998641             223445566666666458999999


Q ss_pred             CCcCCHHHHHHHHH
Q psy14754        162 KSKEGVREVFETAT  175 (192)
Q Consensus       162 ~~~~gi~~~~~~i~  175 (192)
                      +++.|++++|+++.
T Consensus       128 ~~~~gi~~l~~~l~  141 (142)
T TIGR02528       128 VDEQGLEALVDYLN  141 (142)
T ss_pred             CCCCCHHHHHHHHh
Confidence            99999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=6.9e-25  Score=149.26  Aligned_cols=142  Identities=32%  Similarity=0.491  Sum_probs=118.0

Q ss_pred             CCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhh
Q psy14754         28 DQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF  106 (192)
Q Consensus        28 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  106 (192)
                      +.|.+.+.++.+..+ .+.+.++++.+.+.+|||||++.+...+..+++++|++|+|||++++++++.+. .|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHh
Confidence            346667777776554 556778889999999999999999999999999999999999999999999995 677766543


Q ss_pred             -CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        107 -CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       107 -~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                       .++.|++||+||+|+..            .+.+...++..++..++ ..++++||++|.|++++|++|.+.+.+...
T Consensus        82 ~~~~~piilVgNK~DL~~------------~~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~  146 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGD------------LRKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDN  146 (176)
T ss_pred             cCCCCeEEEEEECccccc------------ccCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence             35789999999999965            24466777778888777 489999999999999999999999876543

>TIGR00436 era GTP-binding protein Era

Probab=99.94  E-value=9.8e-26  Score=163.53  Aligned_cols=157  Identities=15%  Similarity=0.099  Sum_probs=107.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCccc-CceeeeeeEEEEECCeEEEEEEEeCCCCCcccc--------cccccCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYV-PTVFENYVADIEVDSKQVELALWDTAGQEDYDR--------LRPLSYPDT   77 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~   77 (192)
                      +|+++|++|+|||||+|+|++......+. +.++......+... .+..+.+|||||......        .....++.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            68999999999999999999987654332 22222222333222 335699999999754321        123456789


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL  157 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
                      |++++|+|+++..+..   +.+...+...  +.|+++|+||+|+.....             .......+....+..+++
T Consensus        81 Dvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~v~  142 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-------------LLPLIDKYAILEDFKDIV  142 (270)
T ss_pred             CEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH-------------HHHHHHHHHhhcCCCceE
Confidence            9999999999865443   3455555543  789999999999864211             112233344434433789


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        158 ECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ++||++|.|++++++++.+.+....
T Consensus       143 ~iSA~~g~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       143 PISALTGDNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999998876543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=6.5e-25  Score=155.05  Aligned_cols=179  Identities=36%  Similarity=0.528  Sum_probs=138.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|+.|+|||||+++|.+..+...+.++.+..+.. ........+.+.+|||+|+++++..+..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34899999999999999999999999999888887655543 33334447889999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc--CCceEEEe
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI--NAFAYLEC  159 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  159 (192)
                      ++|..+..++....+.|...+....+ +.|+++++||+|+...............+..............  ....++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            99999977788888899999888774 7999999999999886544333222111222222222222222  12348999


Q ss_pred             ccC--CcCCHHHHHHHHHHHHhhhc
Q psy14754        160 SAK--SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       160 Sa~--~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |++  ++.++.++|..+...+....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhh
Confidence            999  99999999999999987543

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.6e-25  Score=151.28  Aligned_cols=154  Identities=19%  Similarity=0.202  Sum_probs=99.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC---CCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ---FPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +.|+++|++|+|||||+++|.+..   +.....++.+... .....+.. +..+.+|||||++.+.......++.+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999998643   2222122222111 12223321 468999999999888766666788999999


Q ss_pred             EEEECCCh---hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc--CCceE
Q psy14754         82 MCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI--NAFAY  156 (192)
Q Consensus        82 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  156 (192)
                      +|+|+++.   ++.+.+     ..+... ...|+++++||+|+......          .....+..+.....  ...++
T Consensus        80 ~V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  143 (164)
T cd04171          80 LVVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDWL----------ELVEEEIRELLAGTFLADAPI  143 (164)
T ss_pred             EEEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHHH----------HHHHHHHHHHHHhcCcCCCcE
Confidence            99999873   222221     222221 13499999999998652110          00112222222221  23689


Q ss_pred             EEeccCCcCCHHHHHHHHHH
Q psy14754        157 LECSAKSKEGVREVFETATR  176 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      +++||++++|++++++.+.+
T Consensus       144 ~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         144 FPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEEeCCCCcCHHHHHHHHhh
Confidence            99999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=1.1e-24  Score=162.09  Aligned_cols=158  Identities=20%  Similarity=0.215  Sum_probs=107.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee--eeeEEEEECCeEEEEEEEeCCCCCc-cccccc-------cc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE--NYVADIEVDSKQVELALWDTAGQED-YDRLRP-------LS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~-------~~   73 (192)
                      ..++|+++|++|+|||||+|+|.+..+........++  .....+..  .+..+.+|||||... +.....       ..
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~--~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL--KDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe--CCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            3569999999999999999999998775422211111  11222233  345789999999743 222211       23


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc-C
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI-N  152 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (192)
                      ++.+|++++|+|..+  ++......|+..+...  +.|.++|+||+|+...               ...+..++.... .
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~---------------~~~~~~~~l~~~~~  189 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK---------------YLNDIKAFLTENHP  189 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc---------------cHHHHHHHHHhcCC
Confidence            678999999999765  3555545566666544  5788999999998531               122333333333 2


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ..+++++||++|.|+++++++|...+.+..
T Consensus       190 ~~~i~~iSAktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        190 DSLLFPISALSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             CcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence            357999999999999999999998877653

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=1.7e-24  Score=146.83  Aligned_cols=158  Identities=22%  Similarity=0.256  Sum_probs=107.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      .|+++|++|+|||||+++|....+.....++.+... ...+... .....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999999887665433333222 1222222 14678999999999888888887888999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----Hc-CCceEEEe
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KI-NAFAYLEC  159 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~  159 (192)
                      |+++....+..  ..+..+..  .+.|+++|+||+|+......  ..         ......+..    .+ ..++++++
T Consensus        82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~  146 (168)
T cd01887          82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANPE--RV---------KNELSELGLQGEDEWGGDVQIVPT  146 (168)
T ss_pred             ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccHH--HH---------HHHHHHhhccccccccCcCcEEEe
Confidence            99875322111  12223333  37899999999998643210  00         000111110    11 22589999


Q ss_pred             ccCCcCCHHHHHHHHHHHHh
Q psy14754        160 SAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      |+++++|+++++++|.+...
T Consensus       147 Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         147 SAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ecccCCCHHHHHHHHHHhhh
Confidence            99999999999999988754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=4.2e-25  Score=154.05  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=101.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC-----------Ccccccccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ-----------EDYDRLRPL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~~~~~~~~   72 (192)
                      ..++|+++|++|+|||||+++|.+..+.....++.+. ....+...    .+.+|||||.           +.++..+..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR-KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee-CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            4689999999999999999999988765544443322 22222222    5899999993           344443333


Q ss_pred             cC----CCCCEEEEEEECCChhhhhc---------hhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCC
Q psy14754         73 SY----PDTDVILMCFSIDSPDSLEN---------IPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPV  139 (192)
Q Consensus        73 ~~----~~~~~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  139 (192)
                      ++    ..++++++|+|..+...+..         ....+...+..  .+.|+++|+||+|+....              
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~--------------  146 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR--------------  146 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH--------------
Confidence            33    34678888888765322210         00112333333  379999999999986521              


Q ss_pred             CHHHHHHHHHHcCC--------ceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        140 KPEEGRAMAQKINA--------FAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       140 ~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                       .+...++.+.++.        .+++++||++| |+++++++|.+.+...++
T Consensus       147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        147 -DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             -HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence             2233344444432        25899999999 999999999998765443

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=1.2e-24  Score=152.11  Aligned_cols=153  Identities=23%  Similarity=0.229  Sum_probs=104.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc---------cccccccC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY---------DRLRPLSY   74 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~   74 (192)
                      .++|+++|++|||||||++++++..+.....+..+ ......+.+.+ ...+.+|||||....         ...+ ..+
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~  118 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL-EEV  118 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence            47999999999999999999999864332222211 22222333333 237999999997332         1111 125


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ..+|++++|+|++++.+.... ..|...+.... .+.|+++|+||+|+.+....               .  ...... .
T Consensus       119 ~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~---------------~--~~~~~~-~  179 (204)
T cd01878         119 AEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEEL---------------E--ERLEAG-R  179 (204)
T ss_pred             hcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHHH---------------H--HHhhcC-C
Confidence            689999999999988766665 35556555432 36899999999998663210               0  222222 3


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      .+++++||+++.|+++++++|.+++
T Consensus       180 ~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         180 PDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHhhC
Confidence            5899999999999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=4.6e-24  Score=141.85  Aligned_cols=154  Identities=40%  Similarity=0.604  Sum_probs=113.8

Q ss_pred             EEcCCCCchhHHHHHHhhCCC-CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCC
Q psy14754         10 IVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS   88 (192)
Q Consensus        10 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   88 (192)
                      ++|++|+|||||++++.+... .....++.................+.+||+||+..+...+...++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999999877 4444444433334455556678899999999998887777778899999999999999


Q ss_pred             hhhhhchhhhh-HHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCH
Q psy14754         89 PDSLENIPEKW-TPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGV  167 (192)
Q Consensus        89 ~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (192)
                      +.+.......+ .........+.|+++++||+|+......            ...............+++++|+.++.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~~s~~~~~~i  148 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV------------SEEELAEQLAKELGVPYFETSAKTGENV  148 (157)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch------------HHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence            98887775331 2333334458999999999998764221            1111122223333479999999999999


Q ss_pred             HHHHHHHH
Q psy14754        168 REVFETAT  175 (192)
Q Consensus       168 ~~~~~~i~  175 (192)
                      ++++++|.
T Consensus       149 ~~~~~~l~  156 (157)
T cd00882         149 EELFEELA  156 (157)
T ss_pred             HHHHHHHh
Confidence            99999975

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=2.8e-24  Score=158.95  Aligned_cols=157  Identities=22%  Similarity=0.218  Sum_probs=107.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-EEEEECCeEEEEEEEeCCCCCcccc----ccc---ccCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSKQVELALWDTAGQEDYDR----LRP---LSYPDT   77 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~~~----~~~---~~~~~~   77 (192)
                      -.|+++|.+|||||||++++.+........+.++.... -.+.+. ....+.+||+||.....+    ...   ..++.+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            46899999999999999999987644332333322222 122232 236789999999743221    222   234569


Q ss_pred             CEEEEEEECCCh---hhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754         78 DVILMCFSIDSP---DSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI  151 (192)
Q Consensus        78 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (192)
                      +++++|+|+++.   +.++.+ +.|...+..+.   .+.|++||+||+|+.....             ..+..+.+.+.+
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-------------~~~~~~~l~~~~  302 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-------------LAELLKELKKAL  302 (329)
T ss_pred             CEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-------------HHHHHHHHHHHc
Confidence            999999999976   455555 35666665443   4789999999999865311             123334455555


Q ss_pred             CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        152 NAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      + .+++++||++++|++++++++.+.+
T Consensus       303 ~-~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       303 G-KPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             C-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence            5 5899999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04163 Era Era subfamily

Probab=99.92  E-value=5.7e-24  Score=143.79  Aligned_cols=159  Identities=20%  Similarity=0.147  Sum_probs=106.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc--------ccccCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL--------RPLSYP   75 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~   75 (192)
                      ...+|+++|++|+|||||++++.+...........................+.+|||||.......        ....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            357899999999999999999998765332222222222222223344568999999997543322        223467


Q ss_pred             CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      .+|++++|+|++++  +......+...+...  +.|+++++||+|+.....            ...+....+....+..+
T Consensus        82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~  145 (168)
T cd04163          82 DVDLVLFVVDASEP--IGEGDEFILELLKKS--KTPVILVLNKIDLVKDKE------------DLLPLLEKLKELGPFAE  145 (168)
T ss_pred             hCCEEEEEEECCCc--cCchHHHHHHHHHHh--CCCEEEEEEchhccccHH------------HHHHHHHHHHhccCCCc
Confidence            89999999999987  233333444555443  689999999999874211            11222334444444468


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHH
Q psy14754        156 YLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ++++|++++.|++++++.|.+.+
T Consensus       146 ~~~~s~~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         146 IFPISALKGENVDELLEEIVKYL  168 (168)
T ss_pred             eEEEEeccCCChHHHHHHHHhhC
Confidence            99999999999999999997653

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=1e-24  Score=169.15  Aligned_cols=163  Identities=18%  Similarity=0.150  Sum_probs=107.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc----------cccc-
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY----------DRLR-   70 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~-   70 (192)
                      ..++|+++|.+|+|||||+++|++..... ...++++ +.....+..++  ..+.+|||||....          .... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHH
Confidence            46899999999999999999999886532 2222322 22233344444  45689999995321          1111 


Q ss_pred             cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      ...++.+|++++|+|++++.+.+..  .++..+..  .+.|+++|+||+|+......          .....+.......
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~~----------~~~~~~i~~~l~~  353 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDRR----------YYLEREIDRELAQ  353 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhHH----------HHHHHHHHHhccc
Confidence            2346789999999999998766665  34444443  37999999999999652110          0001111111112


Q ss_pred             cCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        151 INAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ....+++++||++|.|++++|+.+.+.+....
T Consensus       354 ~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        354 VPWAPRVNISAKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            22358999999999999999999988776543

>cd01894 EngA1 EngA1 subfamily

Probab=99.92  E-value=2.6e-24  Score=144.24  Aligned_cols=147  Identities=21%  Similarity=0.200  Sum_probs=99.3

Q ss_pred             EEEcCCCCchhHHHHHHhhCCCC--CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc--------cccccCCCCC
Q psy14754          9 VIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR--------LRPLSYPDTD   78 (192)
Q Consensus         9 ~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~~   78 (192)
                      +++|.+|+|||||+++|.+....  ....+++..........  .+..+.+|||||+..+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999987532  22222222222222233  346799999999877544        2334567899


Q ss_pred             EEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         79 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        79 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      ++++|+|..++.+....  .+...+...  +.|+++|+||+|+......                 .......+..++++
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~~  137 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEEDE-----------------AAEFYSLGFGEPIP  137 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHHH-----------------HHHHHhcCCCCeEE
Confidence            99999999875433322  344444443  6999999999998763210                 11222344337899


Q ss_pred             eccCCcCCHHHHHHHHHHHH
Q psy14754        159 CSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      +|++++.|++++++++.+.+
T Consensus       138 ~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         138 ISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             EecccCCCHHHHHHHHHhhC
Confidence            99999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=6.5e-24  Score=142.27  Aligned_cols=146  Identities=25%  Similarity=0.287  Sum_probs=100.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc--------ccccCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL--------RPLSYPD   76 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~   76 (192)
                      ++|+++|++|+|||||++++.+....... .++.+... ....+...+..+.+|||||...+...        ....+..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV-IEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-EEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            58999999999999999999987643221 22222111 11122233567899999997655322        1235668


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      +|++++|+|++++.+..... .+..     ..+.|+++|+||+|+......                   ..... ..++
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~vi~v~nK~D~~~~~~~-------------------~~~~~-~~~~  134 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLE-ILEL-----PADKPIIVVLNKSDLLPDSEL-------------------LSLLA-GKPI  134 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHH-HHHh-----hcCCCEEEEEEchhcCCcccc-------------------ccccC-CCce
Confidence            99999999999865554442 2221     347999999999999763211                   12222 3589


Q ss_pred             EEeccCCcCCHHHHHHHHHHHH
Q psy14754        157 LECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      +++||+++.|+++++++|...+
T Consensus       135 ~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         135 IAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            9999999999999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.5e-23  Score=140.77  Aligned_cols=147  Identities=16%  Similarity=0.193  Sum_probs=102.2

Q ss_pred             EEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCccccc------ccccC--CCCCEE
Q psy14754         10 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRL------RPLSY--PDTDVI   80 (192)
Q Consensus        10 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~~~~   80 (192)
                      ++|++|+|||||++++.+........++.+. .....+..+  +..+.+|||||+..+...      +..++  +.+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999987644333333222 223334444  357899999998776542      33344  489999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      ++|+|+.+++...    .+...+...  +.|+++++||+|+....            ... .....+...++ .+++++|
T Consensus        79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~------------~~~-~~~~~~~~~~~-~~~~~iS  138 (158)
T cd01879          79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKR------------GIK-IDLDKLSELLG-VPVVPTS  138 (158)
T ss_pred             EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccc------------cch-hhHHHHHHhhC-CCeEEEE
Confidence            9999998864322    333333333  79999999999996532            111 22345555555 5899999


Q ss_pred             cCCcCCHHHHHHHHHHHH
Q psy14754        161 AKSKEGVREVFETATRAA  178 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~  178 (192)
                      |.++.|++++++++.+.+
T Consensus       139 a~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         139 ARKGEGIDELKDAIAELA  156 (158)
T ss_pred             ccCCCCHHHHHHHHHHHh
Confidence            999999999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=1e-24  Score=143.60  Aligned_cols=148  Identities=16%  Similarity=0.225  Sum_probs=97.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc------ccc--CCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR------PLS--YPDT   77 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~--~~~~   77 (192)
                      ++|+++|.||+|||||+|+|++........|..+.. .....+...+..+.++|+||-.+.....      ..+  ....
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~-~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~   79 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVE-KKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP   79 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSE-EEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCee-eeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence            589999999999999999999988554333333322 2222223233689999999954433221      122  2579


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL  157 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
                      |++++|+|+++.+.  ++  ++...+...  +.|+++++||+|.....            . .......+.+.++ +|++
T Consensus        80 D~ii~VvDa~~l~r--~l--~l~~ql~e~--g~P~vvvlN~~D~a~~~------------g-~~id~~~Ls~~Lg-~pvi  139 (156)
T PF02421_consen   80 DLIIVVVDATNLER--NL--YLTLQLLEL--GIPVVVVLNKMDEAERK------------G-IEIDAEKLSERLG-VPVI  139 (156)
T ss_dssp             SEEEEEEEGGGHHH--HH--HHHHHHHHT--TSSEEEEEETHHHHHHT------------T-EEE-HHHHHHHHT-S-EE
T ss_pred             CEEEEECCCCCHHH--HH--HHHHHHHHc--CCCEEEEEeCHHHHHHc------------C-CEECHHHHHHHhC-CCEE
Confidence            99999999987432  11  344444444  89999999999997632            1 1223556777777 5999


Q ss_pred             EeccCCcCCHHHHHHHH
Q psy14754        158 ECSAKSKEGVREVFETA  174 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i  174 (192)
                      ++||++++|++++++.|
T Consensus       140 ~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  140 PVSARTGEGIDELKDAI  156 (156)
T ss_dssp             EEBTTTTBTHHHHHHHH
T ss_pred             EEEeCCCcCHHHHHhhC
Confidence            99999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.92  E-value=2.3e-24  Score=138.19  Aligned_cols=114  Identities=33%  Similarity=0.603  Sum_probs=88.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCC--cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ||+|+|++|||||||+++|.+.....  ...+... +..............+.+||++|++.+...+...+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999988761  1111222 22233445667777799999999988888777778999999999


Q ss_pred             EECCChhhhhchhhh--hHHHHhhhCCCCcEEEEeeccc
Q psy14754         84 FSIDSPDSLENIPEK--WTPEVKHFCPNVPIILVGNKKD  120 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~--~~~~~~~~~~~~p~ivv~nK~D  120 (192)
                      ||++++++++.+.+.  |+..+....++.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999987543  6777777677899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK00089 era GTPase Era; Reviewed

Probab=99.92  E-value=7.1e-24  Score=155.74  Aligned_cols=164  Identities=21%  Similarity=0.204  Sum_probs=110.8

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc--------ccc
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR--------LRP   71 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~   71 (192)
                      |+.+.-.|+++|++|||||||+|+|++.........+.++.. ...+. ..+...+.+|||||......        ...
T Consensus         1 ~~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~   79 (292)
T PRK00089          1 MGFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAW   79 (292)
T ss_pred             CCceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence            345667899999999999999999999876544322222222 22222 22347899999999644321        222


Q ss_pred             ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754         72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI  151 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (192)
                      ..+..+|++++|+|+++.  +......+...+...  +.|+++|+||+|+.....            ........+.+..
T Consensus        80 ~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~------------~l~~~~~~l~~~~  143 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEK--IGPGDEFILEKLKKV--KTPVILVLNKIDLVKDKE------------ELLPLLEELSELM  143 (292)
T ss_pred             HHHhcCCEEEEEEeCCCC--CChhHHHHHHHHhhc--CCCEEEEEECCcCCCCHH------------HHHHHHHHHHhhC
Confidence            356789999999999883  333333444444432  689999999999974211            1122333444444


Q ss_pred             CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        152 NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +..+++++||+++.|++++++++.+.+...
T Consensus       144 ~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~  173 (292)
T PRK00089        144 DFAEIVPISALKGDNVDELLDVIAKYLPEG  173 (292)
T ss_pred             CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence            556899999999999999999999887653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=4.2e-24  Score=164.78  Aligned_cols=160  Identities=18%  Similarity=0.197  Sum_probs=107.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee--eeeeEEEEECCeEEEEEEEeCCCCCcccccc-----------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--ENYVADIEVDSKQVELALWDTAGQEDYDRLR-----------   70 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------   70 (192)
                      ..++|+++|.+|+|||||+++|++...........+  +.....+..+  +..+.+|||||...+....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN--GKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC--CcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            358999999999999999999998764322222222  2222233333  3478999999976654332           


Q ss_pred             cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      ...++.+|++++|+|++++.+.+..  .+...+...  +.|+++|+||+|+......            .......+...
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~------------~~~~~~~~~~~  312 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDEKT------------REEFKKELRRK  312 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCHHH------------HHHHHHHHHHh
Confidence            2356789999999999987555443  344444443  7999999999998721110            00111112222


Q ss_pred             ---cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        151 ---INAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       151 ---~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                         .+..+++++||++|.|++++|+++.+.+...
T Consensus       313 ~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       313 LPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             cccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence               2336899999999999999999998876544

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.91  E-value=3.5e-24  Score=147.88  Aligned_cols=159  Identities=17%  Similarity=0.072  Sum_probs=108.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCcee---------------eeeeEEEEECCeEEEEEEEeCCCCCccccccc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF---------------ENYVADIEVDSKQVELALWDTAGQEDYDRLRP   71 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   71 (192)
                      +|+++|.+|+|||||+++|.+............               +..............+.+||+||+..+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999998876554322110               11111112233356899999999988888888


Q ss_pred             ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH-
Q psy14754         72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK-  150 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (192)
                      ..++.+|++++|+|+.++.....  ..++..+..  .+.|+++++||+|+.........          .....+..+. 
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~----------~~~~~~~~~~~  146 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVGEEDLEEV----------LREIKELLGLI  146 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHH----------HHHHHHHHccc
Confidence            88889999999999987643332  233444443  38999999999999763221111          1111122211 


Q ss_pred             ------------cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        151 ------------INAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       151 ------------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                                  ....+++++||+++.|++++++++.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                        12368999999999999999999988763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=3.1e-24  Score=166.54  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=104.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc--------ccccccccCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED--------YDRLRPLSYPDT   77 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~   77 (192)
                      .+|+|+|.+|+|||||+|+|++..........+.+...........+..+.+|||||.+.        +...+...++.+
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a  118 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTA  118 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhC
Confidence            689999999999999999999876543222222222222222222345689999999763        222344567889


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL  157 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
                      |++|+|+|++++.+...  ..+...++..  +.|+++|+||+|+....               .+....+...++  ..+
T Consensus       119 D~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~---------------~~~~~~~~~g~~--~~~  177 (472)
T PRK03003        119 DAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE---------------ADAAALWSLGLG--EPH  177 (472)
T ss_pred             CEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc---------------hhhHHHHhcCCC--CeE
Confidence            99999999998754432  3566666543  79999999999985421               111112222222  346


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhh
Q psy14754        158 ECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ++||++|.|++++|+++.+.+.+
T Consensus       178 ~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        178 PVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EEEcCCCCCcHHHHHHHHhhccc
Confidence            89999999999999999988865

>KOG4252|consensus

Probab=99.91  E-value=5.5e-26  Score=148.23  Aligned_cols=165  Identities=29%  Similarity=0.445  Sum_probs=147.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      .-+|++|+|..++||||++.+++++-|-..+..+++..+ .+++.+..+.+...+||++|+++|......+++++.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            468999999999999999999999999888887777555 5566677788889999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |++-+|..+|+... .|...+......+|.++|-||+|+.++            ..+...+...+++.++. -++.+|++
T Consensus        99 VFSTTDr~SFea~~-~w~~kv~~e~~~IPtV~vqNKIDlved------------s~~~~~evE~lak~l~~-RlyRtSvk  164 (246)
T KOG4252|consen   99 VFSTTDRYSFEATL-EWYNKVQKETERIPTVFVQNKIDLVED------------SQMDKGEVEGLAKKLHK-RLYRTSVK  164 (246)
T ss_pred             EEecccHHHHHHHH-HHHHHHHHHhccCCeEEeeccchhhHh------------hhcchHHHHHHHHHhhh-hhhhhhhh
Confidence            99999999999985 799999988889999999999999884            56778888888888874 78999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +..|+.++|..+..++....
T Consensus       165 ed~NV~~vF~YLaeK~~q~~  184 (246)
T KOG4252|consen  165 EDFNVMHVFAYLAEKLTQQK  184 (246)
T ss_pred             hhhhhHHHHHHHHHHHHHHH
Confidence            99999999999998876653

>COG1159 Era GTPase [General function prediction only]

Probab=99.91  E-value=6.8e-24  Score=150.05  Aligned_cols=164  Identities=18%  Similarity=0.134  Sum_probs=119.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc--------cccccccC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY--------DRLRPLSY   74 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~   74 (192)
                      .+.--|+++|.||+|||||+|++++.+....+....+++....--+..+...+.++||||...-        .......+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            4566799999999999999999999998877665555555333333444788999999994321        12223467


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF  154 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (192)
                      ..+|+++||+|+.++  +....+..++.+++  .+.|+++++||+|...+..            ........+....+..
T Consensus        84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~------------~l~~~~~~~~~~~~f~  147 (298)
T COG1159          84 KDVDLILFVVDADEG--WGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKT------------VLLKLIAFLKKLLPFK  147 (298)
T ss_pred             ccCcEEEEEEecccc--CCccHHHHHHHHhh--cCCCeEEEEEccccCCcHH------------HHHHHHHHHHhhCCcc
Confidence            789999999999875  44454566666665  3689999999999877422            1122333344445555


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .++++||+++.|++.+.+.+...+.+..
T Consensus       148 ~ivpiSA~~g~n~~~L~~~i~~~Lpeg~  175 (298)
T COG1159         148 EIVPISALKGDNVDTLLEIIKEYLPEGP  175 (298)
T ss_pred             eEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence            7999999999999999999999887754

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=1.7e-23  Score=160.23  Aligned_cols=151  Identities=21%  Similarity=0.246  Sum_probs=106.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc--------ccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR--------PLS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   73 (192)
                      ..++|+++|++|+|||||+|+|++...... ..++++ +.....+.++  +..+.+|||||...+...+        ...
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            468999999999999999999998754322 122222 2223333443  4678999999986654322        346


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ++.+|++++|+|++++.+.+..   |+..+..  .+.|+++|+||+|+...                  ....+.+.++ 
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~------------------~~~~~~~~~~-  335 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN------------------SLEFFVSSKV-  335 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc------------------chhhhhhhcC-
Confidence            7889999999999987665543   5554443  37899999999998542                  0122334444 


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .+++.+||++ .|++++++.+.+.+.+.
T Consensus       336 ~~~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       336 LNSSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             CceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            4789999998 69999999988887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01895 EngA2 EngA2 subfamily

Probab=99.91  E-value=2.9e-23  Score=141.28  Aligned_cols=156  Identities=18%  Similarity=0.211  Sum_probs=100.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee--eEEEEECCeEEEEEEEeCCCCCccccc-----------cc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY--VADIEVDSKQVELALWDTAGQEDYDRL-----------RP   71 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~   71 (192)
                      +++|+++|++|+|||||++++++.........+.++..  ...+..+  +..+.+||+||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            68999999999999999999998764322221111111  1222333  345789999997543211           11


Q ss_pred             ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754         72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI  151 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (192)
                      ..+..+|++++|+|+.++.+....  .+......  .+.|+++++||+|+......           ........+.+.+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~-----------~~~~~~~~~~~~~  144 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDSK-----------TMKEFKKEIRRKL  144 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccHH-----------HHHHHHHHHHhhc
Confidence            245689999999999987654433  23333332  27899999999998763210           0011112222222


Q ss_pred             ---CCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        152 ---NAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       152 ---~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                         +..+++++||++++|++++++++.+.
T Consensus       145 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         145 PFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence               23589999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=9.8e-24  Score=157.32  Aligned_cols=151  Identities=21%  Similarity=0.261  Sum_probs=103.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc-eeeeeeEEEEECCeEEEEEEEeCCCCCc---------ccccccccC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-VFENYVADIEVDSKQVELALWDTAGQED---------YDRLRPLSY   74 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~   74 (192)
                      -++|+++|.+|+|||||+|+|++........+. +.+.....+.+.+ +..+.+|||||..+         |...+ ..+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            389999999999999999999997643322222 2222334444432 35799999999722         22221 236


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      .++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.....                 ......  ..
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----------------v~~~~~--~~  326 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----------------IERLEE--GY  326 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh-----------------HHHHHh--CC
Confidence            789999999999998766655 34555554432 3789999999999864210                 011111  11


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        154 FAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      .+++++||+++.|+++++++|.+.
T Consensus       327 ~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       327 PEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CCEEEEEccCCCCHHHHHHHHHhh
Confidence            368999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0071|consensus

Probab=99.91  E-value=1.3e-23  Score=131.71  Aligned_cols=163  Identities=21%  Similarity=0.294  Sum_probs=125.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+++|+++|..++||||++.+|..+..... .|+.+-+..   ...+.++.+.+||.+|++..+..|.++++...++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCccc-ccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            3689999999999999999999987765443 444443322   345678899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|..+.+.+++..+.+...+... ..+.|++|.+||.|+..+....+..+.+..+..          .-..+-+.++||
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~----------r~~~W~vqp~~a  160 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERI----------RDRNWYVQPSCA  160 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccc----------cCCccEeecccc
Confidence            999999988998887777777653 357999999999999876443333222222111          111256788999


Q ss_pred             CCcCCHHHHHHHHHHHHh
Q psy14754        162 KSKEGVREVFETATRAAL  179 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~  179 (192)
                      .+++|+.+-|.|+...+.
T Consensus       161 ~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  161 LSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             ccchhHHHHHHHHHhhcc
Confidence            999999999999987653

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=1.1e-23  Score=146.07  Aligned_cols=148  Identities=18%  Similarity=0.141  Sum_probs=98.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh--CCCCCccc------------Ccee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK--DQFPEVYV------------PTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR   70 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~--~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   70 (192)
                      .+|+++|++++|||||+++|+.  +.+.....            .+.+ +.......+......+.+|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  44433220            0111 1112233445566789999999999999888


Q ss_pred             cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH-
Q psy14754         71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ-  149 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (192)
                      ..+++.+|++++|+|+++.. .... ..++.....  .+.|+++++||+|+......           ....+..++.. 
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~-----------~~~~~~~~~~~~  147 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARPE-----------EVVDEVFDLFIE  147 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHH-----------HHHHHHHHHHHH
Confidence            88999999999999998742 1111 233333332  37899999999998652110           01122222221 


Q ss_pred             ------HcCCceEEEeccCCcCCHHH
Q psy14754        150 ------KINAFAYLECSAKSKEGVRE  169 (192)
Q Consensus       150 ------~~~~~~~~~~Sa~~~~gi~~  169 (192)
                            ..+ ++++++||++|.|+.+
T Consensus       148 ~~~~~~~~~-~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         148 LGATEEQLD-FPVLYASAKNGWASLN  172 (194)
T ss_pred             hCCccccCc-cCEEEeehhccccccc
Confidence                  123 5899999999977633

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.1e-22  Score=154.12  Aligned_cols=157  Identities=22%  Similarity=0.220  Sum_probs=108.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCcccc----ccc---ccCCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYDR----LRP---LSYPDTD   78 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~~----~~~---~~~~~~~   78 (192)
                      .|+++|.||||||||++++++........+.++..... .+.+. ....+.+||+||.....+    +..   ..++.++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            79999999999999999999876543323333322221 12222 145799999999643211    222   2345689


Q ss_pred             EEEEEEECCCh---hhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         79 VILMCFSIDSP---DSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        79 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      ++++|+|+++.   +.++.. +.|...+..+.   .++|.+||+||+|+...                .+....+.+.++
T Consensus       239 llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----------------~e~l~~l~~~l~  301 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA----------------EENLEEFKEKLG  301 (424)
T ss_pred             EEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC----------------HHHHHHHHHHhC
Confidence            99999999864   445555 35666666543   37899999999997331                123445565555


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                       .+++++||++++|+++++++|.+.+...+
T Consensus       302 -~~i~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        302 -PKVFPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             -CcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence             58999999999999999999988876543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.91  E-value=5.4e-23  Score=137.85  Aligned_cols=142  Identities=17%  Similarity=0.174  Sum_probs=97.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc----cccCCCCCEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR----PLSYPDTDVILM   82 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~~~~~~~~~~i~   82 (192)
                      +|+++|++|+|||||++++.+.....  .++.      .+.+...    .+|||||.......+    ...++.+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccce------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999987654211  1111      1122222    269999973222111    223679999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC-ceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA-FAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa  161 (192)
                      |+|+++.+++..   .|+..+   ..+.|+++++||+|+...               ..+...++....+. .|++++||
T Consensus        71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~---------------~~~~~~~~~~~~~~~~p~~~~Sa  129 (158)
T PRK15467         71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA---------------DVAATRKLLLETGFEEPIFELNS  129 (158)
T ss_pred             EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc---------------cHHHHHHHHHHcCCCCCEEEEEC
Confidence            999998765532   233322   236899999999998541               13344556556653 48999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++++|++++|+.+.+.+.+.
T Consensus       130 ~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        130 HDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             CCccCHHHHHHHHHHhchhh
Confidence            99999999999998877554

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=1.9e-23  Score=160.65  Aligned_cols=148  Identities=24%  Similarity=0.312  Sum_probs=104.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCccccc--------cccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRL--------RPLS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   73 (192)
                      ..++|+++|.+|+|||||+|+|++..... ...+.++ +.....+.+  .+..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~--~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL--DGIPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE--CCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            35899999999999999999999876432 2222222 222333344  3467899999998654432        1235


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ++.+|++++|+|++++.+.+.. +.|..     ..+.|+++|+||+|+.+...            ..        ...+ 
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~------------~~--------~~~~-  344 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID------------LE--------EENG-  344 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch------------hh--------hccC-
Confidence            6789999999999988665543 23332     34799999999999965311            00        1222 


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      .+++++||++|.|++++++++.+.+..
T Consensus       345 ~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        345 KPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            578999999999999999999988754

>cd01889 SelB_euk SelB subfamily

Probab=99.90  E-value=9.9e-24  Score=146.06  Aligned_cols=162  Identities=18%  Similarity=0.146  Sum_probs=100.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC----CCCCcc---cCcee-eeeeEEEEEC------------CeEEEEEEEeCCCCCc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD----QFPEVY---VPTVF-ENYVADIEVD------------SKQVELALWDTAGQED   65 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~----~~~~~~---~~~~~-~~~~~~~~~~------------~~~~~~~l~D~~g~~~   65 (192)
                      ++|+++|++++|||||+++|...    .+...+   .+..+ ........+.            .+...+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    111111   11111 1111122222            3367899999999866


Q ss_pred             ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy14754         66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR  145 (192)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  145 (192)
                      +..........+|++++|+|+++....+.. +.+. .....  +.|+++++||+|+........          ..++..
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~~--~~~~iiv~NK~Dl~~~~~~~~----------~~~~~~  146 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEIL--CKKLIVVLNKIDLIPEEERER----------KIEKMK  146 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHHc--CCCEEEEEECcccCCHHHHHH----------HHHHHH
Confidence            543333445678999999999875332222 1222 12222  679999999999864221100          011111


Q ss_pred             H-HHHH-----cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        146 A-MAQK-----INAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       146 ~-~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      + +...     ...++++++||++++|++++++++...+.-+
T Consensus       147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            1 1111     2336899999999999999999999887643

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=1.2e-22  Score=159.97  Aligned_cols=162  Identities=20%  Similarity=0.272  Sum_probs=107.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      .++.+|+++|++++|||||+++|.+..+.....+..+... ...+...+. ..+.+||||||+.|...+...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            3678999999999999999999998877665443333222 222233222 27899999999999988888889999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-CceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-AFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S  160 (192)
                      +|+|+++...-+.. +. +.....  .+.|+++++||+|+...... .....+.       ........++ ..+++++|
T Consensus       164 LVVda~dgv~~qT~-e~-i~~~~~--~~vPiIVviNKiDl~~~~~e-~v~~~L~-------~~g~~~~~~~~~~~~v~iS  231 (587)
T TIGR00487       164 LVVAADDGVMPQTI-EA-ISHAKA--ANVPIIVAINKIDKPEANPD-RVKQELS-------EYGLVPEDWGGDTIFVPVS  231 (587)
T ss_pred             EEEECCCCCCHhHH-HH-HHHHHH--cCCCEEEEEECcccccCCHH-HHHHHHH-------HhhhhHHhcCCCceEEEEE
Confidence            99999874221111 12 222222  37999999999998653210 0000000       0000111222 25799999


Q ss_pred             cCCcCCHHHHHHHHHHH
Q psy14754        161 AKSKEGVREVFETATRA  177 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~  177 (192)
                      |++|+|++++++++...
T Consensus       232 AktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       232 ALTGDGIDELLDMILLQ  248 (587)
T ss_pred             CCCCCChHHHHHhhhhh
Confidence            99999999999998653

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG1673|consensus

Probab=99.90  E-value=1e-22  Score=129.92  Aligned_cols=170  Identities=23%  Similarity=0.451  Sum_probs=142.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||.++|++..|||||+-++.++.+.+.+..+.+-+. .+.+.+.+..+.+.+||.+|++++....+..+.++-++++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            478999999999999999999999998877777766555 6677889999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      ++|++.+..+..+. .|.+..+...+..--|+|+||-|+.-..+...+.       .-...++.+++..++ +.|.+|+.
T Consensus        99 mFDLt~r~TLnSi~-~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~-------~I~~qar~YAk~mnA-sL~F~Sts  169 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIK-EWYRQARGLNKTAIPILVGTKYDLFIDLPPELQE-------TISRQARKYAKVMNA-SLFFCSTS  169 (205)
T ss_pred             EEecCchHHHHHHH-HHHHHHhccCCccceEEeccchHhhhcCCHHHHH-------HHHHHHHHHHHHhCC-cEEEeecc
Confidence            99999999999885 7999988876666668999999986543322111       112345677888884 99999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .+.|++++|+.+..++++-.
T Consensus       170 ~sINv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  170 HSINVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             ccccHHHHHHHHHHHHhCCc
Confidence            99999999999999887653

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.90  E-value=2.5e-23  Score=144.85  Aligned_cols=169  Identities=15%  Similarity=0.201  Sum_probs=112.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCcccccccccCCCC-CEEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT-DVILMCF   84 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-~~~i~v~   84 (192)
                      +|+++|+++||||||+++|....+..+..++ ...... ..........+.+||+||+..++..+...++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998876654333 222211 111123457899999999999988888888888 9999999


Q ss_pred             ECCCh-hhhhchhhhhHHHHhh---hCCCCcEEEEeecccccCCccchhhhhhccC---------------CCCCHH---
Q psy14754         85 SIDSP-DSLENIPEKWTPEVKH---FCPNVPIILVGNKKDLRNDPNTIKELNKMKQ---------------EPVKPE---  142 (192)
Q Consensus        85 d~~~~-~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---------------~~~~~~---  142 (192)
                      |+++. .++....+.+...+..   ..++.|++|++||+|+..+.+.......+..               ......   
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~  160 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE  160 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            99997 5676665555554432   2358999999999999765543221100000               000000   


Q ss_pred             -------HHHHHHHHcCCceEEEeccCCcC-CHHHHHHHHHH
Q psy14754        143 -------EGRAMAQKINAFAYLECSAKSKE-GVREVFETATR  176 (192)
Q Consensus       143 -------~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~i~~  176 (192)
                             ....|...-..+.++++|++.+. |++.+.+||.+
T Consensus       161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                   00012111123578899998876 69999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=5.6e-23  Score=140.36  Aligned_cols=153  Identities=25%  Similarity=0.283  Sum_probs=97.9

Q ss_pred             EEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc----cccc---cccCCCCCEEE
Q psy14754         10 IVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY----DRLR---PLSYPDTDVIL   81 (192)
Q Consensus        10 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~---~~~~~~~~~~i   81 (192)
                      ++|++|||||||+++|.+........+.++ ......+.+. .+..+.+|||||....    ...+   ...++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999865222112222 1112222222 1567899999996331    2222   22467899999


Q ss_pred             EEEECCCh------hhhhchhhhhHHHHhhhC--------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy14754         82 MCFSIDSP------DSLENIPEKWTPEVKHFC--------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM  147 (192)
Q Consensus        82 ~v~d~~~~------~~~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (192)
                      +|+|+++.      .++... ..|...+....        .+.|+++|+||+|+.....            .........
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~~~~~~~~~  146 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE------------LEEELVREL  146 (176)
T ss_pred             EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH------------HHHHHHHHH
Confidence            99999987      355554 34544444322        3799999999999975321            111111122


Q ss_pred             HHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        148 AQKINAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       148 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      .... ..+++++||+++.|++++++++.+.
T Consensus       147 ~~~~-~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         147 ALEE-GAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hcCC-CCCEEEEehhhhcCHHHHHHHHHhh
Confidence            2222 3579999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.90  E-value=3.7e-23  Score=144.18  Aligned_cols=164  Identities=16%  Similarity=0.115  Sum_probs=101.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCC---cccCcee-eeeeEEEEE-------------------------CC------
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVF-ENYVADIEV-------------------------DS------   50 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~-~~~~~~~~~-------------------------~~------   50 (192)
                      ++|+++|+.|+|||||+.++.+.....   ......+ ......+..                         ..      
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999997642111   0000000 000000000                         00      


Q ss_pred             eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy14754         51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE  130 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  130 (192)
                      ....+.+|||||++.+...+...+..+|++++|+|++++.......+.+ ..+... ...|+++++||+|+.......  
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~~-~~~~iiivvNK~Dl~~~~~~~--  156 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEIM-GLKHIIIVQNKIDLVKEEQAL--  156 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHHc-CCCcEEEEEEchhccCHHHHH--
Confidence            1267899999999988887777788899999999998742111111222 222221 235799999999986521110  


Q ss_pred             hhhccCCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        131 LNKMKQEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                              ...++.+++...+  ..++++++||++++|+++++++|.+.+.++
T Consensus       157 --------~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         157 --------ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             --------HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence                    0012222333222  235899999999999999999999877654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.90  E-value=2e-23  Score=144.07  Aligned_cols=162  Identities=19%  Similarity=0.247  Sum_probs=108.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc--c---------------CceeeeeeEEEEEC--CeEEEEEEEeCCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--V---------------PTVFENYVADIEVD--SKQVELALWDTAGQE   64 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~---------------~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~   64 (192)
                      ..++|+++|+.++|||||+++|+........  .               ....+.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3578999999999999999999864422110  0               00011111122233  556789999999999


Q ss_pred             cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH
Q psy14754         65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG  144 (192)
Q Consensus        65 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  144 (192)
                      +|.......++.+|++|+|+|+.++  ........+..+...  +.|++|++||+|+.....          +....+..
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g--~~~~~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~----------~~~~~~~~  147 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDG--IQPQTEEHLKILREL--GIPIIVVLNKMDLIEKEL----------EEIIEEIK  147 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTB--STHHHHHHHHHHHHT--T-SEEEEEETCTSSHHHH----------HHHHHHHH
T ss_pred             ceeecccceecccccceeeeecccc--ccccccccccccccc--ccceEEeeeeccchhhhH----------HHHHHHHH
Confidence            9888888888999999999999976  333223455555554  799999999999872110          00111111


Q ss_pred             HHHHHHc-----CCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        145 RAMAQKI-----NAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       145 ~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      ..+.+..     ..+|++++||++|.|++++++.+.+.+.
T Consensus       148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            1333222     2368999999999999999999988753

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=7.5e-23  Score=158.02  Aligned_cols=164  Identities=18%  Similarity=0.158  Sum_probs=106.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc-----------cc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR-----------PL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------~~   72 (192)
                      ..++|+++|.+|+|||||+++|++..........+++.......+...+..+.+|||||........           ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~  251 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK  251 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence            4689999999999999999999987643322222222222222233344568899999965432221           23


Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      .++.+|++|+|+|++++.+.+..  .+...+...  +.|+++++||+|+.......         .. ............
T Consensus       252 ~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~---------~~-~~~~~~~l~~~~  317 (435)
T PRK00093        252 AIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKTME---------EF-KKELRRRLPFLD  317 (435)
T ss_pred             HHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHHHH---------HH-HHHHHHhccccc
Confidence            56789999999999987554443  444444443  79999999999987321100         00 011111111223


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ..|++++||+++.|++++++.+.+.....
T Consensus       318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        318 YAPIVFISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            46899999999999999999988766543

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=1.7e-22  Score=159.66  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC-------CCCcccCc-------eeeeeeEE--EEE---CCeEEEEEEEeCCCCCcc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ-------FPEVYVPT-------VFENYVAD--IEV---DSKQVELALWDTAGQEDY   66 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~-------~~~~~~~~--~~~---~~~~~~~~l~D~~g~~~~   66 (192)
                      .+++++|+.++|||||+++|+...       +...+..+       +.+.....  +.+   ++..+.+.+|||||+.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            489999999999999999998742       11111111       11111111  222   355689999999999999


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      ...+...++.+|++|+|+|++++.+.+.. ..|.....   .+.|+++|+||+|+.....              .....+
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~~--------------~~~~~e  145 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSADP--------------ERVKKE  145 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccCH--------------HHHHHH
Confidence            98888899999999999999987555544 24444333   2789999999999854211              112233


Q ss_pred             HHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        147 MAQKINA--FAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       147 ~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +.+.++.  .+++++||++|.|++++|++|.+.+..+.
T Consensus       146 l~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       146 IEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             HHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            4444432  24899999999999999999999887654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=2.4e-22  Score=151.46  Aligned_cols=161  Identities=18%  Similarity=0.123  Sum_probs=107.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-------ccccCCCCCE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-------RPLSYPDTDV   79 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~~   79 (192)
                      .|+++|.||||||||+|+|++.+......|.++.....-+........+.++||||...-.+.       ....++.+++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv  240 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV  240 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence            689999999999999999998765433334433332222211122346899999996432111       1124678999


Q ss_pred             EEEEEECC---ChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         80 ILMCFSID---SPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        80 ~i~v~d~~---~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      +++|+|++   +.+.++.. ..|...+..+.   .+.|+++|+||+|+.....             ..+...++.+.++.
T Consensus       241 lL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-------------l~~~l~~l~~~~~~  306 (390)
T PRK12298        241 LLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-------------AEERAKAIVEALGW  306 (390)
T ss_pred             EEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-------------HHHHHHHHHHHhCC
Confidence            99999988   33444444 35666666543   3689999999999864211             12233344444332


Q ss_pred             -ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        154 -FAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       154 -~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                       .+++++||+++.|++++++.|.+.+.+.
T Consensus       307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        307 EGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence             3689999999999999999999988664

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.89  E-value=2.6e-22  Score=160.27  Aligned_cols=163  Identities=22%  Similarity=0.285  Sum_probs=109.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee---eeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE---NYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI   80 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   80 (192)
                      +..+|+++|++++|||||+++|....+.....+..+.   .+............+.+|||||++.|...+...+..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            5679999999999999999999987765543322221   1122222334568899999999999998888888999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-CceEEEe
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-AFAYLEC  159 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (192)
                      |+|+|++++...+.. +.| ..+..  .+.|+||++||+|+...... .....+...       ..+...++ .++++++
T Consensus       323 ILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~~e-~v~~eL~~~-------~ll~e~~g~~vpvv~V  390 (742)
T CHL00189        323 ILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANANTE-RIKQQLAKY-------NLIPEKWGGDTPMIPI  390 (742)
T ss_pred             EEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccCHH-HHHHHHHHh-------ccchHhhCCCceEEEE
Confidence            999999875322221 122 22222  37999999999998653210 000000000       00112222 3689999


Q ss_pred             ccCCcCCHHHHHHHHHHHH
Q psy14754        160 SAKSKEGVREVFETATRAA  178 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ||++|.|+++++++|....
T Consensus       391 SAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        391 SASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ECCCCCCHHHHHHhhhhhh
Confidence            9999999999999988764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=1.3e-22  Score=156.50  Aligned_cols=154  Identities=18%  Similarity=0.167  Sum_probs=104.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc--------ccccccccCCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED--------YDRLRPLSYPDTD   78 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~~   78 (192)
                      +|+++|.+|+|||||+|+|.+..........+.+...........+..+.+|||||...        +.......++.+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            58999999999999999999877433222222222221112222345799999999632        2333455678899


Q ss_pred             EEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         79 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        79 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      ++++|+|+.++.  ......+...+++.  ++|+++|+||+|+.....                ...++ ..++..++++
T Consensus        81 ~vl~vvD~~~~~--~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~----------------~~~~~-~~lg~~~~~~  139 (429)
T TIGR03594        81 VILFVVDGREGL--TPEDEEIAKWLRKS--GKPVILVANKIDGKKEDA----------------VAAEF-YSLGFGEPIP  139 (429)
T ss_pred             EEEEEEeCCCCC--CHHHHHHHHHHHHh--CCCEEEEEECccCCcccc----------------cHHHH-HhcCCCCeEE
Confidence            999999998753  22223455555554  799999999999865311                11122 2344347899


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhh
Q psy14754        159 CSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +||.+|.|++++++++.+.+...
T Consensus       140 vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       140 ISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             EeCCcCCChHHHHHHHHHhcCcc
Confidence            99999999999999999887553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=2.5e-22  Score=155.16  Aligned_cols=150  Identities=22%  Similarity=0.239  Sum_probs=100.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCcee-eeeeEEEEECCeEEEEEEEeCCCCCc--------ccccccccCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVF-ENYVADIEVDSKQVELALWDTAGQED--------YDRLRPLSYP   75 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~   75 (192)
                      ++|+++|.+|+|||||+|+|.+....... .+..+ ......+...  +..+.+|||||+..        +.......++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL--GREFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC--CcEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987643221 22222 2222333333  37899999999876        2222344567


Q ss_pred             CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      .+|++|+|+|+.++.+.  ....+...++..  +.|+++|+||+|+...                .....++ ..++.-.
T Consensus        80 ~ad~il~vvd~~~~~~~--~~~~~~~~l~~~--~~piilv~NK~D~~~~----------------~~~~~~~-~~lg~~~  138 (435)
T PRK00093         80 EADVILFVVDGRAGLTP--ADEEIAKILRKS--NKPVILVVNKVDGPDE----------------EADAYEF-YSLGLGE  138 (435)
T ss_pred             hCCEEEEEEECCCCCCH--HHHHHHHHHHHc--CCcEEEEEECccCccc----------------hhhHHHH-HhcCCCC
Confidence            89999999999875322  222333444443  7999999999996431                1112222 2334334


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHH
Q psy14754        156 YLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ++++||++|.|++++++.+....
T Consensus       139 ~~~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        139 PYPISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             CEEEEeeCCCCHHHHHHHHHhhC
Confidence            78999999999999999998743

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=4.9e-22  Score=152.47  Aligned_cols=161  Identities=19%  Similarity=0.182  Sum_probs=103.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-------ccccCCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-------RPLSYPDTD   78 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~   78 (192)
                      ..|+++|.||||||||+++|.+........+.++...... .+......+.+||+||.....+.       ....++.++
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lG-vv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad  238 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLG-VVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA  238 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEE-EEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence            4799999999999999999998765433333333222211 12223467999999995321111       122356799


Q ss_pred             EEEEEEECCCh----hhhhchhhhhHHHHhhh------------CCCCcEEEEeecccccCCccchhhhhhccCCCCCHH
Q psy14754         79 VILMCFSIDSP----DSLENIPEKWTPEVKHF------------CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPE  142 (192)
Q Consensus        79 ~~i~v~d~~~~----~~~~~~~~~~~~~~~~~------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  142 (192)
                      ++|+|+|+++.    +.++.+ +.|...+..+            ..+.|++||+||+|+.....            . .+
T Consensus       239 vLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e------------l-~e  304 (500)
T PRK12296        239 VLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE------------L-AE  304 (500)
T ss_pred             EEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH------------H-HH
Confidence            99999999863    233333 2333333322            23689999999999864211            0 11


Q ss_pred             HHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        143 EGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       143 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .........+ ++++++||++++|+++++.+|.+.+...+
T Consensus       305 ~l~~~l~~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        305 FVRPELEARG-WPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            1111222334 68999999999999999999998887654

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=7.3e-22  Score=158.99  Aligned_cols=161  Identities=22%  Similarity=0.284  Sum_probs=108.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      .+...|+++|+.++|||||+++|.+..+.....+..+... ...+.+.  +..+.+|||||+..|...+...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4678999999999999999999988776654333322211 1222333  467899999999999998888888999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-CceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-AFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S  160 (192)
                      +|+|+++...-+.. +.| .....  .+.|+||++||+|+...+.. .....+.       ....+...++ .++++++|
T Consensus       366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~e-~V~~eL~-------~~~~~~e~~g~~vp~vpvS  433 (787)
T PRK05306        366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANPD-RVKQELS-------EYGLVPEEWGGDTIFVPVS  433 (787)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCHH-HHHHHHH-------HhcccHHHhCCCceEEEEe
Confidence            99999874211111 122 22222  37999999999999653210 0000000       0001122232 36899999


Q ss_pred             cCCcCCHHHHHHHHHHH
Q psy14754        161 AKSKEGVREVFETATRA  177 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~  177 (192)
                      |++|.|+++++++|...
T Consensus       434 AktG~GI~eLle~I~~~  450 (787)
T PRK05306        434 AKTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCCchHHHHhhhhh
Confidence            99999999999998754

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=8.4e-22  Score=150.15  Aligned_cols=155  Identities=19%  Similarity=0.162  Sum_probs=102.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc--cccc------cccCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY--DRLR------PLSYPD   76 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~------~~~~~~   76 (192)
                      .+|+++|.+|+|||||+|+|.+..+.....+..+ +.....+...+ ...+.+|||||..+.  ...+      ...++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            5899999999999999999998765432222222 22233344433 226789999997332  1111      123578


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      +|++|+|+|++++.+...+. .|...+.... .+.|+++|+||+|+.....               ... .. ...+ .+
T Consensus       277 ADlIL~VvDaS~~~~~e~l~-~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---------------~~~-~~-~~~~-~~  337 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIE-AVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---------------PRI-DR-DEEN-KP  337 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHH-HHHHHHHHhccCCCCEEEEEEcccCCCchh---------------HHH-HH-HhcC-CC
Confidence            99999999999987666652 3444443322 3799999999999864210               000 00 1122 23


Q ss_pred             -EEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        156 -YLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       156 -~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                       ++.+||++|.|+++++++|.+.+..
T Consensus       338 ~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        338 IRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence             5889999999999999999998854

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=4.3e-22  Score=161.14  Aligned_cols=158  Identities=18%  Similarity=0.185  Sum_probs=105.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCC--CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc-ccc----------c
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY-DRL----------R   70 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~----------~   70 (192)
                      ..+||+++|.+|+|||||+|+|++....  .....++.+.....+.+++  ..+.+|||||.... ...          .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            3589999999999999999999998743  2222222222233334444  35679999995421 111          1


Q ss_pred             cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HHHH
Q psy14754         71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AMAQ  149 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  149 (192)
                      ...++.+|++++|+|++++.+.+..  .+...+...  +.|+++|+||+|+.+...              .+... .+..
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~--~i~~~~~~~--~~piIiV~NK~DL~~~~~--------------~~~~~~~~~~  588 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDL--KVMSMAVDA--GRALVLVFNKWDLMDEFR--------------RQRLERLWKT  588 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEEchhcCChhH--------------HHHHHHHHHH
Confidence            2346789999999999988666654  344444433  799999999999965211              01111 1111


Q ss_pred             ---HcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        150 ---KINAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       150 ---~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                         .....+++++||++|.|++++++.+.+.+...
T Consensus       589 ~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        589 EFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             hccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence               12335789999999999999999999887654

>cd00880 Era_like Era (E

Probab=99.88  E-value=9.2e-22  Score=131.89  Aligned_cols=154  Identities=21%  Similarity=0.206  Sum_probs=101.1

Q ss_pred             EEcCCCCchhHHHHHHhhCCCCC-cccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc-------ccCCCCCEEE
Q psy14754         10 IVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP-------LSYPDTDVIL   81 (192)
Q Consensus        10 v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~~~~~~~~i   81 (192)
                      ++|++|||||||++++.+..... ...+..+...............+.+||+||...+.....       ..++.+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            58999999999999999876552 222222222221111111156899999999876654333       3677899999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|+|+.+........  +......  .+.|+++++||+|+...........          ............+++++|+
T Consensus        81 ~v~~~~~~~~~~~~~--~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~sa  146 (163)
T cd00880          81 FVVDADLRADEEEEK--LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLE----------LRLLILLLLLGLPVIAVSA  146 (163)
T ss_pred             EEEeCCCCCCHHHHH--HHHHHHh--cCCeEEEEEEccccCChhhHHHHHH----------HHHhhcccccCCceEEEee
Confidence            999999875554442  3333332  3899999999999876432111100          0112222334468999999


Q ss_pred             CCcCCHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRA  177 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~  177 (192)
                      .++.|++++++++.+.
T Consensus       147 ~~~~~v~~l~~~l~~~  162 (163)
T cd00880         147 LTGEGIDELREALIEA  162 (163)
T ss_pred             eccCCHHHHHHHHHhh
Confidence            9999999999998875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.88  E-value=6.7e-22  Score=156.23  Aligned_cols=158  Identities=18%  Similarity=0.180  Sum_probs=108.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC---CCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ---FPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +.|+++|++++|||||+++|.+..   ++....++.+... ...+..+  +..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--DYRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--CEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999643   2222223332222 2223333  378999999999999888888889999999


Q ss_pred             EEEECCCh---hhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC---Cc
Q psy14754         82 MCFSIDSP---DSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN---AF  154 (192)
Q Consensus        82 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  154 (192)
                      +|+|++++   ++.+.+     ..+...  +.| ++|++||+|+.+....          ....++...+...++   ..
T Consensus        79 LVVDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~~----------~~~~~ei~~~l~~~~~~~~~  141 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEEI----------KRTEMFMKQILNSYIFLKNA  141 (581)
T ss_pred             EEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHHH----------HHHHHHHHHHHHHhCCCCCC
Confidence            99999983   333332     233322  677 9999999999652110          011223344444332   36


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +++++||++|+|++++++.+...+....
T Consensus       142 ~ii~vSA~tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       142 KIFKTSAKTGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             cEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence            8999999999999999999877665543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=7.9e-22  Score=146.91  Aligned_cols=167  Identities=19%  Similarity=0.150  Sum_probs=121.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc-----------cc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR-----------PL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------~~   72 (192)
                      ..+||+++|.||+|||||+|++++.........++++.......++.++..+.++||+|...-....           ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            4699999999999999999999999887777677777766666666667789999999954322221           23


Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      .+..+|.+++|+|++.+-+-++  ......+.+.  +.+++|++||+|+.+.+...        ......+..+.....+
T Consensus       257 aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~--------~~~~k~~i~~~l~~l~  324 (444)
T COG1160         257 AIERADVVLLVIDATEGISEQD--LRIAGLIEEA--GRGIVIVVNKWDLVEEDEAT--------MEEFKKKLRRKLPFLD  324 (444)
T ss_pred             HHhhcCEEEEEEECCCCchHHH--HHHHHHHHHc--CCCeEEEEEccccCCchhhH--------HHHHHHHHHHHhcccc
Confidence            4567999999999998744443  4677777665  89999999999997742110        0011122233333445


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ..|++.+||+++.|++++|+.+.+......
T Consensus       325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~  354 (444)
T COG1160         325 FAPIVFISALTGQGLDKLFEAIKEIYECAT  354 (444)
T ss_pred             CCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence            468999999999999999999887765543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=7.1e-22  Score=137.25  Aligned_cols=159  Identities=13%  Similarity=0.121  Sum_probs=98.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc----------cccccccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED----------YDRLRPLS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~   73 (192)
                      ..++|+++|++|+|||||++++.+..+.....++.+.+..... .. ....+.+|||||...          +......+
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~-~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~  100 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF-FE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY  100 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEE-Ee-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence            4689999999999999999999987643333333222111111 11 135799999999532          11122222


Q ss_pred             CC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         74 YP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        74 ~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      ++   ..+++++++|.+++.....  ..+...+...  +.|+++++||+|+.+.....          .......+....
T Consensus       101 ~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~----------~~~~~i~~~l~~  166 (196)
T PRK00454        101 LRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKEY--GIPVLIVLTKADKLKKGERK----------KQLKKVRKALKF  166 (196)
T ss_pred             HHhCccceEEEEEEecCCCCCHHH--HHHHHHHHHc--CCcEEEEEECcccCCHHHHH----------HHHHHHHHHHHh
Confidence            22   4478888899876532222  1233333332  78999999999986532110          011122233322


Q ss_pred             cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        151 INAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      . ..+++++||+++.|++++++.|.+.+-
T Consensus       167 ~-~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        167 G-DDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             c-CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            2 258899999999999999999987664

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.88  E-value=2.3e-22  Score=137.76  Aligned_cols=149  Identities=14%  Similarity=0.126  Sum_probs=91.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCc----------cccccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED----------YDRLRP   71 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~   71 (192)
                      ...++|+++|++|+|||||++++.+..+.....++...+. ......+.   .+.+|||||...          +.....
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            4678999999999999999999998763332222222211 11122221   689999999532          111111


Q ss_pred             ccCC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH
Q psy14754         72 LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA  148 (192)
Q Consensus        72 ~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (192)
                      .+++   .++++++|+|++++-+...  ..+...+...  +.|+++++||+|+.......          ...++.++..
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~--~~~~~~~~~~--~~pviiv~nK~D~~~~~~~~----------~~~~~i~~~l  158 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELD--LEMLEWLRER--GIPVLIVLTKADKLKKSELN----------KQLKKIKKAL  158 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccCCHHHHH----------HHHHHHHHHH
Confidence            2222   4689999999987533222  2334444443  78999999999986532211          1122233333


Q ss_pred             HHcC-CceEEEeccCCcCCHH
Q psy14754        149 QKIN-AFAYLECSAKSKEGVR  168 (192)
Q Consensus       149 ~~~~-~~~~~~~Sa~~~~gi~  168 (192)
                      ...+ ..+++++||++|+|++
T Consensus       159 ~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       159 KKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             hhccCCCceEEEECCCCCCCC
Confidence            3332 2479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.88  E-value=1.4e-21  Score=153.63  Aligned_cols=167  Identities=19%  Similarity=0.241  Sum_probs=104.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee----eeeEEEEE--------------CCeEEEEEEEeCCCCCc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE----NYVADIEV--------------DSKQVELALWDTAGQED   65 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~l~D~~g~~~   65 (192)
                      +..-|+++|++++|||||+++|.+..+........+.    ... ....              +.....+.+|||||++.
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v-~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~   81 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI-PMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA   81 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe-eeccccccccccccccccccccCcEEEEECCCcHh
Confidence            5567999999999999999999988765432221111    111 0000              00112388999999999


Q ss_pred             ccccccccCCCCCEEEEEEECCCh---hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc---hhhhh-------
Q psy14754         66 YDRLRPLSYPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT---IKELN-------  132 (192)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~-------  132 (192)
                      |...+...++.+|++++|+|+++.   ++++.+     ..+...  +.|+++++||+|+...-..   ...++       
T Consensus        82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~  154 (590)
T TIGR00491        82 FTNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI  154 (590)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence            999888888999999999999873   333322     223322  7899999999999642110   00000       


Q ss_pred             ---------------hccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        133 ---------------KMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       133 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                                     .+.......+......+..+..+++++||++|+|+++++.++....
T Consensus       155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                           0000001111111111223447899999999999999999886543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=9.6e-22  Score=159.17  Aligned_cols=155  Identities=16%  Similarity=0.137  Sum_probs=104.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc--------cccccccCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY--------DRLRPLSYPD   76 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~   76 (192)
                      -.+|+++|.+|+|||||+|+|++..........+.+...........+..+.+|||||....        .......++.
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~  354 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL  354 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence            46899999999999999999998764332222222222222222223457899999997532        2223345678


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      +|++|+|+|+++.  +....+.|...++..  +.|+++|+||+|+....                ....++.. ++.-..
T Consensus       355 aD~iL~VvDa~~~--~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~----------------~~~~~~~~-lg~~~~  413 (712)
T PRK09518        355 ADAVVFVVDGQVG--LTSTDERIVRMLRRA--GKPVVLAVNKIDDQASE----------------YDAAEFWK-LGLGEP  413 (712)
T ss_pred             CCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEECcccccch----------------hhHHHHHH-cCCCCe
Confidence            9999999999864  444444566666654  89999999999975410                11112211 221245


Q ss_pred             EEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        157 LECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++||++|.|++++++++.+.+..
T Consensus       414 ~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        414 YPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             EEEECCCCCCchHHHHHHHHhccc
Confidence            789999999999999999988865

>KOG0072|consensus

Probab=99.87  E-value=1e-22  Score=128.35  Aligned_cols=164  Identities=18%  Similarity=0.260  Sum_probs=122.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ++.+|+++|..|+||||+..++.-+....+ .|+.+.+..   .+.+++.++++||.+|+-+.+..|+.++.+.|++|+|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence            789999999999999999888776655443 444443332   3456889999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      +|.+|.+........+..++.+ ...+..+++++||.|....-...+....+..        ..+.+  ..+.+|.+||.
T Consensus        93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l--------~~Lk~--r~~~Iv~tSA~  162 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGL--------QKLKD--RIWQIVKTSAV  162 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhCh--------HHHhh--heeEEEeeccc
Confidence            9999988777665556665543 3457889999999998763222211111111        11212  23789999999


Q ss_pred             CcCCHHHHHHHHHHHHhhh
Q psy14754        163 SKEGVREVFETATRAALQV  181 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~  181 (192)
                      +|+|+++.++|+.+.+..+
T Consensus       163 kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  163 KGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             cccCCcHHHHHHHHHHhcc
Confidence            9999999999999887654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.87  E-value=2.3e-21  Score=137.69  Aligned_cols=169  Identities=18%  Similarity=0.125  Sum_probs=112.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCC--------cc-----c----CceeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPE--------VY-----V----PTVFENYVADIEVDSKQVELALWDTAGQEDYDRL   69 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~--------~~-----~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   69 (192)
                      +|+++|+.|+|||||+++|+...-..        ..     .    ....+.......+...+..+.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            58999999999999999998642110        00     0    0000111122334455678999999999999888


Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchh--hh----------------
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIK--EL----------------  131 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~----------------  131 (192)
                      +...++.+|++++|+|+++...  ...+.+...+...  +.|+++++||+|+........  .+                
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~--~~~~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~  156 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQ--AQTRILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL  156 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCC--HHHHHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence            8888999999999999998633  2224555555554  799999999999975332100  00                


Q ss_pred             ---------------------------hhccCCCCCHHHHHHH----HHHcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        132 ---------------------------NKMKQEPVKPEEGRAM----AQKINAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       132 ---------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                                                 .++.....+.++...-    ......+|++..||.++.|++.+++.+.+.+.
T Consensus       157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence                                       2222233444333321    12234478999999999999999999988764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.87  E-value=1.2e-21  Score=146.38  Aligned_cols=155  Identities=23%  Similarity=0.221  Sum_probs=118.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc--------ccCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP--------LSYP   75 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~--------~~~~   75 (192)
                      .-+|++++|.||+|||||+|+|++......+.-+++++......+.-.++.+.+.||+|..+..+...        ..++
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~  295 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE  295 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999888877777777777777888889999999999765544332        3467


Q ss_pred             CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      .+|.+++|+|.+.+.  .......+.   ....++|+++|.||.|+......                 ..+ +..+..+
T Consensus       296 ~ADlvL~v~D~~~~~--~~~d~~~~~---~~~~~~~~i~v~NK~DL~~~~~~-----------------~~~-~~~~~~~  352 (454)
T COG0486         296 EADLVLFVLDASQPL--DKEDLALIE---LLPKKKPIIVVLNKADLVSKIEL-----------------ESE-KLANGDA  352 (454)
T ss_pred             hCCEEEEEEeCCCCC--chhhHHHHH---hcccCCCEEEEEechhccccccc-----------------chh-hccCCCc
Confidence            899999999999862  222222333   22347999999999999874320                 011 1122247


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        156 YLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++.+|+++++|++.+.+.|.+.+...
T Consensus       353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         353 IISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             eEEEEecCccCHHHHHHHHHHHHhhc
Confidence            89999999999999999999888776

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=4.6e-22  Score=148.13  Aligned_cols=152  Identities=20%  Similarity=0.187  Sum_probs=111.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc---------ccccccCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD---------RLRPLSYPD   76 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~   76 (192)
                      ..|+++|.||+|||||+|+|.+...+.....++.++....-.....+..+.++||+|.+...         .+....+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            67999999999999999999999887766666655554332333344569999999966432         223345678


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      ||++|||+|...+  +...++.+...+++.  ++|+++|+||+|....                .....+|. .++.-.+
T Consensus        84 ADvilfvVD~~~G--it~~D~~ia~~Lr~~--~kpviLvvNK~D~~~~----------------e~~~~efy-slG~g~~  142 (444)
T COG1160          84 ADVILFVVDGREG--ITPADEEIAKILRRS--KKPVILVVNKIDNLKA----------------EELAYEFY-SLGFGEP  142 (444)
T ss_pred             CCEEEEEEeCCCC--CCHHHHHHHHHHHhc--CCCEEEEEEcccCchh----------------hhhHHHHH-hcCCCCc
Confidence            9999999999875  444445666676643  6999999999996531                12222332 2333468


Q ss_pred             EEeccCCcCCHHHHHHHHHHHH
Q psy14754        157 LECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      +.+||.+|.|+.+|++++.+.+
T Consensus       143 ~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         143 VPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             eEeehhhccCHHHHHHHHHhhc
Confidence            9999999999999999999997

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.87  E-value=1e-20  Score=153.00  Aligned_cols=154  Identities=12%  Similarity=0.167  Sum_probs=110.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc----------cc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP----------LS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~----------~~   73 (192)
                      +.++|+++|++|+|||||+|++.+........+.. +...+...+...+..+.+||+||..++.....          .+
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGv-Tve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGV-TVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCc-eEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            46799999999999999999999876543322222 22233334556677899999999877653211          12


Q ss_pred             --CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754         74 --YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI  151 (192)
Q Consensus        74 --~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (192)
                        .+.+|++++|+|+++.+..  +  ++...+.+.  +.|+++++||+|+.+.            +.. ......+.+.+
T Consensus        81 l~~~~aD~vI~VvDat~ler~--l--~l~~ql~e~--giPvIvVlNK~Dl~~~------------~~i-~id~~~L~~~L  141 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN--L--YLTLQLLEL--GIPCIVALNMLDIAEK------------QNI-RIDIDALSARL  141 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh--H--HHHHHHHHc--CCCEEEEEEchhhhhc------------cCc-HHHHHHHHHHh
Confidence              2478999999999885432  1  344444444  7999999999998642            122 23456677777


Q ss_pred             CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        152 NAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      + .|++++||.+++|++++++.+.+..
T Consensus       142 G-~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        142 G-CPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             C-CCEEEEEeecCCCHHHHHHHHHHhh
Confidence            7 5999999999999999999988765

>KOG1423|consensus

Probab=99.87  E-value=2.9e-21  Score=136.59  Aligned_cols=175  Identities=14%  Similarity=0.143  Sum_probs=117.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc------------ccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD------------RLR   70 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------~~~   70 (192)
                      .+-++|+|+|.||+|||||.|.+.+.+....+....+++....-.+..+...+.++||||.-.-.            ...
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~  149 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP  149 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence            36789999999999999999999999988877666666655555566677899999999932211            112


Q ss_pred             cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc-CCCCCHHHHHHHHH
Q psy14754         71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK-QEPVKPEEGRAMAQ  149 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  149 (192)
                      ...+..+|.+++++|+++....-+  ...+..+..+ ...|-++|.||.|........-.+.... ...+. ....++.+
T Consensus       150 ~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~-~~kl~v~~  225 (379)
T KOG1423|consen  150 RDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA-KLKLEVQE  225 (379)
T ss_pred             HHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccc-hhhhhHHH
Confidence            234568999999999997432222  2344444443 3689999999999876544433322221 12222 11112222


Q ss_pred             HcCCc----------------eEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        150 KINAF----------------AYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       150 ~~~~~----------------~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .+...                .+|.+||++|+||+++.++|...+...
T Consensus       226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            22112                389999999999999999998877654

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.86  E-value=2.5e-21  Score=148.83  Aligned_cols=158  Identities=13%  Similarity=0.110  Sum_probs=100.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc------------------------------cCceeeeeeEEEEECCeEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY------------------------------VPTVFENYVADIEVDSKQV   53 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~   53 (192)
                      ..++|+++|++++|||||+++|+...-....                              ...+.+.......+...+.
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~   84 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY   84 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence            5799999999999999999999853211100                              0111222222234555678


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhh
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNK  133 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  133 (192)
                      .+.+|||||+++|.......+..+|++++|+|+++...+......++...... ...|+++++||+|+......  .+  
T Consensus        85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~--~~--  159 (425)
T PRK12317         85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEK--RY--  159 (425)
T ss_pred             EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHH--HH--
Confidence            89999999998887655566788999999999987322333222333333332 22469999999998652110  00  


Q ss_pred             ccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy14754        134 MKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV  170 (192)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~  170 (192)
                          ....++...+....+    .++++++||++|+|+++.
T Consensus       160 ----~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        160 ----EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             ----HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence                011233334444333    258999999999999873

>KOG1707|consensus

Probab=99.86  E-value=6.4e-22  Score=150.24  Aligned_cols=169  Identities=24%  Similarity=0.423  Sum_probs=130.6

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ....+||+++|+.|+|||||+.+++...+++.. |..-+.........-+.+..+++|++...+-+......++.+|++.
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~V-P~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV-PRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccc-cccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            457899999999999999999999999988763 3333333333344556677999999876665555567789999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      ++|+.+++++++.+..+|++.++..+   .++|+|+|+||.|.......          ........-+.+....-..++
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----------s~e~~~~pim~~f~EiEtcie  154 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----------SDEVNTLPIMIAFAEIETCIE  154 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----------chhHHHHHHHHHhHHHHHHHh
Confidence            99999999999999999999999887   78999999999999875331          011112222223333346799


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhh
Q psy14754        159 CSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |||++-.++.++|....+++..+
T Consensus       155 cSA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  155 CSALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             hhhhhhhhhHhhhhhhhheeecc
Confidence            99999999999999999888765

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.86  E-value=3e-21  Score=148.44  Aligned_cols=159  Identities=14%  Similarity=0.121  Sum_probs=100.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhC--CCCCcc----------------------------cCceeeeeeEEEEECCeE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKD--QFPEVY----------------------------VPTVFENYVADIEVDSKQ   52 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~   52 (192)
                      ...++|+++|+.++|||||+++|+..  ......                            ...+.+.......+....
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            35789999999999999999999862  221100                            000111112223455566


Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhh
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELN  132 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  132 (192)
                      ..+.+||+||+++|.......+..+|++++|+|++++++.......+...+.......|++|++||+|+.....  ... 
T Consensus        85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~--~~~-  161 (426)
T TIGR00483        85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE--EEF-  161 (426)
T ss_pred             eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH--HHH-
Confidence            78999999999888766666678999999999999875322111111111222223457999999999964211  000 


Q ss_pred             hccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy14754        133 KMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~  169 (192)
                           .....+...+.+..+    .++++++||++|.|+++
T Consensus       162 -----~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       162 -----EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             -----HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence                 011234445555543    26899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0076|consensus

Probab=99.86  E-value=3.3e-22  Score=129.93  Aligned_cols=161  Identities=24%  Similarity=0.296  Sum_probs=119.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCC-------CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQF-------PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPD   76 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   76 (192)
                      ..+.|+++|+.+||||||+.++.....       +....++.+-+.-   .++.....+.+||.+|++..+++|..++..
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig---~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG---TIEVCNAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec---ceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence            467899999999999999988755321       1111222222221   233346789999999999999999999999


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH---HHc-
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA---QKI-  151 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-  151 (192)
                      ++++|+++|+++++.++.....+...... ...+.|+++.+||.|+.+.-+              ..+.....   +.. 
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--------------~~El~~~~~~~e~~~  158 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--------------AAELDGVFGLAELIP  158 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--------------HHHHHHHhhhhhhcC
Confidence            99999999999998888887666665544 346999999999999976432              22222221   111 


Q ss_pred             -CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        152 -NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       152 -~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                       ...++.++||.+|+||++...|+.+.+.+.
T Consensus       159 ~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  159 RRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             CccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence             125889999999999999999999988776

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.86  E-value=4.2e-21  Score=132.51  Aligned_cols=150  Identities=19%  Similarity=0.165  Sum_probs=96.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCC------Ccc---------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFP------EVY---------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL   69 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   69 (192)
                      +++|+++|+.++|||||+++|+.....      ..+         .....+.......+..++..+.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            579999999999999999999864110      000         01111122223344556678899999999888777


Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA  148 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (192)
                      ....+..+|++++|+|+..+  .......++..+...  +.| +|+++||+|+.......+         ....+...+.
T Consensus        82 ~~~~~~~~D~~ilVvda~~g--~~~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~---------~~~~~i~~~l  148 (195)
T cd01884          82 MITGAAQMDGAILVVSATDG--PMPQTREHLLLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEMEVRELL  148 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCC--CcHHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHH---------HHHHHHHHHH
Confidence            77788899999999999875  222223344444443  676 789999999863211100         0112333443


Q ss_pred             HHcC----CceEEEeccCCcCCH
Q psy14754        149 QKIN----AFAYLECSAKSKEGV  167 (192)
Q Consensus       149 ~~~~----~~~~~~~Sa~~~~gi  167 (192)
                      ...+    .++++++||++|.|+
T Consensus       149 ~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         149 SKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHhcccccCCeEEEeeCccccCC
Confidence            3332    368999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.86  E-value=1.4e-20  Score=148.62  Aligned_cols=170  Identities=21%  Similarity=0.263  Sum_probs=105.1

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccC----ceeeeeeEEEEE----CCeE-----E-----EEEEEeCCC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP----TVFENYVADIEV----DSKQ-----V-----ELALWDTAG   62 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~----~~~~-----~-----~~~l~D~~g   62 (192)
                      |..++..|+++|++++|||||+++|.+.........    +.+.... ....    .+..     .     .+.+|||||
T Consensus         2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG   80 (586)
T PRK04004          2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEV-PIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG   80 (586)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeec-cccccccccceeccccccccccCCEEEEECCC
Confidence            567889999999999999999999987654332221    1111111 0000    0110     1     268999999


Q ss_pred             CCcccccccccCCCCCEEEEEEECCC---hhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchh---hh-----
Q psy14754         63 QEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIK---EL-----  131 (192)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~-----  131 (192)
                      ++.|...+...+..+|++++|+|+++   ++++..+     ..+..  .+.|+++++||+|+........   ..     
T Consensus        81 ~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~  153 (586)
T PRK04004         81 HEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK  153 (586)
T ss_pred             hHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence            99999888878888999999999987   3343333     22332  2799999999999853111000   00     


Q ss_pred             -----------------hhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        132 -----------------NKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       132 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                                       ..+.......+......+..+..+++++||++|+|++++++.+...+
T Consensus       154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                             00000111111111111112346899999999999999999886533

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=7.3e-21  Score=150.64  Aligned_cols=160  Identities=19%  Similarity=0.162  Sum_probs=109.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC--CCCc-----cc------Cc-eeeeeeEE--EEE---CCeEEEEEEEeCCCCCc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ--FPEV-----YV------PT-VFENYVAD--IEV---DSKQVELALWDTAGQED   65 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-----~~------~~-~~~~~~~~--~~~---~~~~~~~~l~D~~g~~~   65 (192)
                      -.+++++|+.++|||||+.+|+...  ....     ..      .. +.+.....  +.+   ++..+.+.+|||||+.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            3489999999999999999998632  1110     00      00 01111111  122   44578999999999999


Q ss_pred             ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy14754         66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR  145 (192)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  145 (192)
                      |...+...++.+|++|+|+|++++...+.. ..|.....   .+.|+++|+||+|+.....              .....
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~~--------------~~v~~  148 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAADP--------------ERVKQ  148 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCcccH--------------HHHHH
Confidence            998888899999999999999986444433 23433332   2789999999999854211              11122


Q ss_pred             HHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        146 AMAQKINA--FAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       146 ~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ++.+.++.  .+++++||++|.|+++++++|.+.+..+.
T Consensus       149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            33333332  24899999999999999999998887654

>KOG0074|consensus

Probab=99.86  E-value=3e-21  Score=121.39  Aligned_cols=164  Identities=20%  Similarity=0.294  Sum_probs=120.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      .+++||+++|..++|||||+.+|.......- .|+.+-+ .+.+.+ .+.+.+.+||++|+...+..|.+++.+.|++|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~GFn-~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNGFN-TKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhc-cccCCcc-eEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            5799999999999999999999987665433 2222222 333333 345789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|.+|...++++.+.+..++... ....|+.|..||.|+..+-...+....++.-.        +  ....+.+-++|+
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~--------l--rdRswhIq~csa  161 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAG--------L--RDRSWHIQECSA  161 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhh--------h--hhceEEeeeCcc
Confidence            999999888888877676666543 35799999999999977533322221111110        0  111267789999


Q ss_pred             CCcCCHHHHHHHHHHHHh
Q psy14754        162 KSKEGVREVFETATRAAL  179 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~  179 (192)
                      ..++|+..-.+|+.....
T Consensus       162 ls~eg~~dg~~wv~sn~~  179 (185)
T KOG0074|consen  162 LSLEGSTDGSDWVQSNPE  179 (185)
T ss_pred             ccccCccCcchhhhcCCC
Confidence            999999998888876544

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=3e-20  Score=122.41  Aligned_cols=158  Identities=20%  Similarity=0.260  Sum_probs=116.0

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcc--------cC---ceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--------VP---TVFENYVADIEVDSKQVELALWDTAGQEDYDRLR   70 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   70 (192)
                      ..++.||+|.|+.++||||++.++.........        ..   ++.....-.+. .+++..+.+++||||++|...|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~-~~~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE-LDEDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE-EcCcceEEEecCCCcHHHHHHH
Confidence            457899999999999999999999987742221        11   11111111111 2234678999999999999999


Q ss_pred             cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      ....+++.++|+++|.+.+..+ +. ..++..+....+ .|++|++||.|+....              +.+..+++...
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~--------------ppe~i~e~l~~  148 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL--------------PPEKIREALKL  148 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC--------------CHHHHHHHHHh
Confidence            9999999999999999998777 32 355555554422 9999999999998743              34445444433


Q ss_pred             c-CCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        151 I-NAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       151 ~-~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      - -..|+++.+|.+++|..+.++.+..+
T Consensus       149 ~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         149 ELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccCCCceeeeecccchhHHHHHHHHHhh
Confidence            3 24799999999999999999988776

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.85  E-value=1.6e-21  Score=136.45  Aligned_cols=153  Identities=16%  Similarity=0.121  Sum_probs=93.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcc-c-----------------------------CceeeeeeEEEEECCeEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVY-V-----------------------------PTVFENYVADIEVDSKQVELA   56 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-~-----------------------------~~~~~~~~~~~~~~~~~~~~~   56 (192)
                      ||+++|++|+|||||+++|+...-.... .                             ....+.......+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999764321110 0                             011111111223344556889


Q ss_pred             EEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccC
Q psy14754         57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQ  136 (192)
Q Consensus        57 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  136 (192)
                      +|||||+.+|.......++.+|++|+|+|++++..  ............. ...++|+|+||+|+......  ...    
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~~~~~~-~~~~iIvviNK~D~~~~~~~--~~~----  151 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL--EQTRRHSYILSLL-GIRHVVVAVNKMDLVDYSEE--VFE----  151 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc--HhHHHHHHHHHHc-CCCcEEEEEEchhcccCCHH--HHH----
Confidence            99999998876666667789999999999987521  1111222223222 12457889999998642110  000    


Q ss_pred             CCCCHHHHHHHHHHcC--CceEEEeccCCcCCHHHH
Q psy14754        137 EPVKPEEGRAMAQKIN--AFAYLECSAKSKEGVREV  170 (192)
Q Consensus       137 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~  170 (192)
                        ....+...+...++  ..+++++||+++.|+++.
T Consensus       152 --~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         152 --EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             --HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence              01123344444444  246899999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG3883|consensus

Probab=99.85  E-value=9e-20  Score=116.29  Aligned_cols=166  Identities=24%  Similarity=0.336  Sum_probs=131.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCc--ccCceeeeeeEEEEECC-eEEEEEEEeCCCCCcc-cccccccCCCCCE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYVADIEVDS-KQVELALWDTAGQEDY-DRLRPLSYPDTDV   79 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~-~~~~~~~~~~~~~   79 (192)
                      .-.||+|+|..++|||+++.+++.+.....  ..++..+.+...++.+. -.-.+.++||.|.... ..+-.++++-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            457999999999999999999887765433  36666777766554433 3346899999997766 5566788999999


Q ss_pred             EEEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754         80 ILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL  157 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
                      +++||+..+++||+.+ +.+...+.+..  +.+|+++++||.|+.+            ++.+....++.|++.-. +.++
T Consensus        88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~------------p~~vd~d~A~~Wa~rEk-vkl~  153 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAE------------PREVDMDVAQIWAKREK-VKLW  153 (198)
T ss_pred             EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhccc------------chhcCHHHHHHHHhhhh-eeEE
Confidence            9999999999999988 35666665533  4789999999999986            45666777777776655 6899


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        158 ECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ++++.+...+-+-|-.+...+.....
T Consensus       154 eVta~dR~sL~epf~~l~~rl~~pqs  179 (198)
T KOG3883|consen  154 EVTAMDRPSLYEPFTYLASRLHQPQS  179 (198)
T ss_pred             EEEeccchhhhhHHHHHHHhccCCcc
Confidence            99999999999999999998877654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=1.6e-20  Score=148.60  Aligned_cols=145  Identities=13%  Similarity=0.190  Sum_probs=100.7

Q ss_pred             cCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCccccc------cccc--CCCCCEEEE
Q psy14754         12 GDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRL------RPLS--YPDTDVILM   82 (192)
Q Consensus        12 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~--~~~~~~~i~   82 (192)
                      |++|+|||||+|++.+..+.....++.+.. ....+..+  +..+.+|||||+.++...      ...+  .+.+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~--~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ--GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC--CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            899999999999999887644333333322 22233333  346899999998876553      2222  247899999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+|.++.+..    ..+...+.+.  +.|+++++||+|+.+.            +... .+.+.+.+.++ .+++++||+
T Consensus        79 VvDat~ler~----l~l~~ql~~~--~~PiIIVlNK~Dl~~~------------~~i~-~d~~~L~~~lg-~pvv~tSA~  138 (591)
T TIGR00437        79 VVDASNLERN----LYLTLQLLEL--GIPMILALNLVDEAEK------------KGIR-IDEEKLEERLG-VPVVPTSAT  138 (591)
T ss_pred             EecCCcchhh----HHHHHHHHhc--CCCEEEEEehhHHHHh------------CCCh-hhHHHHHHHcC-CCEEEEECC
Confidence            9999875321    1222233332  7999999999998652            1222 33566777777 599999999


Q ss_pred             CcCCHHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRAA  178 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~  178 (192)
                      +|+|++++++.+.+..
T Consensus       139 tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       139 EGRGIERLKDAIRKAI  154 (591)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.85  E-value=3.9e-20  Score=131.24  Aligned_cols=151  Identities=20%  Similarity=0.147  Sum_probs=97.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccc-------cccccCCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDR-------LRPLSYPDTD   78 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~   78 (192)
                      +|+++|++|+|||||+++|.+........+.++ ....-.+.+  .+..+++||+||......       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE--CCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764332222222 111112223  456899999999754321       2234678999


Q ss_pred             EEEEEEECCChhh-hhchhhh----------------------------------------hHHHH--------------
Q psy14754         79 VILMCFSIDSPDS-LENIPEK----------------------------------------WTPEV--------------  103 (192)
Q Consensus        79 ~~i~v~d~~~~~~-~~~~~~~----------------------------------------~~~~~--------------  103 (192)
                      ++++|+|+++++. ...+.+.                                        ....+              
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            9999999987642 2211100                                        00111              


Q ss_pred             -----------hhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHH
Q psy14754        104 -----------KHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE  172 (192)
Q Consensus       104 -----------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  172 (192)
                                 .......|+++|+||+|+..                 .++...+++.   .+++++||+++.|++++++
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~  219 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----------------IEELDLLARQ---PNSVVISAEKGLNLDELKE  219 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHH
Confidence                       11112369999999999854                 2223334332   3688999999999999999


Q ss_pred             HHHHHHh
Q psy14754        173 TATRAAL  179 (192)
Q Consensus       173 ~i~~~~~  179 (192)
                      .+.+.+-
T Consensus       220 ~i~~~L~  226 (233)
T cd01896         220 RIWDKLG  226 (233)
T ss_pred             HHHHHhC
Confidence            9988653

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK10218 GTP-binding protein; Provisional

Probab=99.85  E-value=2.7e-20  Score=146.95  Aligned_cols=165  Identities=13%  Similarity=0.114  Sum_probs=113.3

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhh--CCCCCccc-------------CceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSK--DQFPEVYV-------------PTVFENYVADIEVDSKQVELALWDTAGQEDY   66 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   66 (192)
                      -..-.+|+++|+.++|||||+++|+.  +.+.....             ....+.......+...+..+.+|||||+.+|
T Consensus         2 ~~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df   81 (607)
T PRK10218          2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF   81 (607)
T ss_pred             CCCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh
Confidence            34456899999999999999999997  33322110             1111222333455667789999999999999


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      ...+...++.+|++|+|+|+.+....+.  ..++......  +.|.++++||+|+........           ..+...
T Consensus        82 ~~~v~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~~--gip~IVviNKiD~~~a~~~~v-----------l~ei~~  146 (607)
T PRK10218         82 GGEVERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFAY--GLKPIVVINKVDRPGARPDWV-----------VDQVFD  146 (607)
T ss_pred             HHHHHHHHHhCCEEEEEEecccCccHHH--HHHHHHHHHc--CCCEEEEEECcCCCCCchhHH-----------HHHHHH
Confidence            9999999999999999999987532222  2333333333  789999999999875432110           011111


Q ss_pred             HH-------HHcCCceEEEeccCCcC----------CHHHHHHHHHHHHhhhc
Q psy14754        147 MA-------QKINAFAYLECSAKSKE----------GVREVFETATRAALQVK  182 (192)
Q Consensus       147 ~~-------~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~~~~  182 (192)
                      +.       .+.. +|++.+||++|.          |+..+++.|...+..+.
T Consensus       147 l~~~l~~~~~~~~-~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        147 LFVNLDATDEQLD-FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             HHhccCccccccC-CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            11       1122 689999999998          68999999999887664

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.85  E-value=1.5e-20  Score=121.13  Aligned_cols=136  Identities=22%  Similarity=0.292  Sum_probs=94.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC----CcccccccccCCCCCEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ----EDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~~~~i~   82 (192)
                      ||+++|+.|||||||+++|.+........+..        .+.     =.++||||.    ..+..-......++|.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i--------~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAI--------EYY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCcccee--------Eec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            89999999999999999999876533211111        121     134799993    2233333344568999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      +.|++++.+.-.  ..+...+     +.|+|-|+||+|+..+.             ...+...++.+.-+.-++|++|+.
T Consensus        70 l~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~-------------~~i~~a~~~L~~aG~~~if~vS~~  129 (143)
T PF10662_consen   70 LQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDD-------------ANIERAKKWLKNAGVKEIFEVSAV  129 (143)
T ss_pred             EecCCCCCccCC--chhhccc-----CCCEEEEEECccCccch-------------hhHHHHHHHHHHcCCCCeEEEECC
Confidence            999998743221  1233222     58999999999998421             234455566666666678999999


Q ss_pred             CcCCHHHHHHHHH
Q psy14754        163 SKEGVREVFETAT  175 (192)
Q Consensus       163 ~~~gi~~~~~~i~  175 (192)
                      +|+|+++|.++|.
T Consensus       130 ~~eGi~eL~~~L~  142 (143)
T PF10662_consen  130 TGEGIEELKDYLE  142 (143)
T ss_pred             CCcCHHHHHHHHh
Confidence            9999999999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.84  E-value=1.2e-20  Score=149.00  Aligned_cols=160  Identities=16%  Similarity=0.154  Sum_probs=109.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC--CCCCccc-------------CceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD--QFPEVYV-------------PTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP   71 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   71 (192)
                      +|+++|+.++|||||+++|+..  .+.....             ....+.......+...+..+.+|||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  2222110             001112222234455668899999999999988888


Q ss_pred             ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH---
Q psy14754         72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA---  148 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  148 (192)
                      ..++.+|++++|+|+.+..  ......|+..+...  +.|+++++||+|+.......          + ..+...+.   
T Consensus        83 ~~l~~aD~alLVVDa~~G~--~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~----------v-~~ei~~l~~~~  147 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP--MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDE----------V-VDEVFDLFAEL  147 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC--cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHH----------H-HHHHHHHHHhh
Confidence            8899999999999998742  22223455555544  78999999999986532110          0 01111111   


Q ss_pred             ----HHcCCceEEEeccCCcC----------CHHHHHHHHHHHHhhhc
Q psy14754        149 ----QKINAFAYLECSAKSKE----------GVREVFETATRAALQVK  182 (192)
Q Consensus       149 ----~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~~~~  182 (192)
                          +++. +|++++||++|.          |++.+|+.|.+.+....
T Consensus       148 g~~~e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       148 GADDEQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             cccccccc-CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence                1223 689999999995          89999999999887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.84  E-value=3.2e-20  Score=130.73  Aligned_cols=166  Identities=15%  Similarity=0.185  Sum_probs=100.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCcee--------------eeeeE-EE----------------------EEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--------------ENYVA-DI----------------------EVD   49 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------------~~~~~-~~----------------------~~~   49 (192)
                      ||+++|+.++|||||+++|..+.+.........              ..... .+                      .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999998666442211100              00000 00                      011


Q ss_pred             CeEEEEEEEeCCCCCcccccccccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754         50 SKQVELALWDTAGQEDYDRLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus        50 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                      ..+..+.++|+||++.|.......+.  .+|++++|+|+..+.  ......++..+...  +.|+++++||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALAL--NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHHc--CCCEEEEEECccccCHHHH
Confidence            22457899999999888665554443  689999999988753  33333555555554  7899999999998653222


Q ss_pred             hhhhhhccCCC------------CCHHHHHHHHH---HcCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754        128 IKELNKMKQEP------------VKPEEGRAMAQ---KINAFAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus       128 ~~~~~~~~~~~------------~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      ......+....            .+.+.....+.   .....|+|.+||.+|+|+++++..|..
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            11111110000            00000000111   112358999999999999999988753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12736 elongation factor Tu; Reviewed

Probab=99.83  E-value=3.9e-20  Score=140.67  Aligned_cols=167  Identities=16%  Similarity=0.160  Sum_probs=107.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCC------------c---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE------------V---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      ...++|+++|+.++|||||+++|++.....            .   ......+.......+......+.++||||+++|.
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence            357899999999999999999998632110            0   0011111222233444556678999999999887


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      ......+..+|++++|+|+.++..  .....++..+...  +.| +|+++||+|+.......+         ....+...
T Consensus        90 ~~~~~~~~~~d~~llVvd~~~g~~--~~t~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~---------~i~~~i~~  156 (394)
T PRK12736         90 KNMITGAAQMDGAILVVAATDGPM--PQTREHILLARQV--GVPYLVVFLNKVDLVDDEELLE---------LVEMEVRE  156 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCc--hhHHHHHHHHHHc--CCCEEEEEEEecCCcchHHHHH---------HHHHHHHH
Confidence            766667778999999999987422  2222344444443  678 678999999864211100         01123334


Q ss_pred             HHHHcC----CceEEEeccCCcC--------CHHHHHHHHHHHHhhhc
Q psy14754        147 MAQKIN----AFAYLECSAKSKE--------GVREVFETATRAALQVK  182 (192)
Q Consensus       147 ~~~~~~----~~~~~~~Sa~~~~--------gi~~~~~~i~~~~~~~~  182 (192)
                      +....+    ..|++++||+++.        ++.++++.+...+....
T Consensus       157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~  204 (394)
T PRK12736        157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPE  204 (394)
T ss_pred             HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCC
Confidence            433333    2589999999983        68889988888765443

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.83  E-value=4.7e-20  Score=146.28  Aligned_cols=160  Identities=14%  Similarity=0.097  Sum_probs=101.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC---CCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ---FPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      -|+++|+.++|||||+++|.+..   +.+......+............+..+.+||+||+++|.......+..+|++++|
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV   81 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV   81 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence            48899999999999999998643   222221222211111111111234589999999999877777778899999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC--CceEEEec
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN--AFAYLECS  160 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~S  160 (192)
                      +|+.++-  .......+..+...  +.| ++||+||+|+.+.... .         ...++..++....+  ..+++++|
T Consensus        82 Vda~eg~--~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~-~---------~v~~ei~~~l~~~~~~~~~ii~VS  147 (614)
T PRK10512         82 VACDDGV--MAQTREHLAILQLT--GNPMLTVALTKADRVDEARI-A---------EVRRQVKAVLREYGFAEAKLFVTA  147 (614)
T ss_pred             EECCCCC--cHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHH-H---------HHHHHHHHHHHhcCCCCCcEEEEe
Confidence            9998742  11111223333332  456 5799999998642110 0         01223334433332  36899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhh
Q psy14754        161 AKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~  180 (192)
                      |++|+|++++++.|......
T Consensus       148 A~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        148 ATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             CCCCCCCHHHHHHHHHhhcc
Confidence            99999999999999876544

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.83  E-value=1.5e-19  Score=130.58  Aligned_cols=114  Identities=20%  Similarity=0.067  Sum_probs=77.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCC-----cc------------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPE-----VY------------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL   69 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   69 (192)
                      +|+++|++++|||||+++|+...-..     ..            .....+.......+...+..+.+|||||+.+|...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            58999999999999999997421100     00            00011111112233345678999999999888888


Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      +...++.+|++++|+|+.+..  +.....++..+...  ++|+++++||+|+.+.
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~--~~~t~~~~~~~~~~--~~p~ivviNK~D~~~a  131 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGV--EPQTETVWRQADRY--NVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCC--CHHHHHHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            888899999999999998753  22223444444443  7899999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04169 RF3 RF3 subfamily

Probab=99.83  E-value=1.3e-19  Score=130.85  Aligned_cols=116  Identities=17%  Similarity=0.133  Sum_probs=79.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCccc---------C-c-----------eeeeeeEEEEECCeEEEEEEEeCCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV---------P-T-----------VFENYVADIEVDSKQVELALWDTAGQE   64 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------~-~-----------~~~~~~~~~~~~~~~~~~~l~D~~g~~   64 (192)
                      .+|+++|++|+|||||+++|+...-.....         . +           ..+.......+...+..+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            579999999999999999998532110000         0 0           011112223456677899999999999


Q ss_pred             cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        65 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      +|.......++.+|++|+|+|+++...  ...+.++......  +.|+++++||+|+....
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~--~~~~~i~~~~~~~--~~P~iivvNK~D~~~a~  139 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVE--PQTRKLFEVCRLR--GIPIITFINKLDREGRD  139 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCcc--HHHHHHHHHHHhc--CCCEEEEEECCccCCCC
Confidence            887766677889999999999987532  2223444444433  79999999999986543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.83  E-value=7.3e-20  Score=129.04  Aligned_cols=154  Identities=12%  Similarity=0.070  Sum_probs=92.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCc---------------------------c---cCceeeeeeEEEEECCeEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEV---------------------------Y---VPTVFENYVADIEVDSKQVELA   56 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~~   56 (192)
                      +|+++|++++|||||+.+|+...-...                           .   .....+.......+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999864211000                           0   0011111122233445667899


Q ss_pred             EEeCCCCCcccccccccCCCCCEEEEEEECCChhh-----hh-chhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy14754         57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS-----LE-NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE  130 (192)
Q Consensus        57 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-----~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  130 (192)
                      +|||||+..|...+...+..+|++++|+|+++...     .. ...+.+ ..... ....|+++++||+|+.........
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-LGVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-cCCCeEEEEEEccccccccccHHH
Confidence            99999998877666667788999999999998521     11 111122 22222 224689999999999742110000


Q ss_pred             hhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHH
Q psy14754        131 LNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVR  168 (192)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~  168 (192)
                      ...      ...+...+...++    .++++++||++|+|++
T Consensus       159 ~~~------i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDE------IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHH------HHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            000      0112222233332    2689999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04167 Snu114p Snu114p subfamily

Probab=99.82  E-value=5.6e-20  Score=129.22  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=78.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcc-----------cCc------e-eeeeeE--EEEE---CCeEEEEEEEeCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVY-----------VPT------V-FENYVA--DIEV---DSKQVELALWDTAGQ   63 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~------~-~~~~~~--~~~~---~~~~~~~~l~D~~g~   63 (192)
                      +|+++|+.++|||||+++|+........           ...      . .+....  .+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875433220           000      0 000011  1111   345688999999999


Q ss_pred             CcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      .+|.......+..+|++++|+|+++..+...  +.++......  +.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccC
Confidence            9988777788889999999999987654332  2344443332  69999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.82  E-value=7.1e-20  Score=139.75  Aligned_cols=166  Identities=14%  Similarity=0.114  Sum_probs=103.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccC-----ceeee-----------------eeEEEEECC------eEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-----TVFEN-----------------YVADIEVDS------KQVEL   55 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----~~~~~-----------------~~~~~~~~~------~~~~~   55 (192)
                      .+++|+++|++++|||||+++|.+.........     +....                 +......+.      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            578999999999999999999975322110000     00000                 000000011      14679


Q ss_pred             EEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc
Q psy14754         56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK  135 (192)
Q Consensus        56 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  135 (192)
                      .+||+||+++|...+......+|++++|+|++++....... ..+..+... ...|+++++||+|+.........     
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~-----  155 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHLMALEII-GIKNIVIVQNKIDLVSKEKALEN-----  155 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHHHHHHHc-CCCeEEEEEEccccCCHHHHHHH-----
Confidence            99999999999888777778899999999999753111111 222233222 23579999999998753211111     


Q ss_pred             CCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        136 QEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       136 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                           .++...+....  ..++++++||++++|+++++++|...+...
T Consensus       156 -----~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~  198 (406)
T TIGR03680       156 -----YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP  198 (406)
T ss_pred             -----HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence                 11222222221  236899999999999999999999876543

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.82  E-value=1.3e-19  Score=125.74  Aligned_cols=173  Identities=14%  Similarity=0.136  Sum_probs=103.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEE-EEEC-CeEEEEEEEeCCCCCccccc-----ccccCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVAD-IEVD-SKQVELALWDTAGQEDYDRL-----RPLSYPD   76 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~l~D~~g~~~~~~~-----~~~~~~~   76 (192)
                      ++||+++|++|+|||||+|+|++.........+... ..... ..+. .....+.+||+||.......     ....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            579999999999999999999986554322221111 00000 0111 11236899999996532211     1223567


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH----HH--
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA----QK--  150 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--  150 (192)
                      +|+++++.+    ..+......|+..+...  +.|+++|+||+|+....+........... ...++.++.+    ..  
T Consensus        81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~-~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNRE-QVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHH-HHHHHHHHHHHHHHHHcC
Confidence            898888743    23555556777777776  78999999999996543311100000000 0011111111    11  


Q ss_pred             cCCceEEEeccC--CcCCHHHHHHHHHHHHhhhccc
Q psy14754        151 INAFAYLECSAK--SKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       151 ~~~~~~~~~Sa~--~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      ....++|.+|+.  .+.|+..+.+.+...+.+.++.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence            122478899998  5789999999999998876653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.82  E-value=1e-19  Score=123.21  Aligned_cols=154  Identities=12%  Similarity=0.086  Sum_probs=93.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcc----------cccccccC-
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDY----------DRLRPLSY-   74 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~-   74 (192)
                      .|+++|++|+|||||++.+.+........++..... ......+.   .+.+||+||....          ......++ 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996554433333322211 11222222   8899999995332          22222222 


Q ss_pred             --CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH-Hc
Q psy14754         75 --PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ-KI  151 (192)
Q Consensus        75 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  151 (192)
                        ...+++++++|.....+...  ......+...  +.|+++++||+|+......          ...........+ ..
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~l~~~~  143 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEEL--GIPFLVVLTKADKLKKSEL----------AKALKEIKKELKLFE  143 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHHc--CCCEEEEEEchhcCChHHH----------HHHHHHHHHHHHhcc
Confidence              34678899999876522111  2233344433  6899999999998642210          001111111222 23


Q ss_pred             CCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        152 NAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      ...+++++|++++.|+++++++|.+.
T Consensus       144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         144 IDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHh
Confidence            44689999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.82  E-value=1.8e-19  Score=137.07  Aligned_cols=163  Identities=17%  Similarity=0.138  Sum_probs=104.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCC------------Cc-c--cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFP------------EV-Y--VPTVFENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~~-~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      ..++|+++|++++|||||+++|++....            +. .  .....+.......+...+..+.++||||+.+|..
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~   90 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK   90 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence            5789999999999999999999862110            00 0  0111111122233444556789999999988877


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEE-EEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM  147 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (192)
                      .....+..+|++++|+|+.+...  .....++..+...  +.|.+ +++||+|+.+.....         .....+...+
T Consensus        91 ~~~~~~~~aD~~llVvda~~g~~--~qt~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~---------~~~~~ei~~~  157 (396)
T PRK12735         91 NMITGAAQMDGAILVVSAADGPM--PQTREHILLARQV--GVPYIVVFLNKCDMVDDEELL---------ELVEMEVREL  157 (396)
T ss_pred             HHHhhhccCCEEEEEEECCCCCc--hhHHHHHHHHHHc--CCCeEEEEEEecCCcchHHHH---------HHHHHHHHHH
Confidence            66677789999999999987422  1112333444433  68865 579999986421100         0112234444


Q ss_pred             HHHcC----CceEEEeccCCcC----------CHHHHHHHHHHHHh
Q psy14754        148 AQKIN----AFAYLECSAKSKE----------GVREVFETATRAAL  179 (192)
Q Consensus       148 ~~~~~----~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~  179 (192)
                      ...++    .++++++||+++.          ++.++++.|...+.
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            44443    2689999999984          68888888887654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.81  E-value=1.3e-19  Score=137.98  Aligned_cols=162  Identities=16%  Similarity=0.147  Sum_probs=100.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCC------------CCcc---cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQF------------PEVY---VPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      ...++|+++|+.++|||||+++|++...            .+..   .....+.......++..+..+.+|||||+++|.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~   89 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence            4678999999999999999999974310            0000   001112222333455566789999999999887


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEE-EEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      .........+|++++|+|+.++-..+.  ..++..+...  +.|.+ +++||+|+.+.....+         ....+...
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~~~~~i~~  156 (394)
T TIGR00485        90 KNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEVRE  156 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEecccCCHHHHHH---------HHHHHHHH
Confidence            666666678899999999987422221  2333334333  67765 6899999865211100         01223444


Q ss_pred             HHHHcCC----ceEEEeccCCcC--------CHHHHHHHHHHH
Q psy14754        147 MAQKINA----FAYLECSAKSKE--------GVREVFETATRA  177 (192)
Q Consensus       147 ~~~~~~~----~~~~~~Sa~~~~--------gi~~~~~~i~~~  177 (192)
                      +...++.    +|++++||+++.        ++.++++.+...
T Consensus       157 ~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~  199 (394)
T TIGR00485       157 LLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY  199 (394)
T ss_pred             HHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence            5554432    689999999874        344555555443

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1489|consensus

Probab=99.81  E-value=2.5e-19  Score=127.46  Aligned_cols=155  Identities=16%  Similarity=0.165  Sum_probs=111.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc-------cccCCCCCE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR-------PLSYPDTDV   79 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~~~~~~   79 (192)
                      .|.++|-||+|||||++++...+......+.++-..........+...+.+-|+||.-.-.+..       -..++.++.
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~  277 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG  277 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence            4789999999999999999998887766666665544333333344459999999943322221       123567999


Q ss_pred             EEEEEECCCh---hhhhchhhhhHHHHh---hhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         80 ILMCFSIDSP---DSLENIPEKWTPEVK---HFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        80 ~i~v~d~~~~---~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      .+||+|++..   ..|+.+. .+...+.   +...+.|.+||+||+|+.+.               ......++.+.++.
T Consensus       278 l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKiD~~ea---------------e~~~l~~L~~~lq~  341 (366)
T KOG1489|consen  278 LLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKIDLPEA---------------EKNLLSSLAKRLQN  341 (366)
T ss_pred             EEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEeccCchhH---------------HHHHHHHHHHHcCC
Confidence            9999999998   6666664 3333333   34458999999999998531               12224677778776


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        154 FAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      ..++++||+.++|+.++++.+.+.
T Consensus       342 ~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  342 PHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             CcEEEeeeccccchHHHHHHHhhc
Confidence            459999999999999999987653

>KOG0096|consensus

Probab=99.81  E-value=3.1e-19  Score=117.82  Aligned_cols=162  Identities=29%  Similarity=0.434  Sum_probs=131.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCe-EEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSK-QVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      -++++++|..|.||||++++.+.+.+...+.++.+-.....+...+. .+++.+|||.|++.+......++-++.++|++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            57899999999999999999999999999888877555443333443 49999999999999998888888889999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      +|++.+-.+.+.. .|...+.+-+.++|+++++||.|......              ..+...+-+..+ +.++++||+.
T Consensus        90 FdVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r~~--------------k~k~v~~~rkkn-l~y~~iSaks  153 (216)
T KOG0096|consen   90 FDVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKARKV--------------KAKPVSFHRKKN-LQYYEISAKS  153 (216)
T ss_pred             eeeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceecccccc--------------ccccceeeeccc-ceeEEeeccc
Confidence            9999998888885 89988888888999999999999865321              111222333333 6899999999


Q ss_pred             cCCHHHHHHHHHHHHhhhc
Q psy14754        164 KEGVREVFETATRAALQVK  182 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~~~  182 (192)
                      +.|.+.-|-|+.+++....
T Consensus       154 n~NfekPFl~LarKl~G~p  172 (216)
T KOG0096|consen  154 NYNFERPFLWLARKLTGDP  172 (216)
T ss_pred             ccccccchHHHhhhhcCCC
Confidence            9999999999998887653

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=4.2e-19  Score=119.55  Aligned_cols=161  Identities=16%  Similarity=0.195  Sum_probs=104.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeeeeEEEEECCeEEEEEEEeCCC----------CCccccccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDSKQVELALWDTAG----------QEDYDRLRP   71 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~   71 (192)
                      ....-|+++|.+|+|||||+|+|++.+- +..+..++.+....-+.++..   +.++|.||          ++.+.....
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            3456899999999999999999999763 333333333333333344433   88999999          122222222


Q ss_pred             ccCC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HH
Q psy14754         72 LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AM  147 (192)
Q Consensus        72 ~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~  147 (192)
                      .+++   +..++++++|+..+  ....+...++.+...  +.|++|++||+|.....+....+          .... .+
T Consensus        99 ~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l----------~~v~~~l  164 (200)
T COG0218          99 EYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLEL--GIPVIVVLTKADKLKKSERNKQL----------NKVAEEL  164 (200)
T ss_pred             HHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHHc--CCCeEEEEEccccCChhHHHHHH----------HHHHHHh
Confidence            2332   35778889998875  455555677777766  89999999999988743321111          1111 11


Q ss_pred             HHHcCCc-eEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        148 AQKINAF-AYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       148 ~~~~~~~-~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ....... -++..|+..+.|++++...|...+..
T Consensus       165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             cCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            1112211 17789999999999999999887654

>CHL00071 tufA elongation factor Tu

Probab=99.81  E-value=2e-19  Score=137.43  Aligned_cols=150  Identities=18%  Similarity=0.150  Sum_probs=96.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC---------------cccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---------------VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      ..++|+++|++++|||||+++|++..-..               .......+.......+..++..+.++||||+.+|..
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~   90 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK   90 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence            57899999999999999999998742110               000011111122233445566789999999988877


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM  147 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (192)
                      .....+..+|++++|+|+...  +......++..+...  +.| +|+++||+|+.......+         ....+...+
T Consensus        91 ~~~~~~~~~D~~ilVvda~~g--~~~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~---------~~~~~l~~~  157 (409)
T CHL00071         91 NMITGAAQMDGAILVVSAADG--PMPQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLE---------LVELEVREL  157 (409)
T ss_pred             HHHHHHHhCCEEEEEEECCCC--CcHHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHH---------HHHHHHHHH
Confidence            777777899999999999865  222223344444443  678 778999999975321111         012233344


Q ss_pred             HHHcC----CceEEEeccCCcCC
Q psy14754        148 AQKIN----AFAYLECSAKSKEG  166 (192)
Q Consensus       148 ~~~~~----~~~~~~~Sa~~~~g  166 (192)
                      ....+    ..|++++||.+|.+
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        158 LSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHhCCCCCcceEEEcchhhccc
Confidence            44332    26899999998863

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=4.5e-19  Score=135.33  Aligned_cols=166  Identities=16%  Similarity=0.132  Sum_probs=101.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc---c--Cceeeeee-EEE----------EE------CC------eEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY---V--PTVFENYV-ADI----------EV------DS------KQVEL   55 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~--~~~~~~~~-~~~----------~~------~~------~~~~~   55 (192)
                      .+++|+++|+.++|||||+.+|.+.......   .  .+....+. ...          .+      +.      ....+
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            5789999999999999999999653211111   0  01110000 000          00      00      13578


Q ss_pred             EEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc
Q psy14754         56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK  135 (192)
Q Consensus        56 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  135 (192)
                      .+|||||+++|..........+|++++|+|++++.......+.+ ..+... ...|+++|+||+|+.+......      
T Consensus        88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~------  159 (411)
T PRK04000         88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII-GIKNIVIVQNKIDLVSKERALE------  159 (411)
T ss_pred             EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc-CCCcEEEEEEeeccccchhHHH------
Confidence            99999999888766555666789999999999642111111122 222222 1347899999999975321110      


Q ss_pred             CCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        136 QEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       136 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                          ..++...+....  ...+++++||++++|++++++.|...+...
T Consensus       160 ----~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~  203 (411)
T PRK04000        160 ----NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP  203 (411)
T ss_pred             ----HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence                112222333221  236899999999999999999999877544

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.80  E-value=3.7e-19  Score=138.96  Aligned_cols=118  Identities=19%  Similarity=0.152  Sum_probs=81.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCC--Cccc-------C-c-----------eeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFP--EVYV-------P-T-----------VFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~-------~-~-----------~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      ...+|+|+|++++|||||+++|+...-.  ....       . +           ..+.......+...+..+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            4569999999999999999999742110  0000       0 0           0011112234455678899999999


Q ss_pred             CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      +.+|.......++.+|++|+|+|+++.-  +...+.++......  +.|+++++||+|+....
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~~--~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGV--EPQTRKLMEVCRLR--DTPIFTFINKLDRDGRE  147 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCC--CHHHHHHHHHHHhc--CCCEEEEEECCcccccC
Confidence            9998877777889999999999998752  22223444444433  89999999999987644

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.80  E-value=1.2e-18  Score=126.57  Aligned_cols=114  Identities=20%  Similarity=0.159  Sum_probs=76.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCccc----C-c------------eeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYV----P-T------------VFENYVADIEVDSKQVELALWDTAGQEDYDRL   69 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~-~------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   69 (192)
                      +|+++|++|+|||||+++|+.........    . +            ..+.......+...+..+.+|||||+.+|...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997533111000    0 0            00001111223334568899999999888777


Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      +...++.+|++++|+|+++.......  ..+..+...  +.|.++++||+|....
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCC
Confidence            77888999999999999886433322  222333333  7899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=2.8e-18  Score=130.14  Aligned_cols=169  Identities=21%  Similarity=0.232  Sum_probs=115.6

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECC-eEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDS-KQVELALWDTAGQEDYDRLRPLSYPDTDV   79 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~   79 (192)
                      ..++.=|.++|+...|||||+.++-+...........+... ...+..+. ..-.+.++|||||+.|..++..-..-+|+
T Consensus         2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI   81 (509)
T COG0532           2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI   81 (509)
T ss_pred             CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence            34667799999999999999999998877665332222211 12222221 34578999999999999999888889999


Q ss_pred             EEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc-CCceEEE
Q psy14754         80 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI-NAFAYLE  158 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  158 (192)
                      ++||+++.+.---+..  .-+...+.  .+.|++|++||+|..+.++.....+.......        .+.| +...+++
T Consensus        82 aILVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~--------~E~~gg~v~~Vp  149 (509)
T COG0532          82 AILVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEANPDKVKQELQEYGLV--------PEEWGGDVIFVP  149 (509)
T ss_pred             EEEEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCCHHHHHHHHHHcCCC--------HhhcCCceEEEE
Confidence            9999999985222221  11122222  38999999999999876543222221111111        1222 2367999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +||++|+|+++|+..+.-.....+
T Consensus       150 vSA~tg~Gi~eLL~~ill~aev~e  173 (509)
T COG0532         150 VSAKTGEGIDELLELILLLAEVLE  173 (509)
T ss_pred             eeccCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999887766654

>PRK00049 elongation factor Tu; Reviewed

Probab=99.79  E-value=1.6e-18  Score=131.96  Aligned_cols=164  Identities=17%  Similarity=0.140  Sum_probs=104.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCC------c---------ccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE------V---------YVPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      ...++|+++|+.++|||||+++|++.....      .         ......+.......+...+..+.++||||+.+|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            457899999999999999999998732110      0         0011111222233444456678999999998887


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEE-EEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      ......+..+|++++|+|+..+-  ......++..+...  +.|.+ +++||+|+.......+.         ...+...
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~---------~~~~i~~  156 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLEL---------VEMEVRE  156 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCC--chHHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHH---------HHHHHHH
Confidence            76667788999999999998752  22223444455444  68976 68999998642110000         1112333


Q ss_pred             HHHHc----CCceEEEeccCCcC----------CHHHHHHHHHHHHh
Q psy14754        147 MAQKI----NAFAYLECSAKSKE----------GVREVFETATRAAL  179 (192)
Q Consensus       147 ~~~~~----~~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~  179 (192)
                      +....    ...|++++||+++.          |+..+++.|...+.
T Consensus       157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            33332    23689999999875          57788888877654

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.78  E-value=7.9e-18  Score=131.08  Aligned_cols=158  Identities=16%  Similarity=0.131  Sum_probs=109.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc------cccc-C-C
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL------RPLS-Y-P   75 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~-~-~   75 (192)
                      ...+|+++|+||+|||||.|++++......--|..+ ...++-.....+.++++.|+||-.+....      ...+ + .
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvT-VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVT-VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCee-EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            456799999999999999999999876544333322 22333344555556999999995443222      1122 2 3


Q ss_pred             CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      ..|+++.|+|+++.+.--    ++--++.+.  +.|+++++|++|....             .--.-...++.+.++ +|
T Consensus        81 ~~D~ivnVvDAtnLeRnL----yltlQLlE~--g~p~ilaLNm~D~A~~-------------~Gi~ID~~~L~~~LG-vP  140 (653)
T COG0370          81 KPDLIVNVVDATNLERNL----YLTLQLLEL--GIPMILALNMIDEAKK-------------RGIRIDIEKLSKLLG-VP  140 (653)
T ss_pred             CCCEEEEEcccchHHHHH----HHHHHHHHc--CCCeEEEeccHhhHHh-------------cCCcccHHHHHHHhC-CC
Confidence            579999999999864221    222222333  8999999999998762             222344557778888 59


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        156 YLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ++++||++|.|++++++.+.+......
T Consensus       141 Vv~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         141 VVPTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             EEEEEeecCCCHHHHHHHHHHhccccc
Confidence            999999999999999999987655543

>PLN03127 Elongation factor Tu; Provisional

Probab=99.77  E-value=5.4e-18  Score=130.27  Aligned_cols=166  Identities=15%  Similarity=0.123  Sum_probs=103.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhC------CCCCc---------ccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKD------QFPEV---------YVPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      ...++|+++|+.++|||||+++|.+.      .....         ....+.+.......+..++..+.++||||+.+|.
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~  138 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV  138 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence            35789999999999999999999732      10000         0001112222333455566788999999998886


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      ......+..+|++++|+|+.+.-  .......+..+...  +.| +|+++||+|+.+.....+.         ...+..+
T Consensus       139 ~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~---------i~~~i~~  205 (447)
T PLN03127        139 KNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQV--GVPSLVVFLNKVDVVDDEELLEL---------VEMELRE  205 (447)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHH---------HHHHHHH
Confidence            66666667899999999988652  22222344444444  688 5789999998752211100         0112223


Q ss_pred             HHHHc----CCceEEEeccC---CcCC-------HHHHHHHHHHHHhhh
Q psy14754        147 MAQKI----NAFAYLECSAK---SKEG-------VREVFETATRAALQV  181 (192)
Q Consensus       147 ~~~~~----~~~~~~~~Sa~---~~~g-------i~~~~~~i~~~~~~~  181 (192)
                      +...+    ..+|++++|+.   ++.|       +.++++.+...+..+
T Consensus       206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p  254 (447)
T PLN03127        206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP  254 (447)
T ss_pred             HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence            33222    13688888875   4555       788888887766433

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.77  E-value=5.5e-19  Score=123.96  Aligned_cols=168  Identities=17%  Similarity=0.286  Sum_probs=104.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCc-eeeeeeEEEEECCeEEEEEEEeCCCCCcccc-----cccccCCCCCEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-VFENYVADIEVDSKQVELALWDTAGQEDYDR-----LRPLSYPDTDVI   80 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~~~~   80 (192)
                      ||+++|+.+|||||..+.+..+..+.....- .+.............+.+.+||+||+..+..     .....++++.++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            7999999999999999999987655433211 1222222222234567899999999876543     345577899999


Q ss_pred             EEEEECCChh---hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC--Cce
Q psy14754         81 LMCFSIDSPD---SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN--AFA  155 (192)
Q Consensus        81 i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  155 (192)
                      |+|+|+.+.+   .+..+ ...+..+.+..|+..+.|+++|+|+..+..+........      +...+.....+  .+.
T Consensus        81 IyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~------~~i~~~~~~~~~~~~~  153 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQ------QRIRDELEDLGIEDIT  153 (232)
T ss_dssp             EEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHH------HHHHHHHHHTT-TSEE
T ss_pred             EEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHH------HHHHHHhhhccccceE
Confidence            9999998433   22222 234455566778999999999999987555443332211      11222222222  367


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        156 YLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ++.||..+ +.+-+.|..+++.+....
T Consensus       154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  154 FFLTSIWD-ESLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             EEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred             EEeccCcC-cHHHHHHHHHHHHHcccH
Confidence            88898888 589999999999988653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=9.1e-19  Score=122.69  Aligned_cols=175  Identities=17%  Similarity=0.190  Sum_probs=113.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-------ccccccccCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-------YDRLRPLSYPD   76 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~   76 (192)
                      .+++|+++|..|+|||||+|+|+.+.......-..+..........++.-.+.+||+||-.+       ++......+..
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~  117 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPK  117 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhh
Confidence            58899999999999999999999766544432222222221112223335689999999544       45556667888


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhc---cCCCCCH---HHHHHHHHH
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKM---KQEPVKP---EEGRAMAQK  150 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~  150 (192)
                      .|.+++++++.|++  -..++.++..+....-+.++++++|.+|...+..........   ..+....   +...++++.
T Consensus       118 ~DLvL~l~~~~dra--L~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~  195 (296)
T COG3596         118 LDLVLWLIKADDRA--LGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE  195 (296)
T ss_pred             ccEEEEeccCCCcc--ccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999874  333345555554444469999999999998764111100000   0000011   111223333


Q ss_pred             cCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        151 INAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                        .-|++..|...+.|++++...++..+-...
T Consensus       196 --V~pV~~~~~r~~wgl~~l~~ali~~lp~e~  225 (296)
T COG3596         196 --VKPVVAVSGRLPWGLKELVRALITALPVEA  225 (296)
T ss_pred             --cCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence              248888898999999999999998877543

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.77  E-value=2.8e-17  Score=117.59  Aligned_cols=156  Identities=20%  Similarity=0.167  Sum_probs=109.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-------ccccccccCCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-------YDRLRPLSYPDTD   78 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~   78 (192)
                      -+++++|.|++|||||+++|.+........++++...... ...+++..+++.|+||.-.       -.......+++||
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG-~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD  142 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPG-MLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD  142 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccc-eEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence            4799999999999999999999887776666665544333 3567788999999998322       1244556789999


Q ss_pred             EEEEEEECCChhh-hhchhhhh----------------------------------------HHHHh-------------
Q psy14754         79 VILMCFSIDSPDS-LENIPEKW----------------------------------------TPEVK-------------  104 (192)
Q Consensus        79 ~~i~v~d~~~~~~-~~~~~~~~----------------------------------------~~~~~-------------  104 (192)
                      ++++|+|+....+ .+.+.+.+                                        ...++             
T Consensus       143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~  222 (365)
T COG1163         143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE  222 (365)
T ss_pred             EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence            9999999986543 22221100                                        01111             


Q ss_pred             ------------hhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHH
Q psy14754        105 ------------HFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE  172 (192)
Q Consensus       105 ------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  172 (192)
                                  ..-.-+|.++|.||.|+..                 .++...+.+..   ..+.+||..+.|++++.+
T Consensus       223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----------------~e~~~~l~~~~---~~v~isa~~~~nld~L~e  282 (365)
T COG1163         223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----------------LEELERLARKP---NSVPISAKKGINLDELKE  282 (365)
T ss_pred             CCcHHHHHHHHhhcceeeeeEEEEecccccC-----------------HHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence                        1111269999999999866                 22333444433   678899999999999999


Q ss_pred             HHHHHHhhhc
Q psy14754        173 TATRAALQVK  182 (192)
Q Consensus       173 ~i~~~~~~~~  182 (192)
                      .|.+.+--.+
T Consensus       283 ~i~~~L~liR  292 (365)
T COG1163         283 RIWDVLGLIR  292 (365)
T ss_pred             HHHHhhCeEE
Confidence            9999876554

>PLN03126 Elongation factor Tu; Provisional

Probab=99.76  E-value=4.7e-18  Score=131.26  Aligned_cols=148  Identities=18%  Similarity=0.174  Sum_probs=94.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC------CCC----------cccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ------FPE----------VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      ..++|+++|++++|||||+++|+...      ...          ...... +.......+..++..+.++|+||+.+|.
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGi-Ti~~~~~~~~~~~~~i~liDtPGh~~f~  158 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGI-TINTATVEYETENRHYAHVDCPGHADYV  158 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCe-eEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence            47899999999999999999998521      111          001111 1111122334455688999999999988


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      ......+..+|++++|+|+.+...  .....++..+...  ++| +++++||+|+.+.....+         ....+...
T Consensus       159 ~~~~~g~~~aD~ailVVda~~G~~--~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~i~~~i~~  225 (478)
T PLN03126        159 KNMITGAAQMDGAILVVSGADGPM--PQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLE---------LVELEVRE  225 (478)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCc--HHHHHHHHHHHHc--CCCeEEEEEecccccCHHHHHH---------HHHHHHHH
Confidence            777777788999999999987532  2223444444444  788 788999999865211110         01123334


Q ss_pred             HHHHc----CCceEEEeccCCcC
Q psy14754        147 MAQKI----NAFAYLECSAKSKE  165 (192)
Q Consensus       147 ~~~~~----~~~~~~~~Sa~~~~  165 (192)
                      +....    ..+|++++|+.++.
T Consensus       226 ~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        226 LLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HHHhcCCCcCcceEEEEEccccc
Confidence            44332    24689999998874

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.76  E-value=1.5e-17  Score=127.97  Aligned_cols=159  Identities=13%  Similarity=0.144  Sum_probs=98.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCC--CCC-------------------------c---ccCceeeeeeEEEEECCeE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQ--FPE-------------------------V---YVPTVFENYVADIEVDSKQ   52 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-------------------------~---~~~~~~~~~~~~~~~~~~~   52 (192)
                      ...++|+++|+.++|||||+.+|+...  ...                         .   ......+.......+...+
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            357899999999999999999987621  110                         0   0001111111223455667


Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hh--hchhhhhHHHHhhhCCCCc-EEEEeecccccCCcc
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SL--ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPN  126 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~  126 (192)
                      ..+.++|+|||.+|.......+..+|++++|+|+..+.   .+  +......+..+...  ++| +||++||+|......
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~  162 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVNY  162 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccchh
Confidence            78999999999999888888888999999999998752   11  11112233333333  666 679999999543111


Q ss_pred             chhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy14754        127 TIKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~  169 (192)
                      ....+..      ...+...+....+    .+|++++|+.+|+|+.+
T Consensus       163 ~~~~~~~------i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        163 SQERYDE------IKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hHHHHHH------HHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            1111110      1122223322222    36899999999999964

>TIGR00503 prfC peptide chain release factor 3

Probab=99.76  E-value=1.9e-17  Score=129.45  Aligned_cols=116  Identities=19%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC--CCCcc-c-------Cc-----------eeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPEVY-V-------PT-----------VFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~-~-------~~-----------~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      ...+|+|+|++++|||||+++|+...  ..... .       .+           ..+.......++..+..+.+|||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            45699999999999999999986421  11000 0       00           0111122334566778999999999


Q ss_pred             CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      +.+|.......++.+|++|+|+|+++.  ++...+.++......  +.|+++++||+|+..
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~~--~~PiivviNKiD~~~  146 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRLR--DTPIFTFMNKLDRDI  146 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEECccccC
Confidence            988877666678899999999999874  333333455544443  799999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.76  E-value=4.4e-18  Score=129.90  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=93.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcc------------cC--------------------ceeeeeeEEEEECCeEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY------------VP--------------------TVFENYVADIEVDSKQV   53 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~~--------------------~~~~~~~~~~~~~~~~~   53 (192)
                      +||+++|+.++|||||+++|+...-....            ..                    ...+.......+...+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999998753211100            00                    00001111223344556


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhh
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNK  133 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  133 (192)
                      .+.++||||+++|.......+..+|++++|+|+..+-.-+.  ......+... ...++++++||+|+.....  ..+..
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~-~~~~iivviNK~D~~~~~~--~~~~~  155 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLL-GIRHVVLAVNKMDLVDYDE--EVFEN  155 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHc-CCCcEEEEEEecccccchH--HHHHH
Confidence            89999999999887666667889999999999987532221  1222233322 1346899999999865221  00000


Q ss_pred             ccCCCCCHHHHHHHHHHcC--CceEEEeccCCcCCHHH
Q psy14754        134 MKQEPVKPEEGRAMAQKIN--AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~  169 (192)
                            ..++...+.+..+  ..+++++||++|+|+++
T Consensus       156 ------i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 ------IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             ------HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence                  0122223333332  35799999999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.76  E-value=1.3e-17  Score=128.19  Aligned_cols=158  Identities=12%  Similarity=0.109  Sum_probs=99.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCC--CCc-------------------------c---cCceeeeeeEEEEECCeE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQF--PEV-------------------------Y---VPTVFENYVADIEVDSKQ   52 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~-------------------------~---~~~~~~~~~~~~~~~~~~   52 (192)
                      ...++|+++|+.++|||||+.+|+...-  ...                         .   .....+.......+...+
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            3478999999999999999998875211  000                         0   000011111122345667


Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhh------chhhhhHHHHhhhCCCCc-EEEEeecccccCCc
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE------NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDP  125 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  125 (192)
                      ..+.++|+|||++|.......+..+|++|+|+|+.+. .++      ......+......  ++| +||++||+|+....
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~--gi~~iIV~vNKmD~~~~~  161 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL--GVKQMICCCNKMDATTPK  161 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc--CCCcEEEEEEcccCCchh
Confidence            7899999999999998888889999999999999873 232      1111222222222  674 68899999976211


Q ss_pred             cchhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy14754        126 NTIKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~  169 (192)
                      .....+.      ...++...+....+    .++++++||++|+|+.+
T Consensus       162 ~~~~~~~------~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YSKARYD------EIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhHHHHH------HHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            1000010      01234455555544    36899999999999853

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=3e-17  Score=117.70  Aligned_cols=161  Identities=23%  Similarity=0.238  Sum_probs=112.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc--c------cccccC-
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD--R------LRPLSY-   74 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~------~~~~~~-   74 (192)
                      .-..|+|.|.||+|||||++++.+.+....+.|.++...... .++.+...++++||||.-+-.  .      .....+ 
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG-hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG-HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe-eeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            456799999999999999999999999888888877665433 466677799999999942211  1      111112 


Q ss_pred             CCCCEEEEEEECCChh--hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         75 PDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      .-.++++|++|.+...  +++.. ..++..++..+. .|+++|+||+|....            +..  ++.......-+
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~------------e~~--~~~~~~~~~~~  309 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADE------------EKL--EEIEASVLEEG  309 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccch------------hHH--HHHHHHHHhhc
Confidence            2378999999998754  34443 356677777665 999999999998752            111  22222222223


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ......+++..+.+++.+-..+...+.+.
T Consensus       310 ~~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         310 GEEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             cccccceeeeehhhHHHHHHHHHHHhhch
Confidence            23456789999999998888888776655

>KOG4423|consensus

Probab=99.75  E-value=7.1e-20  Score=120.47  Aligned_cols=165  Identities=22%  Similarity=0.370  Sum_probs=132.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-EEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ++++|+|..++|||+++.+++...+...+..+++..+. +.... +...+++++||+.||++|..+...+++.+++..+|
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV  105 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV  105 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence            68999999999999999999998888877777664442 22222 33456789999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      +|++....++.. ..|.+.+....     .-.|+++..||+|.....           ..-......++++..+....++
T Consensus       106 fdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-----------~~~~~~~~d~f~kengf~gwte  173 (229)
T KOG4423|consen  106 FDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-----------KNEATRQFDNFKKENGFEGWTE  173 (229)
T ss_pred             EEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHh-----------hhhhHHHHHHHHhccCccceee
Confidence            999998888888 47887765432     246789999999986521           1122355667888888788999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +|++++.+++|.-..+++++....
T Consensus       174 ts~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  174 TSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             eccccccChhHHHHHHHHHHHhhc
Confidence            999999999999999999887764

>PRK13351 elongation factor G; Reviewed

Probab=99.75  E-value=6.9e-18  Score=136.77  Aligned_cols=117  Identities=18%  Similarity=0.166  Sum_probs=81.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCC--------Cc-----ccC----ceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFP--------EV-----YVP----TVFENYVADIEVDSKQVELALWDTAGQEDY   66 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--------~~-----~~~----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   66 (192)
                      ...+|+|+|+.++|||||+++|+...-.        ..     ..+    ...+.......+...+..+.+|||||+.+|
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            4569999999999999999999853210        00     000    000111111223345678999999999998


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      ...+...++.+|++++|+|+++....+.. ..| ..+...  +.|+++++||+|+...
T Consensus        87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~  140 (687)
T PRK13351         87 TGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence            88888889999999999999886544432 233 334333  7999999999998764

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.75  E-value=3.8e-17  Score=132.33  Aligned_cols=116  Identities=18%  Similarity=0.033  Sum_probs=79.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCC-----ccc------------CceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPE-----VYV------------PTVFENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      .+|+|+|++++|||||+++|+...-..     ...            ....+.......+...+..+.+|||||+.+|..
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~   90 (689)
T TIGR00484        11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV   90 (689)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence            399999999999999999997522110     000            001111111223344567899999999998877


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      .+...++.+|++++|+|+.+....+.  ..++..+...  +.|+++++||+|+....
T Consensus        91 ~~~~~l~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        91 EVERSLRVLDGAVAVLDAVGGVQPQS--ETVWRQANRY--EVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence            77888899999999999988643332  2344444443  78999999999997543

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.75  E-value=2.2e-17  Score=127.98  Aligned_cols=157  Identities=15%  Similarity=0.118  Sum_probs=95.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCccc-----------Cce---------------------eeeeeEEEEECC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV-----------PTV---------------------FENYVADIEVDS   50 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----------~~~---------------------~~~~~~~~~~~~   50 (192)
                      ...++|+++|++++|||||+++|+...-.....           ...                     .+.......+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            357999999999999999999987643211100           000                     000111122344


Q ss_pred             eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy14754         51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE  130 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  130 (192)
                      +...+.++||||++.|.......+..+|++++|+|+..+-.-+.  ......+... ...|+++++||+|+.....  ..
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt--~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~--~~  179 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT--RRHSFIATLL-GIKHLVVAVNKMDLVDYSE--EV  179 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc--hHHHHHHHHh-CCCceEEEEEeeccccchh--HH
Confidence            55689999999998886655556789999999999987522111  1222222222 1357899999999864221  00


Q ss_pred             hhhccCCCCCHHHHHHHHHHcC---CceEEEeccCCcCCHHHH
Q psy14754        131 LNKMKQEPVKPEEGRAMAQKIN---AFAYLECSAKSKEGVREV  170 (192)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~  170 (192)
                      +..      ...+...+....+   ..+++++||++|+|++++
T Consensus       180 ~~~------i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FER------IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHH------HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            000      0112222233322   368999999999999764

>KOG0462|consensus

Probab=99.74  E-value=2.9e-17  Score=124.44  Aligned_cols=167  Identities=19%  Similarity=0.128  Sum_probs=115.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCC--CC-------------cccCcee-eeeeEE-EEECCeEEEEEEEeCCCCCccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQF--PE-------------VYVPTVF-ENYVAD-IEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~-------------~~~~~~~-~~~~~~-~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      --++.|+.+..-|||||..+|+...-  ..             .....++ ...... +..++..+.+.++|||||.+|.
T Consensus        60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs  139 (650)
T KOG0462|consen   60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS  139 (650)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence            35789999999999999999886321  00             0011111 011111 1223566899999999999999


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM  147 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (192)
                      ......+..++++|+|+|++.+-.-+.....| ..++.   +.-+|.|+||+|+..+++.          .+ .....++
T Consensus       140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~-lAfe~---~L~iIpVlNKIDlp~adpe----------~V-~~q~~~l  204 (650)
T KOG0462|consen  140 GEVSRSLAACDGALLVVDASQGVQAQTVANFY-LAFEA---GLAIIPVLNKIDLPSADPE----------RV-ENQLFEL  204 (650)
T ss_pred             ceehehhhhcCceEEEEEcCcCchHHHHHHHH-HHHHc---CCeEEEeeeccCCCCCCHH----------HH-HHHHHHH
Confidence            99999999999999999999864444432222 22222   7899999999999886541          11 1222233


Q ss_pred             HHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhcccccc
Q psy14754        148 AQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKG  187 (192)
Q Consensus       148 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~  187 (192)
                      ....+ .+.+.+||++|.|+++++++|++.+..++.....
T Consensus       205 F~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~  243 (650)
T KOG0462|consen  205 FDIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDA  243 (650)
T ss_pred             hcCCc-cceEEEEeccCccHHHHHHHHHhhCCCCCCCCCc
Confidence            33333 3789999999999999999999999888765544

>COG2262 HflX GTPases [General function prediction only]

Probab=99.74  E-value=5.3e-17  Score=119.73  Aligned_cols=156  Identities=21%  Similarity=0.231  Sum_probs=108.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeeeeEEEEECCeEEEEEEEeCCCCCc---------ccccccccC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDSKQVELALWDTAGQED---------YDRLRPLSY   74 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~   74 (192)
                      -..|.++|..|||||||+|+|.+..... ....++-+...+.+.+.+ +..+.+-||.|.-+         |.+... ..
T Consensus       192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E~  269 (411)
T COG2262         192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE-EV  269 (411)
T ss_pred             CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-Hh
Confidence            3579999999999999999999866543 333333344455555554 45789999999433         222222 23


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ..+|+++.|+|++++...+.+ +.....+... ....|+|+|.||+|+..+..                .........+ 
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----------------~~~~~~~~~~-  331 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE----------------ILAELERGSP-  331 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh----------------hhhhhhhcCC-
Confidence            479999999999999666555 3455555543 34799999999999876321                1112222222 


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                       ..+.+||++++|++.+++.|...+...
T Consensus       332 -~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         332 -NPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             -CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence             468899999999999999999988744

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.73  E-value=1.9e-17  Score=116.28  Aligned_cols=112  Identities=15%  Similarity=0.070  Sum_probs=77.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccC----------------cee-eeeeEEEEEC--------CeEEEEEEEeCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVP----------------TVF-ENYVADIEVD--------SKQVELALWDTA   61 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~-~~~~~~~~~~--------~~~~~~~l~D~~   61 (192)
                      +|+++|+.++|||||+.+|+...-......                ..+ ........+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999986431100000                000 0001112222        337889999999


Q ss_pred             CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      |+.+|.......++.+|++++|+|+.++...+..  ..+.....  .+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence            9999998888899999999999999986443332  23333322  268999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.73  E-value=3.8e-17  Score=117.70  Aligned_cols=162  Identities=20%  Similarity=0.174  Sum_probs=106.4

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-------ccccCCCCCEE
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-------RPLSYPDTDVI   80 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~~~   80 (192)
                      |.++|.|++|||||++++...+......|.++-....-+......-.|.+-|+||.-.-.+.       .-..++.+.++
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL  241 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVL  241 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhee
Confidence            67999999999999999999887766666665444332222244557999999994332211       12234568999


Q ss_pred             EEEEECCChhh---hhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754         81 LMCFSIDSPDS---LENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF  154 (192)
Q Consensus        81 i~v~d~~~~~~---~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (192)
                      ++|+|++..+.   .++. +.+...+..+   ..++|.+||+||+|+..+.+            ........+.+.....
T Consensus       242 ~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e------------~~~~~~~~l~~~~~~~  308 (369)
T COG0536         242 LHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE------------ELEELKKALAEALGWE  308 (369)
T ss_pred             EEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH------------HHHHHHHHHHHhcCCC
Confidence            99999986542   4443 2444555544   35899999999999765321            1111122233333322


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ..+.+||.+++|++++...+.+.+...+
T Consensus       309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         309 VFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            2223999999999999999988887764

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.72  E-value=3.2e-17  Score=125.95  Aligned_cols=165  Identities=16%  Similarity=0.134  Sum_probs=102.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC---cccCcee--eeeeEE-----------E---EEC---------------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVF--ENYVAD-----------I---EVD---------------   49 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~--~~~~~~-----------~---~~~---------------   49 (192)
                      .+++|+++|+...|||||+.+|.+.....   ......+  --+...           .   ...               
T Consensus        33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (460)
T PTZ00327         33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK  112 (460)
T ss_pred             CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence            36899999999999999999999743211   1000000  000000           0   000               


Q ss_pred             -CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754         50 -SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus        50 -~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                       .....+.++|+||++.|.......+..+|++++|+|+.++. ..+. .+.+ ..+... .-.|+|+++||+|+.+....
T Consensus       113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl-~i~~~l-gi~~iIVvlNKiDlv~~~~~  189 (460)
T PTZ00327        113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHL-AAVEIM-KLKHIIILQNKIDLVKEAQA  189 (460)
T ss_pred             ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHH-HHHHHc-CCCcEEEEEecccccCHHHH
Confidence             00246899999999998877777778999999999998741 1111 1222 222221 13468999999998752211


Q ss_pred             hhhhhhccCCCCCHHHHHHHHHH--cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        128 IKELNKMKQEPVKPEEGRAMAQK--INAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .+.          .++..++...  ....+++++||++|+|+++|++.|...+...
T Consensus       190 ~~~----------~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        190 QDQ----------YEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             HHH----------HHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            111          1122222211  1346899999999999999999999766544

>KOG0077|consensus

Probab=99.71  E-value=2.2e-18  Score=111.45  Aligned_cols=169  Identities=20%  Similarity=0.281  Sum_probs=113.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      .=|++++|.-|+|||||++.|...+..+. .|+.-.+..   .....+++++.+|.+||..-+..|..++..+|++++.+
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlHPTSE---~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv   95 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE---ELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV   95 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHcccccccc-CCCcCCChH---HheecCceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence            45899999999999999999988775443 222211111   23446789999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC--CceEEEecc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN--AFAYLECSA  161 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa  161 (192)
                      |+.|.+.+.+....+...+... ..+.|+++.+||+|...+-...+....+........++.......+  -..++.||.
T Consensus        96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi  175 (193)
T KOG0077|consen   96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSI  175 (193)
T ss_pred             ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEE
Confidence            9999998888876555555443 3589999999999987754222111100000000000000000001  135788999


Q ss_pred             CCcCCHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRA  177 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~  177 (192)
                      ..+.|.-+.|.|+...
T Consensus       176 ~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  176 VRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EccCccceeeeehhhh
Confidence            9888888888876543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.71  E-value=2.5e-17  Score=104.93  Aligned_cols=105  Identities=25%  Similarity=0.383  Sum_probs=66.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc---------cccccCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR---------LRPLSYP   75 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~   75 (192)
                      +|+++|.+|+|||||+|+|++....... .+..+... ...+..+..  .+.++||||......         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6999999999999999999986432222 22222221 223334444  457999999543211         1222337


Q ss_pred             CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeec
Q psy14754         76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK  118 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  118 (192)
                      .+|++++|+|..++  .......++..++   .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~--~~~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNP--ITEDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSH--SHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCC--CCHHHHHHHHHHh---cCCCEEEEEcC
Confidence            89999999997773  2222234444454   48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK12739 elongation factor G; Reviewed

Probab=99.71  E-value=6.7e-17  Score=130.84  Aligned_cols=116  Identities=20%  Similarity=0.070  Sum_probs=79.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCC-----cc------------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPE-----VY------------VPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      -.+|+|+|++++|||||+++|+...-..     ..            .....+.......+...+..+.++||||+.+|.
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~   87 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT   87 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence            4589999999999999999997521100     00            001111111122333456789999999998887


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      ..+...++.+|++++|+|+.++-  +...+.++..+...  +.|.++++||+|+...
T Consensus        88 ~e~~~al~~~D~~ilVvDa~~g~--~~qt~~i~~~~~~~--~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         88 IEVERSLRVLDGAVAVFDAVSGV--EPQSETVWRQADKY--GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCC--CHHHHHHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            77888888999999999998763  22223444444443  7999999999999753

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.71  E-value=4e-17  Score=131.11  Aligned_cols=155  Identities=17%  Similarity=0.114  Sum_probs=94.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCccc----------Ccee----------------------eeeeEEEEECCe
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV----------PTVF----------------------ENYVADIEVDSK   51 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------~~~~----------------------~~~~~~~~~~~~   51 (192)
                      ..++|+++|++++|||||+++|+...-.....          ....                      +.......+...
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~  102 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP  102 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence            57899999999999999999998743221100          0000                      000111123344


Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL  131 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  131 (192)
                      +..+.++||||++.|.......+..+|++++|+|+..+..-+.  ......+... ...|++|++||+|+......  .+
T Consensus       103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t--~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~--~~  177 (632)
T PRK05506        103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT--RRHSFIASLL-GIRHVVLAVNKMDLVDYDQE--VF  177 (632)
T ss_pred             CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC--HHHHHHHHHh-CCCeEEEEEEecccccchhH--HH
Confidence            5578999999998876555566789999999999976532111  1222233322 13578899999998642110  00


Q ss_pred             hhccCCCCCHHHHHHHHHHcC--CceEEEeccCCcCCHHH
Q psy14754        132 NKMKQEPVKPEEGRAMAQKIN--AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~  169 (192)
                      ..      ...+...+...++  ..+++++||++|+|+++
T Consensus       178 ~~------i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DE------IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HH------HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            00      0122223333333  25799999999999874

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.71  E-value=2.6e-16  Score=115.86  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=53.2

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE--EEE--------------------EC-CeEEEEEEEeCCCC-
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA--DIE--------------------VD-SKQVELALWDTAGQ-   63 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~--------------------~~-~~~~~~~l~D~~g~-   63 (192)
                      |+++|.|++|||||+|+|++........|..+.....  ...                    .+ ...+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5899999999999999999987543222332211111  100                    11 13478999999997 


Q ss_pred             ---Ccccccccc---cCCCCCEEEEEEECCC
Q psy14754         64 ---EDYDRLRPL---SYPDTDVILMCFSIDS   88 (192)
Q Consensus        64 ---~~~~~~~~~---~~~~~~~~i~v~d~~~   88 (192)
                         +.+......   .++++|++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               333333223   4789999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.71  E-value=3.4e-18  Score=115.08  Aligned_cols=120  Identities=20%  Similarity=0.240  Sum_probs=75.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEE-CCeEEEEEEEeCCCCCccccccccc---CCCCCE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DSKQVELALWDTAGQEDYDRLRPLS---YPDTDV   79 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~---~~~~~~   79 (192)
                      ..-.|+++|++|||||+|..+|..+....+.... ....  ...+ ......+.++|+|||.+.+......   .+.+.+
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            3457999999999999999999999655443222 1111  1111 2244578999999998877644443   678999


Q ss_pred             EEEEEECCC-hhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCcc
Q psy14754         80 ILMCFSIDS-PDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        80 ~i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~  126 (192)
                      +|||+|.+. ...+....++++..+...   ....|++|++||.|+..+.+
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~  129 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP  129 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence            999999975 445666666666665542   25789999999999987544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK00007 elongation factor G; Reviewed

Probab=99.70  E-value=1.7e-16  Score=128.40  Aligned_cols=116  Identities=18%  Similarity=0.068  Sum_probs=78.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC--CCC---cc------------cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ--FPE---VY------------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~--~~~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      .+|+|+|++++|||||+++|+...  ...   ..            .....+.......+...+..+.++||||+.+|..
T Consensus        11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~   90 (693)
T PRK00007         11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI   90 (693)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence            499999999999999999997411  100   00            0011111111222333456899999999988776


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      .....++.+|++++|+|+...-..+  ....+..+...  +.|.++++||+|+....
T Consensus        91 ev~~al~~~D~~vlVvda~~g~~~q--t~~~~~~~~~~--~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         91 EVERSLRVLDGAVAVFDAVGGVEPQ--SETVWRQADKY--KVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHcCEEEEEEECCCCcchh--hHHHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence            6677788999999999988753222  23444455444  78999999999997533

>KOG1191|consensus

Probab=99.70  E-value=1.5e-16  Score=119.35  Aligned_cols=169  Identities=22%  Similarity=0.228  Sum_probs=111.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-ccccc--------cccC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-YDRLR--------PLSY   74 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~--------~~~~   74 (192)
                      ..++|+++|+||+|||||+|+|.+.........++++.......++..++++.+.||+|..+ -.+..        ...+
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~  346 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI  346 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence            46899999999999999999999999888777777777776667778889999999999654 11111        2245


Q ss_pred             CCCCEEEEEEECCChhhhhchh-hhhHHHHhhhC-------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         75 PDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFC-------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      +.+|++++|+|+.....-+.+. ...+.......       ...|++++.||.|+...-.....      ..+.....  
T Consensus       347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~------~~~~~~~~--  418 (531)
T KOG1191|consen  347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK------IPVVYPSA--  418 (531)
T ss_pred             hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC------Cceecccc--
Confidence            6899999999994422222221 12222222111       24799999999999875221100      00000000  


Q ss_pred             HHHHcCCceE-EEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        147 MAQKINAFAY-LECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       147 ~~~~~~~~~~-~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                        .-.+.+++ .++|+++++|++++.+.+...+....
T Consensus       419 --~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  419 --EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             --ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence              11122344 45999999999999999888776653

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.70  E-value=5.6e-16  Score=107.61  Aligned_cols=165  Identities=15%  Similarity=0.143  Sum_probs=99.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCccc-CceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-----------cccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-PTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-----------RPLS   73 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~~~   73 (192)
                      ++|+++|.+|+|||||+|++++........ ....+...........+..+.++||||..+....           ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            589999999999999999999876543321 1111111111112224467999999995443210           1123


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      .++.|++|+|+++.+   +.......+..+...+.   -.++++++|+.|............    .  .....+.+.+.
T Consensus        81 ~~g~~~illVi~~~~---~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~----~--~~~~l~~l~~~  151 (196)
T cd01852          81 APGPHAFLLVVPLGR---FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLE----N--SCEALKRLLEK  151 (196)
T ss_pred             CCCCEEEEEEEECCC---cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHH----h--ccHHHHHHHHH
Confidence            467899999999876   23333344555554332   268999999999876432211111    0  12344555555


Q ss_pred             cCCceEEEe-----ccCCcCCHHHHHHHHHHHHhh
Q psy14754        151 INAFAYLEC-----SAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       151 ~~~~~~~~~-----Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      .+. -++..     ++..+.++++|++.|.+.+.+
T Consensus       152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            543 22222     256778899999998888776

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01850 CDC_Septin CDC/Septin

Probab=99.69  E-value=7.9e-16  Score=111.73  Aligned_cols=116  Identities=21%  Similarity=0.252  Sum_probs=74.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc----------cCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccc----
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY----------VPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDR----   68 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----   68 (192)
                      ..++|+++|++|+|||||+|+|++..+....          .++.. ......+..++..+.+.+|||||..++..    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            4689999999999999999999998765432          12211 11223344456668899999999433211    


Q ss_pred             ----------------------cccccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         69 ----------------------LRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        69 ----------------------~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                                            .+...+.  .+|+++++++.+. ..+......++..+..   ..|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK---RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc---cCCEEEEEECCCcCC
Confidence                                  1112233  3677788877664 2233332234444443   699999999999965

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG0090|consensus

Probab=99.68  E-value=1.1e-16  Score=108.03  Aligned_cols=168  Identities=15%  Similarity=0.155  Sum_probs=108.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCC---CCCEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYP---DTDVIL   81 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~~~~i   81 (192)
                      .-.|+++|+.+||||+|..+|..+....+.    +........+..+.-.++++|.|||.+.+.....++.   .+-+++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv----tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV----TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCee----eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            457999999999999999999988554332    1111122233333445899999999887766555555   789999


Q ss_pred             EEEECCC-hhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhcc----------------------
Q psy14754         82 MCFSIDS-PDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMK----------------------  135 (192)
Q Consensus        82 ~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----------------------  135 (192)
                      ||+|... .....+..+.++..+...   ....|++|+.||.|+..+.........+.                      
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999865 234555555666665543   34789999999999987665422111100                      


Q ss_pred             CCCCCHHHHHH--HHHHc-CCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        136 QEPVKPEEGRA--MAQKI-NAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       136 ~~~~~~~~~~~--~~~~~-~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      .+...-.++..  |.+-- ..+.|.+.|++++ +++++-+|+.++
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            01111111122  22211 2257889999998 899999998765

>KOG1145|consensus

Probab=99.67  E-value=1.3e-15  Score=115.71  Aligned_cols=166  Identities=17%  Similarity=0.168  Sum_probs=113.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +++.-|-|+|+..-|||||+.+|-+..........++.-. ...+... .+-.+++.|||||.-|..++..-...+|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            5678899999999999999999998887665333322211 2233445 4468999999999999999988888999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|+.+.|.---+..  .-+.-.  ...+.|+||.+||+|..+.++..-..+-+       ..+....+.-+.++++++||
T Consensus       230 LVVAadDGVmpQT~--EaIkhA--k~A~VpiVvAinKiDkp~a~pekv~~eL~-------~~gi~~E~~GGdVQvipiSA  298 (683)
T KOG1145|consen  230 LVVAADDGVMPQTL--EAIKHA--KSANVPIVVAINKIDKPGANPEKVKRELL-------SQGIVVEDLGGDVQVIPISA  298 (683)
T ss_pred             EEEEccCCccHhHH--HHHHHH--HhcCCCEEEEEeccCCCCCCHHHHHHHHH-------HcCccHHHcCCceeEEEeec
Confidence            99999885211111  111111  22389999999999987654421111100       00111222234578999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      ++|+|++.|-+.+.-.+.-
T Consensus       299 l~g~nl~~L~eaill~Ae~  317 (683)
T KOG1145|consen  299 LTGENLDLLEEAILLLAEV  317 (683)
T ss_pred             ccCCChHHHHHHHHHHHHH
Confidence            9999999999987655544

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=3.4e-16  Score=115.49  Aligned_cols=157  Identities=13%  Similarity=0.152  Sum_probs=99.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC--CCCcc----------------------cC------ceeeeeeEEEEECCeEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPEVY----------------------VP------TVFENYVADIEVDSKQV   53 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~----------------------~~------~~~~~~~~~~~~~~~~~   53 (192)
                      .+++++++|+..+|||||+-+|+...  ++...                      +.      .+.+.......++.+.+
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~   85 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY   85 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence            57999999999999999998887632  11100                      00      01111122234556667


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---h--hhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---S--LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI  128 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  128 (192)
                      .++++|+|||.+|-........++|++|+|+|+.+++   .  ..... .....+.+...-..+||++||+|..+-  ..
T Consensus        86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQt-rEH~~La~tlGi~~lIVavNKMD~v~w--de  162 (428)
T COG5256          86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQT-REHAFLARTLGIKQLIVAVNKMDLVSW--DE  162 (428)
T ss_pred             eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCch-hHHHHHHHhcCCceEEEEEEccccccc--CH
Confidence            8999999999999988888889999999999998863   1  11221 122222232334678999999999862  22


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy14754        129 KELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~  169 (192)
                      +.++.+      ..+...+.+..+    .++|+++|+..|+|+.+
T Consensus       163 ~rf~ei------~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 ERFEEI------VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHH------HHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            222211      112222433332    26799999999999854

>PRK09866 hypothetical protein; Provisional

Probab=99.65  E-value=9.2e-15  Score=114.12  Aligned_cols=109  Identities=16%  Similarity=0.192  Sum_probs=71.0

Q ss_pred             EEEEEeCCCCCcc-----cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy14754         54 ELALWDTAGQEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI  128 (192)
Q Consensus        54 ~~~l~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  128 (192)
                      .+.++||||....     .......+..+|++++|+|.....+..+  ..+...++....+.|+++|+||+|+....   
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dre---  305 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRN---  305 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCcc---
Confidence            5788999996432     1122346788999999999987432222  34555555543336999999999985321   


Q ss_pred             hhhhhccCCCCCHHHHHHHHH------HcCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754        129 KELNKMKQEPVKPEEGRAMAQ------KINAFAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                               ....+....+..      ......+|++||+.|.|++++++.|..
T Consensus       306 ---------eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        306 ---------SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             ---------cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence                     111222223221      112236899999999999999999887

>KOG1490|consensus

Probab=99.64  E-value=4.5e-16  Score=117.08  Aligned_cols=168  Identities=18%  Similarity=0.126  Sum_probs=119.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccc---------c
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPL---------S   73 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---------~   73 (192)
                      ...-.++++|.|++|||||++.+........+.++++...... .+++.-..++++||||.-+......+         .
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG-H~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG-HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh-hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            3456789999999999999999999887776666665444222 45666678999999995433222111         2


Q ss_pred             CCCCCEEEEEEECCChh--hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH--HHHHH
Q psy14754         74 YPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG--RAMAQ  149 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  149 (192)
                      .+--.+++|++|++...  +..... .++..++..+.+.|+|+|+||+|+...            +.+.++..  .+...
T Consensus       245 AHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~------------edL~~~~~~ll~~~~  311 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRP------------EDLDQKNQELLQTII  311 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCc------------cccCHHHHHHHHHHH
Confidence            23356789999998854  333332 577788888889999999999999874            33433332  22223


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      .-+.++++++|..+.+|+-++....++.++..+-.
T Consensus       312 ~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE  346 (620)
T KOG1490|consen  312 DDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVE  346 (620)
T ss_pred             hccCceEEEecccchhceeeHHHHHHHHHHHHHHH
Confidence            33447999999999999999999988888887643

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=4.5e-15  Score=111.19  Aligned_cols=160  Identities=19%  Similarity=0.171  Sum_probs=112.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCC--C-------------cccCceee-eeeEEEEE---CCeEEEEEEEeCCCCCcc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFP--E-------------VYVPTVFE-NYVADIEV---DSKQVELALWDTAGQEDY   66 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~--~-------------~~~~~~~~-~~~~~~~~---~~~~~~~~l~D~~g~~~~   66 (192)
                      .+..++.+...|||||..+++...-.  .             ......+. .....+.+   +++.+.+.++|||||.+|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            46788999999999999998763211  0             00111111 01111122   457899999999999999


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      .......+..|.++++++|++.+-.-+.+...+ ..+..   +.-+|-|+||+|+..+++              ....++
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y-lAle~---~LeIiPViNKIDLP~Adp--------------ervk~e  151 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALEN---NLEIIPVLNKIDLPAADP--------------ERVKQE  151 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHH-HHHHc---CcEEEEeeecccCCCCCH--------------HHHHHH
Confidence            999888899999999999999875555553223 23333   788999999999987543              222333


Q ss_pred             HHHHcC--CceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        147 MAQKIN--AFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       147 ~~~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ..+..+  .-..+.+||++|.||+++++.|++.+-.++.
T Consensus       152 Ie~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         152 IEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             HHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence            444433  2356889999999999999999999988764

>cd00066 G-alpha G protein alpha subunit

Probab=99.63  E-value=5.5e-15  Score=109.44  Aligned_cols=134  Identities=19%  Similarity=0.227  Sum_probs=90.7

Q ss_pred             CCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCCh----------hhhhchhhhhHHHHhh-hCCCCcEEEEee
Q psy14754         49 DSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKH-FCPNVPIILVGN  117 (192)
Q Consensus        49 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~-~~~~~p~ivv~n  117 (192)
                      ..++..+.+||++|+...+..|.+++.+++++++|+|+++.          ..+.+....+...+.. .+.++|+++++|
T Consensus       157 ~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N  236 (317)
T cd00066         157 TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN  236 (317)
T ss_pred             EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence            34567899999999999999999999999999999999985          2333333334444432 336899999999


Q ss_pred             cccccCCccchhhhhhccCCC----CCHHHHHHHHH-----Hc----CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        118 KKDLRNDPNTIKELNKMKQEP----VKPEEGRAMAQ-----KI----NAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       118 K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----~~----~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |.|+.........+...-+..    ...+.+..+..     ..    ..+....++|.+..+++.+|+.+.+.+....
T Consensus       237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            999876443332232222221    22334433321     11    1234567999999999999999988887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.63  E-value=1.3e-15  Score=94.15  Aligned_cols=137  Identities=23%  Similarity=0.264  Sum_probs=94.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC----CcccccccccCCCCCEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ----EDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~~~~i~   82 (192)
                      |++++|+.|+|||||.+++.+........+.        +++..+    -.+||||.    ..+.+-.......+|.+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQA--------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA--------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhcccce--------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            7999999999999999999987654332211        223222    13599993    2222223345568999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |-.++++++.-.  ..+....     ..|+|-|+||.|+.++              ..-...+++..+-+.-++|.+|+.
T Consensus        71 v~~and~~s~f~--p~f~~~~-----~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaGa~~IF~~s~~  129 (148)
T COG4917          71 VHAANDPESRFP--PGFLDIG-----VKKVIGVVTKADLAED--------------ADISLVKRWLREAGAEPIFETSAV  129 (148)
T ss_pred             eecccCccccCC--ccccccc-----ccceEEEEecccccch--------------HhHHHHHHHHHHcCCcceEEEecc
Confidence            999998854222  1222222     4569999999999852              123344566666777799999999


Q ss_pred             CcCCHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATR  176 (192)
Q Consensus       163 ~~~gi~~~~~~i~~  176 (192)
                      ++.|++++++.+..
T Consensus       130 d~~gv~~l~~~L~~  143 (148)
T COG4917         130 DNQGVEELVDYLAS  143 (148)
T ss_pred             CcccHHHHHHHHHh
Confidence            99999999998754

>PRK12740 elongation factor G; Reviewed

Probab=99.63  E-value=1.2e-15  Score=123.54  Aligned_cols=111  Identities=19%  Similarity=0.092  Sum_probs=73.7

Q ss_pred             EcCCCCchhHHHHHHhhCCCCCcc----cC--c-----------eeeeeeEEEEECCeEEEEEEEeCCCCCccccccccc
Q psy14754         11 VGDGACGKTCLLIVFSKDQFPEVY----VP--T-----------VFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLS   73 (192)
Q Consensus        11 ~G~~~~GKSsli~~l~~~~~~~~~----~~--~-----------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   73 (192)
                      +|++++|||||+++|+...-....    ..  +           +.+.......+...+..+.+|||||+.+|...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999653211000    00  0           000111112333456789999999998887777778


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      +..+|++++|+|+++.......  .++..+...  +.|+++++||+|+....
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~~--~~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE--TVWRQAEKY--GVPRIIFVNKMDRAGAD  128 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence            8899999999999886443332  233333333  78999999999987533

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.62  E-value=1.3e-14  Score=110.02  Aligned_cols=82  Identities=15%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE-E---------------------EC-CeEEEEEEEeCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-E---------------------VD-SKQVELALWDTAG   62 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~---------------------~~-~~~~~~~l~D~~g   62 (192)
                      ++|+++|.||+|||||+|+|.+........+..+......+ .                     .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988765432232221111110 0                     01 2346799999999


Q ss_pred             CCc----cccccccc---CCCCCEEEEEEECC
Q psy14754         63 QED----YDRLRPLS---YPDTDVILMCFSID   87 (192)
Q Consensus        63 ~~~----~~~~~~~~---~~~~~~~i~v~d~~   87 (192)
                      ...    .......+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            532    22222233   78999999999997

>KOG3905|consensus

Probab=99.62  E-value=4.9e-15  Score=106.25  Aligned_cols=175  Identities=15%  Similarity=0.222  Sum_probs=118.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCC----CCEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPD----TDVI   80 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~~~~   80 (192)
                      .-+|+|+|..++|||||+.+|.+..-......-........-+.++...++.+|-.-|...+..+....+..    -.++
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlv  131 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLV  131 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEE
Confidence            357999999999999999999987632221111111112222344556788999999976666555554433    3578


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhh-------------------------C----------------------------
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHF-------------------------C----------------------------  107 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------------~----------------------------  107 (192)
                      |++.|+++++.+-+..+.|...++..                         .                            
T Consensus       132 iltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llP  211 (473)
T KOG3905|consen  132 ILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLP  211 (473)
T ss_pred             EEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccc
Confidence            89999999966555545565433211                         1                            


Q ss_pred             ---------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        108 ---------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       108 ---------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                               -++|++||+||+|.....+....+.+... .......+.||-.++. .++.+|+++..|++-+.++|.+..
T Consensus       212 L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehf-dfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  212 LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHF-DFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHH-HHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHh
Confidence                     02599999999999664443333322211 1234667889999995 899999999999999999999988


Q ss_pred             hhh
Q psy14754        179 LQV  181 (192)
Q Consensus       179 ~~~  181 (192)
                      +..
T Consensus       290 yG~  292 (473)
T KOG3905|consen  290 YGF  292 (473)
T ss_pred             cCc
Confidence            764

>KOG0461|consensus

Probab=99.61  E-value=8.5e-15  Score=105.88  Aligned_cols=175  Identities=17%  Similarity=0.138  Sum_probs=114.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCC----CCCcccCceeeeeeEE------------EEECCeEEEEEEEeCCCCCcc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQ----FPEVYVPTVFENYVAD------------IEVDSKQVELALWDTAGQEDY   66 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~D~~g~~~~   66 (192)
                      +..+++.++|+..||||||..++..-.    |......+ +......            -...++...+.++|+|||...
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~-eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQST-ERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCccc-ccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            357899999999999999999987532    22211111 1111110            012456678999999999776


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      -.......+-.|..++|+|+.....-+.....++..+.    -...+||+||+|...++.+...++....+.   ....+
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~---~KtLe  156 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKV---RKTLE  156 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHH---HHHHH
Confidence            66665666678999999999887555555333333333    356799999999988654433332211110   00001


Q ss_pred             HHHHcCCceEEEeccCCc----CCHHHHHHHHHHHHhhhcccc
Q psy14754        147 MAQKINAFAYLECSAKSK----EGVREVFETATRAALQVKKKK  185 (192)
Q Consensus       147 ~~~~~~~~~~~~~Sa~~~----~gi~~~~~~i~~~~~~~~~~~  185 (192)
                      -...-++.|++++||++|    +++.++.+.+..++..+++.-
T Consensus       157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~  199 (522)
T KOG0461|consen  157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE  199 (522)
T ss_pred             hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence            111224479999999999    899999999999999887653

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.61  E-value=1.4e-14  Score=119.88  Aligned_cols=160  Identities=19%  Similarity=0.224  Sum_probs=93.7

Q ss_pred             CchhHHHHHHhhCCCCCcccCceeeee-eEEEEECC----------------eEEEEEEEeCCCCCcccccccccCCCCC
Q psy14754         16 CGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDS----------------KQVELALWDTAGQEDYDRLRPLSYPDTD   78 (192)
Q Consensus        16 ~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~~~l~D~~g~~~~~~~~~~~~~~~~   78 (192)
                      ++||||+.++-+..........++... ...+..+.                ..-.+.+|||||++.|.......+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            359999999998877554322222111 11111111                0113899999999999887777788899


Q ss_pred             EEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc-ch-----hh--------hhhc----------
Q psy14754         79 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN-TI-----KE--------LNKM----------  134 (192)
Q Consensus        79 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~-----~~--------~~~~----------  134 (192)
                      ++++|+|+++.-  .......+..+...  +.|+++++||+|+...-. ..     ..        ...+          
T Consensus       552 ivlLVVDa~~Gi--~~qT~e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~  627 (1049)
T PRK14845        552 LAVLVVDINEGF--KPQTIEAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK  627 (1049)
T ss_pred             EEEEEEECcccC--CHhHHHHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence            999999998731  11111223333333  689999999999964211 00     00        0000          


Q ss_pred             -cCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        135 -KQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                       .......+......+..+.++++++||++|+|+++++..|.....
T Consensus       628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence             000000000001112234578999999999999999998865443

>PRK13768 GTPase; Provisional

Probab=99.59  E-value=4.6e-15  Score=106.54  Aligned_cols=127  Identities=17%  Similarity=0.148  Sum_probs=74.6

Q ss_pred             EEEEEeCCCCCcc---cccccccC---CC--CCEEEEEEECCChhhhhchh-hhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         54 ELALWDTAGQEDY---DRLRPLSY---PD--TDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        54 ~~~l~D~~g~~~~---~~~~~~~~---~~--~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      .+.+||+||+.+.   +..+..++   ..  .+++++++|+.......... ..|+........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            6899999997553   22322222   22  79999999996543222221 1233322212237999999999999876


Q ss_pred             ccchhhhhhccC----------CCC-CHHHHHHH---HHHcC-CceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        125 PNTIKELNKMKQ----------EPV-KPEEGRAM---AQKIN-AFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       125 ~~~~~~~~~~~~----------~~~-~~~~~~~~---~~~~~-~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      .........+..          ..- .....+++   .+..+ ..+++++|+++++|+++++++|.+.+..
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            554332222111          000 00111112   22222 3478999999999999999999887753

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.58  E-value=4.4e-14  Score=105.73  Aligned_cols=164  Identities=18%  Similarity=0.164  Sum_probs=113.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC--CCCcc-------------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ--FPEVY-------------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL   69 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   69 (192)
                      =-+|+|+.+...|||||+.+|+.+.  |.+..             ...+.+...+...+.+.++.+.++|||||.+|.-.
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            3589999999999999999998754  22211             00111222233345667789999999999999999


Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH-
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA-  148 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (192)
                      ....+.-.|++++++|+.+.---+.  .....-...  .+.+.|||+||+|...+.+..          +-+ +...+. 
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~----------Vvd-~vfDLf~  149 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARPDE----------VVD-EVFDLFV  149 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCHHH----------HHH-HHHHHHH
Confidence            9999999999999999988522111  122222222  278889999999998765421          111 111221 


Q ss_pred             ------HHcCCceEEEeccCCc----------CCHHHHHHHHHHHHhhhccc
Q psy14754        149 ------QKINAFAYLECSAKSK----------EGVREVFETATRAALQVKKK  184 (192)
Q Consensus       149 ------~~~~~~~~~~~Sa~~~----------~gi~~~~~~i~~~~~~~~~~  184 (192)
                            +++. +|++..|+..|          .++..+|+.|.+++..+...
T Consensus       150 ~L~A~deQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~  200 (603)
T COG1217         150 ELGATDEQLD-FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD  200 (603)
T ss_pred             HhCCChhhCC-CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC
Confidence                  2344 79999998877          47899999999999887643

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.57  E-value=1.7e-14  Score=102.99  Aligned_cols=123  Identities=11%  Similarity=0.048  Sum_probs=74.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc---c-------ccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR---L-------RPL   72 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~-------~~~   72 (192)
                      ..+++|+++|.+|+|||||+|+|++...........++...........+..+.+|||||..+...   .       ...
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~  108 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR  108 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence            357999999999999999999999976543321111111111222233456789999999654311   0       111


Q ss_pred             cC--CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCCcc
Q psy14754         73 SY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        73 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~  126 (192)
                      ++  ...+++++|..++.. .+.......++.+...+.   -.++++|.||+|...+..
T Consensus       109 ~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         109 YLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            22  246888888766542 233333345555554332   257999999999976544

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>smart00275 G_alpha G protein alpha subunit

Probab=99.57  E-value=3.9e-14  Score=105.70  Aligned_cols=133  Identities=17%  Similarity=0.216  Sum_probs=89.9

Q ss_pred             CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh----------hhhchhhhhHHHHhh-hCCCCcEEEEeec
Q psy14754         50 SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKH-FCPNVPIILVGNK  118 (192)
Q Consensus        50 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~-~~~~~p~ivv~nK  118 (192)
                      .++..+.+||++|+...+..|.+++.+++++|+|+|+++.+          .+......|...+.. .+.+.|++|++||
T Consensus       181 ~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK  260 (342)
T smart00275      181 VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK  260 (342)
T ss_pred             ECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence            34567899999999999999999999999999999999742          344443344444432 3468999999999


Q ss_pred             ccccCCccchhhhhhccCCC---CCHHHHHHHH-----HHcC-----CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        119 KDLRNDPNTIKELNKMKQEP---VKPEEGRAMA-----QKIN-----AFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       119 ~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~-----~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .|+....-....+...-+..   .....+..+.     ....     .+..+.++|.+..++..+|+.+...+....
T Consensus       261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            99976443322222221111   1233333322     1111     234567899999999999999888887664

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.55  E-value=7.9e-15  Score=119.26  Aligned_cols=115  Identities=20%  Similarity=0.093  Sum_probs=78.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC---------------CCCc---ccCceeeee-eEEEEECCeEEEEEEEeCCCCCc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ---------------FPEV---YVPTVFENY-VADIEVDSKQVELALWDTAGQED   65 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~   65 (192)
                      -.+|+++|+.++|||||+++|+...               +...   +..+..... .....++..++.+.+|||||+.+
T Consensus        19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~   98 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD   98 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence            4699999999999999999997531               1110   000111111 11223566778999999999999


Q ss_pred             ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      |.......++.+|++|+|+|+.+.-..+.  ...+.....  .+.|.++++||+|...
T Consensus        99 f~~~~~~al~~aD~~llVvda~~g~~~~t--~~~~~~~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQT--ETVLRQALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cHHHHHHHHHhcCEEEEEEecCCCCCccH--HHHHHHHHH--cCCCEEEEEEChhccc
Confidence            88777788899999999999987522221  222333222  2688999999999865

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.55  E-value=4.3e-14  Score=102.56  Aligned_cols=119  Identities=12%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcc--cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc-------ccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR-------PLS   73 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~   73 (192)
                      ...++|+++|.+|+||||++|++++.......  .+.+.......  ....+..+.++||||..+.....       ..+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~--~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS--RTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE--EEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            35789999999999999999999987653321  11111111111  12245789999999965432111       111


Q ss_pred             --CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCC
Q psy14754         74 --YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND  124 (192)
Q Consensus        74 --~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~  124 (192)
                        -...|++++|..++.. .+.......+..+...+.   -.++||++|+.|..++
T Consensus       114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence              1258999999665432 233333344444444332   3679999999997653

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.53  E-value=7.8e-14  Score=97.87  Aligned_cols=168  Identities=15%  Similarity=0.139  Sum_probs=93.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCccc-CceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-------c----ccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-PTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-------R----PLS   73 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~----~~~   73 (192)
                      ++|+++|..||||||++|.+++........ ....+...........+..+.++||||..+....       .    ...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            589999999999999999999987644321 1111222211122233467899999994322110       0    113


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      ..+.+++|+|+....   +.......+..+...+.   -..++||.|..|...+....+.+..     ......+++.+.
T Consensus        81 ~~g~ha~llVi~~~r---~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~-----~~~~~l~~li~~  152 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGR---FTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKK-----ESNEALQELIEK  152 (212)
T ss_dssp             TT-ESEEEEEEETTB----SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHH-----HHHHHHHHHHHH
T ss_pred             cCCCeEEEEEEecCc---chHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhc-----cCchhHhHHhhh
Confidence            457899999999883   33322333333333222   2578999999998775442111110     002234566666


Q ss_pred             cCCceEEEeccC------CcCCHHHHHHHHHHHHhhhc
Q psy14754        151 INAFAYLECSAK------SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       151 ~~~~~~~~~Sa~------~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .+. .|+..+..      ....+.+|++.|-+.+.+..
T Consensus       153 c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  153 CGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             TTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            664 45555554      33567888888777766654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1532|consensus

Probab=99.52  E-value=3.4e-14  Score=99.77  Aligned_cols=132  Identities=13%  Similarity=0.165  Sum_probs=77.2

Q ss_pred             eEEEEEEEeCCCCCcc------cccccccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccc
Q psy14754         51 KQVELALWDTAGQEDY------DRLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDL  121 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~------~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~  121 (192)
                      ......++|||||-.-      .......+.  ...++++++|.....+-.......+....-. .-..|.|++.||+|+
T Consensus       114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV  193 (366)
T ss_pred             cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence            3356899999997541      111111222  2455667777644322221112222222211 127999999999999


Q ss_pred             cCCccchhhhhhccCCCC-------------CHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        122 RNDPNTIKELNKMKQEPV-------------KPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .......+.+.++.....             .......+.+.+..+..+.+|+.+|.|.+++|..+.+.+-+..
T Consensus       194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~  267 (366)
T KOG1532|consen  194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE  267 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence            887766655433222111             1112223344455567899999999999999999988877764

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.52  E-value=1.8e-13  Score=105.20  Aligned_cols=173  Identities=16%  Similarity=0.280  Sum_probs=112.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EE--EECCeEEEEEEEeCCCCCcccccccccCCC----C
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DI--EVDSKQVELALWDTAGQEDYDRLRPLSYPD----T   77 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~   77 (192)
                      +-.|+|+|..++|||||+.+|.+..-   +.++.+-.|.. .+  ........+.+|-+.|...+..+....+..    -
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            46899999999999999999876432   22232222211 11  112234578999999877777666655543    3


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHh-------------------------hhC-------------------------
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVK-------------------------HFC-------------------------  107 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~-------------------------~~~-------------------------  107 (192)
                      -.+|+|+|.+.|+.+-.-.+.|+..++                         .+.                         
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            568889999999765433333322111                         000                         


Q ss_pred             -------------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHH
Q psy14754        108 -------------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETA  174 (192)
Q Consensus       108 -------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  174 (192)
                                   -++|++||++|+|.....+....+.+. ....-....+.+|-.+++ .+|.+|++...+++.++.+|
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e-~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEE-HFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchh-hHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHH
Confidence                         036999999999987633322211111 011234567788999995 88999999999999999999


Q ss_pred             HHHHhhhc
Q psy14754        175 TRAALQVK  182 (192)
Q Consensus       175 ~~~~~~~~  182 (192)
                      .+.++...
T Consensus       260 ~h~l~~~~  267 (472)
T PF05783_consen  260 LHRLYGFP  267 (472)
T ss_pred             HHHhccCC
Confidence            99887754

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.52  E-value=1.9e-13  Score=100.98  Aligned_cols=108  Identities=20%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy14754         51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE  130 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  130 (192)
                      .++.+.++||+|...-...   ....+|.++++.+...++.++......+        ...-++|+||+|+.........
T Consensus       147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~--------E~aDIiVVNKaDl~~~~~a~~~  215 (332)
T PRK09435        147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIM--------ELADLIVINKADGDNKTAARRA  215 (332)
T ss_pred             cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhh--------hhhheEEeehhcccchhHHHHH
Confidence            3467899999996532221   4567999999987666665655432111        2234899999998764321111


Q ss_pred             hhhccCCCCCHHHHHHHHHH------cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        131 LNKMKQEPVKPEEGRAMAQK------INAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      .          .+.......      ....|++.+||+++.|++++++.|.+++.
T Consensus       216 ~----------~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        216 A----------AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             H----------HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            1          111111111      01148999999999999999999998764

>TIGR00101 ureG urease accessory protein UreG

Probab=99.50  E-value=7.1e-13  Score=91.90  Aligned_cols=104  Identities=21%  Similarity=0.258  Sum_probs=63.1

Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhh
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELN  132 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  132 (192)
                      ....++++.|..-......   .-++.++.|+|+.+.++...   .....+     ...-++++||+|+.+...      
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~qi-----~~ad~~~~~k~d~~~~~~------  154 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGPGI-----TRSDLLVINKIDLAPMVG------  154 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHhHh-----hhccEEEEEhhhcccccc------
Confidence            4566778877321111111   12688999999998655321   111111     233489999999975211      


Q ss_pred             hccCCCCCHHHHHHHHHH-cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        133 KMKQEPVKPEEGRAMAQK-INAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                            ...+...+..+. .+..+++++||++|+|++++++++.++..
T Consensus       155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence                  112222222222 34478999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0082|consensus

Probab=99.50  E-value=1.3e-13  Score=101.26  Aligned_cols=137  Identities=22%  Similarity=0.242  Sum_probs=92.0

Q ss_pred             EECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhh------HHHHh-----hhCCCCcEEEE
Q psy14754         47 EVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW------TPEVK-----HFCPNVPIILV  115 (192)
Q Consensus        47 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~-----~~~~~~p~ivv  115 (192)
                      .+...+..+.++|+|||..-+..|.+++.+++++|+|+++++.+....-.+.-      +.++.     +++.+.++|++
T Consensus       189 ~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLF  268 (354)
T KOG0082|consen  189 EFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILF  268 (354)
T ss_pred             EEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEE
Confidence            44455678999999999999999999999999999999999875433222111      11121     34568999999


Q ss_pred             eecccccCCccchhhh----hhccCCCCCHHHHHHHH-----HHc----CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        116 GNKKDLRNDPNTIKEL----NKMKQEPVKPEEGRAMA-----QKI----NAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       116 ~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +||.|+....-.....    .+.... ...+++..+.     +-+    ..+.+..+.|.+..+|+.+|+.+.+.+....
T Consensus       269 LNK~DLFeEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  269 LNKKDLFEEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             eecHHHHHHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            9999998754432222    112222 2333443332     111    1134456899999999999999999888765


Q ss_pred             cc
Q psy14754        183 KK  184 (192)
Q Consensus       183 ~~  184 (192)
                      -+
T Consensus       348 lk  349 (354)
T KOG0082|consen  348 LK  349 (354)
T ss_pred             HH
Confidence            44

>KOG1144|consensus

Probab=99.49  E-value=2e-13  Score=107.17  Aligned_cols=176  Identities=19%  Similarity=0.157  Sum_probs=109.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEE-------------E----CCeEEEEEEEeCCCCCcc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-------------V----DSKQVELALWDTAGQEDY   66 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-------------~----~~~~~~~~l~D~~g~~~~   66 (192)
                      +..=|+|+|+..+|||-|+..+-+..+......+++..+...+.             -    ...---+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            34558999999999999999998765544322222211111100             0    011124789999999999


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC------CccchhhhhhccCCCCC
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN------DPNTIKELNKMKQEPVK  140 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------~~~~~~~~~~~~~~~~~  140 (192)
                      ..+.......||++|+|+|+..+-.-+.+  .-+.+++..  +.|+||.+||+|..-      +.+....+.......+.
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            99999999999999999999876333332  233444443  899999999999852      11112222111111100


Q ss_pred             ------HHHHHHHHHH-------cC------CceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        141 ------PEEGRAMAQK-------IN------AFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       141 ------~~~~~~~~~~-------~~------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                            .....+|+.+       +.      -+.++++||..|+||-.|+.+|+........
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~  691 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV  691 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence                  0111122221       11      1467899999999999999999888776643

>PTZ00416 elongation factor 2; Provisional

Probab=99.49  E-value=7.2e-14  Score=115.18  Aligned_cols=114  Identities=13%  Similarity=0.047  Sum_probs=77.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce---------------eeee--eEEEEEC--------CeEEEEEEEe
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---------------FENY--VADIEVD--------SKQVELALWD   59 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---------------~~~~--~~~~~~~--------~~~~~~~l~D   59 (192)
                      -.+|+++|+.++|||||+++|+...-........               .+..  ...+.+.        ..+..+.++|
T Consensus        19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD   98 (836)
T PTZ00416         19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID   98 (836)
T ss_pred             cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence            3499999999999999999998632111000000               0000  0111222        2256799999


Q ss_pred             CCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      |||+.+|.......++.+|++|+|+|+.++-..+  .+..+..+...  +.|+++++||+|+.
T Consensus        99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~--t~~~~~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ--TETVLRQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc--HHHHHHHHHHc--CCCEEEEEEChhhh
Confidence            9999998888888889999999999998863222  23444444433  68999999999997

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.48  E-value=2e-13  Score=111.41  Aligned_cols=115  Identities=17%  Similarity=0.027  Sum_probs=76.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCccc-C---c-----------eeeee--eEEE--EECCeEEEEEEEeCCCCCc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYV-P---T-----------VFENY--VADI--EVDSKQVELALWDTAGQED   65 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~---~-----------~~~~~--~~~~--~~~~~~~~~~l~D~~g~~~   65 (192)
                      -.+|+++|+.++|||||+.+|+...-..... .   .           ..+..  ...+  ....++..+.++||||+.+
T Consensus        20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d   99 (731)
T PRK07560         20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD   99 (731)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence            3479999999999999999997632111000 0   0           00000  0011  2244567899999999999


Q ss_pred             ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      |.......++.+|++|+|+|+...-..+  .+..+......  +.|.|+++||+|...
T Consensus       100 f~~~~~~~l~~~D~avlVvda~~g~~~~--t~~~~~~~~~~--~~~~iv~iNK~D~~~  153 (731)
T PRK07560        100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQ--TETVLRQALRE--RVKPVLFINKVDRLI  153 (731)
T ss_pred             hHHHHHHHHHhcCEEEEEEECCCCCCcc--HHHHHHHHHHc--CCCeEEEEECchhhc
Confidence            8877778888999999999988753222  22333333322  678899999999874

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.48  E-value=8.2e-14  Score=115.02  Aligned_cols=114  Identities=14%  Similarity=0.047  Sum_probs=77.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc---------------eeeee--eEEEEE--------------CCeEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT---------------VFENY--VADIEV--------------DSKQV   53 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~--~~~~~~--------------~~~~~   53 (192)
                      -.+|+|+|+.++|||||+++|+...-.......               ..+..  ...+.+              ...+.
T Consensus        19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (843)
T PLN00116         19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY   98 (843)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence            458999999999999999999864321000000               00000  011112              12367


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      .+.++|||||.+|.......++.+|++|+|+|+.++-..+.  +..+..+...  +.|+++++||+|..
T Consensus        99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t--~~~~~~~~~~--~~p~i~~iNK~D~~  163 (843)
T PLN00116         99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQALGE--RIRPVLTVNKMDRC  163 (843)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH--HHHHHHHHHC--CCCEEEEEECCccc
Confidence            78999999999998888888899999999999997643332  2333333333  79999999999997

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.48  E-value=8.1e-15  Score=104.05  Aligned_cols=124  Identities=15%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             EEEEEeCCCCCccccccccc------C--CCCCEEEEEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCC
Q psy14754         54 ELALWDTAGQEDYDRLRPLS------Y--PDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~------~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~  124 (192)
                      .+.++|||||.++...+...      +  ...-++++++|..-..+.......++..+.. ..-+.|.|.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            68999999987754433222      1  3456778888876433222222222222111 1127999999999999873


Q ss_pred             cc--chhhhhh------ccCCCCCHHHHHHHHH---HcCCc-eEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        125 PN--TIKELNK------MKQEPVKPEEGRAMAQ---KINAF-AYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       125 ~~--~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~-~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ..  ..+...+      ..... ......++++   .++.. .++++|+.+++|+++++..+.+++
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~-~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESD-YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT--HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            31  1111100      00000 1111223333   33444 789999999999999999988765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01882 BMS1 Bms1

Probab=99.47  E-value=3.1e-13  Score=95.60  Aligned_cols=142  Identities=13%  Similarity=0.068  Sum_probs=83.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .+..|+++|++|+|||||++.+.+...........+. .  .+ ....+..+.++||||..  . ......+.+|+++++
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvVllv  110 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLVLLL  110 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--H-HHHHHHHhcCEEEEE
Confidence            3567999999999999999999875321111111111 1  11 12245678999999853  1 122345789999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEE-EEeecccccCCccchhhhhhccCCCCCHHHHHH-HH-HHcCCceEEEec
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MA-QKINAFAYLECS  160 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~S  160 (192)
                      +|++.....  ....++..+...  +.|.+ +|+||+|+..+......        . ....+. +. ......+++.+|
T Consensus       111 iDa~~~~~~--~~~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~--------~-~~~l~~~~~~~~~~~~ki~~iS  177 (225)
T cd01882         111 IDASFGFEM--ETFEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRK--------T-KKRLKHRFWTEVYQGAKLFYLS  177 (225)
T ss_pred             EecCcCCCH--HHHHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHH--------H-HHHHHHHHHHhhCCCCcEEEEe
Confidence            999764322  223455555443  67854 59999998753211100        0 111211 22 223346899999


Q ss_pred             cCCcC
Q psy14754        161 AKSKE  165 (192)
Q Consensus       161 a~~~~  165 (192)
                      |+++-
T Consensus       178 a~~~~  182 (225)
T cd01882         178 GIVHG  182 (225)
T ss_pred             eccCC
Confidence            99874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.2e-13  Score=97.73  Aligned_cols=168  Identities=17%  Similarity=0.130  Sum_probs=107.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc---cCce----------------e---eeeeE--EEEEC----CeEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY---VPTV----------------F---ENYVA--DIEVD----SKQVEL   55 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~----------------~---~~~~~--~~~~~----~~~~~~   55 (192)
                      -+++|.++|+..-|||||+.+|.+--....+   ....                +   ..+..  .+...    .-...+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            3789999999999999999999872211000   0000                0   00000  00000    112468


Q ss_pred             EEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc
Q psy14754         56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK  135 (192)
Q Consensus        56 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  135 (192)
                      .++|.|||+-.-....+-..-+|++++|++++.+..-....+.+..+ . ...-..+||+-||+|+.......+      
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-e-Iigik~iiIvQNKIDlV~~E~AlE------  160 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-E-IIGIKNIIIVQNKIDLVSRERALE------  160 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-h-hhccceEEEEecccceecHHHHHH------
Confidence            99999999877666555556789999999998864433333333221 1 112478899999999987322221      


Q ss_pred             CCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        136 QEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       136 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                          .+++..+|.+.-  ...|++++||..+.||+.+++.|.+.+-.+.+
T Consensus       161 ----~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         161 ----NYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             ----HHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence                223344444322  23699999999999999999999999988765

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.46  E-value=4.4e-13  Score=97.29  Aligned_cols=154  Identities=16%  Similarity=0.096  Sum_probs=98.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC----------ccc--Cce-------------------e-eeeeEEEEECCe
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE----------VYV--PTV-------------------F-ENYVADIEVDSK   51 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------~~~--~~~-------------------~-~~~~~~~~~~~~   51 (192)
                      ..+|.+-+|...-|||||+-+|+...-..          .+.  .+.                   + +....-..+.-.
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            46899999999999999999987643210          000  000                   0 000111123345


Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL  131 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  131 (192)
                      ..+|.+-|||||+.|......-...||++|+++|+...---+.-.+.++   .....-..+++.+||+||.+..+..-  
T Consensus        85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I---~sLLGIrhvvvAVNKmDLvdy~e~~F--  159 (431)
T COG2895          85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFI---ASLLGIRHVVVAVNKMDLVDYSEEVF--  159 (431)
T ss_pred             cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHH---HHHhCCcEEEEEEeeecccccCHHHH--
Confidence            6689999999999998877777788999999999965421111111222   22222478899999999988533110  


Q ss_pred             hhccCCCCCHHHHHHHHHHcCC--ceEEEeccCCcCCHH
Q psy14754        132 NKMKQEPVKPEEGRAMAQKINA--FAYLECSAKSKEGVR  168 (192)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  168 (192)
                            ..-..+...|+.+++.  ..++++||+.|+|+-
T Consensus       160 ------~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 ------EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             ------HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                  0112334457777764  468999999999874

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=3.2e-13  Score=100.50  Aligned_cols=117  Identities=20%  Similarity=0.191  Sum_probs=85.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh--CCCCCc--------c-----------cCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK--DQFPEV--------Y-----------VPTVFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      ++-..+|+-+|.+|||||-.+|+-  +.....        .           ...+....+..+.+++.+..+.+.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            456789999999999999999763  111100        0           0011122233457788889999999999


Q ss_pred             CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      |++|..-+-..+..+|.+++|+|+..+  ++.....+....+-.  ++|++-++||.|...-
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrlR--~iPI~TFiNKlDR~~r  148 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRLR--DIPIFTFINKLDREGR  148 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhhc--CCceEEEeeccccccC
Confidence            999999888888999999999999876  443333566665544  8999999999998653

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.42  E-value=3.4e-12  Score=89.34  Aligned_cols=150  Identities=17%  Similarity=0.103  Sum_probs=82.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcc------cC--ceeeee-----eEEEEE--------------------CCe
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY------VP--TVFENY-----VADIEV--------------------DSK   51 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~--~~~~~~-----~~~~~~--------------------~~~   51 (192)
                      ...|+++|+.|||||||+++++........      ..  ......     ...+..                    ...
T Consensus        22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~  101 (207)
T TIGR00073        22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD  101 (207)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence            567899999999999999998764110000      00  000000     000000                    011


Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL  131 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  131 (192)
                      ...+.++++.|.-....   .+....+..+.++|+.+.+....   .....     ...|.++++||+|+.+...     
T Consensus       102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~---~~~~~-----~~~a~iiv~NK~Dl~~~~~-----  165 (207)
T TIGR00073       102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL---KYPGM-----FKEADLIVINKADLAEAVG-----  165 (207)
T ss_pred             CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh---hhHhH-----HhhCCEEEEEHHHccccch-----
Confidence            23567788877211111   11123455667888775432111   11111     1578899999999965211     


Q ss_pred             hhccCCCCCHHHHHHH-HHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        132 NKMKQEPVKPEEGRAM-AQKINAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       132 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                             ....+..+. .+..+..+++++||++++|++++++++.+.
T Consensus       166 -------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       166 -------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             -------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                   111222222 222334689999999999999999999774

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.42  E-value=1.8e-12  Score=87.15  Aligned_cols=150  Identities=20%  Similarity=0.204  Sum_probs=86.1

Q ss_pred             cc-eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee---------------EEEEE-------------------
Q psy14754          4 IR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV---------------ADIEV-------------------   48 (192)
Q Consensus         4 ~~-~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------~~~~~-------------------   48 (192)
                      ++ ++|.|.|++|||||+|+.+++..-..+ +.....+...               +.+..                   
T Consensus        11 ~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~   89 (202)
T COG0378          11 RPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE   89 (202)
T ss_pred             CceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence            45 799999999999999998876532211 1111100000               00000                   


Q ss_pred             ---CCeEEEEEEEeCCCCCcccccccccCC-CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         49 ---DSKQVELALWDTAGQEDYDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        49 ---~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                         ......+.+++..|  ...  .+.... ..+.-|+|+|++.++....   .-.+.+     -..-++|+||.|+.+.
T Consensus        90 l~~~~~~~Dll~iEs~G--NL~--~~~sp~L~d~~~v~VidvteGe~~P~---K~gP~i-----~~aDllVInK~DLa~~  157 (202)
T COG0378          90 LVLDFPDLDLLFIESVG--NLV--CPFSPDLGDHLRVVVIDVTEGEDIPR---KGGPGI-----FKADLLVINKTDLAPY  157 (202)
T ss_pred             HhhcCCcCCEEEEecCc--cee--cccCcchhhceEEEEEECCCCCCCcc---cCCCce-----eEeeEEEEehHHhHHH
Confidence               01113556666666  111  111112 2348899999988643211   101111     1245899999999884


Q ss_pred             ccchhhhhhccCCCCCHHH-HHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        125 PNTIKELNKMKQEPVKPEE-GRAMAQKINAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ..            ...+. .+...+..+..|++++|+++|+|++++++++....
T Consensus       158 v~------------~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         158 VG------------ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             hC------------ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            32            22233 33344556668999999999999999999987654

>KOG0458|consensus

Probab=99.42  E-value=2.6e-12  Score=98.64  Aligned_cols=156  Identities=17%  Similarity=0.165  Sum_probs=97.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC----------------------CCCcc--------cCceeeeeeEEEEECCeEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ----------------------FPEVY--------VPTVFENYVADIEVDSKQV   53 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~----------------------~~~~~--------~~~~~~~~~~~~~~~~~~~   53 (192)
                      -.+..+++|+..+|||||+-+++..-                      +....        ...+.+-......++....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            36789999999999999998876511                      00000        0011112223345566677


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhch------hhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI------PEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                      .+++.|.|||.+|-.........+|++++|+|++.. .|+.-      .......+ +...-..+||++||+|+.+=.. 
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~ll-r~Lgi~qlivaiNKmD~V~Wsq-  332 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLL-RSLGISQLIVAINKMDLVSWSQ-  332 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHH-HHcCcceEEEEeecccccCccH-
Confidence            899999999999999888888999999999999864 23221      11122222 2233567899999999976211 


Q ss_pred             hhhhhhccCCCCCHHHHHHHH-HHcC----CceEEEeccCCcCCHHH
Q psy14754        128 IKELNKMKQEPVKPEEGRAMA-QKIN----AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~Sa~~~~gi~~  169 (192)
                       +.+..     + ......|. +..+    .+.|+++|+..|+|+-.
T Consensus       333 -~RF~e-----I-k~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  333 -DRFEE-----I-KNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             -HHHHH-----H-HHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence             11100     0 11122232 2222    25799999999999743

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.42  E-value=4.9e-12  Score=94.55  Aligned_cols=155  Identities=14%  Similarity=0.166  Sum_probs=92.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC----CCC-------------CcccC---ceeeeee---EEEEE---CCeEEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD----QFP-------------EVYVP---TVFENYV---ADIEV---DSKQVELALW   58 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~----~~~-------------~~~~~---~~~~~~~---~~~~~---~~~~~~~~l~   58 (192)
                      ++-|+|+|+.++|||||+|+|++.    ...             .....   ++++...   ..+.+   ++-...+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            578999999999999999999987    322             11011   1111111   12222   3445789999


Q ss_pred             eCCCCCccc--------c-----------c----------ccccCC-CCCEEEEEE-ECC----ChhhhhchhhhhHHHH
Q psy14754         59 DTAGQEDYD--------R-----------L----------RPLSYP-DTDVILMCF-SID----SPDSLENIPEKWTPEV  103 (192)
Q Consensus        59 D~~g~~~~~--------~-----------~----------~~~~~~-~~~~~i~v~-d~~----~~~~~~~~~~~~~~~~  103 (192)
                      ||+|-..-.        .           .          +...+. .+++.|+|. |.+    .++.+....+.+...+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            999932211        0           0          112233 789999887 653    1234566666788888


Q ss_pred             hhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC--CcCCHHHHHHHHHH
Q psy14754        104 KHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK--SKEGVREVFETATR  176 (192)
Q Consensus       104 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i~~  176 (192)
                      +..  ++|+++++||.|-..+              .......++.+.++ .|++.+|+.  +.+.|..+++.+..
T Consensus       177 k~~--~kPfiivlN~~dp~~~--------------et~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       177 KEL--NKPFIILLNSTHPYHP--------------ETEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             Hhc--CCCEEEEEECcCCCCc--------------hhHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHHh
Confidence            876  8999999999994321              12222335555566 466666554  34445555554443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.41  E-value=1.6e-13  Score=102.08  Aligned_cols=170  Identities=14%  Similarity=0.127  Sum_probs=83.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCce---eeeeeEEEEECCeEEEEEEEeCCCCCccccc-----cccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTV---FENYVADIEVDSKQVELALWDTAGQEDYDRL-----RPLS   73 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~   73 (192)
                      ..+++|+|+|.+|+|||||+|+|.+-...+.. -+++   ++.....+.. -..-.+.+||+||.......     ...-
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            46899999999999999999999764332211 1111   1111111111 12225899999994221111     1223


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCC----HHHHHHHHH
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVK----PEEGRAMAQ  149 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  149 (192)
                      +...|.+|++.+  ++  |....-.+...+.+.  ++|+.+|-||+|..-..+.     ...++...    .++.++.+.
T Consensus       112 ~~~yD~fiii~s--~r--f~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~-----~~~p~~f~~e~~L~~IR~~c~  180 (376)
T PF05049_consen  112 FYRYDFFIIISS--ER--FTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNER-----RRKPRTFNEEKLLQEIRENCL  180 (376)
T ss_dssp             GGG-SEEEEEES--SS----HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHH-----CC-STT--HHTHHHHHHHHHH
T ss_pred             ccccCEEEEEeC--CC--CchhhHHHHHHHHHc--CCcEEEEEecccccHhhhh-----ccCCcccCHHHHHHHHHHHHH
Confidence            456798777654  22  433333455666666  8999999999996211110     00111111    223333322


Q ss_pred             H------cCCceEEEeccCCc--CCHHHHHHHHHHHHhhhccc
Q psy14754        150 K------INAFAYLECSAKSK--EGVREVFETATRAALQVKKK  184 (192)
Q Consensus       150 ~------~~~~~~~~~Sa~~~--~gi~~~~~~i~~~~~~~~~~  184 (192)
                      .      ....++|-+|+.+-  .+...+.+.+.+.+...++.
T Consensus       181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence            1      12246888998864  45778888888888877653

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=8.9e-13  Score=105.63  Aligned_cols=119  Identities=21%  Similarity=0.087  Sum_probs=84.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC--CCC---cc------------cCceeeeeeEEEEECCe-EEEEEEEeCCCCCc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPE---VY------------VPTVFENYVADIEVDSK-QVELALWDTAGQED   65 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~---~~------------~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~   65 (192)
                      .-.+|.|+|+..+|||||..+++...  ...   ..            ...+.+..........+ ...+.++|||||-+
T Consensus         9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD   88 (697)
T COG0480           9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD   88 (697)
T ss_pred             cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence            45689999999999999999987522  110   00            00011111222233344 48899999999999


Q ss_pred             ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754         66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  126 (192)
                      |.......++.+|++++|+|+...-  +...+..+....++  ++|.++++||+|....+.
T Consensus        89 Ft~EV~rslrvlDgavvVvdaveGV--~~QTEtv~rqa~~~--~vp~i~fiNKmDR~~a~~  145 (697)
T COG0480          89 FTIEVERSLRVLDGAVVVVDAVEGV--EPQTETVWRQADKY--GVPRILFVNKMDRLGADF  145 (697)
T ss_pred             cHHHHHHHHHhhcceEEEEECCCCe--eecHHHHHHHHhhc--CCCeEEEEECccccccCh
Confidence            9999999999999999999999873  33334555555554  899999999999976443

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.3e-12  Score=97.59  Aligned_cols=158  Identities=13%  Similarity=0.040  Sum_probs=104.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      -|+-.|+..-|||||+.++.+..-...   ....++... .-...+.++..+.++|.||++++-+.....+...|.+++|
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDl-g~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv   80 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDL-GFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV   80 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEee-eeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence            477889999999999999988653322   122222111 1112344455899999999999988877788889999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ++.++.-..+..  ..+..+.-. .....+||+||+|..++....         ....+-...+.  +.+.++|.+|+.+
T Consensus        81 V~~deGl~~qtg--EhL~iLdll-gi~~giivltk~D~~d~~r~e---------~~i~~Il~~l~--l~~~~i~~~s~~~  146 (447)
T COG3276          81 VAADEGLMAQTG--EHLLILDLL-GIKNGIIVLTKADRVDEARIE---------QKIKQILADLS--LANAKIFKTSAKT  146 (447)
T ss_pred             EeCccCcchhhH--HHHHHHHhc-CCCceEEEEeccccccHHHHH---------HHHHHHHhhcc--ccccccccccccc
Confidence            999765322222  222222222 235569999999987642110         01111111122  4556889999999


Q ss_pred             cCCHHHHHHHHHHHHh
Q psy14754        164 KEGVREVFETATRAAL  179 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~  179 (192)
                      |+||+++.+.|.....
T Consensus       147 g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         147 GRGIEELKNELIDLLE  162 (447)
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999999885

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.39  E-value=1.8e-12  Score=92.78  Aligned_cols=96  Identities=26%  Similarity=0.378  Sum_probs=73.3

Q ss_pred             CcccccccccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHH
Q psy14754         64 EDYDRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPE  142 (192)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  142 (192)
                      +++..+.+.++.++|.+++|+|+.++. ++..+ +.|+..+..  .+.|+++|+||+|+.+.            +....+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~------------~~~~~~   88 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDD------------EDMEKE   88 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCC------------HHHHHH
Confidence            567777778899999999999999887 77777 477776654  48999999999999652            112223


Q ss_pred             HHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754        143 EGRAMAQKINAFAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus       143 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      +...+. ..+ ++++++||+++.|++++|+.+..
T Consensus        89 ~~~~~~-~~g-~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        89 QLDIYR-NIG-YQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHHHHH-HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence            333343 345 68999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PTZ00258 GTP-binding protein; Provisional

Probab=99.38  E-value=1.5e-11  Score=92.69  Aligned_cols=84  Identities=20%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCe---------------EEEEEEEeCCCCCccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSK---------------QVELALWDTAGQEDYD   67 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~~l~D~~g~~~~~   67 (192)
                      ..++|+++|.||+|||||+|+|.+........|.++..... .+...+.               ...+.++|+||...-.
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            46799999999999999999998876544333443322211 1222211               2358999999954321


Q ss_pred             c-------cccccCCCCCEEEEEEECC
Q psy14754         68 R-------LRPLSYPDTDVILMCFSID   87 (192)
Q Consensus        68 ~-------~~~~~~~~~~~~i~v~d~~   87 (192)
                      +       .....++.+|++++|+|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1       1122457899999999984

>KOG1707|consensus

Probab=99.37  E-value=2.3e-11  Score=93.55  Aligned_cols=163  Identities=23%  Similarity=0.305  Sum_probs=114.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +.-+++.++|+.++|||.+++.++++.+......+....+ ...+...+....+.+.|.+-. ........- ..+|.+.
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            3568899999999999999999999888775544444444 334444566667888888764 222222222 6789999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      ++||.+++.++......+......  ...|+++|++|+|+.+..          ++.....  .+++++++.-+.+.+|.
T Consensus       501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~----------Q~~~iqp--de~~~~~~i~~P~~~S~  566 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVP----------QRYSIQP--DEFCRQLGLPPPIHISS  566 (625)
T ss_pred             EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhh----------hccCCCh--HHHHHhcCCCCCeeecc
Confidence            999999999988775333222222  489999999999997743          1222222  68888888666677777


Q ss_pred             CCcCCHHHHHHHHHHHHhhhc
Q psy14754        162 KSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +.... .++|..|..++..++
T Consensus       567 ~~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  567 KTLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CCCCC-chHHHHHHHhhhCCC
Confidence            75333 899999988887766

>KOG3886|consensus

Probab=99.37  E-value=1.4e-12  Score=89.48  Aligned_cols=125  Identities=17%  Similarity=0.283  Sum_probs=85.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc-----cccccccCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDSKQVELALWDTAGQEDY-----DRLRPLSYPDT   77 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~~~~   77 (192)
                      ++-||+++|.+||||||+-..+..+...- ...++.+....+.-..-.++..+.+||++|++.+     .......+++.
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            56799999999999999887776544322 2122222222222122234578999999998753     33556788899


Q ss_pred             CEEEEEEECCChhhhhchh--hhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy14754         78 DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI  128 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  128 (192)
                      +++++|+|+...+--.++.  +.-++.+.++.|...+.+.++|+|+...+...
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~  135 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARE  135 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHH
Confidence            9999999998865333332  23445666777888899999999998866543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.35  E-value=1.5e-12  Score=88.18  Aligned_cols=63  Identities=21%  Similarity=0.245  Sum_probs=43.1

Q ss_pred             EEEEEeCCCCCc----ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecc
Q psy14754         54 ELALWDTAGQED----YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK  119 (192)
Q Consensus        54 ~~~l~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  119 (192)
                      .+.|+|+||...    ....+..+++.+|++|+|.++.....-... +.+.......  ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence            489999999533    234456677899999999999986443333 3555555544  44589999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.35  E-value=1.7e-11  Score=78.72  Aligned_cols=113  Identities=35%  Similarity=0.452  Sum_probs=77.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCccc-CceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-PTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|..|+|||+|+.++....+...+. ++..                          +........+.++.+++|+
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999998777754322 2211                          2233344567789999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      +..+.++++..   |...+.... .+.|.++++||.|+...            ........         .+++++|+++
T Consensus        55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~------------~~~~~~~~---------~~~~~~s~~~  110 (124)
T smart00010       55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEE------------RQVATEEG---------LEFAETSAKT  110 (124)
T ss_pred             EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhh------------CcCCHHHH---------HHHHHHhCCC
Confidence            99998887654   655554432 46889999999997442            12222222         2455688899


Q ss_pred             cCCHH
Q psy14754        164 KEGVR  168 (192)
Q Consensus       164 ~~gi~  168 (192)
                      +.|+.
T Consensus       111 ~~~~~  115 (124)
T smart00010      111 PEEGE  115 (124)
T ss_pred             cchhh
Confidence            99885

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1486|consensus

Probab=99.33  E-value=6.6e-11  Score=82.55  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=63.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCcc-------cccccccCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDY-------DRLRPLSYP   75 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~   75 (192)
                      -.-||+++|-|.+|||||+..+..-...... ..++-+...-  .+.+.+..+++.|.||.-.-       ........+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpG--vi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPG--VIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecc--eEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence            3568999999999999999999886654443 3333333322  33445667899999994332       233445677


Q ss_pred             CCCEEEEEEECCChhhhhchhh
Q psy14754         76 DTDVILMCFSIDSPDSLENIPE   97 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~   97 (192)
                      .+|.+++|+|++..+.-..+.+
T Consensus       139 taDlilMvLDatk~e~qr~~le  160 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILE  160 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHH
Confidence            8999999999998755443333

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.31  E-value=1.3e-11  Score=91.04  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=64.1

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL  131 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  131 (192)
                      ++.+.++||+|.-...   ......+|.++++......+.++...    ..+    .++|.++++||+|+..........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~~----~~l----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGIK----AGL----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHHH----HHH----hhhccEEEEEcccccchhHHHHHH
Confidence            5678999999843211   22456678888885444333332221    212    267889999999987643210000


Q ss_pred             hhccCCCCCHHHHHHHHH---HcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        132 NKMKQEPVKPEEGRAMAQ---KINAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      ..+      ......+..   .+. .+++++||+++.|++++++++.+...
T Consensus       195 ~~~------~~~l~~l~~~~~~~~-~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LML------ALALEEIRRREDGWR-PPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHH------HHHHhhccccccCCC-CCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            000      000001111   122 36899999999999999999988744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.30  E-value=1.3e-10  Score=84.51  Aligned_cols=119  Identities=18%  Similarity=0.207  Sum_probs=68.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc---c-------Cce-eeeeeEEEEECCeEEEEEEEeCCCCCccc-----
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY---V-------PTV-FENYVADIEVDSKQVELALWDTAGQEDYD-----   67 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~-------~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----   67 (192)
                      ..++|+|+|.+|+|||||+|.|++.......   .       .+. .......+.-++..+.+.++||||..+..     
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999986543321   0       011 11112233446677899999999922110     


Q ss_pred             ---------------------cc-ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         68 ---------------------RL-RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        68 ---------------------~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                                           .. ....=...|++|++++.+.. .+..++   +..+++....+++|-|+.|+|.....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D---i~~mk~Ls~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD---IEFMKRLSKRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH---HHHHHHHTTTSEEEEEESTGGGS-HH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH---HHHHHHhcccccEEeEEecccccCHH
Confidence                                 00 01111247899999987652 233332   23344444479999999999997744


Q ss_pred             c
Q psy14754        126 N  126 (192)
Q Consensus       126 ~  126 (192)
                      +
T Consensus       159 e  159 (281)
T PF00735_consen  159 E  159 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.29  E-value=4.2e-11  Score=91.50  Aligned_cols=128  Identities=19%  Similarity=0.214  Sum_probs=82.9

Q ss_pred             eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhh----------hhchhhhhHHHHh-hhCCCCcEEEEeecc
Q psy14754         51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS----------LENIPEKWTPEVK-HFCPNVPIILVGNKK  119 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~~~~~~~~~~~~-~~~~~~p~ivv~nK~  119 (192)
                      +...+.++|++|+...+..|.+++.+++++|||+++++.+.          +.+....|...+. ..+.+.|+||++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            45678999999999999999999999999999999987543          1111122223332 244689999999999


Q ss_pred             cccCCccchhh-hhhccCCC-----CCHHHHHHHHHH--------c---CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        120 DLRNDPNTIKE-LNKMKQEP-----VKPEEGRAMAQK--------I---NAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       120 D~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~--------~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      |+....-.... +....+..     -..+.+..+...        .   ..+.+..++|.+..++..+|+.+.+.+
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            99764333222 22222222     223444433321        1   223456799999999999999887643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=1e-11  Score=88.37  Aligned_cols=167  Identities=17%  Similarity=0.193  Sum_probs=107.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC----------C------CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ----------F------PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      ..++|..+|+.+-|||||..++...-          +      +.......+ .....+.++-.+..+-.+|+|||.+|-
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGIT-Intahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGIT-INTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCce-eccceeEEecCCceEEeccCCChHHHH
Confidence            46899999999999999998876411          0      111111111 122334555556677889999999988


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      .....-.-++|+.|+|+.+.+.-.-+... . +-+.+..  +.| +++++||+|+.++.+..+..         .-+.++
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrE-H-iLlarqv--Gvp~ivvflnK~Dmvdd~ellelV---------emEvre  156 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTRE-H-ILLARQV--GVPYIVVFLNKVDMVDDEELLELV---------EMEVRE  156 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchh-h-hhhhhhc--CCcEEEEEEecccccCcHHHHHHH---------HHHHHH
Confidence            77666667899999999999864333321 1 1122222  665 56888999999865543322         345566


Q ss_pred             HHHHcCC----ceEEEeccCCc-C-------CHHHHHHHHHHHHhhhccc
Q psy14754        147 MAQKINA----FAYLECSAKSK-E-------GVREVFETATRAALQVKKK  184 (192)
Q Consensus       147 ~~~~~~~----~~~~~~Sa~~~-~-------gi~~~~~~i~~~~~~~~~~  184 (192)
                      +...++.    .|++.-||+.. +       .|.+|++.+-..+..+.+.
T Consensus       157 LLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~  206 (394)
T COG0050         157 LLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD  206 (394)
T ss_pred             HHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence            6666642    47777777642 2       3577777777777666654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.27  E-value=2.4e-11  Score=85.64  Aligned_cols=107  Identities=18%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhh
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELN  132 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  132 (192)
                      +.+.+++|.|--.-.   .....-+|.+++|+...-.+.++.++.-+++.        .-++|+||.|..........+.
T Consensus       122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~~~~~~l~  190 (266)
T PF03308_consen  122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGADRTVRDLR  190 (266)
T ss_dssp             -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHHHHHHHHH
Confidence            467788887721111   12345689999999998888888887666655        3399999999655322111110


Q ss_pred             hccCCCCCHHHHHHHHHH---cCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        133 KMKQEPVKPEEGRAMAQK---INAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                                ....+...   ....|++.+||.++.|++++++.|.++...
T Consensus       191 ----------~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  191 ----------SMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             ----------HHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----------HHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                      00111111   011589999999999999999999876543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.26  E-value=1.2e-11  Score=88.29  Aligned_cols=115  Identities=17%  Similarity=0.126  Sum_probs=71.2

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL  131 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  131 (192)
                      ++.+.+++|.|--...   .....-+|.++++.-..-.+.++.++.-+++.        --++|+||.|..........+
T Consensus       143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a~r~l  211 (323)
T COG1703         143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKAAREL  211 (323)
T ss_pred             CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHHHHHH
Confidence            3567888888732211   12345679999998888788888776555543        349999999965532221111


Q ss_pred             hhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        132 NKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ........     ..+.......|++.+||.+|+|++++++.|.++.....
T Consensus       212 ~~al~~~~-----~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~  257 (323)
T COG1703         212 RSALDLLR-----EVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT  257 (323)
T ss_pred             HHHHHhhc-----ccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence            11000000     00111112258999999999999999999998876553

>KOG3887|consensus

Probab=99.26  E-value=2.8e-11  Score=83.85  Aligned_cols=170  Identities=14%  Similarity=0.238  Sum_probs=106.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc---cccCCCCCEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR---PLSYPDTDVI   80 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~---~~~~~~~~~~   80 (192)
                      ...+|+++|...|||||+.........+....--..+.....-.+.+..+.+.+||.|||-.+-.-.   ...++++.+.
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            3467999999999999998887776655432211111111111334466789999999986643322   3467889999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHh---hhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH---cCCc
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVK---HFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK---INAF  154 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  154 (192)
                      ++|+|+.+. -.+.+ ..+...+.   +..+++.+=|.+.|.|...+...++...+..++.     ..++++.   .-.+
T Consensus       106 ifvIDaQdd-y~eal-a~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~-----~d~l~d~gle~v~v  178 (347)
T KOG3887|consen  106 IFVIDAQDD-YMEAL-ARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRT-----NDELADAGLEKVQV  178 (347)
T ss_pred             EEEEechHH-HHHHH-HHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHh-----hHHHHhhhhccceE
Confidence            999998763 22333 23332222   3347888999999999988776655544433322     2222222   1113


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .|+.+|. ....|-|.|..+++++...
T Consensus       179 sf~LTSI-yDHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  179 SFYLTSI-YDHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             EEEEeee-cchHHHHHHHHHHHHHhhh
Confidence            4555554 5577999999988887654

>KOG1143|consensus

Probab=99.25  E-value=6.7e-11  Score=86.90  Aligned_cols=167  Identities=16%  Similarity=0.219  Sum_probs=106.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc-------------e-eeeeeEE-EEE-------------------C
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------------V-FENYVAD-IEV-------------------D   49 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------------~-~~~~~~~-~~~-------------------~   49 (192)
                      .++|++++|...+|||||+-.|..+......-..             + +...+.. +.+                   +
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            5899999999999999999888775543321110             0 0011110 011                   1


Q ss_pred             CeEEEEEEEeCCCCCcccccccccCCC--CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754         50 SKQVELALWDTAGQEDYDRLRPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus        50 ~~~~~~~l~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                      ...--++++|.+|+..|.....+.+..  .|.+++++++...-.+..  +..+.++...  +.|+.++++|+|+......
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhH
Confidence            112358999999999998887776654  788999998887644433  3555666555  8999999999999876433


Q ss_pred             hhhhhh------------ccCCCCCHHHHHHHHHH---cCCceEEEeccCCcCCHHHHHHHH
Q psy14754        128 IKELNK------------MKQEPVKPEEGRAMAQK---INAFAYLECSAKSKEGVREVFETA  174 (192)
Q Consensus       128 ~~~~~~------------~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~i  174 (192)
                      .....+            ...+..+..++..-+++   -+..|+|.+|+..|+|++-+...+
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            222211            11222333333333333   244799999999999988665443

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.25  E-value=7.3e-11  Score=86.94  Aligned_cols=169  Identities=18%  Similarity=0.134  Sum_probs=103.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce---------------eeeeeEEEEEC------------------
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---------------FENYVADIEVD------------------   49 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~------------------   49 (192)
                      +.++.|.++|+.++|||||+-.|..+...+..-.+-               .+.....+.++                  
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            467899999999999999998887766554321110               00001111121                  


Q ss_pred             ---CeEEEEEEEeCCCCCccccccc--ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         50 ---SKQVELALWDTAGQEDYDRLRP--LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        50 ---~~~~~~~l~D~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                         ..+.-+.++|+.||+.|...+.  ..-+..|..++++.+++.  ........+......  ..|+++++||+|+.++
T Consensus       195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a~--~lPviVvvTK~D~~~d  270 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALAM--ELPVIVVVTKIDMVPD  270 (527)
T ss_pred             hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhhh--cCCEEEEEEecccCcH
Confidence               1223589999999999876553  344578999999999886  333333444444433  7999999999999876


Q ss_pred             ccchhhhhh-------cc--CCCCCH-HHH--HHHHH--HcCCceEEEeccCCcCCHHHHHHHHH
Q psy14754        125 PNTIKELNK-------MK--QEPVKP-EEG--RAMAQ--KINAFAYLECSAKSKEGVREVFETAT  175 (192)
Q Consensus       125 ~~~~~~~~~-------~~--~~~~~~-~~~--~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~i~  175 (192)
                      .......++       ..  +..+.. ...  ...+.  ..+..|+|.+|+.+|+|++-+.+.+.
T Consensus       271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            554332111       00  011111 111  11111  12247999999999999986655443

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.24  E-value=9.3e-11  Score=84.80  Aligned_cols=58  Identities=17%  Similarity=0.025  Sum_probs=40.1

Q ss_pred             CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        109 NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       109 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      ..+-++|+||+|+.+...           .........+...++..+++++||++++|++++++||...
T Consensus       230 ~~ADIVVLNKiDLl~~~~-----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLN-----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccH-----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            467799999999965210           0011122233344455789999999999999999999764

>KOG0463|consensus

Probab=99.20  E-value=3.8e-11  Score=88.33  Aligned_cols=167  Identities=14%  Similarity=0.172  Sum_probs=100.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcc------------------cCcee---------------------eeee
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY------------------VPTVF---------------------ENYV   43 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~---------------------~~~~   43 (192)
                      ..+.+|+|+|...+|||||+-.|..+......                  ....+                     .-..
T Consensus       131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW  210 (641)
T KOG0463|consen  131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW  210 (641)
T ss_pred             ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence            46899999999999999999655543322211                  00000                     0001


Q ss_pred             EEEEECCeEEEEEEEeCCCCCcccccccccC--CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccc
Q psy14754         44 ADIEVDSKQVELALWDTAGQEDYDRLRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL  121 (192)
Q Consensus        44 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  121 (192)
                      .++ .+...-.++++|.+|++.|...+..-.  ...|..++++-++..  +.......+.+....  ..|+.+|+||+|+
T Consensus       211 vkI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALaL--~VPVfvVVTKIDM  285 (641)
T KOG0463|consen  211 VKI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALAL--HVPVFVVVTKIDM  285 (641)
T ss_pred             eee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhhh--cCcEEEEEEeecc
Confidence            111 122233589999999999987765443  347888888766543  444433444443333  7999999999999


Q ss_pred             cCCccchhhhhhccCCCCCH----------------HHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHH
Q psy14754        122 RNDPNTIKELNKMKQEPVKP----------------EEGRAMAQKINAFAYLECSAKSKEGVREVFETAT  175 (192)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~  175 (192)
                      .+++...+.++.+..-..+.                ..+..|..+.- +|+|.+|..+|+|++-+...+.
T Consensus       286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~-CPIFQvSNVtG~NL~LLkmFLN  354 (641)
T KOG0463|consen  286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERV-CPIFQVSNVTGTNLPLLKMFLN  354 (641)
T ss_pred             CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccc-cceEEeccccCCChHHHHHHHh
Confidence            99877766553322111000                00011212222 5899999999999987665543

>KOG0705|consensus

Probab=99.20  E-value=4.9e-11  Score=91.25  Aligned_cols=165  Identities=20%  Similarity=0.323  Sum_probs=125.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      -++|+.|+|..++|||+|+.+++.+.+.... .+.+..+.+.+..++....+.+.|.+|...     ..+..-.|++|+|
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv  102 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV  102 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence            4899999999999999999999998876663 344556677777888888899999988422     2244567999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      +.+.+..+++.+......+.... ....|+++++++.-.....          .+.+.+.+++.+...+....+|++++.
T Consensus       103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~----------~rv~~da~~r~l~~~~krcsy~et~at  172 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKR----------PRVITDDRARQLSAQMKRCSYYETCAT  172 (749)
T ss_pred             EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhccc----------ccccchHHHHHHHHhcCccceeecchh
Confidence            99999888888753333333221 2368888888876544332          467777888888777766789999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhccc
Q psy14754        163 SKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +|.+++..|+.+..+....+++
T Consensus       173 yGlnv~rvf~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  173 YGLNVERVFQEVAQKIVQLRKY  194 (749)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhh
Confidence            9999999999998888776543

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.20  E-value=1.9e-10  Score=90.81  Aligned_cols=119  Identities=11%  Similarity=0.037  Sum_probs=72.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc------c----ccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDYDR------L----RPL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~----~~~   72 (192)
                      ..++|+++|.+|+||||++|.|++....... ....++.. ........+..+.++||||..+...      .    ...
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            4689999999999999999999997643322 21222222 1111122346799999999654321      0    111


Q ss_pred             cCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCC
Q psy14754         73 SYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND  124 (192)
Q Consensus        73 ~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~  124 (192)
                      ++.  ..|++|+|..+...... .....++..+...+.   -..+|||+|+.|..++
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D-~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRD-SNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCcccc-HHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            222  47999999877532211 111234454544332   3678999999999864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0468|consensus

Probab=99.17  E-value=1.3e-10  Score=90.88  Aligned_cols=115  Identities=18%  Similarity=0.222  Sum_probs=81.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce----------------eeeeeEE-----EEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------------FENYVAD-----IEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------------~~~~~~~-----~~~~~~~~~~~l~D~~g   62 (192)
                      +-.+|+++|+-++|||+|+..|.....++......                .......     -..+++.+-+.+.||||
T Consensus       127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG  206 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG  206 (971)
T ss_pred             eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence            46789999999999999999998765544321110                0000000     12245667899999999


Q ss_pred             CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      |-.|.+.....++.+|++++++|+.+.-.+.--  .++...-.  .+.|+++|+||+|..
T Consensus       207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~ikhaiq--~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RIIKHAIQ--NRLPIVVVINKVDRL  262 (971)
T ss_pred             cccchHHHHHHhhhcceEEEEEEcccCceeeHH--HHHHHHHh--ccCcEEEEEehhHHH
Confidence            999999999999999999999999987544332  22222222  279999999999984

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=9.7e-10  Score=81.20  Aligned_cols=84  Identities=17%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE---------------E--ECCeEEEEEEEeCCCCCc--
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI---------------E--VDSKQVELALWDTAGQED--   65 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~l~D~~g~~~--   65 (192)
                      .+++.|+|.||+|||||.|+++.......-.|..+......+               .  .......+.++|++|.-.  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            578999999999999999999998754333333322221111               0  012335789999999332  


Q ss_pred             -----ccccccccCCCCCEEEEEEECCC
Q psy14754         66 -----YDRLRPLSYPDTDVILMCFSIDS   88 (192)
Q Consensus        66 -----~~~~~~~~~~~~~~~i~v~d~~~   88 (192)
                           .....-..++.+|+++.|+++.+
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence                 33333456788999999999974

>smart00053 DYNc Dynamin, GTPase

Probab=99.15  E-value=2.3e-10  Score=81.11  Aligned_cols=69  Identities=20%  Similarity=0.133  Sum_probs=43.2

Q ss_pred             EEEEEEeCCCCCcc-------------cccccccCC-CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeec
Q psy14754         53 VELALWDTAGQEDY-------------DRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK  118 (192)
Q Consensus        53 ~~~~l~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  118 (192)
                      ..+.++|+||....             ..+...+++ ..+++++|+|+...-.-+.. ..+...+...  +.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence            46899999996421             112233555 45689999988653221111 1344444443  7899999999


Q ss_pred             ccccCC
Q psy14754        119 KDLRND  124 (192)
Q Consensus       119 ~D~~~~  124 (192)
                      .|....
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998763

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG2486|consensus

Probab=99.14  E-value=7.1e-11  Score=83.45  Aligned_cols=162  Identities=14%  Similarity=0.100  Sum_probs=96.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCC----------CCccccccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAG----------QEDYDRLRP   71 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~   71 (192)
                      ..+.++++.|.+|+|||||+|-++..+..... .+..+.  ...+..-.-+-.+.++|.||          ..++.....
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~--Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~  211 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGK--TQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK  211 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcc--ceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence            45789999999999999999999886643322 222222  22222333445789999999          112222222


Q ss_pred             ccCC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH--HHH
Q psy14754         72 LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE--GRA  146 (192)
Q Consensus        72 ~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~  146 (192)
                      .++.   +---+.+++|++-+  ++..+...++.+.++  ++|+.+|+||+|.......-.      .+......  .+.
T Consensus       212 ~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~------kKp~~~i~~~f~~  281 (320)
T KOG2486|consen  212 SYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTG------KKPGLNIKINFQG  281 (320)
T ss_pred             HHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccc------cCccccceeehhh
Confidence            2222   23345566677655  666655677777777  899999999999875432100      00000000  011


Q ss_pred             HHHH--cCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754        147 MAQK--INAFAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus       147 ~~~~--~~~~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      +.+.  ....|.+.+|+.++.|+++++-.+.+
T Consensus       282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ccccceeccCCceeeecccccCceeeeeehhh
Confidence            1111  11146778999999999998876654

>cd01855 YqeH YqeH

Probab=99.13  E-value=3.4e-10  Score=78.25  Aligned_cols=95  Identities=23%  Similarity=0.237  Sum_probs=64.1

Q ss_pred             ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy14754         66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR  145 (192)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  145 (192)
                      +...+...++.+|++++|+|++++..      .|...+.....+.|+++|+||+|+.....             ......
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~-------------~~~~~~   84 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLPKDK-------------NLVRIK   84 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCCCCC-------------CHHHHH
Confidence            46677788899999999999987531      12222222234789999999999865211             111222


Q ss_pred             HHH-----HHcC--CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        146 AMA-----QKIN--AFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       146 ~~~-----~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      .+.     +..+  ..+++++||+++.|++++++.|.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          85 NWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            222     1222  126899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0410|consensus

Probab=99.12  E-value=3.6e-11  Score=86.66  Aligned_cols=150  Identities=20%  Similarity=0.262  Sum_probs=92.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCceeeeeeEEEEECCeEEEEEEEeCCCCCc---------ccccccccCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYVADIEVDSKQVELALWDTAGQED---------YDRLRPLSYP   75 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~   75 (192)
                      .-|.++|..|+|||||+++|.+...-.. ....+-+...+...... +..+.+.||-|.-+         |..... ...
T Consensus       179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLe-eVa  256 (410)
T KOG0410|consen  179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLE-EVA  256 (410)
T ss_pred             ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHH-HHh
Confidence            4689999999999999999996553222 22222222222223333 34688999999422         222211 234


Q ss_pred             CCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCc----EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVP----IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      .+|.++.|.|+++|+.-+.. +..+..++... +..|    ++=|=||.|..+....                    .+.
T Consensus       257 eadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------------------~E~  315 (410)
T KOG0410|consen  257 EADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------------------EEK  315 (410)
T ss_pred             hcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------------------ccc
Confidence            78999999999998643333 45555555542 2233    3445577776542110                    111


Q ss_pred             cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        151 INAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +   .-+.+|+++|+|++++.+.+-.+....
T Consensus       316 n---~~v~isaltgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  316 N---LDVGISALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             C---CccccccccCccHHHHHHHHHHHhhhh
Confidence            1   247899999999999999987776554

>KOG0465|consensus

Probab=99.08  E-value=4.9e-10  Score=86.82  Aligned_cols=119  Identities=18%  Similarity=0.071  Sum_probs=82.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCC-----CCccc-C-----------ceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQF-----PEVYV-P-----------TVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~-----~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      --+|.+..+..|||||+-++.+...-     .+... .           .+.+..+....+...+..+.++|||||-+|.
T Consensus        39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT  118 (721)
T KOG0465|consen   39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT  118 (721)
T ss_pred             hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence            45788999999999999999765221     11000 0           0111112223344557889999999999999


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                      -.....++-.|+++++++...+-.-+.  ........++  ++|-+..+||+|....++.
T Consensus       119 ~EVeRALrVlDGaVlvl~aV~GVqsQt--~tV~rQ~~ry--~vP~i~FiNKmDRmGa~~~  174 (721)
T KOG0465|consen  119 FEVERALRVLDGAVLVLDAVAGVESQT--ETVWRQMKRY--NVPRICFINKMDRMGASPF  174 (721)
T ss_pred             EEehhhhhhccCeEEEEEcccceehhh--HHHHHHHHhc--CCCeEEEEehhhhcCCChH
Confidence            888889999999999999987633232  3444444555  8999999999999775553

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.04  E-value=1e-09  Score=82.04  Aligned_cols=82  Identities=18%  Similarity=0.092  Sum_probs=53.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-EEEEECCe---------------EEEEEEEeCCCCCccccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSK---------------QVELALWDTAGQEDYDRL   69 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~l~D~~g~~~~~~~   69 (192)
                      ++|+++|.||+|||||+|+|.+........|.++.... -.+.+...               ...+.++|+||...-.+.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999997743332233321111 11122221               135899999995432111


Q ss_pred             -------ccccCCCCCEEEEEEECC
Q psy14754         70 -------RPLSYPDTDVILMCFSID   87 (192)
Q Consensus        70 -------~~~~~~~~~~~i~v~d~~   87 (192)
                             ....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                   122467899999999985

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.04  E-value=5.8e-10  Score=73.35  Aligned_cols=54  Identities=19%  Similarity=0.199  Sum_probs=38.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   63 (192)
                      +++++|.+|+|||||+|++.+............+.....+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            79999999999999999999887654433333333333333433   5799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1954|consensus

Probab=99.04  E-value=7e-10  Score=81.50  Aligned_cols=116  Identities=19%  Similarity=0.301  Sum_probs=76.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc--eeeeeeEEEEECCeE------------------------------
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--VFENYVADIEVDSKQ------------------------------   52 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------------------------   52 (192)
                      ..-|+++|+-+.|||||++.|+.+.++.....+  +++.+...+.-+.++                              
T Consensus        58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            456999999999999999999999987544222  222333322111111                              


Q ss_pred             ---------EEEEEEeCCCCC-----------cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcE
Q psy14754         53 ---------VELALWDTAGQE-----------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI  112 (192)
Q Consensus        53 ---------~~~~l~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  112 (192)
                               -.++++||||.-           +|......+...+|.++++||....+--.+. +..+..++..  .-.+
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki  214 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI  214 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence                     168999999932           2344456677889999999998654322222 2344444433  5678


Q ss_pred             EEEeecccccC
Q psy14754        113 ILVGNKKDLRN  123 (192)
Q Consensus       113 ivv~nK~D~~~  123 (192)
                      -||+||.|...
T Consensus       215 RVVLNKADqVd  225 (532)
T KOG1954|consen  215 RVVLNKADQVD  225 (532)
T ss_pred             EEEeccccccC
Confidence            89999999876

>PRK00098 GTPase RsgA; Reviewed

Probab=99.04  E-value=1.1e-09  Score=80.64  Aligned_cols=88  Identities=25%  Similarity=0.310  Sum_probs=63.8

Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      .+.++|.+++|+|+.++.......+.|+..+...  ++|+++|+||+|+.....             .........+.++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~-------------~~~~~~~~~~~~g  141 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLE-------------EARELLALYRAIG  141 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHH-------------HHHHHHHHHHHCC
Confidence            3579999999999988766555545676665543  799999999999863210             1112233344455


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHH
Q psy14754        153 AFAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                       ++++++||+++.|++++++.+..
T Consensus       142 -~~v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        142 -YDVLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             -CeEEEEeCCCCccHHHHHhhccC
Confidence             58999999999999999988753

>KOG0085|consensus

Probab=99.03  E-value=6.7e-11  Score=81.60  Aligned_cols=136  Identities=20%  Similarity=0.201  Sum_probs=89.8

Q ss_pred             ECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhh------chhhhhHHHHh-----hhCCCCcEEEEe
Q psy14754         48 VDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE------NIPEKWTPEVK-----HFCPNVPIILVG  116 (192)
Q Consensus        48 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~~~~-----~~~~~~p~ivv~  116 (192)
                      ++...+.+.+.|.+|+..-+..|.+++++...+++++..+..+..-      +-.+.-..+++     .++.+.++|+.+
T Consensus       194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL  273 (359)
T KOG0085|consen  194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL  273 (359)
T ss_pred             cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence            3445667889999999999999999999988888887776643211      10111111222     356799999999


Q ss_pred             ecccccCCccchhhhhhccCCCC----CHHHHHHHHH-----HcCC----ceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        117 NKKDLRNDPNTIKELNKMKQEPV----KPEEGRAMAQ-----KINA----FAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       117 nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~----~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ||.|+.++.....++....++..    ..+.+++|.-     ..+.    +.-..+.|.+.+||.-+|..+...+....-
T Consensus       274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            99999988777666544333322    2333444432     1211    112358899999999999999888876543

>cd01859 MJ1464 MJ1464

Probab=99.02  E-value=6.7e-10  Score=74.33  Aligned_cols=94  Identities=21%  Similarity=0.209  Sum_probs=62.4

Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM  147 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (192)
                      ....+..+++|++++|+|++++.....  ..+...+..  .+.|+++|+||+|+.....              ......+
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~   65 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEV--------------LEKWKSI   65 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHH--------------HHHHHHH
Confidence            445566778999999999987643222  123333322  2689999999999853110              0111122


Q ss_pred             HHHcCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        148 AQKINAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       148 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ....+ .+++.+||+++.|++++++.+.+.+..
T Consensus        66 ~~~~~-~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          66 KESEG-IPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             HHhCC-CcEEEEEccccccHHHHHHHHHHHHhh
Confidence            23333 578999999999999999999887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.02  E-value=5.8e-09  Score=76.75  Aligned_cols=120  Identities=20%  Similarity=0.240  Sum_probs=74.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc----------cCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc---c
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY----------VPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR---L   69 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~---~   69 (192)
                      ..++|+++|+.|+|||||+|.|++.......          .++..... ...+.-++-...+.++||||.-++-.   .
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            4789999999999999999999987433321          11111111 12233356677899999999222110   0


Q ss_pred             c----------------------cc-cC--CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         70 R----------------------PL-SY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        70 ~----------------------~~-~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      |                      +. .+  ...|++|+.+..+. ..+..++=..+..+.   +.+.+|=|+.|+|....
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~  177 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh---cccCeeeeeeccccCCH
Confidence            0                      00 11  23788888887664 445555433444444   46899999999999876


Q ss_pred             ccc
Q psy14754        125 PNT  127 (192)
Q Consensus       125 ~~~  127 (192)
                      .+.
T Consensus       178 ~El  180 (373)
T COG5019         178 DEL  180 (373)
T ss_pred             HHH
Confidence            554

>cd01900 YchF YchF subfamily

Probab=99.02  E-value=8.8e-10  Score=79.73  Aligned_cols=80  Identities=19%  Similarity=0.113  Sum_probs=51.2

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCe---------------EEEEEEEeCCCCCccccc--
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSK---------------QVELALWDTAGQEDYDRL--   69 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~l~D~~g~~~~~~~--   69 (192)
                      |+++|.||+|||||+|+|++........|.++... .-.+.+.+.               ...+.++|+||...-.+.  
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57999999999999999999876443333333111 112222221               235899999995432111  


Q ss_pred             -----ccccCCCCCEEEEEEECC
Q psy14754         70 -----RPLSYPDTDVILMCFSID   87 (192)
Q Consensus        70 -----~~~~~~~~~~~i~v~d~~   87 (192)
                           ....++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence                 122356899999999975

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.99  E-value=1.4e-09  Score=73.66  Aligned_cols=55  Identities=18%  Similarity=0.283  Sum_probs=38.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      .++++++|.||+|||||+|++.+.........++.+.....+...   ..+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence            479999999999999999999987654433333333323333332   2588999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1547|consensus

Probab=98.99  E-value=1.2e-08  Score=70.98  Aligned_cols=116  Identities=21%  Similarity=0.270  Sum_probs=73.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc--------cCceeee--eeEEEEECCeEEEEEEEeCCCCCcc---cccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--------VPTVFEN--YVADIEVDSKQVELALWDTAGQEDY---DRLR   70 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~---~~~~   70 (192)
                      ..++|.|+|.+|.||||++|.++.....+..        .+.+...  ..+.+.-++-..++.++||||.-++   ...|
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            5799999999999999999999875543311        1112211  1233344566678999999993221   1111


Q ss_pred             -----------------------cccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         71 -----------------------PLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        71 -----------------------~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                                             ...+.  ..+++++.+..+. .++..++-.++..+.+   -..++=|+-|.|...
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~---vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE---VVNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh---hheeeeeEeeccccc
Confidence                                   11222  3677888776664 5676665445555544   578888999999765

>cd01858 NGP_1 NGP-1

Probab=98.99  E-value=1.6e-09  Score=72.64  Aligned_cols=56  Identities=14%  Similarity=0.115  Sum_probs=37.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      ..++|+++|.+|+|||||+|+|.+.........++++.....+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            36789999999999999999999876544333233332222222221   378999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0460|consensus

Probab=98.99  E-value=2.4e-09  Score=77.94  Aligned_cols=168  Identities=17%  Similarity=0.188  Sum_probs=105.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC----------C------CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ----------F------PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      .+++|.-+|+..-|||||-.++..-.          +      ++.....+ +.....+.++-.....--.|+|||.+|-
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGI-TIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGI-TINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccc-eEeeeeeeeeccccccccCCCCchHHHH
Confidence            46899999999999999998876511          1      11111111 1112233444445556778999999998


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM  147 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (192)
                      .....-..+.|++|+|+.++|..--+.- +.++ +.+. ..-..+++.+||.|+.++.+..+..         .-+.+++
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTr-EHlL-LArQ-VGV~~ivvfiNKvD~V~d~e~leLV---------EmE~REl  199 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTR-EHLL-LARQ-VGVKHIVVFINKVDLVDDPEMLELV---------EMEIREL  199 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchH-HHHH-HHHH-cCCceEEEEEecccccCCHHHHHHH---------HHHHHHH
Confidence            8777777789999999999996432221 2221 2222 1135678999999998765533322         3345566


Q ss_pred             HHHcC----CceEEEeccC---CcC-------CHHHHHHHHHHHHhhhccc
Q psy14754        148 AQKIN----AFAYLECSAK---SKE-------GVREVFETATRAALQVKKK  184 (192)
Q Consensus       148 ~~~~~----~~~~~~~Sa~---~~~-------gi~~~~~~i~~~~~~~~~~  184 (192)
                      ...++    ..|++.-||+   ++.       .|.+|++.+-..+..+.+.
T Consensus       200 Lse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~  250 (449)
T KOG0460|consen  200 LSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERD  250 (449)
T ss_pred             HHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccc
Confidence            55554    2688876654   442       2667777777666666554

>cd01858 NGP_1 NGP-1

Probab=98.94  E-value=5.7e-09  Score=69.90  Aligned_cols=91  Identities=14%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      .++.+|.+++|+|+.++..-  ....+...+.....+.|+++|+||+|+.+...             .......+.+.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-------------~~~~~~~~~~~~~   69 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-------------TARWVKILSKEYP   69 (157)
T ss_pred             hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhccCCCCEEEEEEchhcCCHHH-------------HHHHHHHHhcCCc
Confidence            45789999999999986322  22344455544334689999999999964210             1122223333222


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                       +..+.+||+++.|++++++.+...+.
T Consensus        70 -~~~~~iSa~~~~~~~~L~~~l~~~~~   95 (157)
T cd01858          70 -TIAFHASINNPFGKGSLIQLLRQFSK   95 (157)
T ss_pred             -EEEEEeeccccccHHHHHHHHHHHHh
Confidence             23578999999999999999977643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2655|consensus

Probab=98.93  E-value=4.3e-08  Score=72.70  Aligned_cols=119  Identities=19%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc--------cCceeeeee--EEEEECCeEEEEEEEeCCCCCccc------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--------VPTVFENYV--ADIEVDSKQVELALWDTAGQEDYD------   67 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~------   67 (192)
                      ..+.++++|+.|.|||||+|.|+...+....        ...+.....  ..+.-++-.+.++++||||.-+.-      
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            3589999999999999999998876443321        111111111  122334566789999999922210      


Q ss_pred             -------------------ccccccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754         68 -------------------RLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        68 -------------------~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  126 (192)
                                         ...+..+.  ..+++++.+..+. ..+..++-.++..+.   ..+++|=|+.|+|.....+
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHh---ccccccceeeccccCCHHH
Confidence                               01111222  4788888887664 345554434444444   4788999999999877544

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.91  E-value=5.7e-09  Score=78.92  Aligned_cols=96  Identities=25%  Similarity=0.362  Sum_probs=68.4

Q ss_pred             CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHH
Q psy14754         63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPE  142 (192)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  142 (192)
                      .++|........+.++++++|+|+.+..      ..|...+.+...+.|+++|+||+|+.+..             ...+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~-------------~~~~  110 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKS-------------VNLS  110 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCC-------------CCHH
Confidence            4567777777788999999999987642      24555555555578999999999996521             1122


Q ss_pred             HH----HHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        143 EG----RAMAQKINA--FAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       143 ~~----~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      ..    .++++..+.  ..++.+||+++.|++++++.+.+.
T Consensus       111 ~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       111 KIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            22    233444442  148899999999999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.91  E-value=8.6e-09  Score=77.31  Aligned_cols=89  Identities=18%  Similarity=0.279  Sum_probs=61.3

Q ss_pred             cccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754         71 PLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ  149 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (192)
                      ...+.++|.+++|+|+.++. ....+ ..|+.....  .+.|+++|+||+|+.....              .........
T Consensus        84 R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~--------------~~~~~~~~~  146 (352)
T PRK12289         84 RPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE--------------QQQWQDRLQ  146 (352)
T ss_pred             chhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH--------------HHHHHHHHH
Confidence            34578999999999998765 22233 355544433  4899999999999964210              011122223


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      .++ ++++.+||+++.|++++++.+...
T Consensus       147 ~~g-~~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        147 QWG-YQPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             hcC-CeEEEEEcCCCCCHHHHhhhhccc
Confidence            445 588999999999999999988654

>KOG1487|consensus

Probab=98.90  E-value=1.2e-08  Score=71.83  Aligned_cols=85  Identities=15%  Similarity=0.108  Sum_probs=59.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-------ccccccccCCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-------YDRLRPLSYPDTD   78 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~   78 (192)
                      -+|.++|-|.+||||++..+.+...+......++.. ..+-...+++.++++.|.||.-+       -..+.....+.++
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~-~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn  138 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLT-TVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN  138 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEE-EecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence            378999999999999999999876554433222222 22223456778899999999322       2234455677899


Q ss_pred             EEEEEEECCChhh
Q psy14754         79 VILMCFSIDSPDS   91 (192)
Q Consensus        79 ~~i~v~d~~~~~~   91 (192)
                      .+++|+|+-.+-+
T Consensus       139 li~~vld~~kp~~  151 (358)
T KOG1487|consen  139 LIFIVLDVLKPLS  151 (358)
T ss_pred             EEEEEeeccCccc
Confidence            9999999987644

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.89  E-value=8.2e-09  Score=75.75  Aligned_cols=88  Identities=20%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             cccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754         71 PLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ  149 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (192)
                      +..+.++|.+++|+|+.++. ++..+. .|+..+...  ++|+++|+||+|+.+...              .........
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ld-r~L~~~~~~--~ip~iIVlNK~DL~~~~~--------------~~~~~~~~~  135 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLD-RYLVAAEAA--GIEPVIVLTKADLLDDEE--------------EELELVEAL  135 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEEHHHCCChHH--------------HHHHHHHHH
Confidence            34577899999999999886 666653 566655543  799999999999865210              111222233


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      ..+ ++++.+||+++.|+++++..+..
T Consensus       136 ~~g-~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         136 ALG-YPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             hCC-CeEEEEECCCCccHHHHHhhhcc
Confidence            344 68999999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0099|consensus

Probab=98.89  E-value=4e-09  Score=74.17  Aligned_cols=133  Identities=18%  Similarity=0.272  Sum_probs=81.1

Q ss_pred             ECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhh----------hh----chhhhhHHHHhhhCCCCcEE
Q psy14754         48 VDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS----------LE----NIPEKWTPEVKHFCPNVPII  113 (192)
Q Consensus        48 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~----~~~~~~~~~~~~~~~~~p~i  113 (192)
                      +....+.++.+|.+|+.+-+..|..++....++|+|+..+..+-          ++    -....|..   ++...+.+|
T Consensus       197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnN---RwL~tisvI  273 (379)
T KOG0099|consen  197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNN---RWLRTISVI  273 (379)
T ss_pred             EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhh---hHHhhhhee
Confidence            33445679999999999999999999999999999998876421          11    11112222   233478999


Q ss_pred             EEeecccccCCccchhhh---------------hhccCCCC-----------CHHHHHHHHH-----HcCCceEEEeccC
Q psy14754        114 LVGNKKDLRNDPNTIKEL---------------NKMKQEPV-----------KPEEGRAMAQ-----KINAFAYLECSAK  162 (192)
Q Consensus       114 vv~nK~D~~~~~~~~~~~---------------~~~~~~~~-----------~~~~~~~~~~-----~~~~~~~~~~Sa~  162 (192)
                      +.+||.|+..........               ++...+.-           ...+-.+...     ...++| .++.|.
T Consensus       274 lFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYp-HFTcAv  352 (379)
T KOG0099|consen  274 LFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP-HFTCAV  352 (379)
T ss_pred             EEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccc-ceeEee
Confidence            999999996533322110               00000000           0000001111     112233 458889


Q ss_pred             CcCCHHHHHHHHHHHHhhhccc
Q psy14754        163 SKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +.++|..+|+...+.+...+-+
T Consensus       353 DTenIrrVFnDcrdiIqr~hlr  374 (379)
T KOG0099|consen  353 DTENIRRVFNDCRDIIQRMHLR  374 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988877766543

>cd01856 YlqF YlqF

Probab=98.88  E-value=6.6e-09  Score=70.59  Aligned_cols=57  Identities=19%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   63 (192)
                      ..++++++|.+|+|||||+|++.+..+........++.....+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4579999999999999999999987764332222222223333333   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0448|consensus

Probab=98.86  E-value=1.2e-08  Score=80.32  Aligned_cols=120  Identities=14%  Similarity=0.197  Sum_probs=72.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEE-------------------------------------
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-------------------------------------   45 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------   45 (192)
                      ....||++.|..++||||++|+++..+.-.......+..+...                                     
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4678999999999999999999987654332222211111110                                     


Q ss_pred             -------EEECCeE-----EEEEEEeCCCCCc---ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCC
Q psy14754         46 -------IEVDSKQ-----VELALWDTAGQED---YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV  110 (192)
Q Consensus        46 -------~~~~~~~-----~~~~l~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  110 (192)
                             +..+.+.     -.+.++|.||-+.   ..+-...++..+|++|+|.++.+.....+  ..++....+.  ..
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CC
Confidence                   0011110     1467889999543   33334457779999999999887644433  3444444443  34


Q ss_pred             cEEEEeecccccCCcc
Q psy14754        111 PIILVGNKKDLRNDPN  126 (192)
Q Consensus       111 p~ivv~nK~D~~~~~~  126 (192)
                      .+.|+.||.|...+.+
T Consensus       263 niFIlnnkwDasase~  278 (749)
T KOG0448|consen  263 NIFILNNKWDASASEP  278 (749)
T ss_pred             cEEEEechhhhhcccH
Confidence            4556667779876533

>KOG0464|consensus

Probab=98.85  E-value=5.4e-10  Score=83.37  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=86.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC--------CCCcc---------cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ--------FPEVY---------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      .+|.++.+..+||||...+++.-.        ..+..         ...+.+..+..+.++.++.++.++||||+.+|+-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            478999999999999999987521        11111         0112233345567888999999999999999999


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      ....+++-.|+++.|+|.+.+-.-+.+ ..|.+.-+.   ++|.+.++||+|...+
T Consensus       118 everclrvldgavav~dasagve~qtl-tvwrqadk~---~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADKF---KIPAHCFINKMDKLAA  169 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCccccee-eeehhcccc---CCchhhhhhhhhhhhh
Confidence            999999999999999999987555555 256554333   7999999999998653

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.85  E-value=1e-08  Score=74.85  Aligned_cols=57  Identities=23%  Similarity=0.201  Sum_probs=39.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   63 (192)
                      ..++++++|.||+|||||+|+|.+.........+..+.....+....   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            46889999999999999999999876544433333333333333322   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.83  E-value=1.5e-08  Score=74.35  Aligned_cols=57  Identities=19%  Similarity=0.182  Sum_probs=39.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   63 (192)
                      ..++++++|.||+|||||+|+|.+.........++.+.....+...   ..+.++||||-
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi  176 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG---KGLELLDTPGI  176 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC---CcEEEEECCCc
Confidence            4578999999999999999999987754433222222222222322   24789999996

>PRK12288 GTPase RsgA; Reviewed

Probab=98.81  E-value=2e-08  Score=75.27  Aligned_cols=90  Identities=21%  Similarity=0.237  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ..++|.+++|++.....++..+. .|+.....  .++|.++|+||+|+......           ..........+..+ 
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~--~~i~~VIVlNK~DL~~~~~~-----------~~~~~~~~~y~~~g-  182 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIID-RYLVACET--LGIEPLIVLNKIDLLDDEGR-----------AFVNEQLDIYRNIG-  182 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEECccCCCcHHH-----------HHHHHHHHHHHhCC-
Confidence            34689999999987766777764 66655543  37999999999999653110           00111122233445 


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ++++++||++++|++++++.+...+
T Consensus       183 ~~v~~vSA~tg~GideL~~~L~~ki  207 (347)
T PRK12288        183 YRVLMVSSHTGEGLEELEAALTGRI  207 (347)
T ss_pred             CeEEEEeCCCCcCHHHHHHHHhhCC
Confidence            5899999999999999999987643

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.80  E-value=1.3e-08  Score=75.79  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=42.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   63 (192)
                      ...++++|+|-||+|||||+|+|.+.........++.+.....+.....   +.++||||-
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            3458899999999999999999999887555444444444444444433   899999993

>cd01855 YqeH YqeH

Probab=98.78  E-value=1.4e-08  Score=70.25  Aligned_cols=55  Identities=20%  Similarity=0.217  Sum_probs=36.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCC--------cccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPE--------VYVPTVFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      +.+++++|.+|+|||||+|+|.+.....        ....++++.....+.+..   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            4689999999999999999999854311        111122333233333332   479999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.76  E-value=3.2e-08  Score=66.19  Aligned_cols=55  Identities=18%  Similarity=0.251  Sum_probs=36.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEE-EEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g   62 (192)
                      ...+++++|.+|+||||++|++.+...... .+..+.+.... +..+   ..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~---~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAST-SPSPGYTKGEQLVKIT---SKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence            467899999999999999999997653332 22222222222 1122   2689999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.76  E-value=2.4e-08  Score=66.76  Aligned_cols=56  Identities=16%  Similarity=0.180  Sum_probs=37.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      ...+++++|.+|+|||||+|++.+...........++.....+...   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence            4578999999999999999999986643222212222222222222   3589999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0466|consensus

Probab=98.75  E-value=5.4e-09  Score=75.14  Aligned_cols=118  Identities=16%  Similarity=0.128  Sum_probs=77.5

Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhh
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNK  133 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  133 (192)
                      .+.++|+|||+-.-....+-..-+|++++++..+.........+. +..+.-. .-+.++++-||+|+..+....++.  
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEH-LaaveiM-~LkhiiilQNKiDli~e~~A~eq~--  201 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH-LAAVEIM-KLKHIIILQNKIDLIKESQALEQH--  201 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhH-HHHHHHh-hhceEEEEechhhhhhHHHHHHHH--
Confidence            478999999987665555555567999999877664322222222 2222111 136789999999998754433222  


Q ss_pred             ccCCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        134 MKQEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                              +..+.|.+.-  ...|++++||.-+.|++-+.++|.+++-.+-+
T Consensus       202 --------e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR  245 (466)
T KOG0466|consen  202 --------EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR  245 (466)
T ss_pred             --------HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence                    2233444322  23599999999999999999999999876643

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.74  E-value=5.7e-07  Score=59.06  Aligned_cols=115  Identities=19%  Similarity=0.273  Sum_probs=67.3

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCC-CCCcccc-----------
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA-GQEDYDR-----------   68 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~~~~~~-----------   68 (192)
                      |....+||++.|+||+||||++.++...-....+  ..+-..+..+.-.+..+-|.+.|+. |...+..           
T Consensus         1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk   78 (179)
T COG1618           1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGK   78 (179)
T ss_pred             CCCcceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccce
Confidence            4567899999999999999999988754333321  2223334444556677778888887 3111100           


Q ss_pred             ----------c----ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccc
Q psy14754         69 ----------L----RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL  121 (192)
Q Consensus        69 ----------~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~  121 (192)
                                .    ....++.+|  ++++|=-.+-  +.....+...+.... .+.|+|.++.+.+.
T Consensus        79 Y~V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpM--Elks~~f~~~ve~vl~~~kpliatlHrrsr  142 (179)
T COG1618          79 YGVNVEGLEEIAIPALRRALEEAD--VIIIDEIGPM--ELKSKKFREAVEEVLKSGKPLIATLHRRSR  142 (179)
T ss_pred             EEeeHHHHHHHhHHHHHHHhhcCC--EEEEecccch--hhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence                      0    011223345  4455555543  222234555555443 47898888887764

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.74  E-value=6.1e-08  Score=64.78  Aligned_cols=83  Identities=20%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             CEEEEEEECCChhhhhchhhhhH-HHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWT-PEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      |.+++|+|+.++.+....  .+. ..+..  .++|+++|+||+|+.....             .......+..... .++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~-------------~~~~~~~~~~~~~-~~i   62 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV-------------LRKWLAYLRHSYP-TIP   62 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH-------------HHHHHHHHHhhCC-ceE
Confidence            689999999887544322  222 12222  3799999999999854210             0111122322223 478


Q ss_pred             EEeccCCcCCHHHHHHHHHHHH
Q psy14754        157 LECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      +.+||+++.|++++++.+.+..
T Consensus        63 i~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          63 FKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             EEEeccCCcChhhHHHHHHHHh
Confidence            8999999999999999987754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.74  E-value=3e-08  Score=74.32  Aligned_cols=83  Identities=14%  Similarity=-0.009  Sum_probs=55.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeeee-EEEEECCe---------------EEEEEEEeCCCCCccc-
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYV-ADIEVDSK---------------QVELALWDTAGQEDYD-   67 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~l~D~~g~~~~~-   67 (192)
                      +++.++|.|++|||||.+++.+... .....|..+.... -.+.+.+.               ...+.+.|+||...-. 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999999876 4433343322221 12222221               2468999999954322 


Q ss_pred             ------ccccccCCCCCEEEEEEECCC
Q psy14754         68 ------RLRPLSYPDTDVILMCFSIDS   88 (192)
Q Consensus        68 ------~~~~~~~~~~~~~i~v~d~~~   88 (192)
                            ......++.+|++++|++..+
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                  122335678999999999864

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0467|consensus

Probab=98.72  E-value=2.8e-08  Score=79.09  Aligned_cols=113  Identities=17%  Similarity=0.070  Sum_probs=76.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee--------eee-------eEEEEECCeEEEEEEEeCCCCCccccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--------ENY-------VADIEVDSKQVELALWDTAGQEDYDRL   69 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~l~D~~g~~~~~~~   69 (192)
                      --+++++.+..-|||||...|+...-.......+.        +..       .-.+..-.+.+.+.++|+|||-+|.+.
T Consensus         9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se   88 (887)
T KOG0467|consen    9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE   88 (887)
T ss_pred             eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence            35789999999999999998876432111111110        000       111223346788999999999999999


Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccc
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL  121 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  121 (192)
                      .....+-+|++++++|+..+-.-+... .+.+.+   ..+...++|+||+|.
T Consensus        89 vssas~l~d~alvlvdvvegv~~qt~~-vlrq~~---~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   89 VSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAW---IEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhcCCcEEEEeeccccchhHHH-HHHHHH---HccCceEEEEehhhh
Confidence            999999999999999998764333321 122222   236788999999994

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=1.8e-07  Score=72.83  Aligned_cols=141  Identities=12%  Similarity=0.088  Sum_probs=86.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      -++=++|+||||+|||||+..|.............+.    .....++...+++..+|..  .. ......+-+|+++++
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP----iTvvsgK~RRiTflEcp~D--l~-~miDvaKIaDLVlLl  140 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP----ITVVSGKTRRITFLECPSD--LH-QMIDVAKIADLVLLL  140 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc----eEEeecceeEEEEEeChHH--HH-HHHhHHHhhheeEEE
Confidence            4677889999999999999988775432221111111    1134567778999999942  22 223355678999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcE-EEEeecccccCCccchhhhhhccCCCCCHHHHHH-HHHHcCCceEEEecc
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MAQKINAFAYLECSA  161 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa  161 (192)
                      +|..-+-..+.+  .++..+..+  +.|- +-|+|..|+..........+        ..-..+ |.+.++...+|.+|.
T Consensus       141 IdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~K--------KrlkhRfWtEiyqGaKlFylsg  208 (1077)
T COG5192         141 IDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIK--------KRLKHRFWTEIYQGAKLFYLSG  208 (1077)
T ss_pred             eccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccChHHHHHHH--------HHHhhhHHHHHcCCceEEEecc
Confidence            998765333333  456665555  6664 56889999987543322111        111123 334455567787776


Q ss_pred             CC
Q psy14754        162 KS  163 (192)
Q Consensus       162 ~~  163 (192)
                      ..
T Consensus       209 V~  210 (1077)
T COG5192         209 VE  210 (1077)
T ss_pred             cc
Confidence            54

>KOG0447|consensus

Probab=98.63  E-value=7.6e-07  Score=69.14  Aligned_cols=69  Identities=19%  Similarity=0.244  Sum_probs=43.5

Q ss_pred             EEEEEeCCCCC-------------cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccc
Q psy14754         54 ELALWDTAGQE-------------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD  120 (192)
Q Consensus        54 ~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  120 (192)
                      .+.++|.||--             .......++.++.+++|+|+--..-+.-......+...+...  +...|+|+||.|
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKVD  490 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKVD  490 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeecc
Confidence            57889999921             122344567789999999985443222222212333333333  788999999999


Q ss_pred             ccCC
Q psy14754        121 LRND  124 (192)
Q Consensus       121 ~~~~  124 (192)
                      +.+.
T Consensus       491 lAEk  494 (980)
T KOG0447|consen  491 LAEK  494 (980)
T ss_pred             hhhh
Confidence            9874

>KOG1491|consensus

Probab=98.63  E-value=7.2e-08  Score=70.33  Aligned_cols=87  Identities=20%  Similarity=0.135  Sum_probs=57.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC---------------CeEEEEEEEeCCCCCccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD---------------SKQVELALWDTAGQEDYD   67 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~~~~l~D~~g~~~~~   67 (192)
                      ..+++.++|.|++|||||.|+|.+......-.|..+... ...+.+.               .....++++|++|...-.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            578999999999999999999999776543333332221 1122111               123578999999943322


Q ss_pred             -------ccccccCCCCCEEEEEEECCChh
Q psy14754         68 -------RLRPLSYPDTDVILMCFSIDSPD   90 (192)
Q Consensus        68 -------~~~~~~~~~~~~~i~v~d~~~~~   90 (192)
                             ......++.+|+++-|+++.+..
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~d~  128 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFEDT  128 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecCcc
Confidence                   22234567899999999886643

>PRK12288 GTPase RsgA; Reviewed

Probab=98.63  E-value=7.8e-08  Score=72.17  Aligned_cols=58  Identities=16%  Similarity=0.140  Sum_probs=35.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCc-------eeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------VFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      -++++|.+|+|||||+|+|++.....+..-.       .++....-+.+..+.   .++||||...+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            3789999999999999999976543221111       112222222333222   489999976654

>KOG0459|consensus

Probab=98.62  E-value=2.6e-08  Score=74.07  Aligned_cols=164  Identities=13%  Similarity=0.100  Sum_probs=100.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCC--CC----------------Cc-c-----cCceeeee------eEEEEECCeE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQ--FP----------------EV-Y-----VPTVFENY------VADIEVDSKQ   52 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~----------------~~-~-----~~~~~~~~------~~~~~~~~~~   52 (192)
                      ...+++.++|+..+||||+-.+++...  ..                +. |     +....++.      .-...++-..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            357899999999999999886654311  00                00 0     00000000      0011234455


Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hhhchh-hhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI  128 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  128 (192)
                      ..+++.|.|||..|......-..++|..++|+.+.-.+   .|+..- ..-...+.+...-...|+++||+|....+...
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~  236 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN  236 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence            67999999999999888888888999999999885432   222221 11222333333357889999999998876655


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHc-----CCceEEEeccCCcCCHHHHHH
Q psy14754        129 KELNKMKQEPVKPEEGRAMAQKI-----NAFAYLECSAKSKEGVREVFE  172 (192)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~  172 (192)
                      +.+++...      +...|...+     ....++++|..+|.++++...
T Consensus       237 eRy~E~~~------k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  237 ERYEECKE------KLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhHHHHHH------HHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            55543222      222233222     224689999999999887653

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.62  E-value=2.1e-07  Score=69.17  Aligned_cols=96  Identities=11%  Similarity=0.095  Sum_probs=54.2

Q ss_pred             eEEEEEEEeCCCCCccccc-----------c-cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeec
Q psy14754         51 KQVELALWDTAGQEDYDRL-----------R-PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK  118 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~-----------~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  118 (192)
                      .++.+.++||||.......           . ...-...+..++|+|++...  ..+. . ...+.+.  -.+.-+|+||
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~-a~~f~~~--~~~~giIlTK  268 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-Q-AKAFHEA--VGLTGIILTK  268 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-H-HHHHHhh--CCCCEEEEEC
Confidence            4467999999996543221           0 00112467889999998642  2221 1 1111111  1355899999


Q ss_pred             ccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHH
Q psy14754        119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF  171 (192)
Q Consensus       119 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  171 (192)
                      .|....                ...........+ .|+..++  +|++++++-
T Consensus       269 lD~t~~----------------~G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        269 LDGTAK----------------GGVVFAIADELG-IPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCC----------------ccHHHHHHHHHC-CCEEEEe--CCCChhhCc
Confidence            996542                122333444445 5888887  677776653

>PRK12289 GTPase RsgA; Reviewed

Probab=98.62  E-value=8.1e-08  Score=72.14  Aligned_cols=57  Identities=23%  Similarity=0.140  Sum_probs=35.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCce-------eeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-------FENYVADIEVDSKQVELALWDTAGQEDY   66 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~~   66 (192)
                      .++++|++|+|||||+|+|++...........       ++....-+....++   .++||||...+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            37999999999999999999765332221111       22222233333332   68999996443

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.61  E-value=3.3e-08  Score=65.70  Aligned_cols=59  Identities=15%  Similarity=0.150  Sum_probs=33.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcc-------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-------VPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      -.++++|++|+|||||+|.|.........       ....+++...-+..+..   ..++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            46899999999999999999986422110       11122222333334333   3689999965443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01856 YlqF YlqF

Probab=98.60  E-value=4.2e-07  Score=61.75  Aligned_cols=88  Identities=22%  Similarity=0.159  Sum_probs=58.1

Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ  149 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (192)
                      ....++++|.+++|+|+.++..-..  ..+...    ..+.|+++|+||+|+.+...              .....++.+
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~----~~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~   72 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRN--PLLEKI----LGNKPRIIVLNKADLADPKK--------------TKKWLKYFE   72 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCC--hhhHhH----hcCCCEEEEEehhhcCChHH--------------HHHHHHHHH
Confidence            3456778999999999987643222  122222    23689999999999854200              011112222


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ... .+++.+||+++.|++++.+.+...+
T Consensus        73 ~~~-~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          73 SKG-EKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             hcC-CeEEEEECCCcccHHHHHHHHHHHH
Confidence            222 4678999999999999999998875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.58  E-value=1.8e-07  Score=66.26  Aligned_cols=84  Identities=17%  Similarity=0.132  Sum_probs=50.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC--CCCCcccCceeeee-eEE-EEE-CCeEEEEEEEeCCCCCccccc------cccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD--QFPEVYVPTVFENY-VAD-IEV-DSKQVELALWDTAGQEDYDRL------RPLS   73 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~~l~D~~g~~~~~~~------~~~~   73 (192)
                      -.-|.|+|++++|||+|+|+|++.  .+........++.. ..- ... ......+.++||+|.......      ....
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~   86 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA   86 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence            346899999999999999999998  55443222122111 111 111 123568999999996543221      1222


Q ss_pred             CCC--CCEEEEEEECCC
Q psy14754         74 YPD--TDVILMCFSIDS   88 (192)
Q Consensus        74 ~~~--~~~~i~v~d~~~   88 (192)
                      +..  ++.+|+..+...
T Consensus        87 l~~llss~~i~n~~~~~  103 (224)
T cd01851          87 LATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHhCEEEEeccCcc
Confidence            223  787777776654

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK13796 GTPase YqeH; Provisional

Probab=98.54  E-value=9.4e-07  Score=67.08  Aligned_cols=88  Identities=25%  Similarity=0.381  Sum_probs=58.4

Q ss_pred             CCCC-EEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         75 PDTD-VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        75 ~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ...+ .+++|+|+.+..      ..|...+.+...+.|+++|+||+|+.+.....+         ........+++..+.
T Consensus        67 ~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~---------~i~~~l~~~~k~~g~  131 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKN---------KVKNWLRQEAKELGL  131 (365)
T ss_pred             cccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCccCHH---------HHHHHHHHHHHhcCC
Confidence            4444 899999988732      245666666555789999999999965211000         001122333444442


Q ss_pred             --ceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        154 --FAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       154 --~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                        ..++.+||+++.|++++++.+.+.
T Consensus       132 ~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        132 RPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence              257899999999999999999765

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.54  E-value=2.3e-07  Score=79.88  Aligned_cols=112  Identities=21%  Similarity=0.163  Sum_probs=63.0

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCCCccc----C--ceeeeeeEEEEECCeEEEEEEEeCCCCCc--------cccccccc
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFPEVYV----P--TVFENYVADIEVDSKQVELALWDTAGQED--------YDRLRPLS   73 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~   73 (192)
                      .+|+|++|+||||++..- +..++-...    .  ....+..-...+..   ...++||+|..-        ....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            479999999999999886 333332210    0  00101011112222   346999999321        11223332


Q ss_pred             C---------CCCCEEEEEEECCChhh-----h----hchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         74 Y---------PDTDVILMCFSIDSPDS-----L----ENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        74 ~---------~~~~~~i~v~d~~~~~~-----~----~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      +         +..+++|+++|+.+--.     .    ..+...+.+......-..|+.|++||+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            2         35899999999876421     1    1222222222333345899999999999875

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.53  E-value=1.4e-07  Score=70.35  Aligned_cols=96  Identities=15%  Similarity=0.074  Sum_probs=53.6

Q ss_pred             EEEEEEEeCCCCCcccccc----ccc--CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         52 QVELALWDTAGQEDYDRLR----PLS--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      +..+.++||+|........    ...  .-+.|..++|+|+...+.....    ...+...  -..--+++||.|.....
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~----a~~f~~~--~~~~giIlTKlD~~~~~  295 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ----AREFNEA--VGIDGVILTKVDADAKG  295 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH----HHHHHhc--CCCCEEEEeeecCCCCc
Confidence            3568999999965422111    111  1246888999998765321111    1112111  13458999999976522


Q ss_pred             cchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHH
Q psy14754        126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE  172 (192)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  172 (192)
                      .                .........+ .|+..++  +|++++++..
T Consensus       296 G----------------~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        296 G----------------AALSIAYVIG-KPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             c----------------HHHHHHHHHC-cCEEEEe--CCCChhhccc
Confidence            1                2223333344 5877776  6888876643

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.53  E-value=3.6e-07  Score=60.07  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=49.8

Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      .++.+|++++|+|+.++.+...  ..+...+.....++|+++|+||+|+.+..            .  .....+..+..+
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~--~~~~~~~~~~~~   71 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------Q--RKAWAEYFKKEG   71 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------H--HHHHHHHHHhcC
Confidence            4578999999999988754332  23444443333578999999999985421            0  112223333334


Q ss_pred             CceEEEeccCCcCC
Q psy14754        153 AFAYLECSAKSKEG  166 (192)
Q Consensus       153 ~~~~~~~Sa~~~~g  166 (192)
                       .+++++||+++.+
T Consensus        72 -~~ii~iSa~~~~~   84 (141)
T cd01857          72 -IVVVFFSALKENA   84 (141)
T ss_pred             -CeEEEEEecCCCc
Confidence             4789999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.53  E-value=2e-07  Score=67.84  Aligned_cols=96  Identities=11%  Similarity=0.067  Sum_probs=54.9

Q ss_pred             eEEEEEEEeCCCCCccccccc------------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeec
Q psy14754         51 KQVELALWDTAGQEDYDRLRP------------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK  118 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~~~------------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  118 (192)
                      .++.+.++||||.........            ..-...|..++|+|++...  +.+.  ....+.+.  -.+.-+|+||
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~--~~~~f~~~--~~~~g~IlTK  226 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE--QAKVFNEA--VGLTGIILTK  226 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH--HHHHHHhh--CCCCEEEEEc
Confidence            346789999999654322211            1112479999999997642  2221  11222221  1256899999


Q ss_pred             ccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHH
Q psy14754        119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF  171 (192)
Q Consensus       119 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  171 (192)
                      .|....                ...........+ .|+..++  +|++++++-
T Consensus       227 lDe~~~----------------~G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       227 LDGTAK----------------GGIILSIAYELK-LPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             cCCCCC----------------ccHHHHHHHHHC-cCEEEEe--CCCChHhCc
Confidence            997552                122333344445 5877777  677776553

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.52  E-value=2.2e-07  Score=66.67  Aligned_cols=58  Identities=17%  Similarity=0.204  Sum_probs=35.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCccc-C------ceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-P------TVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      -.++++|++|+|||||+|+|.+........ +      ..++.....+...+    -.++||||...+.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence            468899999999999999999864322111 1      11222222233322    2799999965443

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG1534|consensus

Probab=98.50  E-value=1.2e-07  Score=64.82  Aligned_cols=73  Identities=16%  Similarity=0.135  Sum_probs=46.4

Q ss_pred             CCcEEEEeecccccCCccchhhhhhccCC-----------CCC------HHHHHHHHHHcCCceEEEeccCCcCCHHHHH
Q psy14754        109 NVPIILVGNKKDLRNDPNTIKELNKMKQE-----------PVK------PEEGRAMAQKINAFAYLECSAKSKEGVREVF  171 (192)
Q Consensus       109 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  171 (192)
                      ..|-|=|++|+|+....+..+.-.-+.+.           ..+      ......+...++.+.|++....+.+.|+.++
T Consensus       164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL  243 (273)
T KOG1534|consen  164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL  243 (273)
T ss_pred             cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence            79999999999998874432211111110           000      1112234455666788999999999999999


Q ss_pred             HHHHHHHhhh
Q psy14754        172 ETATRAALQV  181 (192)
Q Consensus       172 ~~i~~~~~~~  181 (192)
                      ..|-.++.-.
T Consensus       244 ~~ID~aiQy~  253 (273)
T KOG1534|consen  244 SYIDDAIQYG  253 (273)
T ss_pred             HHHHHHHHhc
Confidence            8887776543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.50  E-value=7.2e-07  Score=65.26  Aligned_cols=91  Identities=20%  Similarity=0.182  Sum_probs=60.7

Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ  149 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (192)
                      ....++.+|++++|+|+.++.+...  ..+...+    .+.|+++|+||+|+.+...             .......+ +
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~-------------~~~~~~~~-~   74 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV-------------TKQWLKYF-E   74 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH-------------HHHHHHHH-H
Confidence            3456788999999999987643322  1233333    3689999999999854210             01111122 2


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ..+ .+++.+||+++.|++++.+.+.+.+.+.
T Consensus        75 ~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        75 EKG-IKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            223 4789999999999999999988877544

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.46  E-value=6.8e-06  Score=62.28  Aligned_cols=154  Identities=18%  Similarity=0.259  Sum_probs=86.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCC-----------------CCc----ccCceeeee----eEEEEE-CCeEEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQF-----------------PEV----YVPTVFENY----VADIEV-DSKQVELALW   58 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~-----------------~~~----~~~~~~~~~----~~~~~~-~~~~~~~~l~   58 (192)
                      .+=|.|+||..+|||||+.+|+....                 ++.    ...++...+    ...+.+ ++-.+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            45589999999999999999976221                 111    011111111    112333 4567889999


Q ss_pred             eCCC--------CC-----c------cccccc----------ccCC--CCCEEEEEEECCC----hhhhhchhhhhHHHH
Q psy14754         59 DTAG--------QE-----D------YDRLRP----------LSYP--DTDVILMCFSIDS----PDSLENIPEKWTPEV  103 (192)
Q Consensus        59 D~~g--------~~-----~------~~~~~~----------~~~~--~~~~~i~v~d~~~----~~~~~~~~~~~~~~~  103 (192)
                      |+.|        +.     +      |....+          ..++  ..-++++.-|.+=    ++++....+.....+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            9998        10     0      111110          0111  2233444433321    345556656667777


Q ss_pred             hhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC--CcCCHHHHHHHHH
Q psy14754        104 KHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK--SKEGVREVFETAT  175 (192)
Q Consensus       104 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i~  175 (192)
                      +..  ++|++|++|-.+-..              .-+.+-..++.+.++ +|++++++.  +.+.|..+++.+.
T Consensus       177 k~i--gKPFvillNs~~P~s--------------~et~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  177 KEI--GKPFVILLNSTKPYS--------------EETQELAEELEEKYD-VPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHh--CCCEEEEEeCCCCCC--------------HHHHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHHHH
Confidence            776  899999999887432              122344556677777 588877664  3444555555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.42  E-value=3.6e-07  Score=67.16  Aligned_cols=59  Identities=20%  Similarity=0.160  Sum_probs=36.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCc-------eeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------VFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      ..++++|++|+|||||+|.|++..........       .++.....+.....   ..++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999986543321111       11222222233222   2589999976653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.41  E-value=7.4e-07  Score=65.87  Aligned_cols=58  Identities=22%  Similarity=0.199  Sum_probs=35.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCc-------eeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------VFENYVADIEVDSKQVELALWDTAGQEDY   66 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   66 (192)
                      ..++++|++|+|||||+|+|++........-.       .++.....+.....   ..++||||...+
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~  229 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF  229 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence            35899999999999999999986543322111       12222222223322   378999996543

>PRK13796 GTPase YqeH; Provisional

Probab=98.41  E-value=4.8e-07  Score=68.67  Aligned_cols=55  Identities=24%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCC-----cccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPE-----VYVPTVFENYVADIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   63 (192)
                      .++.++|.+|+|||||+|+|++.....     ....++++.....+.++.+   ..++||||-
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            479999999999999999998643111     1111222222333333322   379999995

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.40  E-value=6e-07  Score=65.19  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=36.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC------Ccc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP------EVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      -.+++|++|+|||||+|+|......      ... ....+++...-+.+...+   .++||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            4689999999999999999873321      111 122233334444444333   578999976554

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.40  E-value=7.5e-07  Score=67.53  Aligned_cols=111  Identities=14%  Similarity=0.076  Sum_probs=58.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCC-----CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc---------
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFP-----EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP---------   71 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~---------   71 (192)
                      .++.++|.+|+|||||+|+|++....     .....+.++.....+....   .+.++||||-........         
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~~~~~~~l~~~~l~~  231 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINSHQMAHYLDKKDLKY  231 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCChhHhhhhcCHHHHhh
Confidence            47999999999999999999985421     1111122222222333321   257999999543221110         


Q ss_pred             -ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         72 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        72 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                       ..-+......+.++....-.+..+  .++..+..  ++..+.+.+++.+..+
T Consensus       232 ~~~~~~i~~~~~~l~~~q~~~~ggl--~~~d~~~~--~~~~~~~~~~~~~~~h  280 (360)
T TIGR03597       232 ITPKKEIKPKTYQLNPNQTLFLGGL--ARFDYLKG--EKTSFTFYVSNELNIH  280 (360)
T ss_pred             cCCCCccCceEEEeCCCCEEEEceE--EEEEEecC--CceEEEEEccCCceeE
Confidence             011234556666665443222222  22222221  2456677778777655

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.38  E-value=2.7e-06  Score=62.59  Aligned_cols=91  Identities=22%  Similarity=0.240  Sum_probs=60.7

Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ  149 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (192)
                      ....++.+|++|+|+|+.++.+...  ..+...+    .+.|+++|+||+|+.+..             . .....++.+
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~-------------~-~~~~~~~~~   77 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE-------------V-TKKWIEYFE   77 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH-------------H-HHHHHHHHH
Confidence            3456778999999999987643332  1233333    268999999999985410             0 011112222


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ..+ .+++.+||+++.|++++.+.+...+.+.
T Consensus        78 ~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         78 EQG-IKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            223 4788999999999999999988877554

>KOG1424|consensus

Probab=98.37  E-value=4.4e-07  Score=69.66  Aligned_cols=56  Identities=16%  Similarity=0.109  Sum_probs=41.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   63 (192)
                      .+.|.++|-||+||||+||+|.+.+....+..++-+....++.+..   .+.++|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            4889999999999999999999998766644444333333333332   5789999993

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.37  E-value=1.7e-06  Score=58.03  Aligned_cols=21  Identities=33%  Similarity=0.324  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +++.|..|+|||||+++++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            679999999999999998875

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.26  E-value=7.5e-06  Score=62.02  Aligned_cols=84  Identities=18%  Similarity=0.166  Sum_probs=55.7

Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ..+.|.+++|+++..+-... ..+.++......  +.|.+||+||+|+.++.               ......+......
T Consensus       110 aANvD~vliV~s~~p~~~~~-~ldr~L~~a~~~--~i~piIVLNK~DL~~~~---------------~~~~~~~~~~~~g  171 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLR-RIERYLALAWES--GAEPVIVLTKADLCEDA---------------EEKIAEVEALAPG  171 (356)
T ss_pred             EEeCCEEEEEEecCCCCChh-HHHHHHHHHHHc--CCCEEEEEEChhcCCCH---------------HHHHHHHHHhCCC
Confidence            56899999999986332222 223455444443  78889999999997521               0111122222223


Q ss_pred             ceEEEeccCCcCCHHHHHHHHH
Q psy14754        154 FAYLECSAKSKEGVREVFETAT  175 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~  175 (192)
                      ++++.+|++++.|++++..++.
T Consensus       172 ~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        172 VPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             CcEEEEECCCCccHHHHHHHhh
Confidence            6889999999999999999874

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.25  E-value=5.8e-06  Score=55.87  Aligned_cols=107  Identities=20%  Similarity=0.312  Sum_probs=53.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeC-CCCC---------------------
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT-AGQE---------------------   64 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~~---------------------   64 (192)
                      ||++.|++|+||||++++++..-.....  ...-.++..+.-++...-+.+.|. .|..                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~--~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~   78 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGL--PVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL   78 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCG--GEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCC--ccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence            6899999999999999998764321111  122222333334455566666666 3311                     


Q ss_pred             -cccccccccCC----CCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecc
Q psy14754         65 -DYDRLRPLSYP----DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKK  119 (192)
Q Consensus        65 -~~~~~~~~~~~----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  119 (192)
                       .|.......++    .++  ++++|=-.+  ++.....|.+.+.... ++.|++.++.+.
T Consensus        79 e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~  135 (168)
T PF03266_consen   79 ESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKR  135 (168)
T ss_dssp             HHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred             HHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence             01111112222    334  667665544  3333335555555433 468888888777

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.24  E-value=1.3e-06  Score=66.96  Aligned_cols=66  Identities=14%  Similarity=0.035  Sum_probs=38.7

Q ss_pred             EEEEEEEeCCCCCcccccccc------cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         52 QVELALWDTAGQEDYDRLRPL------SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      ++.+.++||||..........      .....+-+++|+|+...+.-..    ....+...  -.+.-+|+||.|...
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~----~a~~F~~~--~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA----QAKAFKDS--VDVGSVIITKLDGHA  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH----HHHHHHhc--cCCcEEEEECccCCC
Confidence            568899999996443221111      1225688999999876532211    12222221  236688899999754

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0469|consensus

Probab=98.24  E-value=1.5e-06  Score=66.87  Aligned_cols=113  Identities=17%  Similarity=0.138  Sum_probs=76.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCC------------CcccCc---eeeeeeEEE----------------EECCeEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFP------------EVYVPT---VFENYVADI----------------EVDSKQVE   54 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~---~~~~~~~~~----------------~~~~~~~~   54 (192)
                      .++-|+.+...|||||...|....-.            ++..-.   ..+..+..+                .-+..+..
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            46788999999999999888653211            110000   000000000                11345678


Q ss_pred             EEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        55 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      +.++|.|||.+|.+.....++-.|++++|+|..+.-..+.- ..+.+.+.+   .+.-++++||+|..
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDRA  163 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhHH
Confidence            99999999999999999999999999999999887655543 234444443   45668899999974

>KOG1533|consensus

Probab=98.20  E-value=2.5e-06  Score=59.49  Aligned_cols=121  Identities=15%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             EEEEEEeCCCCCcccccc------cccCCCCCEEEEEEECC------ChhhhhchhhhhHHHHhhh-CCCCcEEEEeecc
Q psy14754         53 VELALWDTAGQEDYDRLR------PLSYPDTDVILMCFSID------SPDSLENIPEKWTPEVKHF-CPNVPIILVGNKK  119 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  119 (192)
                      -...++|+|||.++....      -..++..+.-+.+++..      ++..+-..   ++-.+... .-..|-|=|+.|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK~  173 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSKA  173 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhHh
Confidence            467899999986532211      11233455555555544      34443332   22122211 1378999999999


Q ss_pred             cccCCccch----------hhhh------hccCC----CCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754        120 DLRNDPNTI----------KELN------KMKQE----PVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus       120 D~~~~~~~~----------~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      |+...-...          ..+.      +..++    ....++.-++.+.++-+.|...+..+.+.+-.+...|-+
T Consensus       174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk  250 (290)
T KOG1533|consen  174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK  250 (290)
T ss_pred             HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence            997654411          1111      11111    111233334445555556666666666666666655543

>KOG3859|consensus

Probab=98.19  E-value=3.4e-06  Score=60.29  Aligned_cols=117  Identities=21%  Similarity=0.282  Sum_probs=73.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-----EEEECCeEEEEEEEeCCCCCc-------ccccc-
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-----DIEVDSKQVELALWDTAGQED-------YDRLR-   70 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~D~~g~~~-------~~~~~-   70 (192)
                      ..++|+.+|..|.|||||+..|++-.+...+.+........     ...-.+-..+++++||.|.-+       |..+. 
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            46899999999999999999999988877654443332211     112235567899999999211       11000 


Q ss_pred             ------c-------------ccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         71 ------P-------------LSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        71 ------~-------------~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                            .             ..+.  ..+++++.+..+. .++..++-..+..+..   ...+|=++-|.|....
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds---kVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS---KVNIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh---hhhhHHHHHHhhhhhH
Confidence                  0             0111  3567777776664 5666665444444443   5677777788887653

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.17  E-value=4.8e-06  Score=44.90  Aligned_cols=44  Identities=34%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             CCCEEEEEEECCChh--hhhchhhhhHHHHhhhCCCCcEEEEeeccc
Q psy14754         76 DTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKD  120 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  120 (192)
                      -.++++|++|.+...  +++.. -.+...++..+++.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            468999999999854  34443 257788888889999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.17  E-value=6.1e-06  Score=62.53  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +..|+++|+.|+||||++..|..
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999988864

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.17  E-value=1.5e-05  Score=62.67  Aligned_cols=161  Identities=13%  Similarity=0.131  Sum_probs=79.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCC------------CcccCce-------eeeeeEEEEE------------CCeEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFP------------EVYVPTV-------FENYVADIEV------------DSKQVE   54 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~~-------~~~~~~~~~~------------~~~~~~   54 (192)
                      -.|+++|+.|+||||++.+|......            +.+....       .......+..            ......
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D  430 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK  430 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence            47889999999999999887642110            0000000       0000000110            113467


Q ss_pred             EEEEeCCCCCccccccc------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy14754         55 LALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI  128 (192)
Q Consensus        55 ~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  128 (192)
                      +.|+||+|.........      .... ....++|++.+..  ...+    ...++.+....+.-+|+||.|....    
T Consensus       431 LVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl----~eii~~f~~~~~~gvILTKlDEt~~----  499 (559)
T PRK12727        431 LVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDL----DEVVRRFAHAKPQGVVLTKLDETGR----  499 (559)
T ss_pred             EEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHH----HHHHHHHHhhCCeEEEEecCcCccc----
Confidence            89999999643221100      0111 2345677776642  2222    2222222223577899999996441    


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC--cCCHHHH-HHHHHHHHhhhccccccccc
Q psy14754        129 KELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS--KEGVREV-FETATRAALQVKKKKKGRCR  190 (192)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~gi~~~-~~~i~~~~~~~~~~~~~~c~  190 (192)
                                  ...........+ .|+..++.-.  .+++... -..+++.+...++.....|.
T Consensus       500 ------------lG~aLsv~~~~~-LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~~~~~  551 (559)
T PRK12727        500 ------------FGSALSVVVDHQ-MPITWVTDGQRVPDDLHRANAASLVLRLEDLRRAADKPCT  551 (559)
T ss_pred             ------------hhHHHHHHHHhC-CCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHhhccCCCC
Confidence                        233334444444 4655554422  2233221 23366666666666666663

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.12  E-value=6.5e-07  Score=62.05  Aligned_cols=64  Identities=20%  Similarity=0.099  Sum_probs=35.9

Q ss_pred             EEEEEEeCCCCCcccccc-------cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         53 VELALWDTAGQEDYDRLR-------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~-------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      +.+.++||||........       .... ..+-+++|++++...  +.+. ........   -.+--+++||.|...
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~--~~~~-~~~~~~~~---~~~~~lIlTKlDet~  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQ--EDLE-QALAFYEA---FGIDGLILTKLDETA  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGG--HHHH-HHHHHHHH---SSTCEEEEESTTSSS
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccCh--HHHH-HHHHHhhc---ccCceEEEEeecCCC
Confidence            568999999965533211       1111 567889999988753  2221 22222222   123467899999654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=2.6e-05  Score=59.07  Aligned_cols=23  Identities=17%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.++++|++|+||||++.+|...
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998753

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.11  E-value=9.6e-06  Score=53.69  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=35.3

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccc
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD  120 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  120 (192)
                      ++.+.++||+|...   ....++..+|.++++....-.+.+.-.+  + ..+     ..--++++||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k--~-~~~-----~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK--A-GIM-----EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh--h-hHh-----hhcCEEEEeCCC
Confidence            46789999988542   2234777889888887665332222221  1 111     234489999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.07  E-value=6.4e-06  Score=63.71  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=37.6

Q ss_pred             EEEEEEeCCCCCcccccc------cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccC
Q psy14754         53 VELALWDTAGQEDYDRLR------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRN  123 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  123 (192)
                      ..+.++||||........      ......+|.+++|+|++...   +.    ......+.+..+ .-+|+||.|...
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a----v~~a~~F~~~l~i~gvIlTKlD~~a  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA----KNQAKAFHEAVGIGGIIITKLDGTA  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH----HHHHHHHHhcCCCCEEEEecccCCC
Confidence            378999999965532211      11233678999999987642   11    122222222233 368889999754

>PRK10867 signal recognition particle protein; Provisional

Probab=98.05  E-value=7.6e-06  Score=63.20  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=18.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~   26 (192)
                      +.-|+++|++|+||||++..|.
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA  121 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLA  121 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHH
Confidence            5678999999999999776654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.03  E-value=4.4e-05  Score=58.77  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -.|+++|+.|+||||++..|.+
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>KOG2484|consensus

Probab=98.02  E-value=5.2e-06  Score=62.07  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=42.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   63 (192)
                      ..+++.|+|-|++||||+||+|...........++.+.....+..+   -.+.|.|.||.
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld---k~i~llDsPgi  307 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD---KKIRLLDSPGI  307 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc---CCceeccCCce
Confidence            5789999999999999999999998765444334444444444433   36899999993

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.02  E-value=4.2e-06  Score=57.22  Aligned_cols=67  Identities=28%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             EEEEEEEeCCCCCccccc------ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         52 QVELALWDTAGQEDYDRL------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      .....++++.|...-...      .... -..+.++.|+|+.+-.........+...+.     .--+|++||+|+.+.
T Consensus        84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~-~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-----~ADvIvlnK~D~~~~  156 (178)
T PF02492_consen   84 RPDRIIIETSGLADPAPLILQDPPLKED-FRLDSIITVVDATNFDELENIPELLREQIA-----FADVIVLNKIDLVSD  156 (178)
T ss_dssp             C-SEEEEEEECSSGGGGHHHHSHHHHHH-ESESEEEEEEEGTTHGGHTTHCHHHHHHHC-----T-SEEEEE-GGGHHH
T ss_pred             CcCEEEECCccccccchhhhcccccccc-ccccceeEEeccccccccccchhhhhhcch-----hcCEEEEeccccCCh
Confidence            345677788884333322      0001 145889999999875444444444444443     334899999999873

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=2.8e-05  Score=63.73  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -|+++|+.|+||||++.+|...
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhh
Confidence            5799999999999999888753

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.01  E-value=6.8e-05  Score=54.72  Aligned_cols=92  Identities=22%  Similarity=0.252  Sum_probs=62.3

Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      ..-+.|-.++++.+.+|+--..+.+.++-.....  ++..+|++||+|+..+.+            ....+.......++
T Consensus        76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~------------~~~~~~~~~y~~~g  141 (301)
T COG1162          76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE------------AAVKELLREYEDIG  141 (301)
T ss_pred             cccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH------------HHHHHHHHHHHhCC
Confidence            3446788888888888753333323444444433  788899999999987422            11123344555566


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                       ++++.+|+++++|++++...+...+.
T Consensus       142 -y~v~~~s~~~~~~~~~l~~~l~~~~s  167 (301)
T COG1162         142 -YPVLFVSAKNGDGLEELAELLAGKIT  167 (301)
T ss_pred             -eeEEEecCcCcccHHHHHHHhcCCeE
Confidence             78999999999999999998876543

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.99  E-value=0.00011  Score=54.71  Aligned_cols=23  Identities=35%  Similarity=0.264  Sum_probs=19.7

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++-|--|||||||++.++....
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~   26 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRD   26 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccC
Confidence            57889999999999999987543

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.98  E-value=5.7e-05  Score=57.21  Aligned_cols=112  Identities=19%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCC--CCcccCc--eeeeeeEE---------------E--EE----------CCeEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPT--VFENYVAD---------------I--EV----------DSKQV   53 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~--~~~~~~~~---------------~--~~----------~~~~~   53 (192)
                      .-.|+++||.|+||||.+.+|.....  .....-.  +++++...               +  ..          .....
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            34689999999999999988765433  1111111  11111110               0  00          12334


Q ss_pred             EEEEEeCCCCCcccccccc----cCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcE-EEEeecccccC
Q psy14754         54 ELALWDTAGQEDYDRLRPL----SYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRN  123 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~----~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~  123 (192)
                      .+.++||.|...+......    ++.  ...-..+|++++..  ...+. ..+..++    ..|+ -+++||.|-..
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlk-ei~~~f~----~~~i~~~I~TKlDET~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLK-EIIKQFS----LFPIDGLIFTKLDETT  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHH-HHHHHhc----cCCcceeEEEcccccC
Confidence            7899999997665432211    111  23445666777654  33332 2333333    3444 68999999654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.96  E-value=3.5e-05  Score=52.31  Aligned_cols=44  Identities=30%  Similarity=0.239  Sum_probs=29.5

Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      |++++|+|+.++.+-.  ...+...+.-...+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCR--CPQVEEAVLQAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCC--CHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence            7899999998863222  2344444211112689999999999965

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR00959 ffh signal recognition particle protein

Probab=97.95  E-value=2.1e-05  Score=60.71  Aligned_cols=66  Identities=17%  Similarity=0.039  Sum_probs=37.0

Q ss_pred             EEEEEEEeCCCCCcccccccc------cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         52 QVELALWDTAGQEDYDRLRPL------SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      ++.+.++||||..........      ..-..+.+++|+|+...+...    .....+....  ...-+|+||.|...
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~----~~a~~f~~~v--~i~giIlTKlD~~~  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAV----NTAKTFNERL--GLTGVVLTKLDGDA  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHH----HHHHHHHhhC--CCCEEEEeCccCcc
Confidence            457899999996433221111      122468889999987643221    2222332211  23468899999643

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.93  E-value=2.9e-05  Score=58.69  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .-.++++|+.|+||||++.++..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999988764

>KOG4273|consensus

Probab=97.90  E-value=0.00042  Score=49.16  Aligned_cols=173  Identities=13%  Similarity=0.171  Sum_probs=97.3

Q ss_pred             ceeEEEEcCCCC--chhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          5 RKKLVIVGDGAC--GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         5 ~~~i~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +.-++|+|-+|+  ||-+++.+|....+.+.......+.+ .-.+...+-...+.+.-.+-.+.+.-......+...+++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            456789999998  99999999998887665433222211 111111111122333333332222222222334567899


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCC-cEEEEeecccccCCccc---------------hhhhhhccCCC-------
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNV-PIILVGNKKDLRNDPNT---------------IKELNKMKQEP-------  138 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~---------------~~~~~~~~~~~-------  138 (192)
                      ++||.+....+..+ +.|+.-..-+  .. -++.++||.|..+.--.               ...+..+....       
T Consensus        84 mvfdlse~s~l~al-qdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs  160 (418)
T KOG4273|consen   84 MVFDLSEKSGLDAL-QDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS  160 (418)
T ss_pred             EEEeccchhhhHHH-Hhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence            99999988777776 4676533221  22 23678899998642111               01111111111       


Q ss_pred             ----------CCHHHHHHHHHHcCCceEEEeccCCc------------CCHHHHHHHHHHHHhhh
Q psy14754        139 ----------VKPEEGRAMAQKINAFAYLECSAKSK------------EGVREVFETATRAALQV  181 (192)
Q Consensus       139 ----------~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~~~~~i~~~~~~~  181 (192)
                                .......+++...+ +.+++.++-+.            .|++.+|..+..++...
T Consensus       161 sllgsedasldirga~lewc~e~~-~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg  224 (418)
T KOG4273|consen  161 SLLGSEDASLDIRGAALEWCLEHG-FEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG  224 (418)
T ss_pred             cccccccchhhHHHHHHHHHHhcC-ceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence                      11233446677766 68898887433            48899998888877654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.90  E-value=0.00011  Score=57.57  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -++++|+.|+||||++.+|..
T Consensus       258 Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        258 VFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            489999999999999988875

>PRK13695 putative NTPase; Provisional

Probab=97.89  E-value=0.00039  Score=47.36  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ++|++.|++|+|||||+..+.+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999986543

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.86  E-value=1.3e-05  Score=54.74  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .||+|+|+|||||||+..+|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999887

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.86  E-value=1.3e-05  Score=51.07  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

...

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.85  E-value=2.8e-05  Score=52.88  Aligned_cols=66  Identities=14%  Similarity=0.060  Sum_probs=37.4

Q ss_pred             EEEEEEEeCCCCCccccccc----c--cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         52 QVELALWDTAGQEDYDRLRP----L--SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~----~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      +..+.++|+||...+.....    .  .....+.+++|+|.....+..   + +...+.+.. + ...+|+||.|...
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~---~-~~~~~~~~~-~-~~~viltk~D~~~  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV---N-QAKAFNEAL-G-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH---H-HHHHHHhhC-C-CCEEEEECCcCCC
Confidence            44688899999643221111    1  112479999999986543221   1 222222222 2 3578889999765

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=9.3e-05  Score=63.30  Aligned_cols=110  Identities=20%  Similarity=0.139  Sum_probs=59.4

Q ss_pred             EEEcCCCCchhHHHHHHhhCCCCCc--ccCc----eeeeeeEEEEECCeEEEEEEEeCCCCCc--------ccccccc--
Q psy14754          9 VIVGDGACGKTCLLIVFSKDQFPEV--YVPT----VFENYVADIEVDSKQVELALWDTAGQED--------YDRLRPL--   72 (192)
Q Consensus         9 ~v~G~~~~GKSsli~~l~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~--   72 (192)
                      +|+|++|+||||++..--. .|+..  ....    .++..+. -.+.   -.-.++||.|...        ....|..  
T Consensus       129 ~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cd-wwf~---deaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         129 MVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCD-WWFT---DEAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             EEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccC-cccc---cceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            7899999999999865322 22211  1000    1111110 1111   2457889998321        1222322  


Q ss_pred             -------cCCCCCEEEEEEECCChhhhhch---------hhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         73 -------SYPDTDVILMCFSIDSPDSLENI---------PEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        73 -------~~~~~~~~i~v~d~~~~~~~~~~---------~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                             ..+..+++|+.+|+.+--+.+..         ...+.++-....-..|+.|++||.|+.+
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                   23468999999999764222211         1111112222234799999999999976

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=6.9e-05  Score=57.45  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .-++++|++||||||++.+|..
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999988864

>PRK08118 topology modulation protein; Reviewed

Probab=97.81  E-value=1.8e-05  Score=53.57  Aligned_cols=23  Identities=30%  Similarity=0.671  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .||+|+|++|||||||...|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999988764

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.00026  Score=54.12  Aligned_cols=113  Identities=17%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCC--------------CcccCce-------eeeeeEEEEE------------CCe
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFP--------------EVYVPTV-------FENYVADIEV------------DSK   51 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~-------~~~~~~~~~~------------~~~   51 (192)
                      +-.|+++|+.|+||||.+.++...-..              +.+....       .......+..            ...
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            457899999999999999887642110              0000000       0000000000            123


Q ss_pred             EEEEEEEeCCCCCccccc----ccccCC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         52 QVELALWDTAGQEDYDRL----RPLSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~----~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      ++.+.++||+|.......    ....+.   ...-.++|+|++..  ...+    ...+..+..--+--+++||.|-..
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~----~~~~~~~~~~~~~~~I~TKlDet~  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDV----KEIFHQFSPFSYKTVIFTKLDETT  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHH----HHHHHHhcCCCCCEEEEEeccCCC
Confidence            467899999996543211    111111   12357899998875  2222    233333322235689999999654

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.80  E-value=2.3e-05  Score=54.98  Aligned_cols=28  Identities=21%  Similarity=0.251  Sum_probs=25.2

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+.....|+|.|++|||||||.+.|.+.
T Consensus         2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          2 MMKKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            6678899999999999999999998874

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.79  E-value=0.00032  Score=47.95  Aligned_cols=66  Identities=24%  Similarity=0.288  Sum_probs=45.7

Q ss_pred             eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      ..+.+.++|+|+....  .....+..+|.+++++..+. .+..... .+.+.+...  +.|+.+|+||.|..
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~-~~~~~l~~~--~~~~~vV~N~~~~~  156 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLE-RAVELVRHF--GIPVGVVINKYDLN  156 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHH-HHHHHHHHc--CCCEEEEEeCCCCC
Confidence            4578999999975332  23345678999999998774 3455543 455555544  67889999999854

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.79  E-value=0.00016  Score=50.71  Aligned_cols=62  Identities=23%  Similarity=0.300  Sum_probs=40.9

Q ss_pred             EEEEEeCC-CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCC-CcEEEEeeccccc
Q psy14754         54 ELALWDTA-GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR  122 (192)
Q Consensus        54 ~~~l~D~~-g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~  122 (192)
                      .+.+.||- |.+.|.   +...+++|.+|.|+|.+- .++... +....+....  + .++.+|+||.|-.
T Consensus       135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~el--g~k~i~~V~NKv~e~  198 (255)
T COG3640         135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEEL--GIKRIFVVLNKVDEE  198 (255)
T ss_pred             cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHh--CCceEEEEEeeccch
Confidence            45555553 333332   345678999999999885 455555 3455555554  4 8999999999954

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.78  E-value=7.4e-05  Score=57.93  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .++++|++|+||||++..|..
T Consensus       223 ~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        223 VVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999877653

>PRK07261 topology modulation protein; Provisional

Probab=97.76  E-value=2.4e-05  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .||+|+|++|||||||...+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998754

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.76  E-value=3.1e-05  Score=53.31  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .=|+++|++|||||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            448999999999999999998754

>KOG2485|consensus

Probab=97.75  E-value=4.3e-05  Score=55.60  Aligned_cols=58  Identities=21%  Similarity=0.293  Sum_probs=36.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCc------ccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV------YVPTVFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      .++++.|+|-||+|||||+|++........      ..|..+......+.+.. .-.+.+.||||
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPG  205 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPG  205 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCC
Confidence            578999999999999999998765332221      12222222222233332 23589999999

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.74  E-value=3.3e-05  Score=42.72  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      ..+|.|+.||||||++.++...-+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc
Confidence            389999999999999998765433

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.73  E-value=9.3e-05  Score=53.81  Aligned_cols=66  Identities=20%  Similarity=0.100  Sum_probs=37.1

Q ss_pred             EEEEEEEeCCCCCccccc----ccccC--CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         52 QVELALWDTAGQEDYDRL----RPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      ...+.++||||.......    +...+  -..+-.++|++++...  ++    ....++.+..-.+--+++||.|...
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d----~~~~~~~f~~~~~~~~I~TKlDet~  225 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KD----MIEIITNFKDIHIDGIVFTKFDETA  225 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HH----HHHHHHHhCCCCCCEEEEEeecCCC
Confidence            467899999996542211    11111  1356689999986421  11    1222222222344579999999755

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.71  E-value=3.2e-05  Score=52.32  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .=+++.||+|+||||++++|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            347899999999999999999877

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.70  E-value=3.1e-05  Score=50.85  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+++|+|||||||++..+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998854

...

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.69  E-value=0.00036  Score=52.13  Aligned_cols=21  Identities=29%  Similarity=0.316  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+|.|.-|||||||+|+++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          7 TLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            567899999999999999864

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.66  E-value=5.1e-05  Score=43.30  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=19.6

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |++.|++||||||+.+++...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999988653

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.65  E-value=6.4e-05  Score=52.65  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ...-|+|+|++|||||||+++|....
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            45668899999999999999997643

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.62  E-value=3.9e-05  Score=51.63  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999866

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.61  E-value=6.6e-05  Score=52.80  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      ++|+|++|||||||+|-+-+-..+
T Consensus        34 vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhcccCC
Confidence            789999999999999988776543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.61  E-value=7e-05  Score=51.93  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPE   32 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~   32 (192)
                      .++++||+|||||||+..+.+-..++
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~~~   55 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEEPD   55 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcCCC
Confidence            47899999999999999998776544

>KOG0780|consensus

Probab=97.60  E-value=4.6e-05  Score=57.07  Aligned_cols=97  Identities=13%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccC----------------------ceeeeeeE-----E--------EEEC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP----------------------TVFENYVA-----D--------IEVD   49 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------------~~~~~~~~-----~--------~~~~   49 (192)
                      +--|.++|..|+||||.+.+|........+..                      ...+.+..     .        -.+.
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK  180 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK  180 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence            34588999999999999977654211111100                      00111100     0        0123


Q ss_pred             CeEEEEEEEeCCCCCccc-----ccc-cccCCCCCEEEEEEECCChhhhhchhhhhHH
Q psy14754         50 SKQVELALWDTAGQEDYD-----RLR-PLSYPDTDVILMCFSIDSPDSLENIPEKWTP  101 (192)
Q Consensus        50 ~~~~~~~l~D~~g~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  101 (192)
                      .+++.+.++||+|.....     ... ..-.-..|-+|+|+|++-.++-......+..
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~  238 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE  238 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence            566789999999953321     111 1122357999999999887655444334443

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.59  E-value=0.00039  Score=42.09  Aligned_cols=69  Identities=20%  Similarity=0.239  Sum_probs=44.6

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-ccccCCCCCEEEEEEEC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-RPLSYPDTDVILMCFSI   86 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~   86 (192)
                      +++.|..|+||||+...+...-.....         +...++    .+.++|+++....... .......+|.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999999887654321111         111122    7899999986443321 13455678999999876


Q ss_pred             CCh
Q psy14754         87 DSP   89 (192)
Q Consensus        87 ~~~   89 (192)
                      ...
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            653

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14530 adenylate kinase; Provisional

Probab=97.58  E-value=6.4e-05  Score=53.01  Aligned_cols=23  Identities=13%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..+|+|+|+|||||||+.+.|..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998864

>KOG2423|consensus

Probab=97.57  E-value=6.9e-05  Score=56.37  Aligned_cols=85  Identities=12%  Similarity=0.107  Sum_probs=0.0

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC--CCcccccccccCCCCCE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG--QEDYDRLRPLSYPDTDV   79 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--~~~~~~~~~~~~~~~~~   79 (192)
                      +...+-|.++|.||+||||++|.|-...+.....-++.+...   .+---...+-++|+||  -..-.+.....+   -+
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVW---QYItLmkrIfLIDcPGvVyps~dset~ivL---kG  377 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVW---QYITLMKRIFLIDCPGVVYPSSDSETDIVL---KG  377 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHH---HHHHHHhceeEecCCCccCCCCCchHHHHh---hc


Q ss_pred             EEEEEECCChhhh
Q psy14754         80 ILMCFSIDSPDSL   92 (192)
Q Consensus        80 ~i~v~d~~~~~~~   92 (192)
                      ++=|=++.+++..
T Consensus       378 vVRVenv~~pe~y  390 (572)
T KOG2423|consen  378 VVRVENVKNPEDY  390 (572)
T ss_pred             eeeeeecCCHHHH

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.54  E-value=7.9e-05  Score=53.01  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=23.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ..++|++|+|++|||||+|+..++...
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            457899999999999999999988653

This is thought to be an ATPase involved in viral DNA packaging [].

>KOG3347|consensus

Probab=97.54  E-value=7.2e-05  Score=48.72  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=22.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +...+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            4678999999999999999999874

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.53  E-value=0.0001  Score=52.27  Aligned_cols=25  Identities=32%  Similarity=0.628  Sum_probs=21.4

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFPE   32 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~~   32 (192)
                      |+++|++|||||||++.+.+-..+.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~p~   56 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEKPT   56 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCC
Confidence            7899999999999999998865433

>PRK14531 adenylate kinase; Provisional

Probab=97.52  E-value=8.9e-05  Score=50.94  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +.+|+++|+|||||||+...+...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999988654

>PRK01889 GTPase RsgA; Reviewed

Probab=97.51  E-value=0.00011  Score=55.79  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=22.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      -+++++|.+|+|||||+|.+.+....
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~~  221 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEVQ  221 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhccc
Confidence            37899999999999999999975543

>PRK06217 hypothetical protein; Validated

Probab=97.51  E-value=9e-05  Score=50.93  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+|+|+|.+||||||+..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998864

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.51  E-value=0.00021  Score=46.80  Aligned_cols=106  Identities=11%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             EEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCC
Q psy14754          9 VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS   88 (192)
Q Consensus         9 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   88 (192)
                      +.-|..|+||||+...+...-.......-..+-..   ....-.+.+.++|+|+...  ......+..+|.++++.+.+.
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh
Confidence            34578899999998665542111110000000000   0000116789999998532  233456788999999988764


Q ss_pred             hhhhhchhhhhHHHHhhhCCCCcEEEEeecccc
Q psy14754         89 PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL  121 (192)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  121 (192)
                       .++.... ..++.+.......++.+++|+.+.
T Consensus        79 -~s~~~~~-~~l~~l~~~~~~~~~~lVvN~~~~  109 (139)
T cd02038          79 -TSITDAY-ALIKKLAKQLRVLNFRVVVNRAES  109 (139)
T ss_pred             -hHHHHHH-HHHHHHHHhcCCCCEEEEEeCCCC
Confidence             4444442 333444333346788899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.50  E-value=7e-05  Score=57.04  Aligned_cols=92  Identities=17%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC----CC------CCcccCce------------eeeeeE-----EE--------EE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD----QF------PEVYVPTV------------FENYVA-----DI--------EV   48 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~----~~------~~~~~~~~------------~~~~~~-----~~--------~~   48 (192)
                      .+..|+++|..||||||.+.+|...    ..      .+.+.|.-            .+.+..     .+        ..
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a  178 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA  178 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence            3667999999999999999776431    00      11111110            000000     00        01


Q ss_pred             CCeEEEEEEEeCCCCCcccccc------cccCCCCCEEEEEEECCChhhhhch
Q psy14754         49 DSKQVELALWDTAGQEDYDRLR------PLSYPDTDVILMCFSIDSPDSLENI   95 (192)
Q Consensus        49 ~~~~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~   95 (192)
                      ....+.+.++||+|........      ....-+.|=+++|+|+.-.+.-.+.
T Consensus       179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~  231 (451)
T COG0541         179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT  231 (451)
T ss_pred             HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH
Confidence            1233578999999964433221      1122367889999999887544443

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.49  E-value=0.00012  Score=51.27  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=24.5

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |+...--|+++|++|||||||++.+.+..
T Consensus         1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          1 MMRRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            55566679999999999999999988753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.49  E-value=9.4e-05  Score=48.17  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++|+|+.|+|||||++.+.+...
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EEEEEccCCCccccceeeeccccc
Confidence            589999999999999999988754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.46  E-value=0.00011  Score=49.65  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .++|+|++|+|||||+|-+.+=..+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~P   51 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFETP   51 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccCC
Confidence            6899999999999999988775443

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.45  E-value=0.00012  Score=47.89  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=19.4

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK03839 putative kinase; Provisional

Probab=97.45  E-value=0.00012  Score=50.19  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +|+++|.|||||||+..+|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988764

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.43  E-value=0.00012  Score=46.98  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998765

...

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.00013  Score=54.51  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=21.6

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFPE   32 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~~   32 (192)
                      ++++||+|||||||++.+.+-..+.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~~~   56 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEEPT   56 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCC
Confidence            7899999999999999999866543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.42  E-value=0.00014  Score=46.83  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999988764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.42  E-value=0.00022  Score=48.81  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -|+++|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            48999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.41  E-value=0.00013  Score=49.82  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++|+|++||||||+++.|....
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999987753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.41  E-value=0.00014  Score=45.09  Aligned_cols=20  Identities=35%  Similarity=0.514  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCchhHHHHHHh
Q psy14754          7 KLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~   26 (192)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            58999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.39  E-value=0.00016  Score=51.42  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..+||+|+|+|||||||+...|...
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.39  E-value=0.00016  Score=46.76  Aligned_cols=27  Identities=30%  Similarity=0.464  Sum_probs=23.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPE   32 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~   32 (192)
                      -.++++|++|+||||++..+...-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            468999999999999999998766544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08233 hypothetical protein; Provisional

Probab=97.39  E-value=0.00018  Score=49.25  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+-|+|.|.+|||||||.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            466889999999999999999864

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.39  E-value=0.00015  Score=47.45  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .|+|+|+.|||||||+..|.+.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999987653

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.39  E-value=0.00014  Score=50.06  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++|+|++|||||||++.|....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999997653

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.38  E-value=0.00015  Score=50.44  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14532 adenylate kinase; Provisional

Probab=97.37  E-value=0.00016  Score=49.80  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +|+++|+|||||||+..+|...
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998753

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.36  E-value=0.00022  Score=50.04  Aligned_cols=28  Identities=14%  Similarity=0.190  Sum_probs=25.1

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |-+.++.|+|.|.+||||||+++.|...
T Consensus         1 ~~~~~~~igitG~igsGKSt~~~~l~~~   28 (208)
T PRK14731          1 MRSLPFLVGVTGGIGSGKSTVCRFLAEM   28 (208)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHC
Confidence            6678899999999999999999998864

>TIGR00235 udk uridine kinase

Probab=97.35  E-value=0.00021  Score=50.08  Aligned_cols=25  Identities=20%  Similarity=0.137  Sum_probs=21.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...-|+|.|++|||||||++.+.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999998764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.34  E-value=0.00022  Score=48.25  Aligned_cols=25  Identities=28%  Similarity=0.169  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ..-+.|+|++|||||||++++...-
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHH
Confidence            4457999999999999999988653

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.34  E-value=0.00018  Score=49.48  Aligned_cols=21  Identities=24%  Similarity=0.252  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -|+++|++||||||+++.+..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13949 shikimate kinase; Provisional

Probab=97.33  E-value=0.0002  Score=48.54  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +|+|+|++||||||+...+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999987653

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.32  E-value=0.0002  Score=49.30  Aligned_cols=25  Identities=36%  Similarity=0.437  Sum_probs=21.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .-.++++|++|||||||++.+++..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3469999999999999999998754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.32  E-value=0.00053  Score=44.33  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.32  E-value=0.00021  Score=48.73  Aligned_cols=21  Identities=24%  Similarity=0.221  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~   26 (192)
                      -.++++|+.|+|||||++.++
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.32  E-value=0.00026  Score=48.29  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .++++|+.|+|||||++.+.+...+
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~~p   51 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIP   51 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            5889999999999999999886543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.32  E-value=0.00019  Score=49.60  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +|+|+|+|||||||+...|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.32  E-value=0.00018  Score=50.89  Aligned_cols=21  Identities=29%  Similarity=0.270  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999988764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK02496 adk adenylate kinase; Provisional

Probab=97.31  E-value=0.00023  Score=48.94  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+|+|+|+|||||||+...|...
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~   24 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEH   24 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988753

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.30  E-value=0.00025  Score=53.39  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=23.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      ..+|+|.|+.|||||||+++|+..-..
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i~~  188 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAIPP  188 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHcccCC
Confidence            578999999999999999999876543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.30  E-value=0.00021  Score=49.76  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=20.1

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      |+|.|++||||||+++.++....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999876543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK15453 phosphoribulokinase; Provisional

Probab=97.30  E-value=0.00027  Score=51.42  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=24.1

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      |+....-|+|.|.+||||||+.+++..
T Consensus         1 Ms~k~piI~ItG~SGsGKTTva~~l~~   27 (290)
T PRK15453          1 MSAKHPIIAVTGSSGAGTTTVKRAFEK   27 (290)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            777889999999999999999998753

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.28  E-value=0.00023  Score=48.80  Aligned_cols=21  Identities=14%  Similarity=0.295  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+++|+|||||||+..+|...
T Consensus         2 i~i~G~pGsGKst~a~~la~~   22 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVEN   22 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.27  E-value=0.00023  Score=47.59  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~   26 (192)
                      ++|+|.|.||+||||+.++|.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            479999999999999999987

>TIGR01351 adk adenylate kinases

Probab=97.27  E-value=0.00024  Score=49.95  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ||+|+|+|||||||+...|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.00025  Score=49.86  Aligned_cols=20  Identities=30%  Similarity=0.559  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchhHHHHHHhh
Q psy14754          8 LVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~   27 (192)
                      |+++|++|||||||+..+.+
T Consensus        33 VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          33 VAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            79999999999999999887

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.24  E-value=0.00034  Score=49.12  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|+|||||++.+.+...
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK08356 hypothetical protein; Provisional

Probab=97.24  E-value=0.00035  Score=48.53  Aligned_cols=27  Identities=30%  Similarity=0.380  Sum_probs=22.3

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      |-.....|+++|++||||||+.+.|..
T Consensus         1 ~~~~~~~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          1 MGVEKMIVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344556799999999999999999954

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.24  E-value=0.00028  Score=52.81  Aligned_cols=94  Identities=22%  Similarity=0.254  Sum_probs=62.8

Q ss_pred             eCCCCC-cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCC
Q psy14754         59 DTAGQE-DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQE  137 (192)
Q Consensus        59 D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  137 (192)
                      +.||+. .+.......+...|.++.|+|+.++.+...      ..+.++..+.|.++|+||.|+.+.             
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~------~~l~~~v~~k~~i~vlNK~DL~~~-------------   76 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN------PELERIVKEKPKLLVLNKADLAPK-------------   76 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC------ccHHHHHccCCcEEEEehhhcCCH-------------
Confidence            446753 455566677889999999999999865333      333333446777999999999872             


Q ss_pred             CCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHH
Q psy14754        138 PVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE  172 (192)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  172 (192)
                      .....+...+.+..+ ...+.+++..+.+...+..
T Consensus        77 ~~~~~W~~~~~~~~~-~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          77 EVTKKWKKYFKKEEG-IKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HHHHHHHHHHHhcCC-CccEEEEeecccCccchHH
Confidence            234445555555544 3556788887777666664

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.23  E-value=0.00038  Score=48.69  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+...
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            579999999999999999988653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.23  E-value=0.00034  Score=47.55  Aligned_cols=24  Identities=17%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..+|+++|++||||||+...+...
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHH
Confidence            457999999999999999998754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.23  E-value=0.00027  Score=50.59  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ++++||.|||||||+..+++--
T Consensus        33 ~~iiGPNGaGKSTLlK~iLGll   54 (254)
T COG1121          33 TALIGPNGAGKSTLLKAILGLL   54 (254)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999843

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.23  E-value=0.00027  Score=50.81  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.6

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ++++||.|||||||++.+.+--
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhccC
Confidence            6899999999999999998743

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.23  E-value=0.00036  Score=47.59  Aligned_cols=27  Identities=19%  Similarity=0.158  Sum_probs=22.6

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .....-|++.|.+||||||+.+.+...
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            345678999999999999999887654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.23  E-value=0.00037  Score=49.21  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+...
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCcC
Confidence            478999999999999999998653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-97
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-97
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-97
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-97
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-96
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		7e-96
1s1c_A	183	Crystal Structure Of The Complex Between The Human		9e-96
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-95
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-95
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		6e-95
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-94
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-94
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-94
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-93
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-93
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		6e-93
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-92
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		6e-92
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		8e-90
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-76
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-60
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		7e-60
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-59
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-59
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-59
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-59
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-59
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-59
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-59
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-59
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-59
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		6e-59
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-59
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-59
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-58
1mh1_A	186	Small G-Protein Length = 186		1e-58
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-58
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-58
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-58
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-58
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		4e-58
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		4e-58
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-58
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-57
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-57
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-57
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-57
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-57
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-57
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-57
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-57
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-57
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-57
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-57
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-57
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-57
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-57
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		9e-57
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-56
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-56
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-56
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-56
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-56
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-56
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		4e-56
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		4e-56
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		6e-56
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		8e-56
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		9e-56
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-55
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-55
2kb0_A	178	Cdc42(T35a) Length = 178		1e-55
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-55
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-54
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-53
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-53
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-53
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		4e-49
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-48
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-48
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-48
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-46
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-45
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		4e-45
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-45
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-43
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-43
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		9e-21
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-20
2efc_B	181	Ara7-GdpATVPS9A Length = 181		6e-20
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		7e-20
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-19
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-19
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-19
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		4e-19
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-19
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		6e-19
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		7e-19
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		7e-19
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		8e-19
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		8e-19
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		9e-19
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		9e-19
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-18
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-18
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-18
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-18
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-18
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-18
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-18
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-18
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-18
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-18
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-18
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-18
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-18
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-18
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-18
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-18
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-18
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-18
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		4e-18
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-18
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		7e-18
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-17
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-17
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-17
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-17
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-17
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-17
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-17
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-17
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-17
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-17
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-17
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-17
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-17
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-17
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-17
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-17
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-17
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-17
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		6e-17
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-17
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		6e-17
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		6e-17
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		6e-17
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-17
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-17
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		7e-17
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		8e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		8e-17
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		9e-17
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-16
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-16
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-16
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-16
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-16
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-16
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-16
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-16
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-16
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-16
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-16
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-16
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-16
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-16
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-16
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-16
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		5e-16
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		5e-16
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		5e-16
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-16
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		5e-16
1vg1_A	185	Gdp-bound Rab7 Length = 185		5e-16
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-16
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		7e-16
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-15
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-15
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-15
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-15
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-15
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-15
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-15
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		5e-15
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		6e-15
2bku_A	177	Kap95p:rangtp Complex Length = 177		8e-15
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		9e-15
1byu_A	216	Canine Gdp-Ran Length = 216		1e-14
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-14
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-14
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-14
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-14
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-14
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		5e-14
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-14
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		8e-14
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		9e-14
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		9e-14
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-13
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-13
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-13
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-13
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-13
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-13
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-13
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-13
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-13
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-13
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-13
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-13
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-13
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-13
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		4e-13
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		5e-13
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-13
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-13
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		6e-13
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		6e-13
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-13
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-13
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		6e-13
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		7e-13
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		8e-13
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		8e-13
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		8e-13
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-12
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-12
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-12
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-12
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-12
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-12
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-12
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-12
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-12
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-12
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-12
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-12
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-12
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-12
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-12
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-12
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-12
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-12
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		3e-12
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-12
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-12
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		3e-12
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-12
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-12
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-12
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-12
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-12
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-12
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		6e-12
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		7e-12
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-12
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		8e-12
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-12
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-11
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-11
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-11
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-11
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		4e-11
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		5e-11
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		6e-11
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-10
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-10
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-10
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		5e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		8e-10
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		9e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-09
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-09
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-09
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-09
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-08
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-08
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-08
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		8e-08
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-06
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		7e-06
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-05
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-05
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-05
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		5e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		9e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		4e-04
2lkc_A	178	Free B.St If2-G2 Length = 178		5e-04
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		6e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		8e-04

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  350 bits (899), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 181 ARRGKKKSGCLIL 193

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  350 bits (899), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 3   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 62
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 183 ARRGKKKSGCLVL 195

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  350 bits (898), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 4   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 63
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 64  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 184 ARRGKKKSGCLVL 196

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  350 bits (898), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 167/186 (89%), Positives = 175/186 (94%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 3   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 62
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 181 VKKKKK 186
            ++ KK
Sbjct: 183 ARRGKK 188

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  347 bits (889), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 169/193 (87%), Positives = 178/193 (92%), Gaps = 1/193 (0%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 181 VKK-KKKGRCRLL 192
            ++ KKK  C +L
Sbjct: 181 ARRGKKKSGCLVL 193

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  345 bits (886), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 166/186 (89%), Positives = 174/186 (93%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 181 VKKKKK 186
            ++ KK
Sbjct: 181 ARRGKK 186

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  345 bits (885), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 165/180 (91%), Positives = 171/180 (95%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 3   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 62
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  344 bits (883), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 165/180 (91%), Positives = 171/180 (95%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 2   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 61
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  343 bits (881), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 165/188 (87%), Positives = 174/188 (92%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LR D +T +EL KMKQEPV+ EEGR MA +I+AF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
Query: 181 VKKKKKGR 188
           V+K K+ R
Sbjct: 181 VRKNKRRR 188

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  342 bits (878), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 164/179 (91%), Positives = 170/179 (94%)
Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
           AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDTA
Sbjct: 6   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTA 65
Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL
Sbjct: 66  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 125
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           RND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  342 bits (876), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 163/181 (90%), Positives = 170/181 (93%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 21  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 80
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 140
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LR D +T +EL KMKQEPV+ EEGR MA +I+AF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
Query: 181 V 181
           V
Sbjct: 201 V 201

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  341 bits (875), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 164/180 (91%), Positives = 170/180 (94%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGD ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 2   MAAIRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 61
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  341 bits (874), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/180 (91%), Positives = 170/180 (94%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  338 bits (867), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 162/181 (89%), Positives = 169/181 (93%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 21  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 80
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF PNVPIILVGNKKD
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKD 140
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LR D +T +EL KMKQEPV+ EEGR MA +I+AF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
Query: 181 V 181
           V
Sbjct: 201 V 201

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  337 bits (863), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 162/178 (91%), Positives = 168/178 (94%)
Query: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
           AIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDTAG
Sbjct: 1   AIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 60
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 120
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           ND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  335 bits (860), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 161/180 (89%), Positives = 167/180 (92%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGD ACGKTCLLIVFSKDQFP VYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1   MAAIRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDR RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61  AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LRND +T +EL KMKQEPVKP EGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  334 bits (857), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/177 (90%), Positives = 167/177 (94%)
Query: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
           AIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDTAG
Sbjct: 1   AIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 60
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 120
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           ND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAAL
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  332 bits (852), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 160/179 (89%), Positives = 167/179 (93%)
Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
           + IRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDTA
Sbjct: 5   SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTA 64
Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           G EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL
Sbjct: 65  GLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 124
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           RND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  325 bits (834), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 153/179 (85%), Positives = 166/179 (92%)
Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
           + IRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVD KQVELALWDTA
Sbjct: 22  SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81
Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           GQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKDL
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           R+D +   EL +MKQEPV+ ++GRAMA +I A+ YLECSAK+KEGVREVFETATRAALQ
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  280 bits (715), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 152/181 (83%)
Query: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
           +IR+KLVIVGDGACGKTCLLIV SK QFPEVYVPTVFENYVAD+EVD ++VELALWDTAG
Sbjct: 8   SIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAG 67
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QEDYDRLRPLSYPD++V+L+CFSID PDSLEN+ EKW  EV HFC  VPIILVG K DLR
Sbjct: 68  QEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLR 127
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
           NDP TI++L +  Q+PV  +EG+++A +I A  Y ECSAK+  GVREVFE ATRA+L  K
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASLMGK 187
Query: 183 K 183
Sbjct: 188 S 188

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  227 bits (579), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 143/195 (73%), Gaps = 6/195 (3%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL- 179
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L 
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
Query: 180 --QVKKKKKGRCRLL 192
              VKK+K+ +C LL
Sbjct: 179 PPPVKKRKR-KCLLL 192

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  226 bits (576), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 111/189 (58%), Positives = 140/189 (74%), Gaps = 4/189 (2%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 65  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL---QVKK 183
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L    VKK
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
Query: 184 KKKGRCRLL 192
           +K+ +C LL
Sbjct: 185 RKR-KCLLL 192

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  225 bits (573), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 143/194 (73%), Gaps = 4/194 (2%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VDSK V L LWDT
Sbjct: 1   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDT 58
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CP+ PIILVG K D
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL- 179
           LR+D +TI++L + K  P+   +G A+A++I++  YLECSA ++ G++ VF+ A RA L 
Sbjct: 119 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLC 178
Query: 180 -QVKKKKKGRCRLL 192
            Q  +++K  C LL
Sbjct: 179 PQPTRQQKRACSLL 192

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  225 bits (573), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 20  MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 77
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 78  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 137
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 138 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  225 bits (573), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 142/195 (72%), Gaps = 6/195 (3%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AG EDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 59  AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL- 179
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L 
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
Query: 180 --QVKKKKKGRCRLL 192
              VKK+K+ +C LL
Sbjct: 179 PPPVKKRKR-KCLLL 192

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/180 (59%), Positives = 134/180 (74%), Gaps = 2/180 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L+
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/180 (59%), Positives = 133/180 (73%), Gaps = 2/180 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L 
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLS 178

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 130/173 (75%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 91
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 92  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 139/189 (73%), Gaps = 4/189 (2%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL---QVKK 183
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L    VKK
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
Query: 184 KKKGRCRLL 192
           +K+ +C LL
Sbjct: 185 RKR-KCLLL 192

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  223 bits (569), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  223 bits (568), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 5   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 62
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 63  AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 122
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 123 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 59  AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/179 (59%), Positives = 132/179 (73%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GK CLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 8   MQAI--KCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/173 (59%), Positives = 129/173 (74%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ +  P  Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 91
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 92  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 130/173 (75%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 67  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 127 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/171 (60%), Positives = 129/171 (75%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 65  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 175

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/173 (59%), Positives = 129/173 (74%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + F   Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 74
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 75  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 134
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 135 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/173 (59%), Positives = 129/173 (74%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 91
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 92  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/179 (59%), Positives = 132/179 (73%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 4   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 61
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AG EDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K D
Sbjct: 62  AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 121
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 122 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/179 (58%), Positives = 131/179 (73%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 2   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 59
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CP+ PI+LVG K D
Sbjct: 60  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI+ L   K  P+   +G AMA++I +  YLECSA ++ G++ VF+ A RA L
Sbjct: 120 LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/179 (58%), Positives = 131/179 (73%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CP+ PI+LVG K D
Sbjct: 59  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI+ L   K  P+   +G AMA++I +  YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  220 bits (560), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/179 (58%), Positives = 131/179 (73%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 2   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 59
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CP+ PI+LVG K D
Sbjct: 60  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI+ L   K  P+   +G AMA++I +  YLECSA ++ G++ VF+ A RA L
Sbjct: 120 LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 128/173 (73%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S  ++  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 276
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 1/187 (0%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 65
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 66  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 125
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 126 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 185
Query: 187 G-RCRLL 192
             RC LL
Sbjct: 186 SRRCVLL 192

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 128/173 (73%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S  ++  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 276
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 1/187 (0%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 67
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 68  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 127
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 128 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 187
Query: 187 G-RCRLL 192
             RC LL
Sbjct: 188 SRRCVLL 194

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 1/187 (0%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 G-RCRLL 192
             RC LL
Sbjct: 185 SRRCVLL 191

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  218 bits (555), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 128/173 (73%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S  ++  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 276
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  217 bits (553), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 12  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 71
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 72  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 131
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 132 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 191
Query: 187 GR 188
            R
Sbjct: 192 SR 193

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/179 (58%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGD A GKTCLLI ++ + FP  Y+PTVF+NY A++ VDSK V L LWDT
Sbjct: 8   MQAI--KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDT 65
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CP+ PIILVG K D
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           LR+D +TI++L + K  P+   +G A+A++I++  YLECSA ++ G++ VF+ A RA L
Sbjct: 126 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 GR 188
            R
Sbjct: 185 SR 186

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 GR 188
            R
Sbjct: 185 SR 186

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 67
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 68  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 127
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 128 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 187
Query: 187 GR 188
            R
Sbjct: 188 SR 189

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 66
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 67  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 126
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 127 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 186
Query: 187 GR 188
            R
Sbjct: 187 SR 188

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  217 bits (552), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 GR 188
            R
Sbjct: 185 SR 186

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  216 bits (551), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 131/173 (75%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGD A GKTCLLI ++ + FP  Y+PTVF+NY A++ VDSK V L LWDTAGQEDY
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 70
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CP+ PIILVG K DLR+D +
Sbjct: 71  DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKD 130
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G A+A++I++  YLECSA ++ G++ VF+ A RA L
Sbjct: 131 TIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  215 bits (548), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 100/187 (53%), Positives = 134/187 (71%), Gaps = 1/187 (0%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAG EDY
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDY 68
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 69  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 128
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 129 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 188
Query: 187 G-RCRLL 192
             RC LL
Sbjct: 189 SRRCVLL 195

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 131/182 (71%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GK CLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 71
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 72  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 131
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 132 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 191
Query: 187 GR 188
            R
Sbjct: 192 SR 193

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  214 bits (546), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/187 (53%), Positives = 134/187 (71%), Gaps = 1/187 (0%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGD A GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 G-RCRLL 192
             RC LL
Sbjct: 185 SRRCVLL 191

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 66
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 67  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 126
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+
Sbjct: 127 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 68
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 69  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 128
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+
Sbjct: 129 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  213 bits (543), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 127/174 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA ++ G++ VF+ A  AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  213 bits (543), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 74
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 75  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 134
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+
Sbjct: 135 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 188

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  213 bits (542), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 95/173 (54%), Positives = 126/173 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA ++ G++ VF+ A  AAL
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  212 bits (540), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 132/178 (74%)
Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
            A+  K V+VGDGA GKTCLL+ ++ D FPE YVPTVF++Y   + V  KQ  L L+DTA
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74
Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           GQEDYDRLRPLSYP TDV L+CFS+ +P S +N+ E+W PE+K + PNVP +L+G + DL
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           R+DP T+  LN MK++P+  E+G+ +A++I A  Y+ECSA +++G++ VF+ A  A L
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  212 bits (540), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 107/198 (54%), Positives = 133/198 (67%), Gaps = 21/198 (10%)
Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           M AI  K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 3   MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Query: 61  AGQEDYDRLRPLSYPDT-------------------DVILMCFSIDSPDSLENIPEKWTP 101
           AGQEDYDRLRPLSYP T                   DV L+CFS+ SP S EN+  KW P
Sbjct: 61  AGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYP 120
Query: 102 EVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161
           EV+H CPN PIILVG K DLR+D +TI++L + K  P+   +G AMA++I A  YLECSA
Sbjct: 121 EVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 180
Query: 162 KSKEGVREVFETATRAAL 179
            ++ G++ VF+ A RA L
Sbjct: 181 LTQRGLKTVFDEAIRAVL 198

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  212 bits (540), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 127/174 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 130/180 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAG EDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 127/174 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVP VF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  211 bits (538), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 127/174 (72%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++ P  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 122/179 (68%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V+VGDG CGKT LL+VF+   FPE Y PTVFE Y+ +++V  K V L +WDTAGQ+DY
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPL YPD  V+L+CF + SP+S +NI  +W PEV HFC  VPII+VG K DLR D +
Sbjct: 96  DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
            + +L +   EPV    G+ MA+ + A AYLECSA+  + V  VF+ A   AL  + + 
Sbjct: 156 LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRGRN 214

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 131/177 (74%), Gaps = 1/177 (0%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
           ++ K+V+VGD  CGKT LL VF+KD FPE YVPTVFENY A  E+D++++EL+LWDT+G 
Sbjct: 22  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 81
Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
             YD +RPLSYPD+D +L+CF I  P++L+++ +KW  E++ FCPN  ++LVG K DLR 
Sbjct: 82  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 141
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
           D +T+ EL+  +Q PV  ++G  MA++I A  Y+ECSA +S+  VR++F  AT A +
Sbjct: 142 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 198

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 131/178 (73%), Gaps = 1/178 (0%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
           ++ K+V+VGD  CGKT LL VF+KD FPE YVPTVFENY A  E+D++++EL+LWDT+G 
Sbjct: 6   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65
Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
             YD +RPLSYPD+D +L+CF I  P++L+++ +KW  E++ FCPN  ++LVG K DLR 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAALQ 180
           D +T+ EL+  +Q PV  ++G  MA++I A  Y+ECSA +S+  VR++F  AT A + 
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 131/178 (73%), Gaps = 1/178 (0%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
           ++ K+V+VGD  CGKT LL VF+KD FPE YVPTVFENY A  E+D++++EL+LWDT+G 
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86
Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
             YD +RPLSYPD+D +L+CF I  P++L+++ +KW  E++ FCPN  ++LVG K DLR 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAALQ 180
           D +T+ EL+  +Q PV  ++G  MA++I A  Y+ECSA +S+  VR++F  AT A + 
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VD   V L LWDTAGQEDY
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE+KH+ P +PI+LVG K DLR+D  
Sbjct: 68  NRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQ 127
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
            +K+        +   +G  + + I A  YLECS+K+++ V+ VF+TA R AL+
Sbjct: 128 FLKD--HPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALR 179

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 125/180 (69%), Gaps = 4/180 (2%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VD + V L LWDTAGQEDY
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY 70
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
            RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K DLR+D  
Sbjct: 71  SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
            + +   +    +   +G  + ++I A AY+ECS+K+++ V+ VF+TA +  LQ  ++K+
Sbjct: 131 YLADHTNV----ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 3/181 (1%)
Query: 1   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
           M+A R  K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+   V L LWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPI+LVG K 
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           DLR+D      ++     P+   +G  + + I A AY+ECS+KS+E V+ VF+ A R  L
Sbjct: 123 DLRDDKQFF--IDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 180 Q 180
           Q
Sbjct: 181 Q 181

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  187 bits (474), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 126/180 (70%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKT L++ ++ + +P  Y+PT F+N+ A + VD + V L L DTAGQ+++
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           D+LRPL Y +TD+ L+CFS+ SP S +N+ EKW PE++  CP  PIILVG + DLR D  
Sbjct: 82  DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
            + EL+K K++PV  E  + +A++I A +Y+ECSA +++ ++EVF+ A  A +Q    ++
Sbjct: 142 VLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQ 201

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 121/181 (66%), Gaps = 3/181 (1%)
Query: 1   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VD   V L LWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           DLR+D      ++     P+   +G  + + I +  Y+ECS+K+++ V+ VF+ A +  L
Sbjct: 121 DLRDDKQFF--IDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
Query: 180 Q 180
           Q
Sbjct: 179 Q 179

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  177 bits (449), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           R KLV+VGD  CGKT +L V +KD +PE YVPTVFENY A +E + ++VEL+LWDT+G  
Sbjct: 11  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 70
Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
            YD +RPL Y D+D +L+CF I  P+++++  +KW  E+  +CP+  ++L+G K DLR D
Sbjct: 71  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 130
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
            +T+ EL+  KQ P+  E+G A+A+++ A  YLE SA  S++ +  +F TA+   L
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           R KLV+VGD  CGKT +L V +KD +PE YVPTVFENY A +E + ++VEL+LWDT+G  
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86
Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
            YD +RPL Y D+D +L+CF I  P+++++  +KW  E+  +CP+  ++L+G K DLR D
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
            +T+ EL+  KQ P+  E+G A+A+++ A  YLE SA  S++ +  +F TA+   L
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           R KLV+VGD  CGKT +L V +KD +PE YVPTVFENY A +E + ++VEL+LWDT+G  
Sbjct: 10  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 69
Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
            YD +RPL Y D+D +L+CF I  P+++++  +KW  E+  +CP+  ++L+G K DLR D
Sbjct: 70  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 129
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
            +T+ EL+  KQ P+  E+G A+A+++ A  YLE SA  S++ +  +F TA+   L
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 112/166 (67%), Gaps = 10/166 (6%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V+VGDGA GKTCLL+ FSK + P  YVPTVFEN+   ++  +++  L LWDTAGQE+Y
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 83
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSY D+DV+L+CF++++  S +NI  KW PE+KH+      +LVG K DLR D +
Sbjct: 84  DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS 143
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                     + V  +EG  + QK+   AY+E S+ +K G+ EVFE
Sbjct: 144 ----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE 179

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 112/166 (67%), Gaps = 10/166 (6%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V+VGDGA GKTCLL+ FSK + P  YVPTVFEN+   ++  +++  L LWDTAGQE+Y
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSY D+DV+L+CF++++  S +NI  KW PE+KH+      +LVG K DLR D +
Sbjct: 85  DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS 144
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                     + V  +EG  + QK+   AY+E S+ +K G+ EVFE
Sbjct: 145 ----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE 180

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 19/180 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + + Y+ T+  ++ +  I +++K V+L +WDTAGQE 
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           +  +    Y     I++ + +   DS +N+ + W  E+  +   NV  +LVGNK DL   
Sbjct: 71  FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAMENVNKLLVGNKCDL--- 126
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                    + +  V  +EGR +A   +   ++E SAK+   V + F T    A ++KK+
Sbjct: 127 ---------VSKRVVTSDEGRELADS-HGIKFIETSAKNAYNVEQAFHT---MAGEIKKR 173

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 15/178 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+I+GD   GK+ LL+ F+ + F   Y+ T+  ++ +  +E++ ++V+L +WDTAGQE 
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y  T  +++ + + S +S  N+ ++W  E+   C +V  ILVGNK D   DP
Sbjct: 71  FRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKND---DP 126
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                    +++ V+ E+    A ++      E SAK    V E+F   T   L+ KK
Sbjct: 127 ---------ERKVVETEDAYKFAGQM-GIQLFETSAKENVNVEEMFNCITELVLRAKK 174

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTA 61
           +I  KLV++GD   GK+ L++ F KDQF E    T+   + +  + V+   V+  +WDTA
Sbjct: 10  SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 69
Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKD 120
           GQE Y  L P+ Y      ++ F + +  S E   +KW  E++    PN+ + L GNK D
Sbjct: 70  GQERYHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQGNPNMVMALAGNKSD 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
           L            +    V  E+ +  AQ+ N   ++E SAK+   V+E+F
Sbjct: 129 L------------LDARKVTAEDAQTYAQE-NGLFFMETSAKTATNVKEIF 166

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  I +D KQ++L +WDTAGQE 
Sbjct: 12  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y      L+ + I   D+  ++        +H   N+ I+L+GNK DL +  
Sbjct: 72  FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLES-- 129
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                     +  VK EEG A A++ +   ++E SAK+   V E F
Sbjct: 130 ----------RREVKKEEGEAFARE-HGLIFMETSAKTASNVEEAF 164

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L + F +  F E Y PT+ ++Y   +EVD++Q  L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R L   +     + +SI +  +  ++ +  +    VK    +VP+ILVGNK DL + 
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLED- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                      +  V  E+G+ +A++ N  A+LE SAKSK  V E+F    R
Sbjct: 123 -----------ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVR 163

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ + W  E+  +   NV  +LVGNK DL   
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 130 KVVDNTTAKEFADSLGIP-----------------FLETSAKNATNVEQAFMT---MAAE 169
Query: 181 VKKK 184
           +KK+
Sbjct: 170 IKKR 173

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ + W  E+  +   NV  +LVGNK DL   
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 130 KVVDNTTAKEFADSLGIP-----------------FLETSAKNATNVEQAFMT---MAAE 169
Query: 181 VKKK 184
           +KK+
Sbjct: 170 IKKR 173

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSKQVELALWDTAGQED 65
           K++++GDG  GK+ L+  +  ++F      T+   ++  D+EVD   V + +WDTAGQE 
Sbjct: 13  KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKD 120
           +  LR   Y  +D  L+ FS+D   S +N+   W  E  ++       + P +++GNK D
Sbjct: 73  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           +             K+  V  EE +A  +    + Y E SAK    V   FE A R  L
Sbjct: 132 I-------------KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++++GD   GK+CLL+ F +D+F   ++ T+  ++ +  ++++ K+V+L LWDTAGQE 
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y     I++ + +    +  NI + +    +H      ++LVGNK D     
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 136
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                   M+   V  ++G A+A+++    ++E SAK+ + V E+F T  +
Sbjct: 137 --------METRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 178

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 93/167 (55%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K+V++G+G  GKT L++ + +++F + ++ T+  +++   + +  K+V LA+WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
           +  L P+ Y D++  ++ + I   DS + + + W  E++    N + + +VGNK DL   
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE-- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                     K+  V  +E  + A+ + A  Y   SAK  +G+ E+F
Sbjct: 125 ----------KERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 16/168 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y R+    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                         V  +E RA A+K N  +++E SA     V E F+
Sbjct: 125 -----------LRAVPTDEARAFAEK-NNLSFIETSALDSTNVEEAFK 160

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ + W  E+  +   NV  +LVGNK DL   
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 120 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 159
Query: 181 VKKK 184
           +KK+
Sbjct: 160 IKKR 163

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 93/167 (55%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K+V++G+G  GKT L++ + +++F + ++ T+  +++   + +  K+V LA+WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
           +  L P+ Y D++  ++ + I   DS + + + W  E++    N + + +VGNK DL   
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE-- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                     K+  V  +E  + A+ + A  Y   SAK  +G+ E+F
Sbjct: 125 ----------KERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 93/167 (55%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K+V++G+G  GKT L++ + +++F + ++ T+  +++   + +  K+V LA+WDTAGQE 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
           +  L P+ Y D++  ++ + I   DS + + + W  E++    N + + +VGNK DL   
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE-- 138
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                     K+  V  +E  + A+ + A  Y   SAK  +G+ E+F
Sbjct: 139 ----------KERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++++GD   GK+CLL+ F +D+F   ++ T+  ++ +  ++++ K+V+L LWDTAGQE 
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y     I++ + +    +  NI + +    +H      ++LVGNK D     
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 123
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                   M+   V  ++G A+A+++    ++E SAK+ + V E+F T  +
Sbjct: 124 --------METRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 165

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K +I+GD   GK+CLL+ F+  +F  V+  T+   + A  + +D KQ++L +WDTAGQE 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL +  
Sbjct: 83  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-- 140
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                     +  VK EEG A A++ +   ++E SAK+   V E F
Sbjct: 141 ----------RRDVKREEGEAFARE-HGLIFMETSAKTACNVEEAF 175

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL   
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 154 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFXT---XAAE 193
Query: 181 VKKK 184
           +KK+
Sbjct: 194 IKKR 197

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL   
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 137 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 176
Query: 181 VKKK 184
           +KK+
Sbjct: 177 IKKR 180

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ + W  E+  +   NV  +LVGNK DL   
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 127 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 166
Query: 181 VKKK 184
           +KK+
Sbjct: 167 IKKR 170

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++++GD   GK+CLL+ F +D+F   ++ T+  ++ +  ++++ K+V+L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y     I++ + I    +  NI + +    +H      ++LVGNK D     
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 119
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                   M+   V  ++G A+A+++    ++E SAK+ + V E+F T  +
Sbjct: 120 --------METRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL   
Sbjct: 87  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 146 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 185
Query: 181 VKKK 184
           +KK+
Sbjct: 186 IKKR 189

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ + W  E+  +   NV  +LVGNK DL   
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 127 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 166
Query: 181 VKKK 184
           +KK+
Sbjct: 167 IKKR 170

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 22  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 82  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 139
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                         V  +E RA A+K N  +++E SA     V   F+T
Sbjct: 140 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 176

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K++++GDG  GK+ L+  +  ++F      T+   ++  D+EVD + V L +WDTAGQE 
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKD 120
           +  LR   Y   D  L+ FS+D   S EN+   W  E  ++       + P +++GNK D
Sbjct: 69  FKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                         +   V  EE +    +   + YLE SAK    V   FE A R  L 
Sbjct: 128 -------------KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLA 174
Query: 181 VKKK 184
           V+++
Sbjct: 175 VEEQ 178

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 148
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                         V  +E RA A+K N  +++E SA     V   F+T
Sbjct: 149 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 185

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 18  KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL   
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 137 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 176
Query: 181 VKKK 184
           +KK+
Sbjct: 177 IKKR 180

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 15/172 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G    GK+ L + F +  F E Y PT+ ++Y   +EVD++Q  L + DTAG E +
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 66
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R L   +     + +SI +  +  ++ +  +    VK    +VP+ILVGNK DL + 
Sbjct: 67  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLED- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                      +  V  E+G+ +A++ N  A+LE SAKSK  V E+F    R
Sbjct: 125 -----------ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVR 165

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSKQVELALWDTAGQED 65
           K++++GDG  GK+ L+  +  ++F      T+   ++  D+EVD   V + +WDTAGQE 
Sbjct: 11  KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 70
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKD 120
           +  LR   Y  +D  L+ FS+D   S +N+   W  E  ++       + P +++GNK D
Sbjct: 71  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKID 129
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           +              +  V  EE +A  +    + Y E SAK    V   FE A R  L
Sbjct: 130 I-------------SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 16/172 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GKTC+L  FS+D F   ++ T+  ++ +  IE+D K+++L +WDTAGQE 
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           +  +    Y     I++ + I +  S +NI   W   + +H   +V  +++GNK D+ ND
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDV-ND 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
               ++++K + E +  + G           ++E SAK+   V   F T  R
Sbjct: 128 K---RQVSKERGEKLALDYG---------IKFMETSAKANINVENAFFTLAR 167

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSKQVELALWDTAGQED 65
           K++++GDG  GK+ L+  +  ++F      T+   ++  D+EVD   V + +WDTAGQE 
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKD 120
           +  LR   Y  +D  L+ FS+D   S +N+   W  E  ++       + P +++GNK D
Sbjct: 69  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           +              +  V  EE +A  +    + Y E SAK    V   FE A R  L
Sbjct: 128 I-------------SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 16/172 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GKTC+L  FS+D F   ++ T+  ++ +  IE+D K+++L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           +  +    Y     I++ + I +  S +NI   W   + +H   +V  +++GNK D+ ND
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDV-ND 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
               ++++K + E +  + G           ++E SAK+   V   F T  R
Sbjct: 126 K---RQVSKERGEKLALDYG---------IKFMETSAKANINVENAFFTLAR 165

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 15/171 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++++GD   GK+CLL+ F +D+F   ++ T+  ++ +  ++++ K+V+L LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y     I++ + +    +  NI + +    +H      ++LVGNK D     
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 119
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                    +   V  ++G A+A+++    ++E SAK+ + V E+F T  +
Sbjct: 120 --------XETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 15/171 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++++GD   GK+CLL+ F +D+F   ++ T+  ++ +  ++++ K+V+L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y     I++ + I    +  NI + +    +H      ++LVGNK D     
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 119
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                    +   V  ++G A+A+++    ++E SAK+ + V E+F T  +
Sbjct: 120 --------XETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L + F +  F E Y PT+ ++Y   +EVD +Q  L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R L   +     + +SI +  +  ++ +  +    VK    +VP+ILVGNK DL + 
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                      +  V  E+G+ +A++    A+LE SAKSK  V E+F    R
Sbjct: 123 -----------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 5   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + D+     + W  E+ +   PN+ I L GNK DL + 
Sbjct: 65  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V+ +E +A A   N+  ++E SAK+   V E+F
Sbjct: 123 -----------KRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 157

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + D+     + W  E+ +   PN+ I L GNK DL + 
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V+ +E +A A   N+  ++E SAK+   V E+F
Sbjct: 125 -----------KRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 159

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+I+G+ + GKT  L  ++ D F   +V TV  ++ V  +    K+V+L +WDTAGQE 
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           Y  +    Y      ++ + I + +S  N  + W  ++K +   N  +ILVGNK D    
Sbjct: 85  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCD---- 139
Query: 125 PNTIKELNKMKQEPVKP-EEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                    M++E V P E+G+ +A+++  F + E SAK    VR+ FE
Sbjct: 140 ---------MEEERVVPTEKGQLLAEQL-GFDFFEASAKENISVRQAFE 178

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 9   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + +S     + W  E+ +   PN+ I L GNK DL N 
Sbjct: 69  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 126
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  +E ++ A   N+  ++E SAK+   V E+F
Sbjct: 127 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 161

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L + F +  F + Y PT+ ++Y   +EVD +Q  L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R L   +     + +SI +  +  ++ +  +    VK    +VP+ILVGNK DL + 
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                      +  V  E+G+ +A++    A+LE SAKSK  V E+F    R
Sbjct: 123 -----------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + +S     + W  E+ +   PN+ I L GNK DL N 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  +E ++ A   N+  ++E SAK+   V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++I+G+ + GKT  L  ++ D F   +V TV  ++ V  I  + K+++L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           Y  +    Y      ++ + I + +S  N  + W+ ++K +   N  ++LVGNK D+ + 
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                      +  V  E GR +A  +  F + E SAK    V++ FE
Sbjct: 125 -----------ERVVSSERGRQLADHL-GFEFFEASAKDNINVKQTFE 160

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAG E 
Sbjct: 10  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 70  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                         V  +E RA A+K N  +++E SA     V   F+T
Sbjct: 128 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 164

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 148
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                         V  +E RA A+K N  +++E SA     V   F+T
Sbjct: 149 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 185

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE 
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG K DL   
Sbjct: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              D  T KE       P                 +LE SAK+   V + F T    A +
Sbjct: 129 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 168
Query: 181 VKKK 184
           +KK+
Sbjct: 169 IKKR 172

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAG E 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I LVGNK DLR+ 
Sbjct: 67  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLRH- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                         V  +E RA A+K N  +++E SA     V   F+T
Sbjct: 125 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 161

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAG E 
Sbjct: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I LVGNK DLR+ 
Sbjct: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLRH- 130
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                         V  +E RA A+K N  +++E SA     V   F+T
Sbjct: 131 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 167

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++G+ + GKT  L  ++ D F   +V TV  ++ V  +    K+++L +WDTAGQE 
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I + +S   + + W  ++K +   N  +ILVGNK DL + 
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLED- 141
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                      +  V  E+GR +A  +  F + E SAK    V++VFE
Sbjct: 142 -----------ERVVPAEDGRRLADDL-GFEFFEASAKENINVKQVFE 177

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R   +   +  L  FSI   +S     +  +    VK    NVP +LVGNK DL + 
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 137
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  EE +  A++ N   Y+E SAK++  V +VF
Sbjct: 138 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAGQEDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R   +   +  L  FSI   +S     +  +    VK    NVP +LVGNK DL + 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  EE +  A++ N   Y+E SAK++  V +VF
Sbjct: 126 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVF 160

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R   +   +  L+ FSI   +S     E  +    VK     +P+++VGNK D    
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSD---- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                 L + +Q PV  EE R+ A++     Y+E SAK++  V +VF
Sbjct: 125 ------LEERRQVPV--EEARSKAEEWGV-QYVETSAKTRANVDKVF 162

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R   +   +  L  FSI   +S     +  +    VK    NVP +LVGNK DL + 
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 133
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  EE +  A++ N   Y+E SAK++  V +VF
Sbjct: 134 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVF 168

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R   +   +  L+ FSI   +S     E  +    VK     +P+++VGNK D    
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSD---- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                 L + +Q PV  EE R+ A++     Y+E SAK++  V +VF
Sbjct: 121 ------LEERRQVPV--EEARSKAEEWGV-QYVETSAKTRANVDKVF 158

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           KLV +G+ + GKT L+  F  D F   Y  T+  ++++  + ++ + V L LWDTAGQE 
Sbjct: 16  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  L P    D+ V ++ + I + +S      KW  +V+     +V I+LVGNK DL + 
Sbjct: 76  FRSLIPSYIRDSTVAVVVYDITNTNSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSD- 133
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  EEG   A+++N   ++E SAK+   V+++F
Sbjct: 134 -----------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 168

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + D+     + W  E+ +   PN+ I L GNK DL + 
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V+ +E +A A   N+  ++E SAK+   V E+F
Sbjct: 125 -----------KRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 159

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R   +   +  L  FSI   +S     +  +    VK    NVP +LVGNK DL + 
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 123
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                     +Q  V+  + RA    +N   Y+E SAK++  V +VF
Sbjct: 124 ---------KRQVSVEEAKNRADQWNVN---YVETSAKTRANVDKVF 158

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+   GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 8   KLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + +S     + W  E+ +   PN+ I L GNK DL N 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  +E ++ A   N+  ++E SAK+   V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+   GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 8   KLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + +S     + W  E+ +   PN+ I L GNK DL N 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  +E ++ A   N+  ++E SAK+   V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+   GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 8   KLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + +S     + W  E+ +   PN+ I L GNK DL N 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  +E ++ A   N+  ++E SAK+   V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+   GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 8   KLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + +S     + W  E+ +   PN+ I L GNK DL N 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  +E ++ A   N+  ++E SAK+   V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           KLV +G+ + GKT L+  F  D F   Y  T+  ++++  + ++ + V L LWDTAGQE 
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  L P    D+ V ++ + I + +S +    KW  +V+     +V I+LVGNK DL + 
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLAD- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  EEG   A+++N   ++E SAK+   V+++F
Sbjct: 121 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLF 155

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 21/170 (12%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV---FENYVADIEVDSKQVELALWDTAG 62
           K+++VGD   GKTCLL+ F    F    ++ TV   F N V D  VD  +V+L +WDTAG
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD--VDGVKVKLQMWDTAG 69
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDL 121
           QE +  +    Y D   +L+ + + +  S +NI + W  E+  +  + V ++L+GNK D 
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVD- 127
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                         +  VK E+G  +A++     ++E SAK+   V   F
Sbjct: 128 -----------SAHERVVKREDGEKLAKEY-GLPFMETSAKTGLNVDLAF 165

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           KLV +G+ + GKT L+  F  D F   Y  T+  ++++  + ++ + V L LWDTAGQE 
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  L P    D+ V ++ + I + +S +    KW  +V+     +V I+LVGNK DL + 
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQ-TSKWIDDVRTERGSDVIIMLVGNKTDLAD- 121
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                      +  +  EEG   A++++   ++E SAK+   V+++F     A L+
Sbjct: 122 -----------KRQITIEEGEQRAKELSVM-FIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 9   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P  Y      ++ + I + +S     + W  E+ +   PN+ I L GNK DL N 
Sbjct: 69  YHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 126
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  +E ++ A   N+  + E SAK+   V E+F
Sbjct: 127 -----------KRAVDFQEAQSYADD-NSLLFXETSAKTSXNVNEIF 161

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 10  KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + ++     + W  E+ +   P++ I L GNK DL N 
Sbjct: 70  YHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLAN- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V+ EE +A A   N+  ++E SAK+   V ++F
Sbjct: 128 -----------KRMVEYEEAQAYADD-NSLLFMETSAKTAMNVNDLF 162

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 8   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDY 66
           L+++GD   GK+CLL+ F+ D + E Y+ T+  ++ +  IE+D K ++L +WDTAGQE +
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 121
             +    Y     I++ + +   +S  N+ + W  E+  +   NV  +LVGNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+   GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAGQE 
Sbjct: 8   KLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + +S     + W  E+ +   PN+ I L GNK DL N 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  +E ++ A   N+  ++E SAK+   V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ L++ F K QF E    T+   ++   + +D   V+  +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  L P+ Y      ++ + I + +S     + W  E+ +   PN+ I L GNK DL N 
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  +E ++ A   N+  ++E SAK+   V E+F
Sbjct: 125 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 159

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           K++I+G+   GK+ LL+ F+ D F PE+      +  V  I VD  + +LA+WDTAGQE 
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
           +  L P  Y     +++ + +   D+   + + W  E++ +C    I+  LVGNK D  N
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
                          V   EG   A+K ++  ++E SAK+ +GV+  FE      +Q 
Sbjct: 136 -------------REVDRNEGLKFARK-HSXLFIEASAKTCDGVQCAFEELVEKIIQT 179

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K+V++G+   GKTCL+  F++  FP     T+  ++ +  +E++ ++V+L +WDTAGQE 
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
           +  +    Y   + +++ + I   +S   +PE W  E++ +  N V  +LVGNK DL   
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAER 146
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
               +E+++ + E          AQ +    YLE SAK  + V ++F
Sbjct: 147 ----REVSQQRAEEFSE------AQDM---YYLETSAKESDNVEKLF 180

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 16/168 (9%)
Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           +K+ I+G  + GK+ L I F + QF + Y PT+   +   I V+ ++  L L DTAGQ++
Sbjct: 2   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 61
Query: 66  YDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 123
           Y  + P +Y  D +  ++ +S+ S  S E I       +       +PI+LVGNKKDL  
Sbjct: 62  YS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH- 119
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                       +  +  EEG+A+A+  NA A+LE SAK  +   +VF
Sbjct: 120 -----------MERVISYEEGKALAESWNA-AFLESSAKENQTAVDVF 155

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++G+   GK+CLL+ FS D +   Y+ T+  ++ +  +E+D K V+L +WDTAGQE 
Sbjct: 23  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRND 124
           +  +    Y  +  I++ + +   +S   + + W  E+  +  +  + +LVGNK DL++ 
Sbjct: 83  FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD- 140
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                   ++ +  V  E   A     N   +LE SA     V + F T  R
Sbjct: 141 -------KRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMAR 180

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++G+   GK+CLL+ FS D +   Y+ T+  ++ +  +E+D K V+L +WDTAGQE 
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRND 124
           +  +    Y  +  I++ + +   +S   + + W  E+  +  +  + +LVGNK DL++ 
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                   ++ +  V  E   A     N   +LE SA     V + F T  R
Sbjct: 128 -------KRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMAR 167

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 20/186 (10%)
Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           +K+ I+G  + GK+ L I F + QF + Y PT+   +   I V+ ++  L L DTAGQ++
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66
Query: 66  YDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 123
           Y  + P +Y  D +  ++ +S+ S  S E I       +       +PI+LVGNKKDL  
Sbjct: 67  YS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH- 124
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                       +  +  EEG+A+A+  NA A+LE SAK  +   +VF    R  +   +
Sbjct: 125 -----------MERVISYEEGKALAESWNA-AFLESSAKENQTAVDVF----RRIILEAE 168
Query: 184 KKKGRC 189
           K  G C
Sbjct: 169 KMDGAC 174

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDT 60
           A  + +++I+G    GKT L+  F+ D F E    TV  ++ +  +E+  K++ L +WDT
Sbjct: 23  ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDT 82
Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKK 119
           AGQE ++ +    Y     I++ + I   ++ +++P KW   + K+   +  ++LVGNK 
Sbjct: 83  AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKL 141
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
           D   D              +  ++G   AQ+I    + E SAK    V E+F
Sbjct: 142 DCETD------------REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAG EDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             +R   +   +  L  FSI   +S     +  +    VK    NVP +LVGNK DL + 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  EE +  A++ N   Y+E SAK++  V +VF
Sbjct: 126 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVF 160

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++G+   GK+CLL+ FS D +   Y+ T+  ++ +  +E+D K V+L +WDTAGQE 
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRND 124
           +  +    Y  +  I++ + +   +S   + + W  E+  +  +  + +LVGNK DL++ 
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                   ++ +  V  E   A     N   +LE SA     V + F T  R
Sbjct: 128 -------KRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMAR 167

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG    GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                         V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 121 ----------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 16/168 (9%)
Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           +K+ I+G  + GK+ L I F + QF + Y PT+   +   I V+ ++  L L DTAGQ++
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66
Query: 66  YDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 123
           Y  + P +Y  D +  ++ +S+ S  S E I       +       +PI+LVGNKKDL  
Sbjct: 67  YS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH- 124
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                       +  +  EEG+A+A+  NA A+LE SAK  +   +VF
Sbjct: 125 -----------MERVISYEEGKALAESWNA-AFLESSAKENQTAVDVF 160

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG    GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                         V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 121 ----------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KLV+VGD + GKTC++  F    F E    T+  ++ +  +E+  K+V+L +WDTAGQE 
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           +  +    Y   +  ++ + I    S  ++P  W  +V+ +   N+  +L+GNK DL   
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYAGSNIVQLLIGNKSDL--- 146
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                EL +     V   E +++A+  +    +E SAK    V E F
Sbjct: 147 ----SELRE-----VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           KLV +G+ + GKT L+  F  D F   Y  T+  ++++  + ++ + V L LWDTAG E 
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  L P    D+ V ++ + I + +S +    KW  +V+     +V I+LVGNK DL + 
Sbjct: 68  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  EEG   A+++N   ++E SAK+   V+++F     AAL   + 
Sbjct: 126 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA-AALPGMES 172
Query: 185 KKGRCR 190
            + R R
Sbjct: 173 TQDRSR 178

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 17/180 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG    GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       +  L  F+I++  S E+I   +  ++K      +VP++LVGNK DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL--- 121
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
           P+            V  ++ + +A+      ++E SAK+++GV + F T  R   + K+K
Sbjct: 122 PS----------RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG    GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAG- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                         V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 123 ------------RTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQF----PEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
           K +I+GD   GK+CLL  F++ +F    P   +   F   +  IEV  ++++L +WDTAG
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHT-IGVEFGTRI--IEVSGQKIKLQIWDTAG 73
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 121
           QE +  +    Y      LM + I +  S  N    W  + ++   PN  IIL+GNK DL
Sbjct: 74  QERFRAVTRSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                         Q  V  EE +  A++ N   +LE SAK+ E V + F  A +   Q
Sbjct: 133 E------------AQRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           KLV +G+ + GKT L+  F  D F   Y  T+  ++++  + ++ + + L LWDTAGQE 
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  L P    D+   ++ + I + +S +    KW  +V+     +V I+LVGNK DL + 
Sbjct: 68  FRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                      +  V  EEG   A+++N   ++E SAK+   V+++F
Sbjct: 126 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLF 160

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K+V+VG+GA GK+ ++  + K  F + Y  T+  +++   I+V+ + V L LWDTAGQE+
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +D +    Y      ++ FS    +S E I   W  +V     ++P  LV NK DL +D 
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDS 125
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                        +K EE   +A+++    +   S K    V EVF+      LQ
Sbjct: 126 ------------CIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++I+G+ + GKT  L  ++ D F   +V TV  ++ V  I  + K+++L +WDTAG E 
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           Y  +    Y      ++ + I + +S  N  + W+ ++K +   N  ++LVGNK D  + 
Sbjct: 70  YRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                      +  V  E GR +A  +  F + E SAK    V++ FE
Sbjct: 128 -----------ERVVSSERGRQLADHL-GFEFFEASAKDNINVKQTFE 163

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K++I+GD   GKT L+  +   +F   Y  T+  +++  ++ VD + V + +WDTAGQE 
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
           +  L    Y   D  ++ F + +P++ + + + W  E +    P    N P +++GNK D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           L N               V  +  +A     N   Y E SAK    V + F+T  R AL+
Sbjct: 129 LEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG    GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                         V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 121 ----------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K++I+GD   GKT L+  +   +F   Y  T+  +++  ++ VD + V + +WDTAGQE 
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
           +  L    Y   D  ++ F + +P++ + + + W  E +    P    N P +++GNK D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           L N               V  +  +A     N   Y E SAK    V + F+T  R AL+
Sbjct: 129 LEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           KLV +G+ + GKT L+  F  D F   Y  T+  ++++  + ++ + V L LWDTAG E 
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  L P    D+ V ++ + I + +S +    KW  +V+     +V I+LVGNK DL + 
Sbjct: 78  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD- 135
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  EEG   A+++N   ++E SAK+   V+++F     AAL   + 
Sbjct: 136 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA-AALPGMES 182
Query: 185 KKGRCR 190
            + R R
Sbjct: 183 TQDRSR 188

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ +++ F  + F E   PT+   ++   + ++   V+  +WDTAGQE 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           +  L P  Y +    L+ + +  P S       W  E+ +    ++ I LVGNK D    
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKID---- 119
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                 L +  +  V  EEG  +A++     + E SAK+ E V +VF
Sbjct: 120 -----XLQEGGERKVAREEGEKLAEE-KGLLFFETSAKTGENVNDVF 160

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K++I+GD   GKT L+  +   +F   Y  T+  +++  ++ VD + V + +WDTAGQE 
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
           +  L    Y   D  ++ F + +P++ + + + W  E +    P    N P +++GNK D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             N               V  +  +A     N   Y E SAK    V + F+T  R AL+
Sbjct: 129 FEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 22/179 (12%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQF----PEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
           K +I+GD   GK+CLL  F++ +F    P   +   F   +  IEV  ++++L +WDTAG
Sbjct: 32  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHT-IGVEFGTRI--IEVSGQKIKLQIWDTAG 88
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 121
           Q  +  +    Y      LM + I +  S  N    W  + ++   PN  IIL+GNK DL
Sbjct: 89  QGRFRAVTRSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 147
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                         Q  V  EE +  A++ N   +LE SAK+ E V + F  A +   Q
Sbjct: 148 E------------AQRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG    GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       +  L  F+I++  S E+I   +  ++K      +VP++LVGNK DL + 
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
               K+   + +    P              ++E SAK+++GV + F T  R   +++K 
Sbjct: 125 TVDTKQAQDLARSYGIP--------------FIETSAKTRQGVDDAFYTLVR---EIRKH 167
Query: 185 KK 186
           K+
Sbjct: 168 KE 169

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 16/168 (9%)
Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           +K+ I+G  + GK+ L I F + QF +   PT+   +   I V+ ++  L L DTAGQ++
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64
Query: 66  YDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 123
           Y  + P +Y  D +  ++ +S+ S  S E I       +       +PI+LVGNKKDL  
Sbjct: 65  YS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH- 122
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
                       +  +  EEG+A+A+  NA A+LE SAK  +   +VF
Sbjct: 123 -----------MERVISYEEGKALAESWNA-AFLESSAKENQTAVDVF 158

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           KLV +G+ A GKT ++  F  D F   Y  T+  ++++  + +D   V L LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           +  L P    D+   ++ + I +  S EN   KW  ++      +V I LVGNK DL   
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDL--- 118
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF-ETATR 176
                +L K     V  EEG   AQ+ N   + E SAK+   ++ +F +TA++
Sbjct: 119 ----GDLRK-----VTYEEGXQKAQEYNT-XFHETSAKAGHNIKVLFKKTASK 161

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K++I+GD   GKT L+  +   +F   Y  T+  +++  ++ VD + V + +WDTAG E 
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
           +  L    Y   D  ++ F + +P++ + + + W  E +    P    N P +++GNK D
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           L N               V  +  +A     N   Y E SAK    V + F+T  R AL+
Sbjct: 129 LEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           KLV +G+ + GKT L+  F  D F   Y  T+  ++++  + ++ + + L LWDTAG E 
Sbjct: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  L P    D+   ++ + I + +S +    KW  +V+     +V I+LVGNK DL + 
Sbjct: 75  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD- 132
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  EEG   A+++N   ++E SAK+   V+++F     AAL   + 
Sbjct: 133 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA-AALPGMES 179
Query: 185 KKGRCR 190
            + R R
Sbjct: 180 TQDRSR 185

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YVPT+  E +      +   ++  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
           +
Sbjct: 128 D 128

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           ++ + G G  GK+ L++ F K  F E Y+PTV + Y   I  D     L + DT G   +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP--EVKHFCPNVPIILVGNKKDLRND 124
             ++ LS       ++ +SI S  SLE +   +    E+K    ++PI+LVGNK D    
Sbjct: 65  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD--ES 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
           P+            V+  E  A+A+     A++E SAK    V+E+F+
Sbjct: 123 PS----------REVQSSEAEALARTWKC-AFMETSAKLNHNVKELFQ 159

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YVPT+  E +      +   ++  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
           +
Sbjct: 128 D 128

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 13/180 (7%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K+V+ GD A GK+  L+   K++F E    T+  ++ +  + VD ++  L LWDTAGQE 
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
           +  +    +   D +L+ + +    S  NI E W   ++      VPI+LVGNK D+R+ 
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
             T        Q+ V    G  +A    A   L C   +K+G   + E     A +VKK+
Sbjct: 149 AAT------EGQKCVPGHFGEKLAMTYGA---LFCETSAKDG-SNIVEAVLHLAREVKKR 198

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQED 65
           K +++G    GK+CLL  F +++F +    T+   + + +  V  K V+L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y      L+ + I S ++  ++    T       PN+ +IL GNKKDL  DP
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL--DP 144
Query: 126 N---TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
               T  E ++  QE              N   +LE SA + E V E F    R  L 
Sbjct: 145 EREVTFLEASRFAQE--------------NELMFLETSALTGENVEEAFLKCARTILN 188

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F+K++F      T+   +    +E++ K+++  +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    S EN    W  E++     NV + L+GNK DL   
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDL--- 130
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                         V  EE +  AQ+ N   + E SA + E V + FE
Sbjct: 131 ---------AHLRAVPTEESKTFAQE-NQLLFTETSALNSENVDKAFE 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE Y  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 69  QEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
           +
Sbjct: 128 D 128

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQED 65
           K +++G+   GK+CLL  F + +F +    T+   + + I  V  K V+L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
           +  +    Y      L+ + I S ++  N    W  + +     N+ IIL GNKKDL  D
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 125 PN-TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              T  E ++  QE              N   +LE SA + E V E F    R  L 
Sbjct: 131 REVTFLEASRFAQE--------------NELMFLETSALTGENVEEAFVQCARKILN 173

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 17/184 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEV-DSKQVELALWDTAGQE 64
           K+V++GD   GK+ LL  F++D+F      T+  E     I++ ++K ++  +WDTAGQE
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRN 123
            Y  +    Y      L+ + I   +S ENI EKW  E++     N+ I+LVGNK DL++
Sbjct: 69  RYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                          +   +    A+K    A++E SA     V   F         V++
Sbjct: 128 ------------LRVINDNDATQYAKK-EKLAFIETSALEATNVELAFHQLLNEIYNVRQ 174
Query: 184 KKKG 187
           KK+ 
Sbjct: 175 KKQA 178

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
           +
Sbjct: 128 D 128

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQED 65
           K +++G+   GK+CLL  F + +F +    T+   + + I  V  K V+L +WDTAGQE 
Sbjct: 13  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
           +  +    Y      L+ + I S ++  N    W  + +     N+ IIL GNKKDL  D
Sbjct: 73  FRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 125 PN-TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              T  E ++  QE              N   +LE SA + E V E F    R  L 
Sbjct: 132 REVTFLEASRFAQE--------------NELMFLETSALTGEDVEEAFVQCARKILN 174

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 120
Query: 123 N 123
           +
Sbjct: 121 D 121

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 2   AAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWD 59
           +AIR+ K+ ++GD   GK+ ++  F +D F     PT+  +++   +   ++  +  +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNK 118
           TAGQE +  L P+ Y  +   ++ + I   DS   + +KW  E+K   P N+ + + GNK
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137
Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
            DL +          +++ P+K  + +  A+ I A   +E SAK+   + E+F+  +R
Sbjct: 138 CDLSD----------IREVPLK--DAKEYAESIGAIV-VETSAKNAINIEELFQGISR 182

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
           +
Sbjct: 128 D 128

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
           +
Sbjct: 128 D 128

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 74  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIK 132
Query: 123 N 123
           +
Sbjct: 133 D 133

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
           +
Sbjct: 128 D 128

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQV-ELALWDTAGQE 64
           K++I+GD   GKT L+  +  D++ + Y  T+  +++  ++ VD  +V  + +WDTAGQE
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKK 119
            +  L    Y   D  ++ + + +  S ENI + W  E + H   N     P +++GNK 
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           D       + E  K  QE         +A+ +        SAK+   V   FE   R+AL
Sbjct: 129 DAEESKKIVSE--KSAQE---------LAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
Query: 180 Q 180
           Q
Sbjct: 178 Q 178

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KLV+VGDG  GKT  +      +F + Y+ T+  E +      +  +++  +WDTAG E 
Sbjct: 7   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           +  LR   Y +    ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 67  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDVK 122

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KLV+VGDG  GKT  +      +F + Y+ T+  E +      +  +++  +WDTAG E 
Sbjct: 6   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           +  LR   Y +    ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 66  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDVK 121

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQ-----------VEL 55
           KL+ +GD   GKT  L  ++ ++F   ++ TV  ++     V + Q           V L
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 56  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
            LWDTAGQE +  L    + D    L+ F + S  S  N+   W  +++   +C N  I+
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIV 145
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           L+GNK DL +            Q  V   + R +A K     Y E SA + + V +  ET
Sbjct: 146 LIGNKADLPD------------QREVNERQARELADKY-GIPYFETSAATGQNVEKAVET 192

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q K +K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q K +K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L++ F K  F + Y+PT+ + Y   I  D     L + DT G   +  ++ LS    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 78  DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
              ++ FS+ S  SLE +    K   ++K    ++P++LVGNK D               
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-------------ET 127
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF------ETATRAALQVKKKKKGR 188
           Q  V   E +A+AQ+    A++E SAK    V+E+F      ET    +L +  K+ G+
Sbjct: 128 QREVDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGK 185

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q K +K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 11  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 70
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
            E +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 71  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 129
Query: 123 N 123
           +
Sbjct: 130 D 130

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F E Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KLV+VGDG  GKT  +      +F + Y+ T+  E +      +  +++  +WDTAG E 
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           +  LR   Y +    ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 74  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDVK 129

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ E+Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 5   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
            E +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 65  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 123
Query: 123 N 123
           +
Sbjct: 124 D 124

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K++++GD   GKTCL   F   +FP+    T+  ++    +++D +++++ LWDTAGQE 
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 66  YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN-VPIILVGNKKDLR 122
           + + +    Y +   ++  + + +  S  ++P  W  E K H   N +P ILVGNK DLR
Sbjct: 82  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 123 N 123
           +
Sbjct: 141 S 141

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHK 167

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  L    Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 69  QEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
           +
Sbjct: 128 D 128

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYVAD-IEVDSKQVEL 55
           KL+ +GD   GKT  L  ++ ++F   ++ TV          ++   AD     + +V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 56  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
            LWDTAG E +  L    + D    L+ F + S  S  N+   W  +++   +C N  I+
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           L+GNK DL   P+         Q  V   + R +A+K     Y E SA + + V +  ET
Sbjct: 132 LIGNKADL---PD---------QREVNERQARELAEKY-GIPYFETSAATGQNVEKSVET 178

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQED 65
           K +++G+   GK+CLL  F + +F +    T+   + + I  V  K V+L +WDTAG E 
Sbjct: 10  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
           +  +    Y      L+ + I S ++  N    W  + +     N+ IIL GNKKDL  D
Sbjct: 70  FRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 125 PN-TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              T  E ++  QE              N   +LE SA + E V E F    R  L 
Sbjct: 129 REVTFLEASRFAQE--------------NELMFLETSALTGEDVEEAFVQCARKILN 171

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 83  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 128
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 129 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 172

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYVAD-IEVDSKQVEL 55
           KL+ +GD   GKT  L  ++ ++F   ++ TV          ++   AD     + +V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 56  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
            LWDTAG E +  L    + D    L+ F + S  S  N+   W  +++   +C N  I+
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           L+GNK DL   P+         Q  V   + R +A+K     Y E SA + + V +  ET
Sbjct: 132 LIGNKADL---PD---------QREVNERQARELAEKY-GIPYFETSAATGQNVEKSVET 178

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAG
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
            E +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 69  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
           +
Sbjct: 128 D 128

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 18/191 (9%)
Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           +K+VI+G    GKT L   F + +F E Y PTV   Y   + +   +  L L DTAGQ++
Sbjct: 25  RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE 84
Query: 66  YDRLRPLSY-PDTDVILMCFSIDSPDSLENIPEKWTP-EVKHFCPNVPIILVGNKKDLRN 123
           Y  L P S+       ++ +S+ S  S + I   +      H    VP++LVGNK DL  
Sbjct: 85  YSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL-- 141
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
            P          +  V+  EG+ +A+   A  ++E SA+  +  + +F    +   +V+ 
Sbjct: 142 SP----------EREVQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEIARVEN 190
Query: 184 K--KKGRCRLL 192
              ++ RC L+
Sbjct: 191 SYGQERRCHLM 201

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 81  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 126
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 127 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 81  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 126
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 127 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYVAD-IEVDSKQVEL 55
           KL+ +GD   GKT  L  ++ ++F   ++ TV          ++   AD     + +V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 56  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
            LWDTAG E +  L    + D    L+ F + S  S  N+   W  +++   +C N  I+
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           L+GNK DL   P+         Q  V   + R +A+K     Y E SA + + V +  ET
Sbjct: 132 LIGNKADL---PD---------QREVNERQARELAEKY-GIPYFETSAATGQNVEKSVET 178

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
           K++++GD   GKTCL   F   +FP+    T+  ++    +++D +++++ LWDTAGQE 
Sbjct: 31  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 66  YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN-VPIILVGNKKDLR 122
           + + +    Y +   ++  +   +  S  ++P  W  E K H   N +P ILVGNK DLR
Sbjct: 91  FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 123 N 123
           +
Sbjct: 150 S 150

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +  + YV T+  E +      +   ++  +WDTAG
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 74  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIK 132
Query: 123 N 123
           +
Sbjct: 133 D 133

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYVAD-IEVDSKQVEL 55
           KL+ +GD   GKT  L  ++ ++F   ++ TV          ++   AD     + +V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 56  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
            LWDTAG E +  L    + D    L+ F + S  S  N+   W  +++   +C N  I+
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           L+GNK DL   P+         Q  V   + R +A+K     Y E SA + + V +  ET
Sbjct: 132 LIGNKADL---PD---------QREVNERQARELAEKY-GIPYFETSAATGQNVEKSVET 178

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K  L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTA QE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHK 167

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
              V+  + + +A+      Y+E SAK+++GV + F T  R
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I   +  ++K      +VP++LVGNK DL   P+         
Sbjct: 77  EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL---PS--------- 123
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
              V  ++ + +A+      ++E SAK+++GV + F T  R   + K+K
Sbjct: 124 -RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I   +  ++K      +VP++LVGNK DL   P+         
Sbjct: 77  EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL---PS--------- 123
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
              V  ++ + +A+      ++E SAK+++GV + F T  R   + K+K
Sbjct: 124 -RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGN+ DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNRCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 16/182 (8%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F+ D+F      T+  E     IEV++K+++  +WDTAG E 
Sbjct: 12  KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    S EN    W  E++     NV + L+GNK DL + 
Sbjct: 72  YRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLTELRENADDNVAVGLIGNKSDLAH- 129
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                    ++  P    +  AM    N   + E SA + + V + F     A  Q+  K
Sbjct: 130 ---------LRAVPTDEAKNFAME---NQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
Query: 185 KK 186
            +
Sbjct: 178 HQ 179

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y P++ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 82  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 127
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 128 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 171

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DT GQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTA QE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I F +  F   Y PT+ ++Y     +D +   L + DTAGQE++  +R       
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 78  DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L+ FS+    S E I   ++    VK      P+IL+GNK DL +            
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKD-RDEFPMILIGNKADLDH------------ 124
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
           Q  V  EEG+ +A+++    Y+E SAK +  V + F    R
Sbjct: 125 QRQVTQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVR 164

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y P++ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + + PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DT GQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAG+E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S  +I   +  ++K      +VP++LVGNK DL       K+ +++ 
Sbjct: 94  EGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA 152
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
           +    P              ++E SAK+++GV + F T  R   Q + KK
Sbjct: 153 KSYGIP--------------FIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++G+   GKT LL  F++++F      T+  E     + + +  V+  +WDTAG E 
Sbjct: 12  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ F +    +   + E+W  E+  H    + ++LVGNK DL   
Sbjct: 72  YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLS-- 128
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                     +   V  EE R  A+  N   +LE SA     V   FET
Sbjct: 129 ----------QAREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFET 166

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++G+   GKT LL  F++++F      T+  E     + + +  V+  +WDTAG E 
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ F +    +   + E+W  E+  H    + ++LVGNK DL   
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLS-- 143
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                     +   V  EE R  A+  N   +LE SA     V   FET
Sbjct: 144 ----------QAREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFET 181

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F +   PT+ ++Y   + +D +   L + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAG E+Y  +R       
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 81  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 126
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 127 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+   +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL              
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              V+  + + +A+      Y+E SAK+++GV + F T  R   Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAG E+Y  +R       
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           +  L  F+I++  S E+I   +  ++K      +VP++LVGNK DL   P+         
Sbjct: 94  EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL---PS--------- 140
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
              V  ++ + +A+      ++E SAK+++GV + F T  R   + K+K
Sbjct: 141 -RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA----------DIEVDSKQ-VEL 55
           K + +GD   GKT +L  ++  +F   ++ TV  ++            D  V   Q + L
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 56  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPII 113
            LWDTAG E +  L    + D    L+ F + +  S  N+   W  +++   +  N  I+
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
           L GNK DL +            Q  VK EE R +A+K     Y E SA +   +    E
Sbjct: 132 LCGNKSDLED------------QRAVKEEEARELAEKY-GIPYFETSAANGTNISHAIE 177

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L + F    F E Y PT+ + Y  +IEVDS    L + DTAG E +  +R L   + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 78  DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
              ++ +S+ +  S ++I         VK +   VP+ILVGNK DL ++           
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREV-------- 126
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                  EGRA+A++     ++E SAKSK  V E+F    R
Sbjct: 127 ----SSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVR 162

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
           K+++VG+   GK+ L   F   Q    + P   E+ Y   I VD ++V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 66  YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLR 122
               LR       D  L+ FS+    S   +PE     ++   P+  +P+ILVGNK DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL- 142
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                       +   V  EEGR +A  ++   ++E SA      RE+FE A R
Sbjct: 143 -----------ARSREVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR 184

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 18/168 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED- 65
           KL I G    GK+ L++ F   +F   Y PT+   Y     +D + V + + DTAGQED 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT 89
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENI-PEKWTPEVKHFCPNVPIILVGNKKDLRND 124
             R   + + +  V++  + I    S E + P K   +      NV +ILVGNK DL + 
Sbjct: 90  IQREGHMRWGEGFVLV--YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH- 146
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEG-VREVF 171
                         V  EEG  +A ++ A A+ ECSA + EG + E+F
Sbjct: 147 -----------SRQVSTEEGEKLATEL-ACAFYECSACTGEGNITEIF 182

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K+ ++GD   GK+ ++  F +D F     PT+  +++   ++  ++  +  +WDTAGQE 
Sbjct: 7   KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  L P+ Y  +   ++ + I   ++   + + W  E++ H  P++ + + GNK DL + 
Sbjct: 67  FRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTD- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
              ++E        V   + +  A  I+A  ++E SAK+   + E+F   +R
Sbjct: 125 ---VRE--------VMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 164

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I F +  F   Y PT+ ++Y     VD     L + DTAGQE++  +R       
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 78  DVILMCFSIDSPDSLENIPEKWTP--EVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
              L+ F+I+   S   + + +T    VK    + P++LVGNK DL +            
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES------------ 128
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
           Q  V   E  A     +  AY E SAK +  V E FE   RA  + ++++
Sbjct: 129 QRQVPRSEASAFGAS-HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 20/185 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEV-DSKQVELALWDTAGQE 64
           K+V++GDGA GKT L   F+++ F + Y  T+  + ++  I +  +  V L +WD  GQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPII-LVGNKKD 120
              ++          +L+ + I +  S EN+ E W   VK         P++ LVGNK D
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           L +               +KPE+     Q+ N F+    SAK+ + V   F+      L 
Sbjct: 127 LEH------------MRTIKPEKHLRFCQE-NGFSSHFVSAKTGDSVFLCFQKVAAEILG 173
Query: 181 VKKKK 185
           +K  K
Sbjct: 174 IKLNK 178

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 2   AAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWD 59
           +A+R+ K+ ++GD   GK+ ++  F +D F     PT+  +++   ++  ++  +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 118
           TAG E +  L P+ Y  +   ++ + I   ++   + + W  E++ H  P++ + + GNK
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120
Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
            DL +    ++E        V   + +  A  I+A  ++E SAK+   + E+F   +R
Sbjct: 121 CDLTD----VRE--------VMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 165

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 16/147 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I F +  F + Y PT+ ++Y+   E+D++   L + DTAGQE++  +R       
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 78  DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           D  L+ +S+    S E++    +    VK    + P+ILV NK DL            M 
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL------------MH 137
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAK 162
              V  ++G+ MA K N   Y+E SAK
Sbjct: 138 LRKVTRDQGKEMATKYN-IPYIETSAK 163

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQED 65
           K+++VG+   GK+ L   F   Q    + +    + Y   I VD ++V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66  YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLR 122
               L+       D  L+ FS+    S   +PE     ++   P+  +P+ILVGNK DL 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL- 121
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                       +   V  EEGR +A  ++   ++E SA      RE+FE A R
Sbjct: 122 -----------ARSREVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR 163

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I F +  F + Y PT+ ++Y    E+D++   L + DTAGQE++  +R       
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 78  DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           D  L+ +S+    S E++    +    VK    + P+ILV NK DL            M 
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL------------MH 137
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAK 162
              V  ++G+ MA K N   Y+E SAK
Sbjct: 138 LRKVTRDQGKEMATKYN-IPYIETSAK 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I F +  F   Y PT+ ++Y+   E+D++   L + DTAGQE++  +R       
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 78  DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           D  L+ +S+    S E++    +    VK    + P+ILV NK DL            M 
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL------------MH 137
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAK 162
              V  ++G+ MA K N   Y+E SAK
Sbjct: 138 LRKVTRDQGKEMATKYN-IPYIETSAK 163

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 18  KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
           K+ L I F +  F   Y PT+ ++Y+   E+D++   L + DTAGQE++  +R       
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 78  DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
           D  L+ +S+    S E++    +    VK    + P+ILV NK DL            M 
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL------------MH 132
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAK 162
              V  ++G+ MA K N   Y+E SAK
Sbjct: 133 LRKVTRDQGKEMATKYN-IPYIETSAK 158

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQED 65
           K++++G+   GK+ L   F   Q    + +    + Y   I VD ++V L ++D   Q D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66  YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLR 122
               L+       D  L+ FS+    S   +PE     ++   P+  +P+ILVGNK DL 
Sbjct: 74  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL- 131
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                       +   V  EEGR +A  ++   ++E SA      RE+FE A R
Sbjct: 132 -----------ARSREVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR 173

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 54/203 (26%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSK------------ 51
           K V++G+ + GK+ +++  +KD F E    T+   F  YV ++   +             
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 52  -----------------------QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 88
                                   ++  +WDTAGQE Y  + PL Y      ++ F I +
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 89  PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA 148
            ++L+   + W  ++K    N  IILV NK D       I E+ K  Q+           
Sbjct: 129 SNTLDR-AKTWVNQLK-ISSNYIIILVANKIDKNKFQVDILEVQKYAQD----------- 175
Query: 149 QKINAFAYLECSAKSKEGVREVF 171
              N   +++ SAK+   ++ +F
Sbjct: 176 ---NNLLFIQTSAKTGTNIKNIF 195

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 7   KLVIVGDGACGKTCLLIVF-----SKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
           ++V++G+   GK+ L  +F     S D   EV     +E  +      +  + L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKD 120
           G+ ++  L        D  L+ +SI    S E   E +          ++PIILVGNK D
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA-L 179
           L            ++   V   EGRA A   +   ++E SA  +  V+E+FE   R   L
Sbjct: 126 L------------VRXREVSVSEGRAXAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRL 172
Query: 180 QVKKKKKGRCRL 191
           +   K+K   RL
Sbjct: 173 RRDSKEKNERRL 184

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--FENYVADIEVDSKQVELALWDTAGQE 64
           K+ ++GDG  GKT  +      +F + Y  TV    + V  ++     ++  +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRN 123
               L+ + Y      ++ F + S  + +N+  +W  E +    N  PI++  NK D++N
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163
                K   K+  E +K +           + Y E SAK+
Sbjct: 132 RQKISK---KLVMEVLKGKN----------YEYFEISAKT 158

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 7   KLVIVGDGACGKTCLLIVF-----SKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
           ++V++G+   GK+ L  +F     S D   EV     +E  +      +  + L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKD 120
           G+ ++  L        D  L+ +SI    S E   E +          ++PIILVGNK D
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA-L 179
           L            ++   V   EGRA A   +   ++E SA  +  V+E+FE   R   L
Sbjct: 126 L------------VRXREVSVSEGRAXAVVFDX-KFIETSAAVQHNVKELFEGIVRQVRL 172
Query: 180 QVKKKKKGRCRL 191
           +   K+K   RL
Sbjct: 173 RRDSKEKNERRL 184

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           ++V++GD   GKT L  +F+  Q  +++     + Y   + VD +   L + DT   E  
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 67  DR--LRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRN 123
           D+   +          ++ +SI    S E+  E +      H   +VPIILVGNK DL  
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL-- 123
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                      +   V  EEGRA A   +   ++E SA  +  V E+FE
Sbjct: 124 ----------ARCREVSVEEGRACAVVFDC-KFIETSATLQHNVAELFE 161

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 7   KLVIVGDGACGKTCLLIVF-----SKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
           ++V++G+   GK+ L  +F     S D   EV     +E  +      +  + L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKD 120
           G+ ++  L        D  L+ +SI    S E   E +          ++PIILVGNK D
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           L            ++   V   EGRA A   +   ++E SA  +  V+E+FE   R   Q
Sbjct: 126 L------------VRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVR---Q 169
Query: 181 VKKKK 185
           V+ ++
Sbjct: 170 VRLRR 174

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 24/188 (12%)
Query: 7   KLVIVGDGACGKTCLLIVF-----SKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
           ++V++G+   GK+ L  +F     S D   EV     +E  +      +  + L +W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKD 120
           G+ ++  L        D  L+ +SI    S E   E +          ++PIILVGNK D
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 156
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           L            ++   V   EGRA A   +   ++E SA  +  V+E+FE   R   Q
Sbjct: 157 L------------VRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVR---Q 200
Query: 181 VKKKKKGR 188
           V+ ++  +
Sbjct: 201 VRLRRDSK 208

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +L +VG    GKT  + V +  QF E  +PTV  N     +V    V + +WD  GQ  +
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMR---KVTKGNVTIKIWDIGGQPRF 80
Query: 67  DRLRPLSYPDTDVILMCFSIDSPD---------SLENIPEKWTPEVKHFCPNVPIILVGN 117
             +        + I+  + ID+ D          L N+ +K  P+++     +P++++GN
Sbjct: 81  RSMWERYCRGVNAIV--YMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVLVLGN 132
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEE 143
           K+DL N  +  + + KM    ++  E
Sbjct: 133 KRDLPNALDEKQLIEKMNLSAIQDRE 158

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSK-DQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           K++++G    GK+ L  +F   +  PE         Y   I VD ++  L ++D   Q+ 
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRND 124
              L        D  ++ +S+    S E   E +          +VPIILVGNK DL   
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL--- 118
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                    ++   V  +EGRA A   +   ++E SA     V+ +FE   R
Sbjct: 119 ---------VRSREVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVR 160

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSK-DQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           K++++G    GK+ L  +F   +  PE         Y   I VD ++  L ++D   Q+ 
Sbjct: 9   KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRND 124
              L        D  ++ +S+    S E   E +          +VPIILVGNK DL   
Sbjct: 67  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL--- 123
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                    ++   V  +EGRA A   +   ++E SA     V+ +FE   R
Sbjct: 124 ---------VRSREVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVR 165

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 7   KLVIVGDGACGKTCLLIVFSK-DQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           K++++G    GK+ L  +F   +  PE         Y   I VD ++  L ++D   Q+ 
Sbjct: 9   KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRND 124
              L        D  ++ +S+    S E   E +          +VPIILVGNK DL   
Sbjct: 67  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL--- 123
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                    ++   V  +EGRA A   +   ++E SA     V+ +FE   R
Sbjct: 124 ---------VRSREVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVR 165

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 20/176 (11%)
Query: 8   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67
           L I+G    GK+ L + F   +F   Y P + + Y ++  VD + V L + DTA   D D
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA---DLD 80
Query: 68  RLRPLS-YPD-TDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPIILVGNKKDLR 122
             R    Y +     L+ +S+DS  S ++     E      K    ++P +L+GNK D+ 
Sbjct: 81  TPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM- 139
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
                       +   V   EG A+A +     +   +    E V+ VF  A R A
Sbjct: 140 -----------AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +L +VG    GKT  + V +  QF E  +PTV  N     ++    V + LWD  GQ  +
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR---KITKGNVTIKLWDIGGQPRF 80
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDS---------LENIPEKWTPEVKHFCPNVPIILVGN 117
             +          I+  + +D+ D          L N+ +K  P+++     +P++++GN
Sbjct: 81  RSMWERYCRGVSAIV--YMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGN 132
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEE 143
           K+DL    +  + + KM    ++  E
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQDRE 158

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +L +VG    GKT  + V +  QF E  +PTV  N     ++    V + LWD  GQ  +
Sbjct: 33  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR---KITKGNVTIKLWDIGGQPRF 89
Query: 67  DRLRPLSYPDTDVILMCFSIDSPDS---------LENIPEKWTPEVKHFCPNVPIILVGN 117
             +          I+  + +D+ D          L N+ +K  P+++     +P++++GN
Sbjct: 90  RSMWERYCRGVSAIV--YMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGN 141
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEE 143
           K+DL    +  + + KM    ++  E
Sbjct: 142 KRDLPGALDEKELIEKMNLSAIQDRE 167

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VAD--IEVDSKQ---VELALW 58
           R KL IVG+   GKT LL    K +  ++   +      V D  I++  K+   + L +W
Sbjct: 2   RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 59  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
           D AG+E++    P       + L  + +    +  +  + W   +K    + P+ILVG  
Sbjct: 62  DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTH 121
Query: 119 KDLRND 124
            D+ ++
Sbjct: 122 LDVSDE 127

>pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 8   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67
           + I+G    GKT LL      +  E     + + ++   +V     ++   DT G E + 
Sbjct: 11  VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQ-HIGAYQVTVNDKKITFLDTPGHEAFT 69
Query: 68  RLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
            +R      TD++++  + D    P ++E I             NVPII+  NK D + +
Sbjct: 70  TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAK-------AANVPIIVAINKMD-KPE 121
Query: 125 PNTIKELNKMKQEPVKPEE--GRAMAQKINAFAYLECSAKSKEGVREVFE 172
            N  + + ++ +  + PEE  G  +        + + SAK+KEG+  + E
Sbjct: 122 ANPDRVMQELMEYNLVPEEWGGDTI--------FCKLSAKTKEGLDHLLE 163

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSK--DQFPEVYVPTV-FENYVADIEV--DSKQVELA 56
           A +R K+ +VG+   GK+ L+ +F+    +F + Y  T   E  VA + +   +  VEL 
Sbjct: 17  ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELF 76
Query: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN----VPI 112
           L DTAG + Y       +      ++ F + S +S E+  + W   +K   P+    +  
Sbjct: 77  LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRA 135
Query: 113 ILVGNKKDL 121
           +LV NK DL
Sbjct: 136 VLVANKTDL 144

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
           ++++VG  A GKT +L    K +  EV   +PT+  N      V+ + +   +WD  GQ 
Sbjct: 19  RILMVGLDAAGKTTILY---KVKLGEVVTTIPTIGFNVET---VEFRNISFTVWDVGGQ- 71
Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKD 120
             D++RPL    Y +TD ++     +  + +++  E+    +        IILV  NK+D
Sbjct: 72  --DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQD 129
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETAT 175
           L N  +  +   K+    ++           N F    C+ +  +G+ E F+  T
Sbjct: 130 LPNAMSAAEVTEKLHLNTIRER---------NWFIQSTCATRG-DGLYEGFDWLT 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-123
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-122
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-121
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-120
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-120
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-118
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-117
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-117
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-116
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-115
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-114
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-112
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-111
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-99
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	8e-51
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-50
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-49
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-49
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-49
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-49
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-49
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-49
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-49
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-48
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-48
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-48
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	7e-48
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-47
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-47
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	4e-47
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	7e-46
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	9e-46
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-45
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	9e-45
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-44
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-43
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-42
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-42
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-42
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-42
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-42
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-42
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	6e-42
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-41
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-41
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-41
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-41
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-41
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-41
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	4e-41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	5e-41
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	6e-41
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	8e-41
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-40
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-40
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-40
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-40
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-40
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-40
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-40
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-40
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-40
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-40
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-40
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-40
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	5e-40
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-39
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-39
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-39
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-39
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	3e-39
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-39
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-39
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	9e-38
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-37
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-37
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-37
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	9e-37
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	9e-36
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	4e-35
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-32
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-17
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-17
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-13
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-13
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-13
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	8e-13
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-12
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-12
2ged_A	193	SR-beta, signal recognition particle receptor beta	5e-10
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-09
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-09
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	5e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-04
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	3e-04
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	3e-04
3evp_A	243	Circular-permutated green fluorescent protein; EGF	5e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	6e-04

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  344 bits (885), Expect = e-123
 Identities = 163/181 (90%), Positives = 170/181 (93%)

Query: 1   MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
           MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 21  MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 80

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 140

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           LR D +T +EL KMKQEPV+ EEGR MA +I+AF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

Query: 181 V 181
           V
Sbjct: 201 V 201

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  343 bits (881), Expect = e-122
 Identities = 153/185 (82%), Positives = 168/185 (90%)

Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
           + IRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVD KQVELALWDTA
Sbjct: 22  SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           GQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKDL
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
           R+D +   EL +MKQEPV+ ++GRAMA +I A+ YLECSAK+KEGVREVFETATRAALQ 
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

Query: 182 KKKKK 186
           +   +
Sbjct: 202 RYGSQ 206

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  339 bits (872), Expect = e-121
 Identities = 93/178 (52%), Positives = 122/178 (68%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V+VGDG CGKT LL+VF+   FPE Y PTVFE Y+ +++V  K V L +WDTAGQ+DY
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPL YPD  V+L+CF + SP+S +NI  +W PEV HFC  VPII+VG K DLR D +
Sbjct: 96  DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
            + +L +   EPV    G+ MA+ + A AYLECSA+  + V  VF+ A   AL  + +
Sbjct: 156 LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRGR 213

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  338 bits (870), Expect = e-120
 Identities = 87/191 (45%), Positives = 128/191 (67%), Gaps = 5/191 (2%)

Query: 1   MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
           M+  +  K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++ VD + V L LWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63

Query: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
           TAGQEDY RLRPLSY   D+ ++ FS+ S  S EN+ +KW PE++ F PNVPI+LVG K 
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           DLR+D   + +        +   +G  + ++I A AY+ECS+K+++ V+ VF+TA +  L
Sbjct: 124 DLRDDKGYLAD----HTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179

Query: 180 QVKKKKKGRCR 190
           Q  ++K+   R
Sbjct: 180 QPPRRKEVPRR 190

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  336 bits (864), Expect = e-120
 Identities = 82/180 (45%), Positives = 126/180 (70%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKT L++ ++ + +P  Y+PT F+N+ A + VD + V L L DTAGQ+++
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           D+LRPL Y +TD+ L+CFS+ SP S +N+ EKW PE++  CP  PIILVG + DLR D  
Sbjct: 82  DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
            + EL+K K++PV  E  + +A++I A +Y+ECSA +++ ++EVF+ A  A +Q    ++
Sbjct: 142 VLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQ 201

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  332 bits (854), Expect = e-118
 Identities = 91/178 (51%), Positives = 129/178 (72%), Gaps = 1/178 (0%)

Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
           ++ K+V+VGD  CGKT LL VF+KD FPE YVPTVFENY A  E+D++++EL+LWDT+G 
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
             YD +RPLSYPD+D +L+CF I  P++L+++ +KW  E++ FCPN  ++LVG K DLR 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQ 180
           D +T+ EL+  +Q PV  ++G  MA++I A  Y+ECSA   E  VR++F  AT A + 
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  330 bits (849), Expect = e-117
 Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 10/180 (5%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V+VGDGA GKTCLL+ FSK + P  YVPTVFEN+   ++  +++  L LWDTAGQE+Y
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSY D+DV+L+CF++++  S +NI  KW PE+KH+      +LVG K DLR D  
Sbjct: 85  DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD-- 142

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
                     + V  +EG  + QK+   AY+E S+ +K G+ EVFE +       K   K
Sbjct: 143 --------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPVPK 194

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  329 bits (846), Expect = e-117
 Identities = 104/173 (60%), Positives = 130/173 (75%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 91

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 92  DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L
Sbjct: 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  326 bits (838), Expect = e-116
 Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 3/181 (1%)

Query: 1   MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
           M+A R  K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+   V L LWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62

Query: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPI+LVG K 
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           DLR+D      ++     P+   +G  + + I A AY+ECS+KS+E V+ VF+ A R  L
Sbjct: 123 DLRDDKQFF--IDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

Query: 180 Q 180
           Q
Sbjct: 181 Q 181

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  323 bits (831), Expect = e-115
 Identities = 91/179 (50%), Positives = 129/179 (72%), Gaps = 1/179 (0%)

Query: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
            ++ K+V+VGD  CGKT LL VF+KD FPE YVPTVFENY A  E+D++++EL+LWDT+G
Sbjct: 5   NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 64

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
              YD +RPLSYPD+D +L+CF I  P++L+++ +KW  E++ FCPN  ++LVG K DLR
Sbjct: 65  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQ 180
            D +T+ EL+  +Q PV  ++G  MA++I A  Y+ECSA   E  VR++F  AT A + 
Sbjct: 125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  321 bits (825), Expect = e-114
 Identities = 95/179 (53%), Positives = 132/179 (73%)

Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
            A+  K V+VGDGA GKTCLL+ ++ D FPE YVPTVF++Y   + V  KQ  L L+DTA
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           GQEDYDRLRPLSYP TDV L+CFS+ +P S +N+ E+W PE+K + PNVP +L+G + DL
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           R+DP T+  LN MK++P+  E+G+ +A++I A  Y+ECSA +++G++ VF+ A  A L 
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  317 bits (815), Expect = e-112
 Identities = 106/185 (57%), Positives = 133/185 (71%)

Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
           +    K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           GQEDYDRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
           R+D +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L  
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 182 KKKKK 186
              KK
Sbjct: 182 PPVKK 186

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  314 bits (807), Expect = e-111
 Identities = 82/189 (43%), Positives = 122/189 (64%), Gaps = 1/189 (0%)

Query: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
              R KLV+VGD  CGKT +L V +KD +PE YVPTVFENY A +E + ++VEL+LWDT+
Sbjct: 24  VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTS 83

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
           G   YD +RPL Y D+D +L+CF I  P+++++  +KW  E+  +CP+  ++L+G K DL
Sbjct: 84  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDL 143

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQ 180
           R D +T+ EL+  KQ P+  E+G A+A+++ A  YLE SA + E  +  +F TA+   L 
Sbjct: 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203

Query: 181 VKKKKKGRC 189
                  + 
Sbjct: 204 KPSPLPQKS 212

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  289 bits (740), Expect = 3e-99
 Identities = 101/176 (57%), Positives = 128/176 (72%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
             K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAG E
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
           DYDRLRPLSYP TDV L+CFS+ SP S  ++  KW PEV+H CPN PIILVG K DLR+D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
            +TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L 
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  160 bits (408), Expect = 8e-51
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 18/181 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           ++ + G G  GK+ L++ F K  F E Y+PTV + Y   I  D     L + DT G   +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP--EVKHFCPNVPIILVGNKKDLRND 124
             ++ LS       ++ +SI S  SLE +   +    E+K    ++PI+LVGNK D    
Sbjct: 65  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                     ++  V+  E  A+A+     A++E SAK    V+E+F+         K++
Sbjct: 125 ----------RE--VQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLN---LEKRR 168

Query: 185 K 185
            
Sbjct: 169 T 169

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  160 bits (407), Expect = 2e-50
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 19/197 (9%)

Query: 1   MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
           M  +R  K+VI+G    GKT L   F + +F E Y PTV   Y   + +   +  L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78

Query: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGN 117
           TAGQ++Y  L           ++ +S+ S  S + I E    ++   H    VP++LVGN
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137

Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           K DL              +  V+  EG+ +A+   A  ++E SA+  +  + +F    + 
Sbjct: 138 KADLSP------------EREVQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQE 184

Query: 178 --ALQVKKKKKGRCRLL 192
              ++    ++ RC L+
Sbjct: 185 IARVENSYGQERRCHLM 201

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  158 bits (402), Expect = 1e-49
 Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 32/204 (15%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           ++V+ G G  GK+ L++ F K  F + Y+PT+ + Y   I  D     L + DT G   +
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF 69

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
             ++ LS       ++ FS+ S  SLE +    K   ++K    ++P++LVGNK D    
Sbjct: 70  PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE--- 126

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR-------- 176
                      Q  V   E +A+AQ+    A++E SAK    V+E+F+            
Sbjct: 127 ----------TQREVDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELLTLETRRNMS 175

Query: 177 --------AALQVKKKKKGRCRLL 192
                      +   + KG+C L+
Sbjct: 176 LNIDGKRSGKQKRTDRVKGKCTLM 199

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  157 bits (400), Expect = 2e-49
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 19/182 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R   +   +  L  FSI   +S       +  ++       NVP +LVGNK DL + 
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLED- 137

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  EE +  A++ N   Y+E SAK++  V +VF    R   +++ +
Sbjct: 138 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMR---EIRAR 182

Query: 185 KK 186
           K 
Sbjct: 183 KM 184

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  157 bits (400), Expect = 2e-49
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 17/181 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG G  GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 82

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       +  L  F+I++  S  +I   +  ++K      +VP++LVGNK DL   
Sbjct: 83  SAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDL--- 138

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                         V  ++   +A+      ++E SAK+++GV + F T  R   Q + K
Sbjct: 139 ----------PTRTVDTKQAHELAKSYGI-PFIETSAKTRQGVEDAFYTLVREIRQYRMK 187

Query: 185 K 185
           K
Sbjct: 188 K 188

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  157 bits (399), Expect = 2e-49
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 20/190 (10%)

Query: 1   MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
           M   +  K+ I+G  + GK+ L I F + QF + Y PT+   +   I V+ ++  L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60

Query: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGN 117
           TAGQ++Y         D +  ++ +S+ S  S E I +    ++        +PI+LVGN
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119

Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           KKDL  +          +   +  EEG+A+A+  NA A+LE SAK  +   +VF      
Sbjct: 120 KKDLHME----------RV--ISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIIL- 165

Query: 178 ALQVKKKKKG 187
             + +K    
Sbjct: 166 --EAEKMDGA 173

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  157 bits (399), Expect = 2e-49
 Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 19/184 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG G  GK+ L I F +  F   Y PT+ ++Y     VD     L + DTAGQE++
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 70

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R          L+ F+I+   S   +  K   ++       + P++LVGNK DL + 
Sbjct: 71  GAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQ 129

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                     +Q  V   E  A     +  AY E SAK +  V E FE   R    V+K 
Sbjct: 130 ----------RQ--VPRSEASAFGASHHV-AYFEASAKLRLNVDEAFEQLVR---AVRKY 173

Query: 185 KKGR 188
           ++  
Sbjct: 174 QEQE 177

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  157 bits (399), Expect = 3e-49
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 28/199 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG    GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       +  L  F+I++  S E+I   +  ++K      +VP++LVGNK DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL--- 121

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV--- 181
                         V  ++ + +A+      ++E SAK+++GV + F T  R   +    
Sbjct: 122 ----------PSRTVDTKQAQDLARSYGI-PFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

Query: 182 --------KKKKKGRCRLL 192
                   KKK K +C ++
Sbjct: 171 MSKDGKKKKKKSKTKCVIM 189

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  156 bits (397), Expect = 3e-49
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V++G G  GK+ L + F    F E Y PT+ + Y  +IEVDS    L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R L   +    ++ +S+ +  S ++I +    ++        VP+ILVGNK DL + 
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLES- 122

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                      +  V   EGRA+A++     ++E SAKSK  V E+F    R   Q+  
Sbjct: 123 -----------EREVSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVR---QMNY 166

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  154 bits (393), Expect = 1e-48
 Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 18/179 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L + F +  F E Y PT+ ++Y   +EVD +Q  L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R L   +     + +SI +  +  ++ +    ++       +VP+ILVGNK DL + 
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLED- 122

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                      +  V  E+G+ +A++    A+LE SAKSK  V E+F    R   Q+ +
Sbjct: 123 -----------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR---QINR 167

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  155 bits (394), Expect = 1e-48
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 19/180 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R   +   +  L  FSI   +S       +  ++       NVP +LVGNK DL + 
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLED- 123

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  EE +  A + N   Y+E SAK++  V +VF    R   +++ +
Sbjct: 124 -----------KRQVSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMR---EIRAR 168

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  154 bits (391), Expect = 2e-48
 Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 20/179 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG G  GK+ L I   ++ F +   PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       +  L  F+I++  S E+I  ++  ++K      +VP++LVGNK DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL--- 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                         V+  + + +A+      Y+E SAK+++GV + F T  R   ++++
Sbjct: 121 ----------AARTVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVR---EIRQ 165

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  154 bits (391), Expect = 7e-48
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 19/182 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKKDLRND 124
             +R   +   +  L  FSI   +S       +  ++       NVP +LVGNK DL + 
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLED- 133

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  EE +  A++ N   Y+E SAK++  V +VF    R   +++ +
Sbjct: 134 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMR---EIRAR 178

Query: 185 KK 186
           K 
Sbjct: 179 KM 180

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  151 bits (385), Expect = 2e-47
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 21/183 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
           K+++VG+   GK+ L   F   Q    +     E+ Y   I VD ++V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 66  YD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKKDLR 122
               L+       D  L+ FS+    S   +PE     ++      ++P+ILVGNK DL 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
                       ++  V  EEGR +A  ++   ++E SA      RE+FE A R   Q++
Sbjct: 123 RS----------RE--VSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR---QIR 166

Query: 183 KKK 185
            ++
Sbjct: 167 LRR 169

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  152 bits (386), Expect = 3e-47
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 21/184 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
           K+++VG+   GK+ L   F   Q    + P   E+ Y   I VD ++V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 66  YD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKKDLR 122
               LR       D  L+ FS+    S   +PE     ++      ++P+ILVGNK DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
                       ++  V  EEGR +A  ++   ++E SA      RE+FE A R   Q++
Sbjct: 144 RS----------RE--VSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR---QIR 187

Query: 183 KKKK 186
            ++ 
Sbjct: 188 LRRG 191

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  151 bits (384), Expect = 4e-47
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 20/181 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VGDG  GK+ L I F +  F + Y PT+ ++Y+   E+D++   L + DTAGQE++
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R       D  L+ +S+    S E++ +++   +       + P+ILV NK DL + 
Sbjct: 80  SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMH- 137

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQVKK 183
                         V  ++G+ MA K N   Y+E SAK     V + F    R    +++
Sbjct: 138 -----------LRKVTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLVR---VIRQ 182

Query: 184 K 184
           +
Sbjct: 183 Q 183

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  148 bits (375), Expect = 7e-46
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 21/184 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           ++V++GD   GKT L  +F+  Q  +++     + Y   + VD +   L + DT   E  
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65

Query: 67  DR--LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKKDLR 122
           D+   +          ++ +SI    S E+   +   +++  H   +VPIILVGNK DL 
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLA 124

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
                           V  EEGRA A   +   ++E SA  +  V E+FE   R   Q++
Sbjct: 125 R------------CREVSVEEGRACAVVFDC-KFIETSATLQHNVAELFEGVVR---QLR 168

Query: 183 KKKK 186
            +++
Sbjct: 169 LRRR 172

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  148 bits (375), Expect = 9e-46
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 21/181 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
           K+ IVG+ + GK+ L+  +    + +   P      +  +I VD +   L + D  G  +
Sbjct: 22  KVGIVGNLSSGKSALVHRYLTGTYVQEESPE--GGRFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN 123
                       D ++  FS++   S + +   +   +  F     VP++LVG +  +  
Sbjct: 80  LQFAA-----WVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                          +     R ++  +    Y E  A     V  VF+   +  + ++K
Sbjct: 134 A----------NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183

Query: 184 K 184
           K
Sbjct: 184 K 184

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  147 bits (373), Expect = 2e-45
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 21/182 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
            L I+G    GK+ L + F   +F   Y P + + Y ++  VD + V L + DTA  +  
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP 82

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPIILVGNKKDLRN 123
            R            L+ +S+DS  S ++     E      K    ++P +L+GNK D+  
Sbjct: 83  -RNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK-SKEGVREVFETATRAALQVK 182
                      +Q  V   EG A+A +     + E SA    E V+ VF  A R   + +
Sbjct: 142 Y----------RQ--VTKAEGVALAGRFGC-LFFEVSACLDFEHVQHVFHEAVR---EAR 185

Query: 183 KK 184
           ++
Sbjct: 186 RE 187

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  145 bits (369), Expect = 5e-45
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 20/181 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K++++G    GK+ L  +F                Y   I VD ++  L ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             L        D  ++ +S+    S E    +   +++      +VPIILVGNK DL   
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVR- 120

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                         V  +EGRA A   +   ++E SA     V+ +FE   R   Q++ +
Sbjct: 121 -----------SREVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVR---QIRLR 165

Query: 185 K 185
           +
Sbjct: 166 R 166

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  146 bits (370), Expect = 9e-45
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 21/182 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KL I G    GK+ L++ F   +F   Y PT+   Y     +D + V + + DTAGQED 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT 89

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
              R       +  ++ + I    S E +       +       NV +ILVGNK DL + 
Sbjct: 90  -IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHS 147

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK-SKEGVREVFETATRAALQVKK 183
                     +Q  V  EEG  +A ++   A+ ECSA   +  + E+F    R   +V++
Sbjct: 148 ----------RQ--VSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELCR---EVRR 191

Query: 184 KK 185
           ++
Sbjct: 192 RR 193

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  143 bits (363), Expect = 4e-44
 Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 19/177 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K+V+VG+GA GK+ ++  + K  F + Y  T+   F      I+V+ + V L LWDTAGQ
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL--ERQIQVNDEDVRLMLWDTAGQ 64

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
           E++D +    Y      ++ FS    +S E I   W  +V     ++P  LV NK DL +
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLD 123

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                          +K EE   +A+++    +   S K    V EVF+      LQ
Sbjct: 124 ------------DSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  143 bits (364), Expect = 1e-43
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 17/180 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KLV+VGDG  GKT  +      +F + YV T+  E +      +   ++  +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++  
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD-- 133

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
                  K+K       +     +K N   Y + SAKS     + F    R  +     +
Sbjct: 134 ------RKVK------AKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  139 bits (353), Expect = 2e-42
 Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 24/182 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K++++GDG  GK+ L+  +  ++F      T+   F N   D+EVD   V + +WDTAGQ
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN--KDLEVDGHFVTMQIWDTAGQ 66

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
           E +  LR   Y  +D  L+ FS+D   S +N+   W  E  ++       + P +++GNK
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNK 125

Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
            D+             +Q  V  EE +A  +    + Y E SAK    V   FE A R  
Sbjct: 126 IDISE-----------RQ--VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

Query: 179 LQ 180
           L 
Sbjct: 173 LA 174

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  140 bits (355), Expect = 2e-42
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 23/185 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K+V+ GD A GK+  L+   K++F E    T+   F+     + VD ++  L LWDTAGQ
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKT--LIVDGERTVLQLWDTAGQ 87

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
           E   R R ++   +   D +L+ + +    S  NI  +W   ++      VPI+LVGNK 
Sbjct: 88  E---RFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKA 143

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           D+R+            Q+ V    G  +A    A  + E SAK    + E      R   
Sbjct: 144 DIRDTA------ATEGQKCVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAR--- 193

Query: 180 QVKKK 184
           +VKK+
Sbjct: 194 EVKKR 198

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  139 bits (353), Expect = 2e-42
 Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 19/182 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KL+I+GD   GK+ LL+ F+ + F   Y+ T+   F+  +  +E++ ++V+L +WDTAGQ
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFK--IRTVEINGEKVKLQIWDTAGQ 68

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
           E +  +    Y  T  +++ + + S +S  N+ ++W  E+   C +V  ILVGNK D   
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPE 127

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                       ++ V+ E+    A ++      E SAK    V E+F   T   L+ KK
Sbjct: 128 ------------RKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKK 174

Query: 184 KK 185
             
Sbjct: 175 DN 176

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  139 bits (353), Expect = 3e-42
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 25/181 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           +++I+G    GKT L+  F+ D F E    TV   F+     +E+  K++ L +WDTAGQ
Sbjct: 28  QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKT--VELRGKKIRLQIWDTAGQ 85

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
           E   R   ++   Y     I++ + I   ++ +++  KW   +  +   +  ++LVGNK 
Sbjct: 86  E---RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKL 141

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           D                  +  ++G   AQ+I    + E SAK    V E+F       L
Sbjct: 142 DCET------------DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

Query: 180 Q 180
           +
Sbjct: 190 K 190

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  139 bits (353), Expect = 3e-42
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 26/189 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQ--FPEVYVPTVFENYVADIEVDSKQVELAL---WDTA 61
           ++V++G+   GK+ L  +F+               + Y   + VD +   + L   W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKK 119
           G+ ++  L        D  L+ +SI    S E    +   +++      ++PIILVGNK 
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 155

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           DL                 V   EGRA A   +   ++E SA  +  V+E+FE   R   
Sbjct: 156 DLVR------------CREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVR--- 199

Query: 180 QVKKKKKGR 188
           QV+ ++  +
Sbjct: 200 QVRLRRDSK 208

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  139 bits (353), Expect = 4e-42
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 24/186 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KLV+VGD + GKTC++  F    F E    T+  +  +  +E+  K+V+L +WDTAGQE 
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE- 89

Query: 66  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
             R R ++   Y   +  ++ + I    S  ++   W  +V+ +   N+  +L+GNK DL
Sbjct: 90  --RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDL 146

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
                            V   E +++A+  +    +E SAK    V E F        ++
Sbjct: 147 SE------------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT---EL 191

Query: 182 KKKKKG 187
             +  G
Sbjct: 192 IMRHGG 197

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  138 bits (349), Expect = 6e-42
 Identities = 47/178 (26%), Positives = 92/178 (51%), Gaps = 20/178 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K+V++G+G  GKT L++ + +++F + ++ T+   F      + +  K+V LA+WDTAGQ
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKK--LNIGGKRVNLAIWDTAGQ 65

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E +  L P+ Y D++  ++ + I   DS + + + W  E++      + + +VGNK DL 
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE 124

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                        +  V  +E  + A+ + A  +   SAK  +G+ E+F    +  ++
Sbjct: 125 K------------ERHVSIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 169

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  137 bits (347), Expect = 1e-41
 Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 24/187 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSK-QVELALWDTAG 62
           K+V++GDGA GKT L   F+++ F + Y  T+   F      I +     V L +WD  G
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRR--ITLPGNLNVTLQIWDIGG 65

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNK 118
           Q    ++          +L+ + I +  S EN+ E W   VK           + LVGNK
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNK 124

Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
            DL +          M+   +KPE+     Q+ N F+    SAK+ + V   F+      
Sbjct: 125 IDLEH----------MRT--IKPEKHLRFCQE-NGFSSHFVSAKTGDSVFLCFQKVAAEI 171

Query: 179 LQVKKKK 185
           L +K  K
Sbjct: 172 LGIKLNK 178

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  137 bits (347), Expect = 1e-41
 Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 20/183 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KLV++GD   GK+ L++ F KDQF E    T+   F +    + V+   V+  +WDTAGQ
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQT--LAVNDATVKFEIWDTAGQ 71

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E Y  L P+ Y      ++ F + +  S E   +KW  E++    PN+ + L GNK DL 
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLL 130

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
           +               V  E+ +  AQ+   F ++E SAK+   V+E+F    R   +V+
Sbjct: 131 D------------ARKVTAEDAQTYAQENGLF-FMETSAKTATNVKEIFYEIARRLPRVQ 177

Query: 183 KKK 185
             +
Sbjct: 178 PTE 180

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  137 bits (347), Expect = 2e-41
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 23/186 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDS-KQVELALWDTAG 62
           K++I+GD   GKT L+  +  D++ + Y  T+   F     ++ VD  K   + +WDTAG
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT--KEVTVDGDKVATMQVWDTAG 67

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGN 117
           QE +  L    Y   D  ++ + + +  S ENI + W  E             P +++GN
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGN 126

Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           K D               ++ V  +  + +A+ +        SAK+   V   FE   R+
Sbjct: 127 KIDAEES-----------KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175

Query: 178 ALQVKK 183
           ALQ  +
Sbjct: 176 ALQQNQ 181

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  137 bits (347), Expect = 2e-41
 Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 16/181 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++G+   GKT LL  F++++F      T+  E     + + +  V+  +WDTAG E 
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ F +    +   + E+W  E+  H    + ++LVGNK DL   
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ- 144

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                         V  EE R  A+  N   +LE SA     V   FET  +       K
Sbjct: 145 -----------AREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192

Query: 185 K 185
           +
Sbjct: 193 Q 193

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  137 bits (347), Expect = 3e-41
 Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 16/182 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++G+   GKTCL+  F++  FP     T+  +  +  +E++ ++V+L +WDTAGQE 
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  +    Y   + +++ + I   +S   +  +W  E++ +    V  +LVGNK DL   
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE- 145

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  +     ++      YLE SAK  + V ++F       +   ++
Sbjct: 146 -----------RREVSQQRAEEFSEA-QDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193

Query: 185 KK 186
             
Sbjct: 194 NT 195

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  137 bits (348), Expect = 3e-41
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 17/177 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVAD-IEVDSKQVELALWDTAGQE 64
           K+ ++GDG  GKT  +      +F + Y  TV   N+    ++     ++  +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRN 123
               L+ + Y      ++ F + S  + +N+  +W  E +       PI++  NK D++N
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                      +Q+ +  +    + +  N + Y E SAK+       F    R    
Sbjct: 132 -----------RQK-ISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFTG 175

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  136 bits (345), Expect = 4e-41
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 20/183 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K+ ++GD   GK+ ++  F +D F     PT+   F      +   ++  +  +WDTAGQ
Sbjct: 25  KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKT--VPCGNELHKFLIWDTAGQ 82

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E +  L P+ Y  +   ++ + I   DS   + +KW  E+K H   N+ + + GNK DL 
Sbjct: 83  ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLS 141

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
           +               V  ++ +  A+ I A   +E SAK+   + E+F+  +R    + 
Sbjct: 142 D------------IREVPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISRQIPPLD 188

Query: 183 KKK 185
             +
Sbjct: 189 PHE 191

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  136 bits (344), Expect = 5e-41
 Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 20/184 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K +I+GD   GK+CLL+ F+  +F  V+  T+   F   +  + +D KQ++L +WDTAGQ
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--VNIDGKQIKLQIWDTAGQ 80

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLR 122
           E +  +    Y      L+ + I   ++  ++   W  +  +H   N+ I+L+GNK DL 
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLE 139

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
           +            +  VK EEG A A++ +   ++E SAK+   V E F    +   +  
Sbjct: 140 S------------RRDVKREEGEAFARE-HGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

Query: 183 KKKK 186
           ++  
Sbjct: 187 QQGL 190

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  135 bits (342), Expect = 6e-41
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 20/175 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KLV++G+ A GK+ L++ F K QF E    T+   F      + +D   V+  +WDTAGQ
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT--VCLDDTTVKFEIWDTAGQ 65

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E Y  L P+ Y      ++ + I + +S     + W  E++    PN+ I L GNK DL 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLA 124

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           N            +  V  +E ++ A   +   ++E SAK+   V E+F    + 
Sbjct: 125 N------------KRAVDFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKK 166

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  135 bits (343), Expect = 8e-41
 Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 22/185 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE- 65

Query: 66  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
             R R ++   Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVGNK DL
Sbjct: 66  --RYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDL 122

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
           R+               V  +E RA A+K N  +++E SA     V E F+       ++
Sbjct: 123 RH------------LRAVPTDEARAFAEK-NNLSFIETSALDSTNVEEAFKNILTEIYRI 169

Query: 182 KKKKK 186
             +K+
Sbjct: 170 VSQKQ 174

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  135 bits (342), Expect = 1e-40
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 26/185 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KL+++G+ + GKT  L  ++ D F   +V TV   F+     +    K+++L +WDTAGQ
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKT--VYRHDKRIKLQIWDTAGQ 81

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
           E   R R ++   Y      L+ + I + +S   + + W  ++K +   N  +ILVGNK 
Sbjct: 82  E---RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKC 137

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           DL +            +  V  E+GR +A  +  F + E SAK    V++VFE       
Sbjct: 138 DLED------------ERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVIC 184

Query: 180 QVKKK 184
           +   +
Sbjct: 185 EKMNE 189

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  135 bits (342), Expect = 1e-40
 Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 22/185 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K +++G+   GK+CLL  F + +F +    T+  E     I V  K V+L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE- 70

Query: 66  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
             R R ++   Y      L+ + I S ++   +   W  + +     N+ IIL GNKKDL
Sbjct: 71  --RFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDL 127

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
                            V   E    AQ+ N   +LE SA + E V E F    R  L  
Sbjct: 128 DA------------DREVTFLEASRFAQE-NELMFLETSALTGENVEEAFVQCARKILNK 174

Query: 182 KKKKK 186
            +  +
Sbjct: 175 IESGE 179

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  135 bits (342), Expect = 1e-40
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 22/175 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE- 89

Query: 66  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
             R R ++   Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVGNK DL
Sbjct: 90  --RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDL 146

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
           R+               V  +E RA A+K N  +++E SA     V   F+T   
Sbjct: 147 RH------------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILT 188

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  134 bits (340), Expect = 1e-40
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 16/176 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K +I+GD   GK+CLL  F++ +F      T+  E     IEV  ++++L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
           +  +    Y      LM + I    +  ++   W  + ++   PN  IIL+GNK DL   
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEA- 134

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                      Q  V  EE +  A++ N   +LE SAK+ E V + F  A +   Q
Sbjct: 135 -----------QRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  135 bits (342), Expect = 2e-40
 Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K +++G    GK+CLL  F +++F +    T+  E     + V  K V+L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  +    Y      L+ + I S ++  ++   W  + +    PN+ +IL GNKKDL   
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDP- 144

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V   E    AQ+ N   +LE SA + E V E F    R  L     
Sbjct: 145 -----------EREVTFLEASRFAQE-NELMFLETSALTGENVEEAFLKCARTILNKIDS 192

Query: 185 KK 186
            +
Sbjct: 193 GE 194

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  134 bits (340), Expect = 2e-40
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 26/187 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KL+++GD   GKTC+L  FS+D F   ++ T+   F+     IE+D K+++L +WDTAGQ
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRT--IELDGKRIKLQIWDTAGQ 67

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
           E   R R ++   Y     I++ + I +  S +NI   W   ++ H   +V  +++GNK 
Sbjct: 68  E---RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKC 123

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           D+ +            +  V  E G  +A       ++E SAK+   V   F T  R   
Sbjct: 124 DVND------------KRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK 170

Query: 180 QVKKKKK 186
               K  
Sbjct: 171 AKMDKNW 177

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  135 bits (342), Expect = 2e-40
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 20/185 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KLV +G+ + GKT L+  F  D F   Y  T+   F +    + ++ + V L LWDTAG 
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT--MYLEDRTVRLQLWDTAGL 75

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E +  L P    D+ V ++ + I + +S +    KW  +V+     +V I+LVGNK DL 
Sbjct: 76  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLA 134

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
           +            +  V  EEG   A+++N   ++E SAK+   V+++F     A   ++
Sbjct: 135 D------------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGME 181

Query: 183 KKKKG 187
             +  
Sbjct: 182 STQDR 186

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  134 bits (340), Expect = 2e-40
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 20/175 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KLV +G+ + GKT L+  F  D F   Y  T+   F +    + ++ + V L LWDTAGQ
Sbjct: 16  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT--MYLEDRTVRLQLWDTAGQ 73

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E +  L P    D+ V ++ + I + +S      KW  +V+     +V I+LVGNK DL 
Sbjct: 74  ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLS 132

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           +            +  V  EEG   A+++N   ++E SAK+   V+++F     A
Sbjct: 133 D------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAA 174

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  133 bits (338), Expect = 2e-40
 Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 20/178 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K+ ++GD   GK+ ++  F +D F     PT+   F      ++  ++  +  +WDTAG 
Sbjct: 8   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKT--VQYQNELHKFLIWDTAGL 65

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E +  L P+ Y  +   ++ + I   ++   + + W  E++ H  P++ + + GNK DL 
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLT 124

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           +               V   + +  A  I+A  ++E SAK+   + E+F   +R    
Sbjct: 125 D------------VREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISRRIPS 169

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  134 bits (340), Expect = 3e-40
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 26/186 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K++I+G+ + GKT  L  ++ D F   +V TV   F+     I  + K+++L +WDTAG 
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKT--IYRNDKRIKLQIWDTAGL 67

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
           E   R R ++   Y      ++ + I + +S   + + W+ ++K +   N  ++LVGNK 
Sbjct: 68  E---RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKC 123

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           D+ +            +  V  E GR +A  +  F + E SAK    V++ FE       
Sbjct: 124 DMED------------ERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC 170

Query: 180 QVKKKK 185
           +   + 
Sbjct: 171 EKMSES 176

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  134 bits (339), Expect = 3e-40
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 26/181 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KL+I+G+ + GKT  L  ++ D F   +V TV   F+     +    K+V+L +WDTAGQ
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKT--VYRHEKRVKLQIWDTAGQ 82

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
           E   R R ++   Y      ++ + I + +S   + + W  ++K +   N  +ILVGNK 
Sbjct: 83  E---RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKC 138

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           D+              +  V  E+G+ +A+++  F + E SAK    VR+ FE    A  
Sbjct: 139 DMEE------------ERVVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAIC 185

Query: 180 Q 180
            
Sbjct: 186 D 186

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  134 bits (340), Expect = 3e-40
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 24/187 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K++I+GD   GKT L+  +   +F   Y  T+   F     ++ VD + V + +WDTAGQ
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--KEVMVDDRLVTMQIWDTAGQ 67

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
           E +  L    Y   D  ++ F + +P++ + + + W  E           N P +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126

Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
            DL N               V  +  +A     N   Y E SAK    V + F+T  R A
Sbjct: 127 IDLEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173

Query: 179 LQVKKKK 185
           L+ + + 
Sbjct: 174 LKQETEV 180

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  133 bits (338), Expect = 5e-40
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 26/189 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELAL---WDTA 61
           ++V++G+   GK+ L  +F+               + Y   + VD +   + L   W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKK 119
           G+ ++  L        D  L+ +SI    S E   E    +++      ++PIILVGNK 
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKS 124

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           DL                 V   EGRA A   +   ++E SA  +  V+E+FE   R   
Sbjct: 125 DLVR------------XREVSVSEGRAXAVVFD-XKFIETSAAVQHNVKELFEGIVR--- 168

Query: 180 QVKKKKKGR 188
           QV+ ++  +
Sbjct: 169 QVRLRRDSK 177

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  133 bits (336), Expect = 1e-39
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 19/180 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  +  +  IE+D K ++L +WDTAGQE 
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL   
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT- 152

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      ++ V     +  A  +    +LE SAK+   V + F T      ++KK+
Sbjct: 153 -----------KKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAA---EIKKR 197

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  132 bits (335), Expect = 1e-39
 Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 18/183 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K++I+G+   GK+ LL+ F+ D F      T+  +  V  I VD  + +LA+WDTAGQE 
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRN 123
           +  L P  Y     +++ + +   D+   + + W  E++ +C   ++  +LVGNK D   
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK-- 133

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                      +   V   EG   A+K ++  ++E SAK+ +GV+  FE      +Q   
Sbjct: 134 -----------ENREVDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 181

Query: 184 KKK 186
             +
Sbjct: 182 LWE 184

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  131 bits (333), Expect = 2e-39
 Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 27/187 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV---FENYVADIEVDSKQVELALWDTAG 62
           K+++VGD   GKTCLL+ F    F    ++ TV   F N V  ++VD  +V+L +WDTAG
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKV--LDVDGVKVKLQMWDTAG 69

Query: 63  QEDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 118
           QE   R R ++   Y D   +L+ + + +  S +NI + W  E+  +   +V ++L+GNK
Sbjct: 70  QE---RFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNK 125

Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
            D  +            +  VK E+G  +A++     ++E SAK+   V   F    +  
Sbjct: 126 VDSAH------------ERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKEL 172

Query: 179 LQVKKKK 185
            +   K 
Sbjct: 173 KRRSMKA 179

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  131 bits (332), Expect = 2e-39
 Identities = 51/181 (28%), Positives = 95/181 (52%), Gaps = 27/181 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K++++GD   GK+CLL+ F +D+F   ++ T+   F+     ++++ K+V+L +WDTAGQ
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT--VDINGKKVKLQIWDTAGQ 62

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
           E   R R ++   Y     I++ + I    +  NI ++W   V  H      ++LVGNK 
Sbjct: 63  E---RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 118

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           D+             +   V  ++G A+A+++    ++E SAK+ + V E+F T  +   
Sbjct: 119 DM-------------ETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ 164

Query: 180 Q 180
           +
Sbjct: 165 E 165

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  132 bits (335), Expect = 2e-39
 Identities = 50/184 (27%), Positives = 94/184 (51%), Gaps = 21/184 (11%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K++++GD   GK+CLL+ F +D+F   ++ T+   F+     ++++ K+V+L LWDTAGQ
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT--VDINGKKVKLQLWDTAGQ 79

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E +  +    Y     I++ + +    +  NI ++W   V  H      ++LVGNK D+ 
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM- 137

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
                       +   V  ++G A+A+++    ++E SAK+ + V E+F T  +   +  
Sbjct: 138 ------------ETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

Query: 183 KKKK 186
              K
Sbjct: 185 DSNK 188

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  131 bits (333), Expect = 3e-39
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GK+CLL+ F+ D + E Y+ T+  +  +  IE+D K ++L +WDTAGQE 
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVGNK DL   
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT- 135

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      ++ V     +  A  +    +LE SAK+   V + F T      +    
Sbjct: 136 -----------KKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183

Query: 185 K 185
            
Sbjct: 184 G 184

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  132 bits (333), Expect = 5e-39
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F+K++F      T+  E     +E++ K+++  +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
           Y  +    Y      L+ + I    S EN    W  E++ +   NV + L+GNK DL + 
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAH- 132

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                         V  EE +  AQ+ N   + E SA + E V + FE       Q   K
Sbjct: 133 -----------LRAVPTEESKTFAQE-NQLLFTETSALNSENVDKAFEELINTIYQKVSK 180

Query: 185 KK 186
            +
Sbjct: 181 HQ 182

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  131 bits (331), Expect = 7e-39
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 26/187 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KL+++G+   GK+CLL+ FS D +   Y+ T+   F+  +  +E+D K V+L +WDTAGQ
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK--IKTVELDGKTVKLQIWDTAGQ 67

Query: 64  EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
           E   R R ++   Y  +  I++ + +   +S   + + W  E+  +    V  +LVGNK 
Sbjct: 68  E---RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKC 123

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           DL++            +  V+ +  +  A   N   +LE SA     V + F T  R   
Sbjct: 124 DLKD------------KRVVEYDVAKEFADA-NKMPFLETSALDSTNVEDAFLTMARQIK 170

Query: 180 QVKKKKK 186
           +   ++ 
Sbjct: 171 ESMSQQN 177

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  128 bits (323), Expect = 9e-38
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 33/195 (16%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-----------FENYVADIEVDSKQVEL 55
           K + +GD   GKT +L  ++  +F   ++ TV             N         +++ L
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 56  ALWDTAGQEDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNV 110
            LWDTAG E   R R L+   + D    L+ F + +  S  N+   W  +++      N 
Sbjct: 73  QLWDTAGLE---RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENP 128

Query: 111 PIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREV 170
            I+L GNK DL +            Q  VK EE R +A+K     Y E SA +   +   
Sbjct: 129 DIVLCGNKSDLED------------QRAVKEEEARELAEKYG-IPYFETSAANGTNISHA 175

Query: 171 FETATRAALQVKKKK 185
            E      ++  ++ 
Sbjct: 176 IEMLLDLIMKRMERS 190

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  126 bits (319), Expect = 2e-37
 Identities = 33/186 (17%), Positives = 72/186 (38%), Gaps = 25/186 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +L ++GD   GK+ L+  F    + +V   T  E Y  ++ VD +   + + + AG  D 
Sbjct: 9   RLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 67

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVG--NKKD 120
                      D ++  FS++  +S + +  +   ++          + + LVG  ++  
Sbjct: 68  -----KFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRIS 121

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
             +               V     RA+   +   +Y E  A     V  VF+   +  + 
Sbjct: 122 ASS------------PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169

Query: 181 VKKKKK 186
           ++K+++
Sbjct: 170 LRKQQQ 175

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  126 bits (319), Expect = 4e-37
 Identities = 38/189 (20%), Positives = 73/189 (38%), Gaps = 23/189 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSK--DQFPEVYVPTV-FENYVADIEVDSKQVELALW--DTA 61
           K+ +VG+   GK+ L+ +F+    +F + Y  T   E  VA + +    V + L+  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK----HFCPNVPIILVGN 117
           G + Y       +      ++ F + S +S E+  + W   +K         +  +LV N
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140

Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK-SKEGVREVFETATR 176
           K DL             ++  V+ +  +  A       + + SA    +     F +   
Sbjct: 141 KTDLPP-----------QRHQVRLDMAQDWATTNTLD-FFDVSANPPGKDADAPFLSIAT 188

Query: 177 AALQVKKKK 185
              +  + K
Sbjct: 189 TFYRNYEDK 197

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  126 bits (319), Expect = 6e-37
 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 37/197 (18%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSK----------QV 53
           KL+ +GD   GKT  L  ++ ++F   ++ TV   F      +  +++          +V
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKR--VVYNAQGPNGSSGKAFKV 84

Query: 54  ELALWDTAGQEDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CP 108
            L LWDTAGQE   R R L+   + D    L+ F + S  S  N+   W  +++    C 
Sbjct: 85  HLQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCE 140

Query: 109 NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           N  I+L+GNK DL +            Q  V   + R +A K     Y E SA + + V 
Sbjct: 141 NPDIVLIGNKADLPD------------QREVNERQARELADKYG-IPYFETSAATGQNVE 187

Query: 169 EVFETATRAALQVKKKK 185
           +  ET     ++  ++ 
Sbjct: 188 KAVETLLDLIMKRMEQC 204

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  125 bits (315), Expect = 9e-37
 Identities = 36/192 (18%), Positives = 80/192 (41%), Gaps = 23/192 (11%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTV---FENYVADIEVDSKQ---VELA 56
           R KL+IVG+   GKT LL    K +  ++     TV    +++   I++  K+   + L 
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWP--IQIRDKRKRDLVLN 59

Query: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 116
           +WD AG+E++    P       + L  + +    +  +  + W   +K    + P+ILVG
Sbjct: 60  VWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVG 119

Query: 117 NKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREVFE 172
              D+          ++ +++    +  + +  K         +   + +  + + ++ +
Sbjct: 120 THLDV---------SDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRK 170

Query: 173 TATRAALQVKKK 184
           T    +L  K +
Sbjct: 171 TIINESLNFKIR 182

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  122 bits (309), Expect = 9e-36
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 31/182 (17%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           K++++GD   GKTCL   F   +FP+    T+   F      +++D +++++ LWDTAGQ
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA--VDIDGERIKIQLWDTAGQ 79

Query: 64  EDYDRLR----PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGN 117
           E   R R       Y +   ++  + + +  S  ++P  W  E K      ++P ILVGN
Sbjct: 80  E---RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGN 135

Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK---EGVREVFETA 174
           K DLR+               V  +  +  A   +     E SAK+    + V  +F T 
Sbjct: 136 KCDLRS------------AIQVPTDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTL 182

Query: 175 TR 176
             
Sbjct: 183 AH 184

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  120 bits (303), Expect = 4e-35
 Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 17/175 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
           KLV++G+ A GK+ +++ F  + F E   PT+   F      + ++   V+  +WDTAGQ
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQR--VTINEHTVKFEIWDTAGQ 62

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
           E +  L P  Y +    L+ + +  P S       W  E+      ++ I LVGNK D  
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXL 121

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
            +           +  V  EEG  +A++     + E SAK+ E V +VF      
Sbjct: 122 QEGG---------ERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGEK 166

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  115 bits (289), Expect = 1e-32
 Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 54/212 (25%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---------------------------- 38
           K V++G+ + GK+ +++  +KD F E    T+                            
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68

Query: 39  ----------FENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 88
                       N   +   +   ++  +WDTAGQE Y  + PL Y      ++ F I +
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128

Query: 89  PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA 148
            ++L+   + W  ++K    N  IILV NK D               +  V   E +  A
Sbjct: 129 SNTLDRA-KTWVNQLKIS-SNYIIILVANKIDKN-------------KFQVDILEVQKYA 173

Query: 149 QKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           Q  N   +++ SAK+   ++ +F        +
Sbjct: 174 QDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYK 204

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  119 bits (300), Expect = 5e-32
 Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 26/189 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPT---------VFENYVADIEVDSKQVELAL 57
           K+ ++GDG  GKT LL     + F      T                + + + K+     
Sbjct: 43  KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102

Query: 58  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN 117
           WD  GQE            + V ++     +  +       W   ++ +    P+I+V N
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMN 158

Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           K D                  ++ ++       I    +   S K+ +GV  + ++   A
Sbjct: 159 KIDENP------------SYNIEQKKINERFPAIENR-FHRISCKNGDGVESIAKSLKSA 205

Query: 178 ALQVKKKKK 186
            L       
Sbjct: 206 VLHPDSIYG 214

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 76.2 bits (187), Expect = 3e-17
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 31/181 (17%)

Query: 17  GKTCLLIV-----FSKDQFPEVYVPTVFENY----VADIEVDSKQVELALWDTAGQEDY- 66
              C + +     F  DQ  + +  T  + Y     A     ++++     D  G E   
Sbjct: 92  CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDF 151

Query: 67  -DRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122
             +  P      D  L+   +      + ++  +  +           PI++V  K D  
Sbjct: 152 EQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
                        +  ++     A+++K      +E SA+S   V   F T  +    + 
Sbjct: 212 V------------ERYIRDAHTFALSKK--NLQVVETSARSNVNVDLAFSTLVQ---LID 254

Query: 183 K 183
           K
Sbjct: 255 K 255

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 75.2 bits (185), Expect = 3e-17
 Identities = 47/212 (22%), Positives = 70/212 (33%), Gaps = 44/212 (20%)

Query: 1   MAAIRK-------KLVIVGDGACGKTCLL----------IVFSKDQFPEVYVPTVFENY- 42
           M+ I         K+V  G G  GKT  L                        T+F ++ 
Sbjct: 3   MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62

Query: 43  -VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS--------PDSLE 93
            +   EV   +    L+   GQ  Y+  R L     D I+  F  DS         +S+ 
Sbjct: 63  PLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIV--FVADSAPNRLRANAESMR 120

Query: 94  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153
           N+ E           +VPI++  NK+DL +               +  E  RA+      
Sbjct: 121 NMRENLAEYGLTLD-DVPIVIQVNKRDLPD--------------ALPVEMVRAVVDPEGK 165

Query: 154 FAYLECSAKSKEGVREVFETATRAALQVKKKK 185
           F  LE  A   +GV E  +  +R  L      
Sbjct: 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAGG 197

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 52/200 (26%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           K++IVG D A GKT +L  FS ++      PT+  N    +E +        +WD  GQ 
Sbjct: 18  KVIIVGLDNA-GKTTILYQFSMNEVVHT-SPTIGSN----VEEIVINNTRFLMWDIGGQ- 70

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
             + LR      Y +T+ ++    +DS D  E I              +++       ++
Sbjct: 71  --ESLRSSWNTYYTNTEFVI--VVVDSTD-RERISVTREELYKMLAHEDLR----KAGLL 121

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           +  NK+D++       I +   L  +K                       C A + EG+ 
Sbjct: 122 IFANKQDVKECMTVAEISQFLKLTSIKDHQWH---------------IQACCALTGEGLC 166

Query: 169 EVFETATRAALQVKKKKKGR 188
           +  E       ++K + +  
Sbjct: 167 QGLEWMMS---RLKIRLEHH 183

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 66.1 bits (162), Expect = 5e-14
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 49/184 (26%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           K++IVG D A GKT +L  FS ++      PT+  N    +E +        +WD  GQ 
Sbjct: 23  KVIIVGLDNA-GKTTILYQFSMNEVVHT-SPTIGSN----VEEIVINNTRFLMWDIGGQ- 75

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
             + LR      Y +T+ ++    +DS D  E I              +++       ++
Sbjct: 76  --ESLRSSWNTYYTNTEFVI--VVVDSTD-RERISVTREELYKMLAHEDLR----KAGLL 126

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           +  NK+D++       I +   L  +K                       C A + EG+ 
Sbjct: 127 IFANKQDVKECMTVAEISQFLKLTSIKDHQWH---------------IQACCALTGEGLC 171

Query: 169 EVFE 172
           +  E
Sbjct: 172 QGLE 175

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 52/197 (26%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           +++I+G DGA GKT +L      +      PT+  N    +E +  K ++L +WD  GQ 
Sbjct: 20  RILILGLDGA-GKTTILYRLQIGEVVTT-KPTIGFN----VETLSYKNLKLNVWDLGGQ- 72

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
               +RP     Y DT  ++  F +DS D  + +              E++    +  ++
Sbjct: 73  --TSIRPYWRCYYADTAAVI--FVVDSTD-KDRMSTASKELHLMLQEEELQ----DAALL 123

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           +  NK+D       + + +   L ++K                  ++ +  SA   EG+ 
Sbjct: 124 VFANKQDQPGALSASEVSKELNLVELKDRS---------------WSIVASSAIKGEGIT 168

Query: 169 EVFETATRAALQVKKKK 185
           E  +        +K+++
Sbjct: 169 EGLDWLID---VIKEEQ 182

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 52/199 (26%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           +++++G D A GKT +L            VPTV  N    +E +  K +   +WD  GQ 
Sbjct: 24  RVLMLGLDNA-GKTSILYRLHLGDVVTT-VPTVGVN----LETLQYKNISFEVWDLGGQ- 76

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
               +RP     + DTD ++  + +DS D  + +              E++       ++
Sbjct: 77  --TGVRPYWRCYFSDTDAVI--YVVDSTD-RDRMGVAKHELYALLDEDELR----KSLLL 127

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           +  NK+DL +      I E   ++ +                   +  ++ S+K+ +G+ 
Sbjct: 128 IFANKQDLPDAASEAEIAEQLGVSSIMNRT---------------WTIVKSSSKTGDGLV 172

Query: 169 EVFETATRAALQVKKKKKG 187
           E  +       +++++  G
Sbjct: 173 EGMDWLVE---RLREQGLG 188

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 52/197 (26%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           ++++VG D A GKT +L      +     +PT+  N    +E V+ K +   +WD  GQ 
Sbjct: 2   RILMVGLDAA-GKTTILYKLKLGEIVTT-IPTIGFN----VETVEYKNISFTVWDVGGQ- 54

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
             D++RPL    + +T  ++  F +DS D  E + E            E++    +  ++
Sbjct: 55  --DKIRPLWRHYFQNTQGLI--FVVDSND-RERVNEAREELMRMLAEDELR----DAVLL 105

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           +  NK+DL N  +   I +   L+ ++                  +      A S +G+ 
Sbjct: 106 VFANKQDLPNAMNAAEITDKLGLHSLRHRN---------------WYIQATCATSGDGLY 150

Query: 169 EVFETATRAALQVKKKK 185
           E  +  +    Q++ +K
Sbjct: 151 EGLDWLSN---QLRNQK 164

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 39/197 (19%), Positives = 75/197 (38%), Gaps = 52/197 (26%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           +++I+G DGA GKT +L      +     +PT+  N    +E V  K ++  +WD  G  
Sbjct: 9   RILILGLDGA-GKTTILYRLQVGEVVTT-IPTIGFN----VETVTYKNLKFQVWDLGGL- 61

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
               +RP     Y +TD ++  + +DS D  + I    +         E++       ++
Sbjct: 62  --TSIRPYWRCYYSNTDAVI--YVVDSCD-RDRIGISKSELVAMLEEEELR----KAILV 112

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           +  NK+D+      + +     L  +K                  +   + SA    G+ 
Sbjct: 113 VFANKQDMEQAMTSSEMANSLGLPALKD---------------RKWQIFKTSATKGTGLD 157

Query: 169 EVFETATRAALQVKKKK 185
           E  E        +K ++
Sbjct: 158 EAMEWLVE---TLKSRQ 171

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 31/181 (17%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           KLV +G D A GKT LL +   D+  +  VPT+        E +    +    +D  G  
Sbjct: 27  KLVFLGLDNA-GKTTLLHMLKDDRLGQH-VPTLHPT----SEELTIAGMTFTTFDLGGH- 79

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
              + R +     P  + I+  F +D  D  E + E             +     NVPI+
Sbjct: 80  --IQARRVWKNYLPAINGIV--FLVDCAD-HERLLESKEELDSLMTDETIA----NVPIL 130

Query: 114 LVGNKKDLRN--DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
           ++GNK D         ++E+  +  +                     CS   ++G  E F
Sbjct: 131 ILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190

Query: 172 E 172
            
Sbjct: 191 R 191

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 63.1 bits (154), Expect = 6e-13
 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 50/198 (25%)

Query: 7   KLVIVG-DGACGKTCLLIVF-SKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQ 63
            ++ +G D + GKT ++      +   +  +PT+  +    IE   S  +   ++D +GQ
Sbjct: 23  HVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIGFS----IEKFKSSSLSFTVFDMSGQ 77

Query: 64  EDYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPI 112
               R R L    Y +   I+  F IDS D    +             P++KH    +PI
Sbjct: 78  ---GRYRNLWEHYYKEGQAII--FVIDSSD-RLRMVVAKEELDTLLNHPDIKH--RRIPI 129

Query: 113 ILVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGV 167
           +   NK DLR+      + +   L  +K +P               +      A   EG+
Sbjct: 130 LFFANKMDLRDAVTSVKVSQLLCLENIKDKP---------------WHICASDAIKGEGL 174

Query: 168 REVFETATRAALQVKKKK 185
           +E  +       Q++  K
Sbjct: 175 QEGVDWLQD---QIQTVK 189

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 63.0 bits (154), Expect = 8e-13
 Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 42/184 (22%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           KL+ +G D A GKT LL +   D+   +  PT         E +    ++   +D  G  
Sbjct: 25  KLLFLGLDNA-GKTTLLHMLKNDRLATL-QPTWHPT----SEELAIGNIKFTTFDLGGH- 77

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
              + R L    +P+ + I+  F +D+ D  E   E            E+K    +VP +
Sbjct: 78  --IQARRLWKDYFPEVNGIV--FLVDAAD-PERFDEARVELDALFNIAELK----DVPFV 128

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           ++GNK D  N      ++    L           +               CS   + G  
Sbjct: 129 ILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM--------CSVVMRNGYL 180

Query: 169 EVFE 172
           E F+
Sbjct: 181 EAFQ 184

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 49/184 (26%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           +L+++G D A GKT +L  F+ +    +  PT+  N    I+ ++ +  +L +WD  GQ 
Sbjct: 20  RLLMLGLDNA-GKTTILKKFNGEDVDTI-SPTLGFN----IKTLEHRGFKLNIWDVGGQ- 72

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
               LR      +  TD ++  + +DS D  + + +             +        ++
Sbjct: 73  --KSLRSYWRNYFESTDGLI--WVVDSAD-RQRMQDCQRELQSLLVEERLA----GATLL 123

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           +  NK+DL      N I+E   L+ ++    +                  CSA + E + 
Sbjct: 124 IFANKQDLPGALSCNAIQEALELDSIRSHHWR---------------IQGCSAVTGEDLL 168

Query: 169 EVFE 172
              +
Sbjct: 169 PGID 172

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 49/196 (25%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQED 65
           +L +VG    GKT  + V +  QF E  +PTV  N    +  +    V + LWD  GQ  
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN----MRKITKGNVTIKLWDIGGQ-- 77

Query: 66  YDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPIIL 114
             R R +          I+  + +D+ D  E I             P+++     +P+++
Sbjct: 78  -PRFRSMWERYCRGVSAIV--YMVDAAD-QEKIEASKNELHNLLDKPQLQ----GIPVLV 129

Query: 115 VGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
           +GNK+DL    D   + E   L+ ++   +             +      S K K+ +  
Sbjct: 130 LGNKRDLPGALDEKELIEKMNLSAIQDREI----------CCYS-----ISCKEKDNIDI 174

Query: 170 VFETATRAALQVKKKK 185
             +         K ++
Sbjct: 175 TLQ---WLIQHSKSRR 187

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 52/198 (26%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           +++++G D A GKT LL   + +    +  PT   N    I+ V S+  +L +WD  GQ 
Sbjct: 18  RILLLGLDNA-GKTTLLKQLASEDISHI-TPTQGFN----IKSVQSQGFKLNVWDIGGQ- 70

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
              ++RP     + +TD+++  + IDS D  +   E            ++      VP++
Sbjct: 71  --RKIRPYWRSYFENTDILI--YVIDSAD-RKRFEETGQELTELLEEEKLS----CVPVL 121

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           +  NK+DL      + I E   L+ ++    +                  CSA + EGV+
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQ---------------IQSCSALTGEGVQ 166

Query: 169 EVFETATRAALQVKKKKK 186
           +      +    V  KKK
Sbjct: 167 DGMNWVCK---NVNAKKK 181

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 49/184 (26%)

Query: 7   KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
           ++++VG D A GKT +L      +     +PT+  N    +E V+ K +   +WD  GQ 
Sbjct: 31  RILMVGLDAA-GKTTILYKLKLGEIVTT-IPTIGFN----VETVEYKNICFTVWDVGGQ- 83

Query: 65  DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
             D++RPL    + +T  ++  F +DS D  E + E            E++    +  ++
Sbjct: 84  --DKIRPLWRHYFQNTQGLI--FVVDSND-RERVQESADELQKMLQEDELR----DAVLL 134

Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
           +  NK+D+ N    + + +   L  ++                         A    G+ 
Sbjct: 135 VFANKQDMPNAMPVSELTDKLGLQHLRSRTWY---------------VQATCATQGTGLY 179

Query: 169 EVFE 172
           +  +
Sbjct: 180 DGLD 183

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 61.5 bits (149), Expect = 8e-12
 Identities = 27/144 (18%), Positives = 61/144 (42%), Gaps = 12/144 (8%)

Query: 4   IRKKLVIVGDGACGKTCLL-IVFSKDQFPEV--YVPTVFENYVADIEVDSKQVELALWDT 60
           +  KL+++G    GK+ +  I+FS     +      T+     + +      + L LWD 
Sbjct: 2   LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVE-HSHLRFLGN-MTLNLWDC 59

Query: 61  AGQEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPII 113
            GQ+ +      + +   +    V++  F ++S + L++I    K   +++ + P+  I 
Sbjct: 60  GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119

Query: 114 LVGNKKDLRNDPNTIKELNKMKQE 137
           ++ +K DL       +    M + 
Sbjct: 120 VLLHKMDLVQLDKREELFQIMMKN 143

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 33/154 (21%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           +  ++I G    GKT LL + + D      V +           D     + L D  G  
Sbjct: 48  QPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPL----SAADYDGSGVTLVDFPGHV 102

Query: 65  DYDRLRPL-------SYPDTDVILMCFSIDSPDSLENIPEK--------WTPEVKHFCPN 109
              +LR                ++  F +DS    + +              E       
Sbjct: 103 ---KLRYKLSDYLKTRAKFVKGLI--FMVDSTVDPKKLTTTAEFLVDILSITESSCEN-G 156

Query: 110 VPIILVGNKKDLRN--DPNTIK-----ELNKMKQ 136
           + I++  NK +L     P+ IK     E+ K+ +
Sbjct: 157 IDILIACNKSELFTARPPSKIKDALESEIQKVIE 190

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 24/144 (16%), Positives = 56/144 (38%), Gaps = 28/144 (19%)

Query: 5   RKKLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DSKQVELALWDTAG 62
           ++ ++ VG   + GKT L +     Q+ +    ++ ++  A  +V +++   L L D  G
Sbjct: 7   QRAVLFVGLCDS-GKTLLFVRLLTGQYRDT-QTSITDS-SAIYKVNNNRGNSLTLIDLPG 63

Query: 63  QEDYDRLRPLS----YPDTDVILMCFSIDSPDSLENIPEKW---------TPEVKHFCPN 109
            E    LR             ++  F +DS      + +           +  +K+   +
Sbjct: 64  HE---SLRFQLLDRFKSSARAVV--FVVDSAAFQREVKDVAEFLYQVLIDSMALKN---S 115

Query: 110 VPIILVGNKKDLRN--DPNTIKEL 131
             +++  NK+D+        I++ 
Sbjct: 116 PSLLIACNKQDIAMAKSAKLIQQQ 139

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 33/154 (21%)

Query: 5   RKKLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
           +  ++I G   + GKT LL + + D      V +           D     + L D  G 
Sbjct: 12  QPSIIIAGPQNS-GKTSLLTLLTTDSVRPT-VVSQEPL----SAADYDGSGVTLVDFPGH 65

Query: 64  EDYDRLRPL-------SYPDTDVILMCFSIDSPDSLENIPEKW-------TPEVKHFCPN 109
               +LR                ++  F +DS    + +           +         
Sbjct: 66  V---KLRYKLSDYLKTRAKFVKGLI--FMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120

Query: 110 VPIILVGNKKDLRN--DPNTIK-----ELNKMKQ 136
           + I++  NK +L     P+ IK     E+ K+ +
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIE 154

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 5   RKKLVIVGDGACGKTCLL-IVFSKDQFPEV--YVPTVFENYVADIEVDSKQVELALWDTA 61
           + +++++G    GK+ +  +VF K    E      T       DI   S  V   +WD  
Sbjct: 20  KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY-KDDISNSSF-VNFQIWDFP 77

Query: 62  GQEDYDRL---RPLSYPDTDVILMCFSIDSPDSLENIPEK---WTPEVKHFCPNVPIILV 115
           GQ D+        + +  T  ++  + ID+ D       +      +     P++   + 
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALI--YVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135

Query: 116 GNKKDLRND---PNTIKELNKMKQE 137
            +K D  +D     T +++++   +
Sbjct: 136 IHKVDGLSDDHKIETQRDIHQRAND 160

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 50/196 (25%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQED 65
           ++++VG  A GKT +L      +     +PT+  N    +E V+ K +   +WD  GQ  
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN----VETVEYKNISFTVWDVGGQ-- 219

Query: 66  YDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPIIL 114
            D++RPL    + +T  ++  F +DS D  E + E            E++    +  +++
Sbjct: 220 -DKIRPLWRHYFQNTQGLI--FVVDSND-RERVNEAREELMRMLAEDELR----DAVLLV 271

Query: 115 VGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
             NK+DL N  +   I +   L+ ++                         A S +G+ E
Sbjct: 272 FANKQDLPNAMNAAEITDKLGLHSLRHRNWY---------------IQATCATSGDGLYE 316

Query: 170 VFETATRAALQVKKKK 185
             +  +    Q++ +K
Sbjct: 317 GLDWLSN---QLRNQK 329

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 31/211 (14%), Positives = 53/211 (25%), Gaps = 78/211 (36%)

Query: 1   MAAIRKKL---------VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSK 51
              +R+ L         +I G    GKT + +        +V             +V  K
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--------DV---------CLSYKVQCK 179

Query: 52  QVELALWDTAGQ--EDYDRLRPLSYPDTDVILMCFSIDS-----PDSLENIP---EKWTP 101
                 W            L  L         + + ID       D   NI         
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 102 EVKHFC-----PNVPIIL--VGNKKDL-------------RN-------DPNTIKELN-K 133
           E++         N  ++L  V N K               R           T   ++  
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 134 MKQEPVKPEEGRAMAQKINAFA-YLECSAKS 163
                + P+E +++         YL+C  + 
Sbjct: 293 HHSMTLTPDEVKSL------LLKYLDCRPQD 317

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 61/210 (29%)

Query: 18  KTCLLIVFSKDQFPEVYVPTVFENY--------------VADIEVDSKQVELALWDTAGQ 63
           + CLL++        V     +  +              V D    +    ++L      
Sbjct: 244 ENCLLVL---L---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL------ 291

Query: 64  EDYDRLRPLSYPDT-DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
                   L+  +   ++L        D    +P     EV    P   + ++   + +R
Sbjct: 292 --DHHSMTLTPDEVKSLLLKYLDCRPQD----LP----REVLTTNPRR-LSIIA--ESIR 338

Query: 123 NDPNTI---KELNKMKQEPV--------KPEEGRAMAQKINAF--------AYLEC--SA 161
           +   T    K +N  K   +        +P E R M  +++ F          L      
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 162 KSKEGVREVFETATRAALQVKKKKKGRCRL 191
             K  V  V     + +L  K+ K+    +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
           +D+  +         +++    I   +          P +  F  + PI+LVGNK DL  
Sbjct: 59  DDFLSMLHRIGESKALVVNIVDIFDFNGSFI------PGLPRFAADNPILLVGNKADLLP 112

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                 +L +  +         A    +        SA    G+ +V E
Sbjct: 113 RSVKYPKLLRWMRR-------MAEELGLCPVDVCLVSAAKGIGMAKVME 154

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 18/92 (19%)

Query: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQE 137
           D+IL     D      +       E+K   P    + V NK D   + + +         
Sbjct: 314 DLILYLL--DLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIA---- 367

Query: 138 PVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
                              +  SA + +G+  
Sbjct: 368 ------------DGTGTEVIGISALNGDGIDT 387

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 19/128 (14%)

Query: 8   LVIVGDGACGKTCLL-IVFSKDQFPEVYV--PTVFENYVADIEVD--SKQVELALWDTAG 62
           ++++G   CGK+ +  +VF   Q  +      T       +  ++  S  ++LA+ +  G
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTS------NPSLEHFSTLIDLAVMELPG 55

Query: 63  QEDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKH---FCPNVPIILVG 116
           Q +Y      S   +     ++  + IDS D   N        +++     P++ I ++ 
Sbjct: 56  QLNYFEPSYDSERLFKSVGALV--YVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLI 113

Query: 117 NKKDLRND 124
           +K D  ++
Sbjct: 114 HKVDGLSE 121

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 20/126 (15%)

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
            +D+ R+         +++    I   +          P +  F  N  ++LVGNK DL 
Sbjct: 56  DDDFLRILNGIGKSDALVVKIVDIFDFNGSWL------PGLHRFVGNNKVLLVGNKADLI 109

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
                  ++    +         A    +        SA   +G+ E+ +        ++
Sbjct: 110 PKSVKHDKVKHWMRY-------SAKQLGLKPEDVFLISAAKGQGIAELAD-------AIE 155

Query: 183 KKKKGR 188
             + G+
Sbjct: 156 YYRGGK 161

>3evp_A Circular-permutated green fluorescent protein; EGFP, chromophore, luminescence, photoprotein, signaling protein; HET: CRO; 1.45A {Aequorea victoria} Length = 243

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 94  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153
           NI +       H+  N PI   G+   L  D + +   +K+ ++P +  +   + +    
Sbjct: 26  NIEDGGVQLAYHYQQNTPI---GDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLE---- 78

Query: 154 FAYLECSAKSKEGVREVFETATRAALQVKKKK 185
                 +A    G+ E+++  T  ++  K ++
Sbjct: 79  ---FVTAAGITLGMDELYKGGTGGSMVSKGEE 107

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 23/91 (25%)

Query: 78  DVILMCFSIDSPDSLENIPEK-WTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQ 136
           D +L  F +D   +    P + W   +      +PI +V NK D+  +   + E      
Sbjct: 85  DRVL--FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSE------ 136

Query: 137 EPVKPEEGRAMAQKINAFAYLECSAKSKEGV 167
                         +N  A +  SA++ EGV
Sbjct: 137 --------------VNGHALIRLSARTGEGV 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.98
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.9
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.89
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.85
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.85
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.85
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.85
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.84
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.84
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.84
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.83
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.81
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.81
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.8
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.79
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.79
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.79
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.78
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.76
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.74
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.73
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.68
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.67
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.67
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.66
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.65
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.64
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.64
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.59
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.57
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.57
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.53
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.47
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.42
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.36
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.32
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.23
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.14
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.13
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.12
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.06
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.04
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.02
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.01
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.98
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.87
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.86
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.77
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.64
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.63
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.49
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.42
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.41
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.4
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.38
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.3
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.23
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.04
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.94
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.8
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.76
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.76
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.74
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.71
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.67
2xxa_A	433	Signal recognition particle protein; protein trans	97.67
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.67
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.64
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.59
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.58
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.58
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.57
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.56
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.54
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.54
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.53
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.53
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.53
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.53
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.52
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.52
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.51
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.5
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.45
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.44
1via_A	175	Shikimate kinase; structural genomics, transferase	97.44
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.42
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.42
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.41
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.41
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.4
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.39
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.38
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.38
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.37
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.37
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.37
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.36
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.36
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.36
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.35
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.35
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.35
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.33
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.33
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.32
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.32
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.32
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.31
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.31
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.31
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.31
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.31
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.3
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.3
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.3
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.3
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.29
1g6h_A	257	High-affinity branched-chain amino acid transport	97.29
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.29
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.29
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.29
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.28
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.28
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.28
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.27
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.26
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.26
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.26
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.26
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.26
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.25
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.25
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.25
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.25
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.25
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.25
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.24
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.24
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.24
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.23
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.23
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.22
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.22
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.22
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.22
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.22
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.21
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.21
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.21
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.2
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.2
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.19
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.19
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.18
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.18
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.18
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.16
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.16
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.14
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.14
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.13
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.13
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.13
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.13
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.12
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.12
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.12
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.12
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.11
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.11
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.11
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.1
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.09
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.08
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.07
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.07
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.06
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.06
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.06
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.05
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.04
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.04
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.04
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.04
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.03
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.03
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.02
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.02
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.01
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.01
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.01
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.01
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.0
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.0
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.99
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.98
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.98
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.98
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.98
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.98
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.97
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.97
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.94
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.94
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.94
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.94
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.92
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.91
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.9
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.9
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.88
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.88
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.87
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.87
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.87
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.85
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.85
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.83
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.82
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.81
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.8
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.8
2og2_A	359	Putative signal recognition particle receptor; nuc	96.79
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.79
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.78
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.77
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.77
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.76
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.75
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.74
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.73
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.72
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.71
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.7
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.69
3bos_A	242	Putative DNA replication factor; P-loop containing	96.69
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.68
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.67
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.67
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.66
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.65
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.65
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.64
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.62
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.6
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.58
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.57
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.56
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.53
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.51
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.5
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.5
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.5
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.49
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.49
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.49
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.49
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.46
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.46
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.46
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.46
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.44
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.44
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.43
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.43
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.42
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.42
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.39
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.38
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.37
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.35
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.35
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.33
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.33
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.32
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.31
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.31
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.3
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.27
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.25
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.24
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.21
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.21
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.2
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.2
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.19
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.17
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.17
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.17
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.16
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.15
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.15
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.15
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.11
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.1
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.1
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.09
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.08
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.08
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.08
3co5_A	143	Putative two-component system transcriptional RES	96.08
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.06
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.04
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.03
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.99
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.99
2qgz_A	308	Helicase loader, putative primosome component; str	95.97
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.95
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.95
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.95
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.92
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.92
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.91
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.9
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.89
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.88
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.87
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.87
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.86

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=7.4e-39  Score=223.89  Aligned_cols=164  Identities=31%  Similarity=0.536  Sum_probs=136.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      .+++||+|+|++|+|||||+++|..+.+...+.++.+..+ .+.+..++..+.+.+|||+|+++|...+..+++.+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            4679999999999999999999999999998888877444 666777888999999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|||++++++|+.+. .|+..+.. ..++.|++||+||+|+..            .+.++.+++.++++.++ ++|+++|
T Consensus        91 lv~di~~~~Sf~~i~-~~~~~i~~~~~~~~piilVgNK~Dl~~------------~r~V~~~e~~~~a~~~~-~~~~e~S  156 (216)
T 4dkx_A           91 VVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD------------KRQVSIEEGERKAKELN-VMFIETS  156 (216)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEEEB
T ss_pred             EEeecchhHHHHHHH-HHHHHHHHhcCCCCeEEEEeeccchHh------------cCcccHHHHhhHHHHhC-CeeEEEe
Confidence            999999999999996 66666654 446899999999999876            46789999999999999 5899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhh
Q psy14754        161 AKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~  180 (192)
                      |++|.||+++|+.|.+.+..
T Consensus       157 Aktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          157 AKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             TTTTBSHHHHHHHHHHHC--
T ss_pred             CCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999988764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=5.2e-37  Score=210.31  Aligned_cols=183  Identities=57%  Similarity=0.985  Sum_probs=159.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +..+||+++|++|+|||||+++|.++.+...+.++........+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            46899999999999999999999999887777777766666667788899999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+|++++.++..+...|+..+....++.|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence            99999999999987689988888777999999999999987655555555555677888899999998885699999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhcccc
Q psy14754        163 SKEGVREVFETATRAALQVKKKK  185 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~~~~  185 (192)
                      +|.|++++|+++.+.+.....++
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~~~k  185 (186)
T 1mh1_A          163 TQRGLKTVFDEAIRAVLCPPPVK  185 (186)
T ss_dssp             TCTTHHHHHHHHHHHHSCCCC--
T ss_pred             CccCHHHHHHHHHHHHhcccccC
Confidence            99999999999999998776554

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.5e-36  Score=210.79  Aligned_cols=180  Identities=90%  Similarity=1.404  Sum_probs=158.4

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI   80 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   80 (192)
                      |+..++||+++|++|+|||||++++.+..+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            56788999999999999999999999999887777777766666677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      ++|||++++++++.+...|...+....++.|+++|+||+|+.........+.....+.+..+++..+++.++..+++++|
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999999877899988887789999999999999886665555555666778888999999998866899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhh
Q psy14754        161 AKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~  180 (192)
                      |+++.|++++|++|.+.+.+
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=8.3e-37  Score=214.03  Aligned_cols=182  Identities=51%  Similarity=0.966  Sum_probs=138.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            46799999999999999999999998887777777766666677788889999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++.+++.+...|...+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+++++||+
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  191 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR  191 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence            99999999999987689999888878999999999999988765555555555677888999999999886699999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhccc
Q psy14754        163 SKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +|.|++++|++|.+.+.+.+.+
T Consensus       192 ~g~gi~el~~~l~~~~~~~~~r  213 (214)
T 2j1l_A          192 LHDNVHAVFQEAAEVALSSRGR  213 (214)
T ss_dssp             TTBSHHHHHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999876543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-36  Score=210.81  Aligned_cols=182  Identities=84%  Similarity=1.343  Sum_probs=154.4

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI   80 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   80 (192)
                      |...++||+++|++|+|||||+++|.+..+...+.++........+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (207)
T 2fv8_A           21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (207)
T ss_dssp             GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred             ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence            45678999999999999999999999999887777777666656667788889999999999999999999999999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      ++|+|++++.+++.+...|...+....++.|+++|+||+|+.......+.+.....+.+..+++..++..++..+++++|
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          101 LMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999999877899988887789999999999999876655555666666778888899999988866899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |++|.|++++|++|.+.+...+
T Consensus       181 A~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=209.87  Aligned_cols=182  Identities=45%  Similarity=0.871  Sum_probs=149.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++....+...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   97 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL   97 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence            46899999999999999999999998887777777766666667778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.........+.....+.+..+++..+++.++..+++++||+
T Consensus        98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  177 (201)
T 2q3h_A           98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL  177 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence            99999999999986689998888878999999999999987554444444334566778888999988886699999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhccc
Q psy14754        163 SKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      ++.|++++|+++.+.+.+.+.+
T Consensus       178 ~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          178 TQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHhccccc
Confidence            9999999999999999877554

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-36  Score=208.83  Aligned_cols=177  Identities=53%  Similarity=0.986  Sum_probs=155.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   96 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC   96 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence            57899999999999999999999998887777777666666667777889999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||+++++++..+...|+..+....++.|+++|+||+|+.........+.....+.+..+++.++++.++..+++++||++
T Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  176 (194)
T 2atx_A           97 FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT  176 (194)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCC
Confidence            99999999999876899988888789999999999999876555555555556778888999999988866899999999


Q ss_pred             cCCHHHHHHHHHHHHhh
Q psy14754        164 KEGVREVFETATRAALQ  180 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~  180 (192)
                      +.|++++|++|.+.+..
T Consensus       177 g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          177 QKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=2e-36  Score=207.37  Aligned_cols=178  Identities=51%  Similarity=0.973  Sum_probs=152.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||+++|.+..+...+.++....+...+.++...+.+.+||+||++.|...+..+++.+|++++
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   84 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence            46899999999999999999999999888777777776666666778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++.+++.+...|...+....++.|+++|+||+|+..+......+.....+.+..+++.++++.++..+++++||+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  164 (184)
T 1m7b_A           85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  164 (184)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeec
Confidence            99999999999886689888888778999999999999976543333333334467788889999998886799999999


Q ss_pred             -CcCCHHHHHHHHHHHHhh
Q psy14754        163 -SKEGVREVFETATRAALQ  180 (192)
Q Consensus       163 -~~~gi~~~~~~i~~~~~~  180 (192)
                       ++.|++++|+.+.+.+.+
T Consensus       165 ~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          165 QSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TBHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence             689999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=6e-36  Score=206.61  Aligned_cols=172  Identities=48%  Similarity=0.861  Sum_probs=153.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  100 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL  100 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence            35799999999999999999999999988877788777777777888899999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++.++..+...|...+....++.|+++|+||+|+..+.          .+.+..+++..+++.++..+++++||+
T Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~  170 (194)
T 3reg_A          101 CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG----------SDDVTKQEGDDLCQKLGCVAYIEASSV  170 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT----------TTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC----------CCcccHHHHHHHHHhcCCCEEEEeecC
Confidence            9999999999998778999999888899999999999997632          256778888999999886449999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhccc
Q psy14754        163 SKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +|.|++++|+++.+.+...+..
T Consensus       171 ~~~gi~~l~~~l~~~i~~~~~~  192 (194)
T 3reg_A          171 AKIGLNEVFEKSVDCIFSNKPV  192 (194)
T ss_dssp             TTBSHHHHHHHHHHHHHCSCC-
T ss_pred             CCCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999876543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.1e-36  Score=211.94  Aligned_cols=182  Identities=45%  Similarity=0.829  Sum_probs=155.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL  104 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence            35799999999999999999999999998888888877776667778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++.++......|+..+....++.|+++|+||+|+..+............+.+..+++..+++.++..+++++||+
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence            99999999999955689999998888999999999999987654444444455677889999999999985599999999


Q ss_pred             CcCC-HHHHHHHHHHHHhhhccc
Q psy14754        163 SKEG-VREVFETATRAALQVKKK  184 (192)
Q Consensus       163 ~~~g-i~~~~~~i~~~~~~~~~~  184 (192)
                      ++.| ++++|+++.+.+......
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC----
T ss_pred             CCcccHHHHHHHHHHHHhccCcC
Confidence            9998 999999999999877654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=5e-36  Score=208.62  Aligned_cols=176  Identities=58%  Similarity=1.022  Sum_probs=155.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++.++.+...+.++........+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  107 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  107 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            45799999999999999999999999988777777777767677778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++.+++.+...|...+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+++++||+
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  187 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence            99999999999987689999988888999999999999998776666666666777889999999999997789999999


Q ss_pred             CcCCHHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRAA  178 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~  178 (192)
                      +|+|++++|+++.+.+
T Consensus       188 ~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          188 TQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TCTTHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998765

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=5.3e-36  Score=208.58  Aligned_cols=178  Identities=51%  Similarity=0.973  Sum_probs=152.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+|||||++.|...+..+++.+|++|+
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            35799999999999999999999999988777777776666666777888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++.++..+...|...+....++.|+++|+||+|+..+......+.....+.+..+++..+++.++..+++++||+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  185 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence            99999999999886689888888778999999999999976543333333334567788889999988876699999999


Q ss_pred             -CcCCHHHHHHHHHHHHhh
Q psy14754        163 -SKEGVREVFETATRAALQ  180 (192)
Q Consensus       163 -~~~gi~~~~~~i~~~~~~  180 (192)
                       ++.|++++|+.+.+.+.+
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-35  Score=207.49  Aligned_cols=176  Identities=48%  Similarity=0.892  Sum_probs=148.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ..+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   87 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA   87 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence            57999999999999999999999998887777777766666667788889999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||++++++++.+.+.|+..+....++.|+++|+||+|+.........    ....+..+++..++..++..+++++||++
T Consensus        88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           88 FSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD----HTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT----CSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc----ccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            99999999999876899999888789999999999999764321111    12345778888898888866999999999


Q ss_pred             cCCHHHHHHHHHHHHhhhcc
Q psy14754        164 KEGVREVFETATRAALQVKK  183 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +.|++++|+++.+.+...++
T Consensus       164 g~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC--
T ss_pred             CCCHHHHHHHHHHHHhhhhh
Confidence            99999999999999987653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=206.62  Aligned_cols=176  Identities=28%  Similarity=0.450  Sum_probs=140.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++....+......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL  101 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence            36899999999999999999999999988887777776666666667778899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++++.+++.+. .|...+....  .+.|+++|+||+|+..            .+.+...++..++..++ ++++++|
T Consensus       102 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~S  167 (201)
T 3oes_A          102 VYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSP------------EREVQAVEGKKLAESWG-ATFMESS  167 (201)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEECC
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCcc------------ccccCHHHHHHHHHHhC-CeEEEEe
Confidence            99999999999885 6777766542  4789999999999975            35677788888998888 4999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhccc--cccccccC
Q psy14754        161 AKSKEGVREVFETATRAALQVKKK--KKGRCRLL  192 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~~~--~~~~c~~~  192 (192)
                      |+++.|++++|++|.+.+.+.+..  ++.+|.+|
T Consensus       168 a~~~~~v~~l~~~l~~~i~~~~~~~~~~~~c~l~  201 (201)
T 3oes_A          168 ARENQLTQGIFTKVIQEIARVENSYGQERRCHLM  201 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhhhhhhccccccccC
Confidence            999999999999999999887654  34568876

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.6e-35  Score=202.33  Aligned_cols=176  Identities=51%  Similarity=0.884  Sum_probs=133.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            46899999999999999999999999887776666655544444456667788999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+|++++.+++.+.+.|...+....++.|+++|+||+|+.........  ......+..+++.++++.++..+++++||+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH--C--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccc--cccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999876899999887778999999999999765332111  122344677888889988885699999999


Q ss_pred             CcCCHHHHHHHHHHHHhh
Q psy14754        163 SKEGVREVFETATRAALQ  180 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~  180 (192)
                      ++.|++++|+++.+.+..
T Consensus       164 ~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TCTTHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=7.5e-35  Score=200.04  Aligned_cols=164  Identities=31%  Similarity=0.551  Sum_probs=140.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||+++|.+..+...+.++...........++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999988877777777767777788999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |+|++++.++..+. .|...+....  .+.|+++|+||+|+..             +....+....++..++ ++++++|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S  146 (189)
T 4dsu_A           82 VFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPS-------------RTVDTKQAQDLARSYG-IPFIETS  146 (189)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSS-------------CSSCHHHHHHHHHHHT-CCEEECC
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCcc-------------cccCHHHHHHHHHHcC-CeEEEEe
Confidence            99999999998885 6666665533  4899999999999864             4456777888888888 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhh
Q psy14754        161 AKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |++|.|++++|++|.+.+...
T Consensus       147 a~~g~gi~~l~~~l~~~~~~~  167 (189)
T 4dsu_A          147 AKTRQGVDDAFYTLVREIRKH  167 (189)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.5e-34  Score=196.31  Aligned_cols=168  Identities=32%  Similarity=0.478  Sum_probs=145.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||+++|.++.+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   83 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   83 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence            36899999999999999999999998888877777777777777888889999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++++++++.+. .|...+....  ++.|+++|+||+|+..            .+.+..+++..+++.++ ++++++|
T Consensus        84 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S  149 (181)
T 3t5g_A           84 VYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHM------------ERVISYEEGKALAESWN-AAFLESS  149 (181)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTT------------TCCSCHHHHHHHHHHTT-CEEEECC
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchh------------cceecHHHHHHHHHHhC-CcEEEEe
Confidence            99999999999885 5776665543  4799999999999965            36677888999999998 4999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        161 AKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      |+++.|++++|+++.+.+...+..
T Consensus       150 a~~~~~v~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          150 AKENQTAVDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTC---
T ss_pred             cCCCCCHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999887644

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.6e-34  Score=197.88  Aligned_cols=165  Identities=19%  Similarity=0.338  Sum_probs=140.9

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...++||+++|++|+|||||+++++++.+...+.++.. .+...+.+++..+.+.+|||+|++.+.     +++.+|+++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            35789999999999999999999999998877766643 445677888999999999999998876     667899999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      +|||++++.+++.+. .|+..+....  ++.|+++|+||+|+....          .+.+..+++.+++..++..+++++
T Consensus        91 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~e~  159 (184)
T 3ihw_A           91 FVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAAN----------PRVIDDSRARKLSTDLKRCTYYET  159 (184)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTTB----------CCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc----------ccccCHHHHHHHHHHcCCCeEEEe
Confidence            999999999999985 6888877653  579999999999996422          366788889999999876799999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        160 SAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ||+++.|++++|+++.+.+...++
T Consensus       160 Sa~~~~gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          160 CATYGLNVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999887654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.2e-34  Score=195.31  Aligned_cols=163  Identities=34%  Similarity=0.549  Sum_probs=140.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+++|++|+|||||+++|.++.+...+.++..........+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            57899999999999999999999998887777777766666667788889999999999999999988899999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|++++.+++.+. .|...+...  .++.|+++|+||+|+..            .+.+..++...+++.++..+++++||
T Consensus        82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (167)
T 1c1y_A           82 YSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLED------------ERVVGKEQGQNLARQWCNCAFLESSA  148 (167)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECccccc------------cccCCHHHHHHHHHHccCCcEEEecC
Confidence            9999999999885 566655543  35899999999999975            24566788888888885579999999


Q ss_pred             CCcCCHHHHHHHHHHHHh
Q psy14754        162 KSKEGVREVFETATRAAL  179 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~  179 (192)
                      ++|.|+++++++|.+.+.
T Consensus       149 ~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          149 KSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TTTBSHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998774

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=196.05  Aligned_cols=169  Identities=31%  Similarity=0.590  Sum_probs=144.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            3569999999999999999999999988776666665444 456677888899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|+|++++.++..+. .|+..+....++.|+++|+||+|+..            .+.....+...++..++ ++++++||
T Consensus        87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  152 (181)
T 3tw8_B           87 VVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPE------------RKVVETEDAYKFAGQMG-IQLFETSA  152 (181)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCch------------hcccCHHHHHHHHHHcC-CeEEEEEC
Confidence            999999999999884 78888888888899999999999876            34566778888888888 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcccc
Q psy14754        162 KSKEGVREVFETATRAALQVKKKK  185 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~~~  185 (192)
                      ++|.|++++|++|.+.+.+.++.+
T Consensus       153 ~~~~gi~~l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          153 KENVNVEEMFNCITELVLRAKKDN  176 (181)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999998876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.2e-34  Score=196.31  Aligned_cols=171  Identities=32%  Similarity=0.492  Sum_probs=144.2

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +...+||+++|++|+|||||+++|.+..+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            45689999999999999999999999988877777777666666778888899999999999999999988999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHH-hhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEV-KHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~-~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      +|+|+++++++..+. .|+..+ ... ..+.|+++|+||+|+..            .+.+..++...++...+ ++++++
T Consensus        86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~  151 (181)
T 2fn4_A           86 LVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLES------------QRQVPRSEASAFGASHH-VAYFEA  151 (181)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGG------------GCCSCHHHHHHHHHHTT-CEEEEC
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc------------ccccCHHHHHHHHHHcC-CeEEEe
Confidence            999999999998885 555554 333 34899999999999975            24566777888888877 599999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhhccccc
Q psy14754        160 SAKSKEGVREVFETATRAALQVKKKKK  186 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~~~~~~  186 (192)
                      ||+++.|++++|++|.+.+.+.++...
T Consensus       152 Sa~~~~gv~~l~~~l~~~~~~~~~~~~  178 (181)
T 2fn4_A          152 SAKLRLNVDEAFEQLVRAVRKYQEQEL  178 (181)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHTTC--
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhhccCC
Confidence            999999999999999999987665443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=3.5e-34  Score=194.43  Aligned_cols=168  Identities=27%  Similarity=0.362  Sum_probs=128.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc--ccccccccCCCCCEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED--YDRLRPLSYPDTDVI   80 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~~~~   80 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.+...+.....+.+++..+.+.+||+||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            457999999999999999999999988766544444444556667888889999999999887  455566788899999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      ++|||++++.+++.+. .|...+...  .++.|+++|+||+|+...            +.+..++...++..++ +++++
T Consensus        82 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~  147 (175)
T 2nzj_A           82 VIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARC------------REVSVEEGRACAVVFD-CKFIE  147 (175)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHHT-SEEEE
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhccc------------cccCHHHHHHHHHHcC-CeEEE
Confidence            9999999999999885 677666554  348999999999999763            4466677778888777 59999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +||++|.|++++|++|.+.+...++.
T Consensus       148 ~Sa~~g~gi~~l~~~l~~~~~~~~~~  173 (175)
T 2nzj_A          148 TSATLQHNVAELFEGVVRQLRLRRRD  173 (175)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHHC-
T ss_pred             EecCCCCCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999998776544

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=196.41  Aligned_cols=163  Identities=27%  Similarity=0.417  Sum_probs=137.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.++.+...+.++....+.....+++..+.+.+|||||++.+... ..+++.+|++++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il   97 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV   97 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence            4679999999999999999999999998877777777666666778888999999999999988774 568889999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      |||++++++++.+. .|+..+....    ++.|+++|+||+|+..            .+.+..+++.++++.++ +++++
T Consensus        98 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e  163 (187)
T 3c5c_A           98 VYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQ------------YRQVTKAEGVALAGRFG-CLFFE  163 (187)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGG------------GCSSCHHHHHHHHHHHT-CEEEE
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhh------------cCccCHHHHHHHHHHcC-CcEEE
Confidence            99999999999885 6877776543    5899999999999965            25567788889998888 59999


Q ss_pred             ecc-CCcCCHHHHHHHHHHHHhh
Q psy14754        159 CSA-KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       159 ~Sa-~~~~gi~~~~~~i~~~~~~  180 (192)
                      +|| +++.|++++|+.|.+.+.+
T Consensus       164 ~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          164 VSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             EeecCccccHHHHHHHHHHHHhh
Confidence            999 8999999999999988753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=4.9e-34  Score=192.67  Aligned_cols=165  Identities=31%  Similarity=0.551  Sum_probs=138.9

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDV   79 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~   79 (192)
                      |...++||+++|++|+|||||+++|.++.+...+.++.+... .....++...+.+.+||+||++.+...+..+++.+|+
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~   81 (170)
T 1r2q_A            2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA   81 (170)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence            345789999999999999999999999888776655554433 4556778888999999999999999999999999999


Q ss_pred             EEEEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         80 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      +++|+|++++.+++.+. .|+..+... .++.|+++|+||+|+...            +....++...++...+ +++++
T Consensus        82 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~  147 (170)
T 1r2q_A           82 AIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK------------RAVDFQEAQSYADDNS-LLFME  147 (170)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEE
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc------------cccCHHHHHHHHHHcC-CeEEE
Confidence            99999999999998885 676666554 468999999999998652            4456677888888877 59999


Q ss_pred             eccCCcCCHHHHHHHHHHHHh
Q psy14754        159 CSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      +||++|.|++++|++|.+.+.
T Consensus       148 ~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          148 TSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CCTTTCTTHHHHHHHHHHTSC
T ss_pred             EeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=2.7e-34  Score=193.53  Aligned_cols=164  Identities=34%  Similarity=0.542  Sum_probs=138.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +.++||+++|++|+|||||++++.+..+...+.++........+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            35799999999999999999999999887777777776666667788888999999999999998888888999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |+|+++++++..+. .|+..+....  .+.|+++|+||+|+...            +.+..++...+++.++ ++++++|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  147 (168)
T 1u8z_A           82 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRADQWN-VNYVETS  147 (168)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECC
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEeC
Confidence            99999999998884 6766666544  38999999999999752            4466778888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhh
Q psy14754        161 AKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~  180 (192)
                      |+++.|++++|+++.+.+.+
T Consensus       148 a~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          148 AKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             TTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2.7e-33  Score=192.57  Aligned_cols=164  Identities=32%  Similarity=0.608  Sum_probs=140.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..+++.+|++++
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~  100 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL  100 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence            568999999999999999999999988776666655433 4556677888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.+++.+. .|+..+.... ++.|+++|+||+|+..            .+.+..++..++++.++ ++++++||
T Consensus       101 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  166 (189)
T 2gf9_A          101 MYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLED------------ERVVPAEDGRRLADDLG-FEFFEASA  166 (189)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccc------------ccCCCHHHHHHHHHHcC-CeEEEEEC
Confidence            99999999998885 6877776654 5899999999999965            24566778888888888 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++.|++++|++|.+.+.+.
T Consensus       167 ~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          167 KENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             TTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1e-33  Score=193.56  Aligned_cols=164  Identities=34%  Similarity=0.527  Sum_probs=144.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   95 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999999888888888777777777888999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |+|++++.+++.+. .|...+...  ..+.|+++|+||+|+..            .+.+..+++..+++.++ ++++++|
T Consensus        96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~S  161 (183)
T 3kkq_A           96 VYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMH------------LRKVTRDQGKEMATKYN-IPYIETS  161 (183)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCST------------TCCSCHHHHHHHHHHHT-CCEEEEB
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchh------------ccCcCHHHHHHHHHHhC-CeEEEec
Confidence            99999999999985 666666442  35899999999999976            35677888899999988 6999999


Q ss_pred             cC-CcCCHHHHHHHHHHHHhh
Q psy14754        161 AK-SKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~-~~~gi~~~~~~i~~~~~~  180 (192)
                      |+ ++.|++++|++|.+.+.+
T Consensus       162 a~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          162 AKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             CSSSCBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHhh
Confidence            99 999999999999988764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=7.4e-34  Score=191.51  Aligned_cols=164  Identities=32%  Similarity=0.567  Sum_probs=139.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++....+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            4689999999999999999999999988777666655333 555667788899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|+|++++.+++.+. .|+..+....++.|+++|+||+|+...            +.+..++...+++.++ ++++++||
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  148 (168)
T 1z2a_A           83 LVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD------------SCIKNEEAEGLAKRLK-LRFYRTSV  148 (168)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEEECBT
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEEec
Confidence            999999999998885 577777665578999999999999752            4466777888888887 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++.|+++++++|.+.+.+
T Consensus       149 ~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          149 KEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TTTBSSHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=4.6e-34  Score=195.31  Aligned_cols=167  Identities=31%  Similarity=0.582  Sum_probs=114.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   86 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence            479999999999999999999999888776666665443 4556678888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.+++.+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..+++.++ ++++++||
T Consensus        87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa  152 (183)
T 2fu5_C           87 VYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK------------RQVSKERGEKLALDYG-IKFMETSA  152 (183)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSC------------CCSCHHHHHHHHHHHT-CEEEECCC
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCcc------------CcCCHHHHHHHHHHcC-CeEEEEeC
Confidence            99999999998885 6877776653 57999999999999762            4566778888888888 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhccc
Q psy14754        162 KSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +++.|++++|++|.+.+.+...+
T Consensus       153 ~~~~~i~~l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          153 KANINVENAFFTLARDIKAKMDK  175 (183)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhc
Confidence            99999999999999998876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.2e-33  Score=194.65  Aligned_cols=167  Identities=30%  Similarity=0.571  Sum_probs=139.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            4679999999999999999999999988777666655433 456677888899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++++++.+. .|+..+... .++.|+++|+||+|+..            .+.+..++...+++.++ ++++++|
T Consensus        99 ~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~S  164 (191)
T 2a5j_A           99 LVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLES------------RRDVKREEGEAFAREHG-LIFMETS  164 (191)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEEEC
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCC------------ccccCHHHHHHHHHHcC-CEEEEEe
Confidence            999999999999885 677777654 35899999999999965            24566778888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        161 AKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      |+++.|++++|++|.+.+.+..+
T Consensus       165 a~~~~gi~~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          165 AKTACNVEEAFINTAKEIYRKIQ  187 (191)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=197.65  Aligned_cols=168  Identities=29%  Similarity=0.541  Sum_probs=137.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            3578999999999999999999999988776666655433 556677888899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|||++++.+++.+. .|+..+.... ++.|+++|+||+|+..            .+.+..+++.++++.++..+++++|
T Consensus       107 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~------------~~~v~~~~~~~~~~~~~~~~~~~~S  173 (201)
T 2hup_A          107 LAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSE------------LREVSLAEAQSLAEHYDILCAIETS  173 (201)
T ss_dssp             EEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCcccc------------ccccCHHHHHHHHHHcCCCEEEEEe
Confidence            999999999999885 7887777654 6899999999999975            2456678888898888844999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        161 AKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      |+++.|++++|++|.+.+.+..+
T Consensus       174 A~~g~gi~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          174 AKDSSNVEEAFLRVATELIMRHG  196 (201)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999886544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.1e-33  Score=190.93  Aligned_cols=165  Identities=32%  Similarity=0.593  Sum_probs=136.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||++++.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   84 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   84 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence            4689999999999999999999999988776666665443 556677888899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      +|+|++++.+++.+. .|...+....     .+.|+++|+||+|+..             +....++...+++.....++
T Consensus        85 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~  150 (177)
T 1wms_A           85 LTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPY  150 (177)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHTTCCCE
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCcccc-------------cccCHHHHHHHHHhcCCceE
Confidence            999999999998884 6777665432     5789999999999863             34567778888875555799


Q ss_pred             EEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        157 LECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++||+++.|++++|+++.+.+.+.
T Consensus       151 ~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          151 FETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999988754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=6.3e-34  Score=195.02  Aligned_cols=167  Identities=34%  Similarity=0.533  Sum_probs=143.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   95 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence            35799999999999999999999999888777777777666667788888999999999999999888889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCC--CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |+|+++++++..+. .|+..+.....  +.|+++|+||+|+...            +.+..++...+++.++ ++++++|
T Consensus        96 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  161 (187)
T 2a9k_A           96 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVETS  161 (187)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEeC
Confidence            99999999998884 67666665443  8999999999999652            4466778888888888 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        161 AKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      |+++.|++++|++|.+.+.+.+.
T Consensus       162 a~~~~gi~~l~~~l~~~i~~~~~  184 (187)
T 2a9k_A          162 AKTRANVDKVFFDLMREIRARKM  184 (187)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999876553

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=6.5e-34  Score=193.76  Aligned_cols=165  Identities=19%  Similarity=0.342  Sum_probs=136.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||+++|.++.+.. +.++....+...+.+++..+.+.+|||||++.     ..+++++|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            358999999999999999999999998876 56666666666777888889999999999876     346678999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      |||++++++++.+. .|...+...    .++.|+++|+||+|+....          .+.+..+++.+++..++.+++++
T Consensus        79 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~~  147 (178)
T 2iwr_A           79 VFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASS----------PRVVGDARARALXADMKRCSYYE  147 (178)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB----------CCCSCHHHHHHHHHHHSSEEEEE
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccccccc----------cCcCCHHHHHHHHHhhcCCeEEE
Confidence            99999999999885 555444332    2579999999999995321          35677888888888775579999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +||++|.|++++|+++.+.+...++.
T Consensus       148 ~Sa~~~~~i~~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          148 TXATYGLNVDRVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998876554

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-34  Score=198.42  Aligned_cols=164  Identities=29%  Similarity=0.491  Sum_probs=138.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.++.+...+.++....+......+...+.+.+|||||++.+...+..+++.+|++++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            35799999999999999999999999887776666665555566778888999999999999998888888899999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      |||++++.+++.+. .|+..+...   .++.|+++|+||+|+..             +.+..++...++..++ ++++++
T Consensus        86 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~  150 (199)
T 2gf0_A           86 VFSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQ-------------REVDTREAQAVAQEWK-CAFMET  150 (199)
T ss_dssp             EEETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHHT-CEEEEC
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCc-------------cccCHHHHHHHHHHhC-CeEEEE
Confidence            99999999998885 455555442   24789999999999865             3355677777888877 599999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhh
Q psy14754        160 SAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ||+++.|++++|++|.+.+..+
T Consensus       151 Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          151 SAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             BTTTTBSHHHHHHHHHHHCSSS
T ss_pred             ecCCCCCHHHHHHHHHHHHhhh
Confidence            9999999999999999988765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=2.2e-33  Score=189.64  Aligned_cols=164  Identities=28%  Similarity=0.585  Sum_probs=132.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ..++||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            4679999999999999999999999988776666665444 345566778889999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+...            +.+..++...+++.++ .+++++|
T Consensus        84 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  149 (170)
T 1z08_A           84 LVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKE------------RHVSIQEAESYAESVG-AKHYHTS  149 (170)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEB
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEec
Confidence            999999999998885 6776665543 47999999999999762            4566778888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhh
Q psy14754        161 AKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~  180 (192)
                      |+++.|++++|++|.+.+.+
T Consensus       150 a~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          150 AKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             TTTTBSHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999988764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=7.6e-34  Score=197.61  Aligned_cols=165  Identities=33%  Similarity=0.536  Sum_probs=143.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+|+|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   91 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   91 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence            45789999999999999999999999888777777777666677788888999999999999999888888999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCC--CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||+++++++..+. .|+..+.....  +.|+++|+||+|+...            +.+..+++..++..++ ++++++|
T Consensus        92 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  157 (206)
T 2bov_A           92 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVETS  157 (206)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEC
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCcccc------------ccccHHHHHHHHHHhC-CeEEEEe
Confidence            99999999998884 67777766553  8999999999999762            4466778888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhh
Q psy14754        161 AKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |++|.|++++|++|.+.+...
T Consensus       158 a~~g~gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          158 AKTRANVDKVFFDLMREIRAR  178 (206)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHc
Confidence            999999999999999998775

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.8e-33  Score=189.44  Aligned_cols=162  Identities=26%  Similarity=0.355  Sum_probs=117.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      .+||+++|++|+|||||++++.+...... .++.+......+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            57999999999999999999997765443 33334444556678899999999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |++++++++.+. .|...+...  .++.|+++|+||+|+.+            .+.+..++...++..++ .+++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~  146 (166)
T 3q72_A           81 SVTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVR------------SREVSVDEGRACAVVFD-CKFIETSAA  146 (166)
T ss_dssp             ETTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCS------------SCCSCHHHHHHHHHHTT-CEEEECBGG
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEecccccc------------ccccCHHHHHHHHHHhC-CcEEEeccC
Confidence            999999999885 566655543  35899999999999976            35577788888888888 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhhh
Q psy14754        163 SKEGVREVFETATRAALQV  181 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~  181 (192)
                      +|.|++++|+++.+.+..+
T Consensus       147 ~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          147 LHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             GTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence            9999999999999988765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.8e-33  Score=191.83  Aligned_cols=168  Identities=31%  Similarity=0.504  Sum_probs=142.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   88 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   88 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEE
Confidence            579999999999999999999999988777666655433 5566778888899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.++..+. .|+..+.... ++.|+++|+||+|+...            +.+...++..++...+ ++++++||
T Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  154 (186)
T 2bme_A           89 VYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDAD------------REVTFLEASRFAQENE-LMFLETSA  154 (186)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEecC
Confidence            99999999998885 6776666543 58999999999999652            4466777888888887 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcccc
Q psy14754        162 KSKEGVREVFETATRAALQVKKKK  185 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~~~  185 (192)
                      +++.|++++|+++.+.+.+.....
T Consensus       155 ~~~~gi~~l~~~l~~~~~~~~~~~  178 (186)
T 2bme_A          155 LTGENVEEAFVQCARKILNKIESG  178 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999998765443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-33  Score=190.47  Aligned_cols=165  Identities=29%  Similarity=0.548  Sum_probs=139.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      .++||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            478999999999999999999999988776666655443 4556778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.++..+. .|+..+.... ++.|+++|+||+|+.....         .+.+..++...++..++ ++++++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~-~~~~~~Sa  150 (170)
T 1ek0_A           82 VYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQEGG---------ERKVAREEGEKLAEEKG-LLFFETSA  150 (170)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGSSC---------CCCSCHHHHHHHHHHHT-CEEEECCT
T ss_pred             EEecCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccccc---------ccCCCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999998885 5776666543 6899999999999976422         25567778888888877 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHh
Q psy14754        162 KSKEGVREVFETATRAAL  179 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~  179 (192)
                      +++.|++++|++|.+.+.
T Consensus       151 ~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          151 KTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TTCTTHHHHHHHHHTTSC
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999988764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.8e-33  Score=189.66  Aligned_cols=167  Identities=30%  Similarity=0.587  Sum_probs=130.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI   80 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   80 (192)
                      ...+||+++|++|+|||||+++|.+..+.. .+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            457999999999999999999999988753 3445444433 33446788889999999999999999999999999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      ++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+..++...+++.++ ++++++
T Consensus        88 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~  153 (180)
T 2g6b_A           88 LLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHE------------RVVKREDGEKLAKEYG-LPFMET  153 (180)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTSC------------CCSCHHHHHHHHHHHT-CCEEEC
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEE
Confidence            9999999999998884 6777776654 58999999999999763            4566777888888877 599999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        160 SAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ||+++.|++++|+++.+.+.+.+.
T Consensus       154 Sa~~~~gi~~l~~~l~~~~~~~~~  177 (180)
T 2g6b_A          154 SAKTGLNVDLAFTAIAKELKRRSM  177 (180)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC---
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999998876543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.7e-33  Score=191.08  Aligned_cols=166  Identities=34%  Similarity=0.593  Sum_probs=139.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+... ...+.++...+.+.+||+||++.+...+..+++.+|+++
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            4579999999999999999999999988776656555433 455667888899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+..            .+.+..++...+++.++ ++++++|
T Consensus        90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S  155 (181)
T 2efe_B           90 IVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLD------------ARKVTAEDAQTYAQENG-LFFMETS  155 (181)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTT------------TCCSCHHHHHHHHHHTT-CEEEECC
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccc------------cccCCHHHHHHHHHHcC-CEEEEEE
Confidence            999999999988875 6777666554 5899999999999965            24566778888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |+++.|++++|++|.+.+...+
T Consensus       156 a~~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          156 AKTATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SSSCTTHHHHHHHHHHTCC---
T ss_pred             CCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999886654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=6.8e-34  Score=193.56  Aligned_cols=168  Identities=29%  Similarity=0.460  Sum_probs=139.0

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECC-eEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDS-KQVELALWDTAGQEDYDRLRPLSYPDTDV   79 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~   79 (192)
                      ...++||+++|++|+|||||+++|.+..+...+.++.+ +.....+.+.+ ..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            35689999999999999999999999887765555554 33345556665 67899999999999999999999999999


Q ss_pred             EEEEEECCChhhhhchhhhhHHHHhhhC---CCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         80 ILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      +++|+|++++.+++.+. .|+..+....   .+.| +++|+||+|+..            .+.+..++...+++.++ ++
T Consensus        83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~  148 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEH------------MRTIKPEKHLRFCQENG-FS  148 (178)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGG------------GCSSCHHHHHHHHHHHT-CE
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEcccccc------------ccccCHHHHHHHHHHcC-Cc
Confidence            99999999999998884 7777776532   2456 899999999965            24566778888888887 59


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        156 YLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ++++||+++.|++++|++|.+.+.+.+.
T Consensus       149 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          149 SHFVSAKTGDSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999877654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=4e-33  Score=191.76  Aligned_cols=167  Identities=32%  Similarity=0.555  Sum_probs=131.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +.++||+++|.+|+|||||+++|.+..+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            35799999999999999999999999887776676666666667778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |+|+++..++..+ ..|...+....  .+.|+++|+||+|+..             +....++..++++.++ ++++++|
T Consensus        99 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S  163 (190)
T 3con_A           99 VFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT-------------RTVDTKQAHELAKSYG-IPFIETS  163 (190)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEECC
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCc-------------ccCCHHHHHHHHHHcC-CeEEEEe
Confidence            9999999998888 46777766543  3799999999999865             2355677888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        161 AKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      |+++.|+++++++|.+.+.+.+.+
T Consensus       164 a~~~~gi~~l~~~l~~~~~~~~~~  187 (190)
T 3con_A          164 AKTRQGVEDAFYTLVREIRQYRMK  187 (190)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998876544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-33  Score=194.65  Aligned_cols=166  Identities=27%  Similarity=0.571  Sum_probs=141.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL  104 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999988776666655433 4566778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||++++.+++.+. .|+..+.... .+.|+++|+||+|+..            .+.+..+++..++...+ ++++++||
T Consensus       105 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~Sa  170 (201)
T 2ew1_A          105 TYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAE------------RREVSQQRAEEFSEAQD-MYYLETSA  170 (201)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGG------------GCSSCHHHHHHHHHHHT-CCEEECCT
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc------------ccccCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999999884 7887777654 4789999999999965            24566777888888777 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        162 KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ++|.|++++|++|.+.+.+..+
T Consensus       171 ~~g~gv~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          171 KESDNVEKLFLDLACRLISEAR  192 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999887543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=6.5e-34  Score=191.48  Aligned_cols=163  Identities=34%  Similarity=0.538  Sum_probs=139.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+++|++|+|||||++++.++.+...+.++........+.+++....+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            57999999999999999999999998887777777666667777888889999999999999998888889999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|++++.+++.+. .|...+....  .+.|+++|+||+|+..            .+.+...+...+++.++ ++++++||
T Consensus        82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  147 (167)
T 1kao_A           82 YSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLES------------EREVSSSEGRALAEEWG-CPFMETSA  147 (167)
T ss_dssp             EETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGG------------GCCSCHHHHHHHHHHHT-SCEEEECT
T ss_pred             EeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcccc------------cccCCHHHHHHHHHHhC-CCEEEecC
Confidence            9999999988885 5555554433  4899999999999865            24566777888888887 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++.|+++++++|.+.+.+
T Consensus       148 ~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          148 KSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHhh
Confidence            9999999999999987743

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.4e-33  Score=192.45  Aligned_cols=169  Identities=28%  Similarity=0.519  Sum_probs=126.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVI   80 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   80 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+... ...+.++ .....+.+||+||++.+...+..+++.+|++
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC   85 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence            3579999999999999999999999988776666654333 4444444 4568899999999999999999999999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      ++|+|++++.+++.+. .|+..+....     .+.|+++|+||+|+...           .+.+..++...+++.....+
T Consensus        86 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~v~~~~~~~~~~~~~~~~  153 (182)
T 1ky3_A           86 VLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEES-----------KKIVSEKSAQELAKSLGDIP  153 (182)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-----------GCCSCHHHHHHHHHHTTSCC
T ss_pred             EEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCccccc-----------cccCCHHHHHHHHHhcCCCe
Confidence            9999999999998884 6766655432     57999999999998542           24456777888887555579


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        156 YLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ++++||+++.|++++|++|.+.+.+.++
T Consensus       154 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  181 (182)
T 1ky3_A          154 LFLTSAKNAINVDTAFEEIARSALQQNQ  181 (182)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999876644

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=6e-33  Score=193.23  Aligned_cols=165  Identities=29%  Similarity=0.582  Sum_probs=141.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil   86 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   86 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence            578999999999999999999999998777666665444 4556778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.++..+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..++..++ ++++++||
T Consensus        87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  152 (206)
T 2bcg_Y           87 VYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK------------RVVEYDVAKEFADANK-MPFLETSA  152 (206)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEECCT
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CeEEEEeC
Confidence            99999999998885 6777776654 57999999999999762            4566777888888877 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhc
Q psy14754        162 KSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ++|.|++++|++|.+.+.+..
T Consensus       153 ~~g~gi~~l~~~l~~~i~~~~  173 (206)
T 2bcg_Y          153 LDSTNVEDAFLTMARQIKESM  173 (206)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999887653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=3.4e-33  Score=188.60  Aligned_cols=163  Identities=23%  Similarity=0.493  Sum_probs=139.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+... .....+......+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4679999999999999999999999988776666655443 456677888899999999999999999989999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++.++..+ ..|+..+... .+..|+++|+||+|+...            +.+..++...+++.++ .+++++|
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S  149 (170)
T 1z0j_A           84 IVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDV------------REVMERDAKDYADSIH-AIFVETS  149 (170)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECB
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence            99999999998888 4787777665 468999999999999752            4566777888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHh
Q psy14754        161 AKSKEGVREVFETATRAAL  179 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~  179 (192)
                      |+++.|++++|++|.+.+.
T Consensus       150 a~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          150 AKNAININELFIEISRRIP  168 (170)
T ss_dssp             TTTTBSHHHHHHHHHHHCC
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            9999999999999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=4.9e-33  Score=192.11  Aligned_cols=166  Identities=31%  Similarity=0.602  Sum_probs=143.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   94 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   94 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence            468999999999999999999999988777666665444 5566778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.+++.+. .|+..+.... .+.|+++|+||+|+..            .+.+...+...++..++ ++++++||
T Consensus        95 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  160 (196)
T 3tkl_A           95 VYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTT------------KKVVDYTTAKEFADSLG-IPFLETSA  160 (196)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT------------TCCSCHHHHHHHHHHTT-CCEEEECT
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccc------------ccccCHHHHHHHHHHcC-CcEEEEeC
Confidence            99999999999985 6877776654 4789999999999976            35567788888998888 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        162 KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +++.|++++|++|.+.+.++..
T Consensus       161 ~~g~gv~~l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          161 KNATNVEQSFMTMAAEIKKRMG  182 (196)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999988754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.3e-34  Score=195.90  Aligned_cols=165  Identities=28%  Similarity=0.565  Sum_probs=133.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999998887666555543 33556677888899999999999999988888999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+..++...+++.+...+++++|
T Consensus       104 lV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~S  170 (192)
T 2il1_A          104 LVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD------------REITRQQGEKFAQQITGMRFCEAS  170 (192)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTSTTCEEEECB
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHhcCCCeEEEEe
Confidence            999999999999884 7887777654 47999999999999652            456677788888876557999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhh
Q psy14754        161 AKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~  180 (192)
                      |++|.|++++|++|.+.+.+
T Consensus       171 A~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          171 AKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.3e-33  Score=189.41  Aligned_cols=163  Identities=30%  Similarity=0.393  Sum_probs=125.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce-eeeeeEEEEECCeEEEEEEEeCCCCCcccc-cccccCCCCCEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQEDYDR-LRPLSYPDTDVILM   82 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~   82 (192)
                      .+||+++|++|+|||||+++|.+........++. .......+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            4799999999999999999999876655443333 334455667888899999999999988876 66667888999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCC--CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++++++++.+. .|+..+....+  +.|+++|+||+|+.+            .+.+..++...+++.++ ++++++|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S  147 (169)
T 3q85_A           82 VFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLAR------------SREVSLEEGRHLAGTLS-CKHIETS  147 (169)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CEEEECB
T ss_pred             EEECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchhh------------cccCCHHHHHHHHHHcC-CcEEEec
Confidence            99999999999985 66666665543  899999999999975            35677888889999988 4999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhh
Q psy14754        161 AKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |+++.|++++|+++.+.+..+
T Consensus       148 a~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          148 AALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHT
T ss_pred             CccCCCHHHHHHHHHHHHHhc
Confidence            999999999999999988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=191.85  Aligned_cols=166  Identities=27%  Similarity=0.446  Sum_probs=140.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+|+|++|+|||||+++|.+..+...+.++.+.. ....+.+....+.+.+||+||++.+...+..+++.+|++|+
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~  103 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALL  103 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            46999999999999999999999998877666654433 34566678888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.++..+. .|+..+.... .+.|+++|+||+|+...            +.+...+...++...+ ++++++||
T Consensus       104 v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  169 (193)
T 2oil_A          104 VFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQA------------REVPTEEARMFAENNG-LLFLETSA  169 (193)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEECT
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999998885 6777766543 58999999999999752            4456777888888877 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        162 KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +++.|++++|++|.+.+.+...
T Consensus       170 ~~~~gi~~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          170 LDSTNVELAFETVLKEIFAKVS  191 (193)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999876543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=3e-33  Score=190.37  Aligned_cols=163  Identities=33%  Similarity=0.558  Sum_probs=138.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   93 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEE
Confidence            579999999999999999999999988776666655333 5556678888999999999999999988889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.+++.+. .|+..+.... ++.|+++|+||+|+..            .+.+..+++.++++.++ ++++++||
T Consensus        94 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  159 (179)
T 1z0f_A           94 VYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEA------------QRDVTYEEAKQFAEENG-LLFLEASA  159 (179)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred             EEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999998884 7777776654 5899999999999965            24566778888888887 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++.|++++|+++.+.+.+
T Consensus       160 ~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          160 KTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=3.5e-33  Score=193.97  Aligned_cols=165  Identities=29%  Similarity=0.589  Sum_probs=141.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            4579999999999999999999999988776666555433 455667888899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+..            .+.+..+++..+++.++ ++++++|
T Consensus        86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S  151 (203)
T 1zbd_A           86 LMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMED------------ERVVSSERGRQLADHLG-FEFFEAS  151 (203)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTT------------SCCSCHHHHHHHHHHHT-CEEEECB
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCc------------ccccCHHHHHHHHHHCC-CeEEEEE
Confidence            999999999998885 6777776654 5899999999999965            24566778888888888 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhh
Q psy14754        161 AKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |+++.|++++|++|.+.+.+.
T Consensus       152 a~~~~gi~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          152 AKDNINVKQTFERLVDVICEK  172 (203)
T ss_dssp             TTTTBSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-33  Score=191.05  Aligned_cols=164  Identities=29%  Similarity=0.485  Sum_probs=136.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+++|++|+|||||+++|.++.+...+.++...........+.....+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            47899999999999999999999988877666666655555666788889999999999999988888888999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|++++.+++.+. .|...+...   .++.|+++|+||+|+...            +.+...+...++..++ ++++++|
T Consensus        82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S  147 (172)
T 2erx_A           82 YSITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPS------------REVQSSEAEALARTWK-CAFMETS  147 (172)
T ss_dssp             EETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred             EECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEec
Confidence            9999999998885 555555443   257999999999999763            4456667778888777 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhh
Q psy14754        161 AKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |+++.|++++|++|.+.+..+
T Consensus       148 a~~~~gi~~l~~~l~~~~~~~  168 (172)
T 2erx_A          148 AKLNHNVKELFQELLNLEKRR  168 (172)
T ss_dssp             TTTTBSHHHHHHHHHHTCCSS
T ss_pred             CCCCcCHHHHHHHHHHHHhhh
Confidence            999999999999999877544

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=3.1e-33  Score=188.82  Aligned_cols=163  Identities=29%  Similarity=0.624  Sum_probs=134.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999988776666665444 4455667778899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.++..+. .|+..+.... ++.|+++|+||+|+..             +....++...+++.++ ++++++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa  146 (170)
T 1g16_A           82 VYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSA  146 (170)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCc-------------CccCHHHHHHHHHHcC-CeEEEEEC
Confidence            99999999998884 6777776654 5899999999999933             4456777888888887 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++.|++++|++|.+.+.++
T Consensus       147 ~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          147 KNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TTTBSHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-33  Score=195.01  Aligned_cols=167  Identities=31%  Similarity=0.506  Sum_probs=135.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil   91 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI   91 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence            468999999999999999999999998877666665444 4556778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||++++.+++.+. .|+..+.... .+.|++||+||+|+..            .+.+..+++..+++.++ ++++++||
T Consensus        92 V~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~Sa  157 (223)
T 3cpj_B           92 VYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAH------------LRAVPTEESKTFAQENQ-LLFTETSA  157 (223)
T ss_dssp             EEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGG------------GCCSCHHHHHHHHHHTT-CEEEECCC
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999998885 6877776653 4799999999999975            24566777888888877 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhccc
Q psy14754        162 KSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +++.|++++|++|.+.+.+...+
T Consensus       158 ~~~~gi~~l~~~l~~~i~~~~~~  180 (223)
T 3cpj_B          158 LNSENVDKAFEELINTIYQKVSK  180 (223)
T ss_dssp             C-CCCHHHHHHHHHHHHTTCC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999876543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-33  Score=193.29  Aligned_cols=165  Identities=30%  Similarity=0.460  Sum_probs=141.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++. ...+..+++.+|++++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil  104 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL  104 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence            357999999999999999999999999887777777776666677888899999999999987 6677778889999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++++++++.+. .|+..+...  .++.|+++|+||+|+...            +.+..+++..+++.++ ++++++|
T Consensus       105 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S  170 (196)
T 2atv_A          105 VYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHS------------RQVSTEEGEKLATELA-CAFYECS  170 (196)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SEEEECC
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHhC-CeEEEEC
Confidence            99999999999885 576666553  258999999999999762            4566788888888887 5999999


Q ss_pred             cCCcC-CHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKE-GVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~-gi~~~~~~i~~~~~~~~  182 (192)
                      |+++. |++++|++|.+.+.+.+
T Consensus       171 a~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          171 ACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             TTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcCCcCHHHHHHHHHHHHHhhc
Confidence            99999 99999999999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=5.8e-33  Score=191.33  Aligned_cols=167  Identities=28%  Similarity=0.484  Sum_probs=139.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee--EEEEECCe---------EEEEEEEeCCCCCcccccccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV--ADIEVDSK---------QVELALWDTAGQEDYDRLRPL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~l~D~~g~~~~~~~~~~   72 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+.  ..+...+.         .+.+.+||+||++.+...+..
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   89 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA   89 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence            4699999999999999999999998887766666554432  33444444         789999999999999999999


Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      +++.+|++|+|+|++++.++..+. .|+..+....  .+.|+++|+||+|+..            .+.+..+++.+++..
T Consensus        90 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~  156 (195)
T 3bc1_A           90 FFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLED------------QRAVKEEEARELAEK  156 (195)
T ss_dssp             TTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGG------------GCCSCHHHHHHHHHH
T ss_pred             HHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc------------ccccCHHHHHHHHHH
Confidence            999999999999999999998885 7777776654  5899999999999965            245667778888888


Q ss_pred             cCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        151 INAFAYLECSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      ++ ++++++||+++.|++++|++|.+.+.+..++
T Consensus       157 ~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          157 YG-IPYFETSAANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             HT-CCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            87 5999999999999999999999999876544

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=7.8e-33  Score=192.70  Aligned_cols=166  Identities=30%  Similarity=0.560  Sum_probs=137.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            367999999999999999999999998877766665433 3455666777889999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      +|+|++++.++..+. .|+..+....     .+.|+++|+||+|+..             +....++...++.....+++
T Consensus        86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~  151 (207)
T 1vg8_A           86 LVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPY  151 (207)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-------------CCSCHHHHHHHHHHTTSCCE
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-------------cccCHHHHHHHHHhcCCceE
Confidence            999999999998884 6776665433     4789999999999863             33456677777774555799


Q ss_pred             EEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        157 LECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +++||++|.|++++|++|.+.+.+.+
T Consensus       152 ~~~Sa~~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          152 FETSAKEAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=5.2e-33  Score=189.21  Aligned_cols=164  Identities=33%  Similarity=0.537  Sum_probs=137.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ..++||+++|++|+|||||+++|++..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            35699999999999999999999998887776666653 33556677888899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++.++..+. .|+..+... ..+.|+++|+||+|+...            +.+...+...++..++ ++++++|
T Consensus        92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  157 (179)
T 2y8e_A           92 VVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK------------RQVSTEEGERKAKELN-VMFIETS  157 (179)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEEEB
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc------------CcCCHHHHHHHHHHcC-CeEEEEe
Confidence            999999999998885 666665543 358999999999999752            4566777788888777 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhh
Q psy14754        161 AKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~  180 (192)
                      |+++.|++++|++|.+.+.+
T Consensus       158 a~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          158 AKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             TTTTBSHHHHHHHHHHTCC-
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999987654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=193.51  Aligned_cols=167  Identities=30%  Similarity=0.518  Sum_probs=133.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  103 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL  103 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEE
Confidence            579999999999999999999999888776666655433 4556678888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.+++.+. .|+..+.... ++.|+++|+||+|+..            .+.+...++..+++..+ ++++++||
T Consensus       104 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~SA  169 (200)
T 2o52_A          104 VYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDP------------EREVTFLEASRFAQENE-LMFLETSA  169 (200)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGG------------GCCSCHHHHHHHHHHTT-CEEEEECT
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCccc------------ccccCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999999885 6776665543 5899999999999965            24466777888888877 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhccc
Q psy14754        162 KSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +++.|++++|++|.+.+.+....
T Consensus       170 ~~g~gi~~l~~~l~~~i~~~~~~  192 (200)
T 2o52_A          170 LTGENVEEAFLKCARTILNKIDS  192 (200)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998876543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-32  Score=189.18  Aligned_cols=165  Identities=32%  Similarity=0.604  Sum_probs=141.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+... ...+.++...+.+.+|||||++.+...+..+++.+|++|+
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            468999999999999999999999988776666654433 5566778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |+|++++.++..+. .|+..+....  .+.|+++|+||+|+..             +.+..++...+++.++ ++++++|
T Consensus        94 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S  158 (195)
T 1x3s_A           94 VYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-------------REVDRNEGLKFARKHS-MLFIEAS  158 (195)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc-------------cccCHHHHHHHHHHcC-CEEEEec
Confidence            99999999998885 7887777654  4799999999999843             3456677888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        161 AKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      |+++.|++++|++|.+.+.....
T Consensus       159 a~~~~gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          159 AKTCDGVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999887543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=1.5e-32  Score=204.06  Aligned_cols=178  Identities=57%  Similarity=0.994  Sum_probs=156.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ..++|+++|.+|+|||||++++.++.+...+.++........+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            46899999999999999999999998887777777776666777888899999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||++++.++..+...|...+....++.|+++|+||+|+...............+.+...++..+++.++..+++++||++
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  313 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  313 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999876898888887779999999999999876555555555556778889999999998866999999999


Q ss_pred             cCCHHHHHHHHHHHHhhh
Q psy14754        164 KEGVREVFETATRAALQV  181 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~~  181 (192)
                      |.|++++|+.|.+.+..+
T Consensus       314 ~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          314 QRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTHHHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            999999999999988654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=7.3e-33  Score=186.04  Aligned_cols=162  Identities=33%  Similarity=0.574  Sum_probs=138.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+++|++|+|||||++++.+..+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            46899999999999999999999998877767776666666677888889999999999999988888888999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|++++.++..+ ..|...+....  .+.|+++|+||+|+..             +....++..++++.++ ++++++||
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa  146 (166)
T 2ce2_X           82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAA-------------RTVESRQAQDLARSYG-IPYIETSA  146 (166)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEEECT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhh-------------cccCHHHHHHHHHHcC-CeEEEecC
Confidence            999999998888 46777766554  3799999999999865             2345677788888887 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++.|+++++++|.+.+.+
T Consensus       147 ~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          147 KTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999988753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.5e-33  Score=191.13  Aligned_cols=165  Identities=26%  Similarity=0.492  Sum_probs=139.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ..++||+++|++|+|||||+++|.+..+...+.++.+... ...+.++.....+.+||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            3579999999999999999999999987766566555443 445566778899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+..            .+.+..+++.++++.++ ++++++|
T Consensus       101 lV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~S  166 (192)
T 2fg5_A          101 IVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSD------------IREVPLKDAKEYAESIG-AIVVETS  166 (192)
T ss_dssp             EEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGG------------GCCSCHHHHHHHHHTTT-CEEEECB
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEEe
Confidence            999999999998884 7877776654 5799999999999965            24566778888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhh
Q psy14754        161 AKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |+++.|++++|++|.+.+.+.
T Consensus       167 a~~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          167 AKNAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TTTTBSHHHHHHHHHHTCC--
T ss_pred             CCCCcCHHHHHHHHHHHHHhh
Confidence            999999999999999887654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=6.6e-33  Score=190.60  Aligned_cols=163  Identities=28%  Similarity=0.548  Sum_probs=135.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccc-ccccccCCCCCEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYD-RLRPLSYPDTDVI   80 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~~~~   80 (192)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+. ..+..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            4679999999999999999999999988777666655433 4566678888999999999999888 7888889999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      |+|+|++++.++..+. .|+..+....  .+.|+++|+||+|+..            .+.+..++...++..++ +++++
T Consensus        98 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~  163 (189)
T 1z06_A           98 VFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRS------------AIQVPTDLAQKFADTHS-MPLFE  163 (189)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CCEEE
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc------------cceeCHHHHHHHHHHcC-CEEEE
Confidence            9999999999999885 6777776653  5899999999999965            24566778888888887 59999


Q ss_pred             eccCCc---CCHHHHHHHHHHHHh
Q psy14754        159 CSAKSK---EGVREVFETATRAAL  179 (192)
Q Consensus       159 ~Sa~~~---~gi~~~~~~i~~~~~  179 (192)
                      +||+++   .|++++|++|.+.+.
T Consensus       164 ~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          164 TSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             CCSSSGGGGSCHHHHHHHHC----
T ss_pred             EeCCcCCcccCHHHHHHHHHHHHh
Confidence            999999   999999999987764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=192.67  Aligned_cols=166  Identities=30%  Similarity=0.392  Sum_probs=133.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccc-cccccCCCCCEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDR-LRPLSYPDTDVI   80 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~   80 (192)
                      ...+||+++|++|+|||||+++|.+........++.+ +.....+.+++..+.+.+||++|++.+.. .+..+++.+|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            4679999999999999999999976443322233332 33345567788899999999999987764 666778889999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      |+|||++++.++..+. .|+..+....  .+.|+++|+||+|+..            .+.+..+++..+++.++ +++++
T Consensus       101 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e  166 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLAR------------SREVSLEEGRHLAGTLS-CKHIE  166 (195)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCTT------------TCCSCHHHHHHHHHHTT-CEEEE
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhccc------------cCCcCHHHHHHHHHHhC-CEEEE
Confidence            9999999999999985 6777776544  4799999999999975            24567778888988887 59999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +||+++.|++++|+++.+.+...+
T Consensus       167 ~Sa~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          167 TSAALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred             EcCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999887544

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-34  Score=196.02  Aligned_cols=165  Identities=32%  Similarity=0.590  Sum_probs=142.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+|+|++|+|||||+++|.+..+...+.++.+... ...+......+.+.+||+||++.+...+..+++.+|++++
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL  101 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence            579999999999999999999999888777666655333 4555667778899999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||++++.+++.+. .|+..+.... ++.|+++|+||+|+..            .+....++...++..++ ++++++||
T Consensus       102 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  167 (191)
T 3dz8_A          102 MYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEE------------ERVVPTEKGQLLAEQLG-FDFFEASA  167 (191)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc------------ccccCHHHHHHHHHHcC-CeEEEEEC
Confidence            99999999999885 6888887755 5899999999999865            35567788888998888 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhc
Q psy14754        162 KSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +++.|++++|++|.+.+.+..
T Consensus       168 ~~~~gi~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          168 KENISVRQAFERLVDAICDKM  188 (191)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999987654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=6.3e-33  Score=192.21  Aligned_cols=170  Identities=29%  Similarity=0.470  Sum_probs=133.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  105 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL  105 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence            3579999999999999999999999988766666555333 456677888899999999999999988888899999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.....      ....+.+..+++..++..++ ++++++|
T Consensus       106 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~v~~~~~~~~~~~~~-~~~~~~S  177 (199)
T 2p5s_A          106 LLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAA------TEGQKCVPGHFGEKLAMTYG-ALFCETS  177 (199)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHHH------HTTCCCCCHHHHHHHHHHHT-CEEEECC
T ss_pred             EEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccccc------cccccccCHHHHHHHHHHcC-CeEEEee
Confidence            999999999999885 6887776654 4799999999999863211      01135567788888888887 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhh
Q psy14754        161 AKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~  180 (192)
                      |+++.|++++|++|.+.+.+
T Consensus       178 A~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          178 AKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTTCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999988754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.3e-33  Score=196.69  Aligned_cols=169  Identities=24%  Similarity=0.381  Sum_probs=108.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhC--CCCCcccCcee-eeeeEEEEECCe--EEEEEEEeCCCCCcccccccccCCCC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKD--QFPEVYVPTVF-ENYVADIEVDSK--QVELALWDTAGQEDYDRLRPLSYPDT   77 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~   77 (192)
                      ...+||+++|++|+|||||+++|.+.  .+...+.++.+ +.....+.+++.  .+.+.+||+||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46789999999999999999999998  66666555554 334555666665  88999999999999999999999999


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhCC----CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      |++|+|+|++++.+++.+. .|+..+.....    +.|+++|+||+|+...           .+.+..+++..+++.++ 
T Consensus        98 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~v~~~~~~~~~~~~~-  164 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQ-----------RHQVRLDMAQDWATTNT-  164 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC------------------CCCHHHHHHHHHHTT-
T ss_pred             cEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchh-----------hccCCHHHHHHHHHHcC-
Confidence            9999999999999998885 78888776543    8999999999998652           14466778888998888 


Q ss_pred             ceEEEeccCC-cCCHHHHHHHHHHHHhhhccc
Q psy14754        154 FAYLECSAKS-KEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       154 ~~~~~~Sa~~-~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      ++++++||++ +.|++++|++|.+.+.+...+
T Consensus       165 ~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          165 LDFFDVSANPPGKDADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             CEEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            5999999999 999999999999988876544

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-32  Score=189.48  Aligned_cols=166  Identities=25%  Similarity=0.354  Sum_probs=130.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCC--CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-ccccccccCCCCCEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-YDRLRPLSYPDTDVI   80 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~~   80 (192)
                      ..+||+++|++|+|||||+++|.+...  ...+.+++.+.....+.+++..+.+.+|||+|++. +......+++.++++
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~  115 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY  115 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence            468999999999999999999996443  33333333344456667788889999999999876 455566778899999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      |+|||++++++|+.+. .|...+...  .++.|+++|+||+|+..            .+.+..+++..++..++ +++++
T Consensus       116 ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~------------~r~v~~~e~~~~a~~~~-~~~~e  181 (211)
T 2g3y_A          116 LIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVR------------CREVSVSEGRACAVVFD-CKFIE  181 (211)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEE
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHHhc------------CceEeHHHHHHHHHHcC-CEEEE
Confidence            9999999999999885 576655542  24799999999999965            24566677778888777 59999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +||++|.|++++|+++.+.+...+.
T Consensus       182 ~SAk~g~~v~elf~~l~~~i~~~~~  206 (211)
T 2g3y_A          182 TSAAVQHNVKELFEGIVRQVRLRRD  206 (211)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHCC
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998865543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=206.69  Aligned_cols=176  Identities=59%  Similarity=1.030  Sum_probs=146.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.++.+...+.++........+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            35799999999999999999999998887776666666555555667777889999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+|++++.+++.+...|...+....++.|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~  187 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
Confidence            99999999999886688888887767899999999999987554444443333445666777788888875589999999


Q ss_pred             CcCCHHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRAA  178 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~  178 (192)
                      +|.|++++|++|.+.+
T Consensus       188 ~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          188 TQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999998765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=7.4e-32  Score=188.53  Aligned_cols=163  Identities=29%  Similarity=0.625  Sum_probs=138.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   98 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL   98 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999988776666655443 4556678888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.++..+. .|+..+.... .+.|+++|+||+|+..             +....++...++..++ ++++++||
T Consensus        99 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa  163 (213)
T 3cph_A           99 VYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSA  163 (213)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSS-------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc-------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999998885 6777776654 3799999999999833             4456677788888877 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++.|++++|++|.+.+.+.
T Consensus       164 ~~~~gi~~l~~~l~~~~~~~  183 (213)
T 3cph_A          164 KNDDNVNEIFFTLAKLIQEK  183 (213)
T ss_dssp             TTTBSSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=8.1e-32  Score=187.09  Aligned_cols=162  Identities=27%  Similarity=0.474  Sum_probs=133.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeE------------------------------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQ------------------------------   52 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------------------------   52 (192)
                      ..+||+++|++|+|||||+++|++..+...+.++.+..+ ...+.+.+..                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            589999999999999999999999988776666654333 3333444333                              


Q ss_pred             -------EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         53 -------VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        53 -------~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                             ..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+. .|+..+..... .|+++|+||+| ..  
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D-~~--  160 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISSN-YIIILVANKID-KN--  160 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSC-CEEEEEEECTT-CC--
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhCC-CcEEEEEECCC-cc--
Confidence                   78999999999999999999999999999999999999998874 77777766543 99999999999 32  


Q ss_pred             cchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                                .+....++..++++.++ ++++++||+++.|++++|++|.+.+.+.
T Consensus       161 ----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          161 ----------KFQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             -----------CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ----------cccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                      24566788888888887 5999999999999999999999888654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=7.6e-33  Score=194.18  Aligned_cols=166  Identities=30%  Similarity=0.508  Sum_probs=137.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCe----------EEEEEEEeCCCCCccccccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSK----------QVELALWDTAGQEDYDRLRP   71 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~l~D~~g~~~~~~~~~   71 (192)
                      ...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.++..          .+.+.+|||||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            3579999999999999999999999888766666555433 334445544          78899999999999998888


Q ss_pred             ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754         72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ  149 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (192)
                      .+++.+|++|+|||++++.+++.+. .|+..+....  .+.|+++|+||+|+..            .+.+..++...+++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~------------~~~v~~~~~~~~~~  169 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPD------------QREVNERQARELAD  169 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGG------------GCCSCHHHHHHHHH
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCcccc------------ccccCHHHHHHHHH
Confidence            9999999999999999999998884 6777766544  5899999999999965            24566778888888


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .++ ++++++||+++.|++++|++|.+.+.+..
T Consensus       170 ~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          170 KYG-IPYFETSAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             HTT-CCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             HCC-CcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            887 59999999999999999999999987753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=2.1e-32  Score=188.98  Aligned_cols=166  Identities=28%  Similarity=0.343  Sum_probs=129.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccC-----------ceeeee-eEEE-EECCeEEEEEEEeCCCCCccccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-----------TVFENY-VADI-EVDSKQVELALWDTAGQEDYDRL   69 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------~~~~~~-~~~~-~~~~~~~~~~l~D~~g~~~~~~~   69 (192)
                      ...+||+++|++|+|||||++.+.+. +...+.+           +....+ ...+ ..++..+.+.+|||||++.+...
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   90 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS   90 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence            35799999999999999999766554 4333222           222111 1122 34567889999999999999999


Q ss_pred             ccccCCCCCEEEEEEECC------ChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH
Q psy14754         70 RPLSYPDTDVILMCFSID------SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE  143 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  143 (192)
                      +..+++.+|++|+|||++      +.+++..+. .|+..+....++.|+++|+||+|+..              ....++
T Consensus        91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~  155 (198)
T 3t1o_A           91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPD--------------ALPVEM  155 (198)
T ss_dssp             HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTT--------------CCCHHH
T ss_pred             HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhccc--------------ccCHHH
Confidence            999999999999999999      445666663 57766655557899999999999865              256777


Q ss_pred             HHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        144 GRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       144 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +.++++.++..+++++||+++.|++++|++|.+.+.++.++
T Consensus       156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            88888888755999999999999999999999999877554

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=2.7e-32  Score=191.93  Aligned_cols=165  Identities=30%  Similarity=0.514  Sum_probs=137.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|+.+.+...+.++.+ +........+...+.+.+|||||++.+...+..+++.+|+++
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   92 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   92 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence            3679999999999999999999887776666555553 444556677888999999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|||++++.++..+. .|+..+....++.|+++|+||+|+.....             . .+...+++..+ ++++++||
T Consensus        93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-------------~-~~~~~~~~~~~-~~~~~~Sa  156 (221)
T 3gj0_A           93 IMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV-------------K-AKSIVFHRKKN-LQYYDISA  156 (221)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCSS-------------C-GGGCCHHHHHT-CEEEECBG
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCccccccc-------------c-HHHHHHHHHcC-CEEEEEeC
Confidence            999999999999985 78888888878999999999999975321             1 13334556666 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        162 KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +++.|++++|++|.+.+.....
T Consensus       157 ~~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          157 KSNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             GGTBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999887653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=3.8e-32  Score=188.06  Aligned_cols=170  Identities=18%  Similarity=0.220  Sum_probs=123.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ....||+|+|++|+|||||+++|.+..+.. .+.++.+... ..  ++...+.+.+|||||++.+...+..+++.+|++|
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   91 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ET--FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI   91 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EE--EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EE--EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence            468899999999999999999999998877 5555554222 22  3345678999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhh-----C---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HHHHHcC
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHF-----C---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AMAQKIN  152 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~-----~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  152 (192)
                      +|||+++++++..+...+...+...     .   ++.|+++|+||+|+..........         ..... .+++..+
T Consensus        92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~~~~~~~~~~~  162 (199)
T 4bas_A           92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELV---------EILDLTTLMGDHP  162 (199)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHH---------HHHTHHHHHTTSC
T ss_pred             EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHH---------HHhcchhhccCCe
Confidence            9999999999998864444443321     1   279999999999997642211000         00001 1112333


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHhhhcccc
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAALQVKKKK  185 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~  185 (192)
                       ++++++||+++.|++++|++|.+.+.+..++.
T Consensus       163 -~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~  194 (199)
T 4bas_A          163 -FVIFASNGLKGTGVHEGFSWLQETASRQSGKA  194 (199)
T ss_dssp             -EEEEECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred             -eEEEEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence             68999999999999999999999998876543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.98  E-value=5.3e-31  Score=181.58  Aligned_cols=166  Identities=25%  Similarity=0.369  Sum_probs=127.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCC--CCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-ccccccccCCCCCE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQ--FPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-YDRLRPLSYPDTDV   79 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~   79 (192)
                      ...+||+++|++|+|||||+++|.+..  +...+.+++.+.....+.+++..+.+.+|||+|... +...+..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            457899999999999999999999633  333333333344456667888889999999999776 45566667788999


Q ss_pred             EEEEEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754         80 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL  157 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
                      +++|||+++.++++... .|...+...  .++.|+++|+||+|+..            .+.+...++..++..++ .+++
T Consensus        84 ~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~------------~r~v~~~~~~~~a~~~~-~~~~  149 (192)
T 2cjw_A           84 YLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVR------------XREVSVSEGRAXAVVFD-XKFI  149 (192)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CEEE
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhc------------cccccHHHHHHHHHHhC-CceE
Confidence            99999999999999885 566655543  24799999999999865            24456677777777777 5899


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        158 ECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ++||++|.|++++|+++.+.+....
T Consensus       150 e~SA~~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          150 ETSAAVQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             EeccccCCCHHHHHHHHHHHHHhhc
Confidence            9999999999999999999886554

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.98  E-value=2.9e-33  Score=193.88  Aligned_cols=164  Identities=31%  Similarity=0.613  Sum_probs=130.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV  111 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence            469999999999999999999999888777666655443 5566778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+...+...+++.++ ++++++||
T Consensus       112 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vSA  177 (199)
T 3l0i_B          112 VYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETSA  177 (199)
T ss_dssp             CC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--------------CCCCSCC-CHHHHTTT-CCBCCCCC
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCcc------------ccCCHHHHHHHHHHcC-CeEEEEEC
Confidence            99999999999885 6888776654 47999999999999753            3344455667787777 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++.|++++|++|.+.+.++
T Consensus       178 ~~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          178 KNATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             ---HHHHHHHHHHTTTTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999998877653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=7.2e-32  Score=189.35  Aligned_cols=167  Identities=23%  Similarity=0.383  Sum_probs=135.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-EEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ..+||+++|++|+|||||+++|++..+...+.++.+.... ..... .+..+.+.+|||||++.+...+..+++.+|++|
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI   89 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence            5799999999999999999999998887666555544332 22222 334488999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+..            .+.+.......++...+ ++++++|
T Consensus        90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S  155 (218)
T 4djt_A           90 LFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN------------RQKISKKLVMEVLKGKN-YEYFEIS  155 (218)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----------------CCHHHHHHHTTTCC-CEEEEEB
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc------------ccccCHHHHHHHHHHcC-CcEEEEe
Confidence            999999999999885 7777776554 3599999999999865            24566677777777777 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        161 AKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      |++|.|++++|++|.+.+......
T Consensus       156 a~~g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          156 AKTAHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             TTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred             cCCCCCHHHHHHHHHHHHhccccc
Confidence            999999999999999999876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.6e-31  Score=180.57  Aligned_cols=166  Identities=16%  Similarity=0.245  Sum_probs=121.4

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ....+||+++|++|+|||||+++|.++.+... .++.+. ....+.+.  ...+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~-~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGF-NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSE-EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCc-CCcCcc-ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            34679999999999999999999998887543 333322 22333444  578999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +|+|+++++++......+...+... ..+.|+++|+||+|+...........         ......+...+ ++++++|
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~S  149 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMAN---------SLGLPALKDRK-WQIFKTS  149 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHH---------HHTGGGCTTSC-EEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHH---------HhCchhccCCc-eEEEECc
Confidence            9999999988888864444444332 25899999999999976421110000         00000111223 5899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhh
Q psy14754        161 AKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |+++.|++++|+++.+.+.++
T Consensus       150 a~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          150 ATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHHHHhhc
Confidence            999999999999999988654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=7.9e-31  Score=181.52  Aligned_cols=157  Identities=22%  Similarity=0.317  Sum_probs=113.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++.++.+.. +.++.... ...+.+++  ..+.+|||||++.++..+..+++.+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            457899999999999999999999887643 33433332 33444554  789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----------
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----------  150 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  150 (192)
                      |+|+++++++.... .|+..+...  ..+.|+++|+||+|+...              ...++..++...          
T Consensus        99 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~  163 (198)
T 1f6b_A           99 LVDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPEA--------------ISEERLREMFGLYGQTTGKGSV  163 (198)
T ss_dssp             EEETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTTC--------------CCHHHHHHHHTCTTTCCCSSCC
T ss_pred             EEECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCcccc--------------CCHHHHHHHhCccccccccccc
Confidence            99999999998885 455544332  358999999999998652              233344444331          


Q ss_pred             ------cCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        151 ------INAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       151 ------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                            ....+++++||++|+|++++|++|.+.+
T Consensus       164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                  1236899999999999999999997653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.4e-31  Score=183.93  Aligned_cols=166  Identities=20%  Similarity=0.310  Sum_probs=122.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+|+|++|+|||||+++|.+..+...+.++.+.... .  +....+.+.+||+||++.+...+..+++.+|++++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-K--ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-E--EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-E--EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            35799999999999999999999999887666665554432 2  23345789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|++++++++.+...+...+... ..+.|+++|+||+|+............+..         ..... ..++++++||
T Consensus        97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~SA  166 (188)
T 1zd9_A           97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL---------SAIQD-REICCYSISC  166 (188)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG---------GGCCS-SCEEEEECCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhCh---------hhhcc-CCeeEEEEEC
Confidence            999999999988864444444332 258999999999999763211110000000         00011 2258999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++.|++++|++|.+.+...
T Consensus       167 ~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          167 KEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             TTCTTHHHHHHHHHHTCC--
T ss_pred             CCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999887654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=3.6e-30  Score=177.10  Aligned_cols=156  Identities=21%  Similarity=0.336  Sum_probs=117.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++.++.+... .++.... ...+.+++  ..+.+|||||++.++..+..+++.+|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-CCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-ccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            4578999999999999999999999887542 3333332 33444554  789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh--hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----------
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----------  150 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  150 (192)
                      |+|++++++++... .|+..+..  ...+.|+++|+||+|+....              ..++..+....          
T Consensus        97 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~  161 (190)
T 1m2o_B           97 LVDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNAV--------------SEAELRSALGLLNTTGSQRIE  161 (190)
T ss_dssp             EEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTCC--------------CHHHHHHHTTCSSCCC---CC
T ss_pred             EEECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcCCC--------------CHHHHHHHhCCcccccccccc
Confidence            99999999999885 45544433  23589999999999996522              22222222211          


Q ss_pred             -cCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        151 -INAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       151 -~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                       ...++++++||++|.|++++|++|.+.
T Consensus       162 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          162 GQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             SSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence             123689999999999999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.9e-30  Score=176.37  Aligned_cols=161  Identities=17%  Similarity=0.262  Sum_probs=120.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCC-CCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQ-FPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...+||+++|++|+|||||+++|.+.. +...+.++.+ .....+.++  +..+.+|||||++.+...+..+++.+|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            468999999999999999999999887 4444444443 223333333  478999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH--Hc--CCc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ--KI--NAF  154 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~  154 (192)
                      +|+|++++.++..+...+........   .+.|+++|+||+|+...              ...++..+...  .+  ..+
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~  161 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--------------VTSVKVSQLLCLENIKDKPW  161 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSCE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--------------CCHHHHHHHhChhhccCCce
Confidence            99999999999888644444443322   48999999999999653              12333333332  11  136


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++++||+++.|++++|++|.+.+.+
T Consensus       162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          162 HICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            89999999999999999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=4.3e-31  Score=177.39  Aligned_cols=155  Identities=19%  Similarity=0.293  Sum_probs=115.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|+|||||++++.++.+... .|+.+ .....  +......+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-CCCSS-CCEEE--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc-cCcCc-eeEEE--EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            5899999999999999999998877643 44333 12222  33345789999999999999888889999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhh--hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH-HH----HHcCCceEEE
Q psy14754         86 IDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MA----QKINAFAYLE  158 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~  158 (192)
                      +++++++.... .|+..+..  ..++.|+++|+||+|+.+...              ..+... +.    ... .+++++
T Consensus        77 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~  140 (164)
T 1r8s_A           77 SNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAMN--------------AAEITDKLGLHSLRHR-NWYIQA  140 (164)
T ss_dssp             TTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCSSC-CEEEEE
T ss_pred             CCCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCCCC--------------HHHHHHHhCcccccCc-cEEEEE
Confidence            99999998885 45544433  235899999999999966321              111111 11    111 257999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhh
Q psy14754        159 CSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      +||+++.|++++|++|.+.+..
T Consensus       141 ~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          141 TCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             CBTTTTBTHHHHHHHHHHHC--
T ss_pred             cccCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999988754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.1e-30  Score=175.86  Aligned_cols=163  Identities=18%  Similarity=0.265  Sum_probs=118.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||+++|.++.+. .+.++.+. ....+.++  +..+.+|||||++.+...+..+++.+|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-NVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS-SCEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc-ceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            46899999999999999999999988776 44444432 23334444  4789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAY  156 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  156 (192)
                      |+|++++++++... .|+..+...  ..+.|+++|+||+|+....              ..++..+....    ...+++
T Consensus        90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~  154 (187)
T 1zj6_A           90 VVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKECM--------------TVAEISQFLKLTSIKDHQWHI  154 (187)
T ss_dssp             EEETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTCC--------------CHHHHHHHHTGGGCCSSCEEE
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCCC--------------CHHHHHHHhChhhhcCCCcEE
Confidence            99999999999886 455555443  3589999999999996531              12222222211    112589


Q ss_pred             EEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        157 LECSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +++||++|.|+++++++|.+.+......
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          155 QACCALTGEGLCQGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHCC----
T ss_pred             EEccCCCCcCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999988766543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=3.5e-30  Score=176.44  Aligned_cols=161  Identities=16%  Similarity=0.245  Sum_probs=120.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++.++. ...+.++.+.. ...+.++  ...+.+|||||++.+...+..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            467999999999999999999999887 44445544422 3333443  5789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----HcCCceEE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KINAFAYL  157 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  157 (192)
                      |+|++++++++.+...+...+... .++.|+++|+||+|+.....              .++..+...    ....++++
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~~  157 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--------------CNAIQEALELDSIRSHHWRIQ  157 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--------------HHHHHHHhChhhccCCceEEE
Confidence            999999999988854343443331 35899999999999976321              111111111    01235899


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        158 ECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++||+++.|++++|+++.+.+.+.
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          158 GCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999887653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=1.2e-30  Score=178.15  Aligned_cols=160  Identities=19%  Similarity=0.306  Sum_probs=116.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||++++.+..+.. +.++.+. ....+.++  +..+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTE-EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCCe-EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            568999999999999999999999875432 2333321 22333444  5789999999999999888889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHH-hh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----HcCCceE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEV-KH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KINAFAY  156 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~-~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  156 (192)
                      |+|+++++++.... .|+..+ .. ...+.|+++|+||+|+.....              .++..+...    ....+++
T Consensus        90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~  154 (181)
T 1fzq_A           90 VIDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTAAP--------------ASEIAEGLNLHTIRDRVWQI  154 (181)
T ss_dssp             EEETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEE
T ss_pred             EEECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccCCC--------------HHHHHHHhCchhccCCceEE
Confidence            99999999988875 444443 32 235799999999999976422              111111110    0112589


Q ss_pred             EEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        157 LECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++||++|+|++++|+++.+.+.+.
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          155 QSCSALTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTC---
T ss_pred             EEccCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999887654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=5.4e-29  Score=172.41  Aligned_cols=167  Identities=33%  Similarity=0.557  Sum_probs=137.3

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDV   79 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~   79 (192)
                      |....++|+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+++
T Consensus         1 m~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~   80 (199)
T 2f9l_A            1 MYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG   80 (199)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred             CCcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence            667789999999999999999999999988776666554333 4566778888999999999999998888888899999


Q ss_pred             EEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         80 ILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      +++|+|+++..++..+. .|...+.... .+.|+++++||+|+...            +.....+++.++...+ +.+++
T Consensus        81 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~~d  146 (199)
T 2f9l_A           81 ALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNN-LSFIE  146 (199)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEE
T ss_pred             EEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CeEEE
Confidence            99999999998888774 5766665443 47899999999999652            3445667788888777 58999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhh
Q psy14754        159 CSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +||+++.|++++|++|.+.+.+.
T Consensus       147 ~Sal~~~~i~~l~~~l~~~~~~~  169 (199)
T 2f9l_A          147 TSALDSTNVEEAFKNILTEIYRI  169 (199)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=8.9e-31  Score=180.45  Aligned_cols=159  Identities=16%  Similarity=0.263  Sum_probs=113.6

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      ...++||+++|++|+|||||++++.++.+.. +.++.+ .....+..  ....+.+||+||++.+...+..+++.+|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3568999999999999999999999887653 233322 11222333  4578999999999999999888999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhh--hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH-HH----HHcCCc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MA----QKINAF  154 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~  154 (192)
                      +|+|+++++++.... .|+..+..  ..++.|+++|+||+|+.....              ..+..+ +.    ... .+
T Consensus       102 lv~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~-~~  165 (192)
T 2b6h_A          102 FVVDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNAMP--------------VSELTDKLGLQHLRSR-TW  165 (192)
T ss_dssp             EEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCSSC-CE
T ss_pred             EEEECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCCCC--------------HHHHHHHhCcccccCC-ce
Confidence            999999999998885 45544432  225799999999999965321              111111 11    111 25


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++++||++|.|++++|++|.+.+.+
T Consensus       166 ~~~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          166 YVQATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence            79999999999999999999988753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2.8e-30  Score=176.40  Aligned_cols=160  Identities=18%  Similarity=0.232  Sum_probs=116.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++.++.+ ..+.++.+. ....+.++  +..+.+||+||++.+...+..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~-~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF-NVETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC-CEEEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc-ceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999998776 233333332 22333443  3789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAY  156 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  156 (192)
                      |+|++++++++... .|+..+...  ..+.|+++|+||+|+.....              ..+..+....    ...+++
T Consensus        92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~~~~  156 (183)
T 1moz_A           92 VVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGALS--------------ASEVSKELNLVELKDRSWSI  156 (183)
T ss_dssp             EEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--------------HHHHHHHTTTTTCCSSCEEE
T ss_pred             EEECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCCCC--------------HHHHHHHhCcccccCCceEE
Confidence            99999998888885 455544433  35899999999999966321              1222221111    112589


Q ss_pred             EEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        157 LECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++||+++.|+++++++|.+.+.+.
T Consensus       157 ~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          157 VASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             EEccCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999999988654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=3.5e-30  Score=175.84  Aligned_cols=157  Identities=21%  Similarity=0.330  Sum_probs=116.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ...+||+++|++|+|||||+++|.+..+ ..+.++.+.. ...+.++  +..+.+||+||++.+...+..+++.+|++++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEET--TEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999999887 3333333322 2333444  3789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceEE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAYL  157 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  157 (192)
                      |+|++++++++.+...+....... ..+.|+++|+||+|+.....              ..+..+....    ...++++
T Consensus        95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~~~~~  160 (181)
T 2h17_A           95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--------------VAEISQFLKLTSIKDHQWHIQ  160 (181)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC--------------HHHHHHHhCcccccCCceEEE
Confidence            999999989988864444444321 35899999999999965321              1222221110    1125899


Q ss_pred             EeccCCcCCHHHHHHHHHHH
Q psy14754        158 ECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      ++||+++.|++++|++|.+.
T Consensus       161 ~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          161 ACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             ECBTTTTBTHHHHHHHHHTC
T ss_pred             EccCCCCcCHHHHHHHHHhh
Confidence            99999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=5.6e-30  Score=175.92  Aligned_cols=166  Identities=15%  Similarity=0.246  Sum_probs=120.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++.++.+.. +.++.+ .....+..+  ...+.+|||||++.+...+..+++.+|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            468999999999999999999998877643 233332 222333343  5789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|+++++++......+...+... .++.|+++|+||+|+.......+....+.         .......+ ++++++||
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa  165 (189)
T 2x77_A           96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLG---------VSSIMNRT-WTIVKSSS  165 (189)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTT---------GGGCCSSC-EEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhC---------hhhccCCc-eEEEEccC
Confidence            999999988888764444444332 35899999999999976422111000000         00111122 58999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhc
Q psy14754        162 KSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +++.|++++++++.+.+.+.+
T Consensus       166 ~~~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          166 KTGDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             TTCTTHHHHHHHHHHHHHHTC
T ss_pred             CCccCHHHHHHHHHHHHHhcc
Confidence            999999999999999886653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=1e-30  Score=180.64  Aligned_cols=167  Identities=16%  Similarity=0.268  Sum_probs=119.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEEC-CeEEEEEEEeCCCCCcccccc---cccCCCC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVD-SKQVELALWDTAGQEDYDRLR---PLSYPDT   77 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~---~~~~~~~   77 (192)
                      ...+||+++|++|+|||||++++.+..... ...... ........+. +..+.+.+||+||++.|....   ..+++.+
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   96 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT   96 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence            468999999999999999999887753332 211111 1112222232 566789999999999987766   7888999


Q ss_pred             CEEEEEEECCCh--hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----Hc
Q psy14754         78 DVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KI  151 (192)
Q Consensus        78 ~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  151 (192)
                      |++|+|||++++  +++..+. .|+..+....++.|+++|+||+|+..+......     .+.+......++++    .+
T Consensus        97 ~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           97 GALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET-----QRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             SEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH-----HHHHHHHHHHHHHHTTCTTS
T ss_pred             CEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHH-----HhHHHHHHHHHHHHhhhhcC
Confidence            999999999997  5555553 566655555679999999999998753221111     12344455666776    44


Q ss_pred             CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        152 NAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      + ++++++||++ .|++++|+.+.+.+
T Consensus       171 ~-~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 H-LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             C-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             C-cceEEEEech-hhHHHHHHHHHHHh
Confidence            5 6999999999 99999999998875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=1.1e-28  Score=167.63  Aligned_cols=163  Identities=21%  Similarity=0.267  Sum_probs=117.0

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDV   79 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~   79 (192)
                      |....++|+++|++|+|||||+++|.+..+...+.++.+... ...+..++  ..+.+|||||++.+...+...++.+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            345789999999999999999999999888766555443322 33344454  457899999999999999999999999


Q ss_pred             EEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH-------HcC
Q psy14754         80 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ-------KIN  152 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  152 (192)
                      +++|+|++++......  .++..+..  .+.|+++|+||+|+.....               .+......       .++
T Consensus        82 ~i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~~---------------~~~~~~~~~~~~~~~~~~  142 (178)
T 2lkc_A           82 VILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEANP---------------DRVMQELMEYNLVPEEWG  142 (178)
T ss_dssp             EEEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSCH---------------HHHHHHHTTTTCCBTTTT
T ss_pred             EEEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCCH---------------HHHHHHHHhcCcChhHcC
Confidence            9999999884221111  12222222  3799999999999976321               11111111       111


Q ss_pred             -CceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        153 -AFAYLECSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       153 -~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                       ..+++++||+++.|++++|++|.+.+...+..
T Consensus       143 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~  175 (178)
T 2lkc_A          143 GDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK  175 (178)
T ss_dssp             SSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred             CcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence             25899999999999999999999887765543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=8.1e-30  Score=178.40  Aligned_cols=173  Identities=14%  Similarity=0.201  Sum_probs=116.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCe-EEEEEEEeCCCCCcccc-cccccCCCCCEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSK-QVELALWDTAGQEDYDR-LRPLSYPDTDVI   80 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~   80 (192)
                      ..++||+++|++|+|||||+++|.+..+...+.++.....  .+.+++. .+.+.+|||||++.+.. .+..+++.+|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            4689999999999999999999999988776554332222  2444443 68899999999999887 677788999999


Q ss_pred             EEEEECCChh-hhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhc----------cCCC--------
Q psy14754         81 LMCFSIDSPD-SLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKM----------KQEP--------  138 (192)
Q Consensus        81 i~v~d~~~~~-~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~----------~~~~--------  138 (192)
                      ++|+|+++.. ++....+.|...+...   ..+.|+++|+||+|+............+          ....        
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~  162 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS  162 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence            9999999854 4555555666655441   3478999999999998754322111100          0001        


Q ss_pred             ----CCHHHHHHHHHHcC--CceEEEeccCCc------CCHHHHHHHHHHH
Q psy14754        139 ----VKPEEGRAMAQKIN--AFAYLECSAKSK------EGVREVFETATRA  177 (192)
Q Consensus       139 ----~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~gi~~~~~~i~~~  177 (192)
                          ....++..|+....  .++|+++||++|      .|++++|++|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                11111112221111  468999999999      9999999999875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.6e-29  Score=187.14  Aligned_cols=164  Identities=19%  Similarity=0.292  Sum_probs=116.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+|+|++|+|||||+++|.+..+.... ++.... ..  .++...+.+.+|||||++.+...+..+++.+|++|+|
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EE--EEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EE--EEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            5689999999999999999999988764432 222211 12  2333457899999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      ||++++.++..+...|...+... .++.|++||+||+|+............+...         .... ..++++++||+
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~---------~~~~-~~~~~~~vSAk  309 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRH-RNWYIQATCAT  309 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCT---------TCCS-SCEEEEECBTT
T ss_pred             EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchh---------hhhc-CCCEEEEEECC
Confidence            99999999998876666665543 2589999999999997643211111111000         0011 22589999999


Q ss_pred             CcCCHHHHHHHHHHHHhhh
Q psy14754        163 SKEGVREVFETATRAALQV  181 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~  181 (192)
                      +|.|++++|++|.+.+.+.
T Consensus       310 ~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          310 SGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             TTBTHHHHHHHHHHHHTC-
T ss_pred             CCcCHHHHHHHHHHHHHhc
Confidence            9999999999999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=3.3e-30  Score=176.46  Aligned_cols=168  Identities=22%  Similarity=0.343  Sum_probs=115.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC--CCCCcccCceeeee-eEEEEE---CCeEEEEEEEeCCCCCcccccccccCCCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD--QFPEVYVPTVFENY-VADIEV---DSKQVELALWDTAGQEDYDRLRPLSYPDTD   78 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~   78 (192)
                      ++||+++|++|+|||||+++|.+.  .+...+.++.+..+ ...+..   +...+.+.+||++|++.+...+..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  34343444443322 222221   235678999999999999888888888999


Q ss_pred             EEEEEEECCCh-hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc---
Q psy14754         79 VILMCFSIDSP-DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF---  154 (192)
Q Consensus        79 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  154 (192)
                      ++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+........         ........+++.++..   
T Consensus        82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  151 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQRKA---------CMSKITKELLNKRGFPAIR  151 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHH---------HHHHHHHHTTTCTTSCEEE
T ss_pred             EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchhhHH---------HHHHHHHHHHHhcCCcchh
Confidence            99999999997 478877 478887776667899999999999865211000         0012234455445531   


Q ss_pred             eEEEeccCCcC-CHHHHHHHHHHHHhhhc
Q psy14754        155 AYLECSAKSKE-GVREVFETATRAALQVK  182 (192)
Q Consensus       155 ~~~~~Sa~~~~-gi~~~~~~i~~~~~~~~  182 (192)
                      +++++||+++. |++++++.|.+.+...+
T Consensus       152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          152 DYHFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             EEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             heEEEecccCchhHHHHHHHHHHHHhccc
Confidence            38999999996 99999999998877644

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=8.4e-29  Score=174.90  Aligned_cols=167  Identities=17%  Similarity=0.152  Sum_probs=114.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccc---------ccccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYD---------RLRPL   72 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~   72 (192)
                      ...++|+++|++|+|||||+++|++..+.....+..+... ......  ....+.+|||||+....         ..+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4679999999999999999999999876532222222111 112222  23679999999984321         11123


Q ss_pred             cCCCCCEEEEEEECCChhhhhch-hhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHH---HHHHHH
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENI-PEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPE---EGRAMA  148 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  148 (192)
                      .+..+|++|+|+|++++.++... ...|+..+....++.|+++|+||+|+...            +.+...   ....++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~  172 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM------------DSLSIDNKLLIKQIL  172 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--------------CCCHHHHHHHHHHH
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc------------hhhHHHHHHHHHHHH
Confidence            46778999999999998776522 12466666665568999999999999763            223332   344555


Q ss_pred             HHcC-CceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        149 QKIN-AFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       149 ~~~~-~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ...+ ..+++++||++|.|++++|++|.+.+...+.
T Consensus       173 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          173 DNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             HHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence            5543 2589999999999999999999999877653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=2.4e-27  Score=163.16  Aligned_cols=161  Identities=32%  Similarity=0.535  Sum_probs=134.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++|+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+...++.++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            458999999999999999999999988777666665443 4566778888899999999999998888888889999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|.++..+++.+. .|...+.... .+.|+++++||+|+...            +......++.++...+ +.++++||
T Consensus       108 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~ld~Sa  173 (191)
T 1oix_A          108 VYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNG-LSFIETSA  173 (191)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence            99999998888774 5766655433 47899999999999652            3445677888888877 58999999


Q ss_pred             CCcCCHHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRAA  178 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~  178 (192)
                      +++.|++++|+.|.+.+
T Consensus       174 ld~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          174 LDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=1.8e-28  Score=165.04  Aligned_cols=153  Identities=14%  Similarity=0.150  Sum_probs=109.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCccccc------ccccCC-
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRL------RPLSYP-   75 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~~-   75 (192)
                      .+++|+++|++|+|||||+++|.+..+.....++.+. .....+.+++  ..+.+|||||+..+...      ...+++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            4689999999999999999999987765444443322 2233333443  57999999999877532      233443 


Q ss_pred             -CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754         76 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF  154 (192)
Q Consensus        76 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (192)
                       .+|++++|+|+++.+..    ..|...+...  +.|+++|+||+|+...            +.+.. +...+++.++ .
T Consensus        80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~------------~~~~~-~~~~~~~~~~-~  139 (165)
T 2wji_A           80 EKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKS------------LGIEI-DVDKLEKILG-V  139 (165)
T ss_dssp             HCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHH------------TTCCC-CHHHHHHHHT-S
T ss_pred             CCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccc------------cChhh-HHHHHHHHhC-C
Confidence             78999999999986433    2455555543  7999999999998642            11221 3566777777 5


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        155 AYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      +++++||++|.|++++|+++.+.+
T Consensus       140 ~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          140 KVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHh
Confidence            999999999999999999998865

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=1.6e-28  Score=180.43  Aligned_cols=168  Identities=14%  Similarity=0.265  Sum_probs=124.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc-----cccccccCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDY-----DRLRPLSYP   75 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~~   75 (192)
                      ..+||+++|++|+|||||+++++++.....   +.++.... .....+.+ .+.+.+||+||++.+     ...+..+++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~-~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVE-HSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEE-EEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceE-EEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            468999999999999999999998743322   22222222 22333333 678999999999988     677888889


Q ss_pred             CCCEEEEEEECCChhhhhchhhhh---HHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         76 DTDVILMCFSIDSPDSLENIPEKW---TPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      .+|++|+|||++++++++.+. .|   +..+....++.|+++|+||+|+..+.......      ....+++.++++.++
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~------~v~~~~~~~~~~~~g  152 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELF------QIMMKNLSETSSEFG  152 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHH------HHHHHHHHHHHHTTT
T ss_pred             cCCEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHH------HHHHHHHHHHHHHcC
Confidence            999999999999999888874 44   44445556789999999999987632211000      133466778888887


Q ss_pred             C--ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        153 A--FAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       153 ~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .  .+++++||++ .|+.++|..+.+.+...
T Consensus       153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~  182 (307)
T 3r7w_A          153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIPN  182 (307)
T ss_dssp             CCSCEEEECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred             CCCeEEEEeeecC-ChHHHHHHHHHHHHcCC
Confidence            3  7999999999 89999999988876543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.9e-28  Score=175.70  Aligned_cols=162  Identities=18%  Similarity=0.230  Sum_probs=117.0

Q ss_pred             ccceeEEEEcCC---------CCchhHHHHHHhh---CCCCCcccCce-eeee-eEEE--------------EECCeEEE
Q psy14754          3 AIRKKLVIVGDG---------ACGKTCLLIVFSK---DQFPEVYVPTV-FENY-VADI--------------EVDSKQVE   54 (192)
Q Consensus         3 ~~~~~i~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~-~~~~--------------~~~~~~~~   54 (192)
                      ...+||+++|.+         |+|||||+++|.+   ..+...+.+++ +..+ ...+              ..++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            457999999999         9999999999998   45555555543 1111 1111              13456788


Q ss_pred             EEEEe-----------------------CCCCCcccccccccCC---------------------CCCEEEEEEECCCh-
Q psy14754         55 LALWD-----------------------TAGQEDYDRLRPLSYP---------------------DTDVILMCFSIDSP-   89 (192)
Q Consensus        55 ~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~-   89 (192)
                      +.+||                       ++|++.|...+..+++                     ++|++|+|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       6677778888888877                     79999999999998 


Q ss_pred             -hhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCC
Q psy14754         90 -DSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEG  166 (192)
Q Consensus        90 -~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  166 (192)
                       .+++.+. .|+..+...  .++.|+++|+||+|+...            +.+  ++...++.....++++++||+++.|
T Consensus       177 ~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~------------~~v--~~~~~~~~~~~~~~~~e~SAk~g~g  241 (255)
T 3c5h_A          177 NRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVE------------RYI--RDAHTFALSKKNLQVVETSARSNVN  241 (255)
T ss_dssp             --CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCH------------HHH--HHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred             hhhHHHHH-HHHHHHHHHhccCCCCEEEEEEccccccc------------HHH--HHHHHHHHhcCCCeEEEEECCCCCC
Confidence             8998885 677766543  257999999999998542            111  3556666654346999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy14754        167 VREVFETATRAAL  179 (192)
Q Consensus       167 i~~~~~~i~~~~~  179 (192)
                      ++++|++|.+.+.
T Consensus       242 v~elf~~l~~~l~  254 (255)
T 3c5h_A          242 VDLAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988763

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=3.6e-28  Score=162.57  Aligned_cols=150  Identities=21%  Similarity=0.189  Sum_probs=102.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc-------cccccccCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY-------DRLRPLSYPD   76 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~   76 (192)
                      .||+++|++|+|||||++++.+..+... ..++.+ ......+...+  ..+.+|||||+..+       ...+...++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            5899999999999999999999875422 122222 22233344444  37899999998763       3334556789


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      +|++++|+|++++.+  .....+...+...  +.|+++|+||+|+....                ++..+++ .++..++
T Consensus        80 ~~~~i~v~d~~~~~~--~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~----------------~~~~~~~-~~~~~~~  138 (161)
T 2dyk_A           80 AEVVLFAVDGRAELT--QADYEVAEYLRRK--GKPVILVATKVDDPKHE----------------LYLGPLY-GLGFGDP  138 (161)
T ss_dssp             CSEEEEEEESSSCCC--HHHHHHHHHHHHH--TCCEEEEEECCCSGGGG----------------GGCGGGG-GGSSCSC
T ss_pred             CCEEEEEEECCCccc--HhHHHHHHHHHhc--CCCEEEEEECcccccch----------------HhHHHHH-hCCCCCe
Confidence            999999999998532  2222344444443  79999999999997631                1112233 3443379


Q ss_pred             EEeccCCcCCHHHHHHHHHHHH
Q psy14754        157 LECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      +++||+++.|++++|+++.+.+
T Consensus       139 ~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          139 IPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHC
T ss_pred             EEEecccCCChHHHHHHHHHhC
Confidence            9999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=2.6e-27  Score=173.94  Aligned_cols=164  Identities=18%  Similarity=0.105  Sum_probs=121.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCe-EEEEEEEeCCCCCccc----------cccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSK-QVELALWDTAGQEDYD----------RLRP   71 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~----------~~~~   71 (192)
                      +..-.|+++|.+|+|||||+|+|++..+......+.++........... +..+.+|||||+..+.          ..+.
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~   87 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK   87 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence            3567899999999999999999999887654333333332222222223 5789999999986654          3445


Q ss_pred             ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754         72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI  151 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (192)
                      ..++.+|++++|+|++++.+.... ..|...+...  +.|+++|+||+|+...            ..........+.+.+
T Consensus        88 ~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~------------~~~~~~~~~~l~~~~  152 (308)
T 3iev_A           88 QSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGP------------AKNVLPLIDEIHKKH  152 (308)
T ss_dssp             HHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSS------------GGGGHHHHHHHHHHC
T ss_pred             HHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCC------------HHHHHHHHHHHHHhc
Confidence            567789999999999987666665 3557776664  7999999999999732            223345556677776


Q ss_pred             -CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        152 -NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       152 -~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                       ...+++++||++|.|++++++++.+.+.+.
T Consensus       153 ~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          153 PELTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             TTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence             346899999999999999999999988654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=1.8e-28  Score=178.87  Aligned_cols=163  Identities=13%  Similarity=0.187  Sum_probs=116.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc---cccccCCCCCEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR---LRPLSYPDTDVI   80 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~~~~   80 (192)
                      ||+++|+.|+|||||++++.++.++..   ..++.+.... .  ++ ..+.+++|||+|+++|..   .+..++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~-~--v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE-H--FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE-E--EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE-E--Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            799999999999999998876654332   2333333322 1  22 347899999999999974   357889999999


Q ss_pred             EEEEECCChhhhhchhhhh---HHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCC
Q psy14754         81 LMCFSIDSPDSLENIPEKW---TPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INA  153 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  153 (192)
                      |+|||+++.  +....+.|   +..+....++.|+++++||+|+..+..+...     .+.+..+++.++++.    ++ 
T Consensus        77 IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~-----~R~V~~~~~~~la~~~~~~~~-  148 (331)
T 3r7w_B           77 VYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDA-----QRDIMQRTGEELLELGLDGVQ-  148 (331)
T ss_dssp             EEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHH-----HHHHHHHHHHTTSSSSCSCCC-
T ss_pred             EEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhH-----HHHhhHHHHHHHHhhcccccC-
Confidence            999999997  33333334   4444455678999999999999764321110     123445556666664    34 


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ++|++|||++ .+|.++|..+.+.+....
T Consensus       149 i~f~eTSAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          149 VSFYLTSIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             EEEECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             ceEEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence            6999999998 589999999998887653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.95  E-value=2.4e-27  Score=170.00  Aligned_cols=156  Identities=17%  Similarity=0.129  Sum_probs=114.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc------cccC--
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR------PLSY--   74 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~--   74 (192)
                      ...++|+++|++|+|||||+++|.+..+.....++.+. ......+...+..+.+|||||+..+...+      ..++  
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTV-EKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCC-EEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceE-EEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            45789999999999999999999987765333332222 22222233334789999999998876543      3333  


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF  154 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (192)
                      ..+|++++|+|+++.++..    .|...+...  +.|+++|+||+|+...            +.+. .....+++.++ +
T Consensus        82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~------------~~i~-~~~~~l~~~lg-~  141 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKK------------TGMK-IDRYELQKHLG-I  141 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHH------------TTCC-BCHHHHHHHHC-S
T ss_pred             cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCc------------cchH-HHHHHHHHHcC-C
Confidence            5899999999999865432    344455443  7999999999998652            1222 23567777787 5


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        155 AYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      |++++||++|.|++++|+++.+.+.
T Consensus       142 ~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          142 PVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            9999999999999999999998765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=4e-28  Score=166.56  Aligned_cols=159  Identities=17%  Similarity=0.207  Sum_probs=109.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC-----------CCcccccccccC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG-----------QEDYDRLRPLSY   74 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~~   74 (192)
                      +||+++|++|+|||||+++|.+..+...+.++.+. ........    .+.+|||||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc-eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999998877665554432 22223333    689999999           444555555555


Q ss_pred             CC-CCEEEEEEECCChhhhhchhhhhHHH---------Hhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH
Q psy14754         75 PD-TDVILMCFSIDSPDSLENIPEKWTPE---------VKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE  143 (192)
Q Consensus        75 ~~-~~~~i~v~d~~~~~~~~~~~~~~~~~---------~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  143 (192)
                      +. ++++++++++.+..++..+.+.|...         ... ...+.|+++|+||+|+....               .+.
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------------~~~  141 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---------------QEV  141 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---------------HHH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---------------HHH
Confidence            54 56555555555555665554444431         111 11479999999999987631               345


Q ss_pred             HHHHHHHcCC------ceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        144 GRAMAQKINA------FAYLECSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       144 ~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      ...+++.++.      .+++++||++|.|++++|+++.+.+.+.+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence            6667776663      2479999999999999999999988776544

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=2.4e-27  Score=163.27  Aligned_cols=161  Identities=17%  Similarity=0.229  Sum_probs=107.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC----------CCcccccccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG----------QEDYDRLRPL   72 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~~   72 (192)
                      ...+||+++|++|+|||||+++|++............+.........   ..+.+|||||          ++.+...+..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~   97 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRLVED   97 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence            35689999999999999999999998744332222222222222222   2578999999          4445444444


Q ss_pred             cCCC---CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754         73 SYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ  149 (192)
Q Consensus        73 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (192)
                      +++.   +|++++|+|+++..+....  .+...+...  +.|+++|+||+|+.....          .....++...++.
T Consensus        98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~  163 (195)
T 3pqc_A           98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE----------RAKKLEEHRKVFS  163 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG----------HHHHHHHHHHHHH
T ss_pred             HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH----------HHHHHHHHHHHHh
Confidence            4444   4999999999875332222  333334433  799999999999975322          1122344555666


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ..+.++++++||+++.|++++|++|.+.+.+
T Consensus       164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          164 KYGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             hcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            5565799999999999999999999988754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=1.6e-27  Score=164.32  Aligned_cols=158  Identities=13%  Similarity=0.152  Sum_probs=101.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCC----------CCcccccccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAG----------QEDYDRLRPL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~~   72 (192)
                      ..++|+++|++|+|||||+++|++..+.....++.+... ......+.   .+.+|||||          ++.+...+..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            578999999999999999999999875444333332222 22223332   589999999          4555555555


Q ss_pred             cCCCC---CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH-HH
Q psy14754         73 SYPDT---DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MA  148 (192)
Q Consensus        73 ~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  148 (192)
                      +++.+   |++++|+|++++.+....  .+...+..  .+.|+++|+||+|+........          ..++..+ +.
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~----------~~~~~~~~~~  164 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGKWDK----------HAKVVRQTLN  164 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGGHHH----------HHHHHHHHHT
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHHHHH----------HHHHHHHHHc
Confidence            55555   999999999987555443  23344443  3799999999999976322110          0112222 22


Q ss_pred             HHcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        149 QKINAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       149 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      . ....+++++||+++.|++++|++|.+.+.
T Consensus       165 ~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          165 I-DPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             C-CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             c-cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            1 12368999999999999999999988764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=3.6e-27  Score=185.07  Aligned_cols=163  Identities=21%  Similarity=0.297  Sum_probs=119.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE---------EECCeEEEEEEEeCCCCCccccccccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI---------EVDSKQVELALWDTAGQEDYDRLRPLS   73 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~D~~g~~~~~~~~~~~   73 (192)
                      ..++||+++|.+|+|||||++++.+..+...+.++.+.......         ..++....+.+||+||++.+...+..+
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~  118 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF  118 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence            35799999999999999999999998887666666554443221         112335789999999999999998889


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ++.+|++|+|+|+++.   +.. ..|...+....++.|+++|+||+|+...            +.+..++...+....+ 
T Consensus       119 l~~~d~ii~V~D~s~~---~~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~-  181 (535)
T 3dpu_A          119 MTRSSVYMLLLDSRTD---SNK-HYWLRHIEKYGGKSPVIVVMNKIDENPS------------YNIEQKKINERFPAIE-  181 (535)
T ss_dssp             HHSSEEEEEEECGGGG---GGH-HHHHHHHHHHSSSCCEEEEECCTTTCTT------------CCCCHHHHHHHCGGGT-
T ss_pred             ccCCcEEEEEEeCCCc---hhH-HHHHHHHHHhCCCCCEEEEEECCCcccc------------cccCHHHHHHHHHhcC-
Confidence            9999999999999865   333 5788888888778999999999999763            4455666777777776 


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .+++++||++|.|++++++.+.+.+....
T Consensus       182 ~~~~~vSA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          182 NRFHRISCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             TCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred             CceEEEecCcccCHHHHHHHHHHHHhccc
Confidence            48999999999999999999999887654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=7.7e-27  Score=158.04  Aligned_cols=153  Identities=22%  Similarity=0.251  Sum_probs=106.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc--------ccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR--------PLS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   73 (192)
                      ...+|+++|++|+|||||+++|.+..+.. ...++++ ......+.+++  ..+.+|||||+..+....        ...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            45799999999999999999999876432 1122222 22334445554  358999999986543211        124


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      ++.+|++++|+|++++.++..  ..|+..+.... .+.|+++|+||+|+......                   ++... 
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------------------~~~~~-  138 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETLG-------------------MSEVN-  138 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------------------EEEET-
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchhh-------------------hhhcc-
Confidence            678999999999999877653  35666655543 47999999999999642110                   00112 


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ..+++++||+++.|++++|++|.+.+..
T Consensus       139 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          139 GHALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            2589999999999999999999887643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=1.3e-26  Score=158.95  Aligned_cols=158  Identities=14%  Similarity=0.148  Sum_probs=113.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccc------cccccCC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDR------LRPLSYP   75 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~   75 (192)
                      +.+++|+++|++|+|||||+++|.+..+.....++.+. .....+...  +..+.+|||||+..+..      .+..++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            35789999999999999999999987654433333332 223333343  36899999999987752      2333443


Q ss_pred             --CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         76 --DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        76 --~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                        .++++++|+|.++.+   .. ..|...+..  .+.|+++|+||+|+....            .+. .....+++.++ 
T Consensus        83 ~~~~~~~i~v~d~~~~~---~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~------------~~~-~~~~~~~~~~~-  142 (188)
T 2wjg_A           83 NEKPDLVVNIVDATALE---RN-LYLTLQLME--MGANLLLALNKMDLAKSL------------GIE-IDVDKLEKILG-  142 (188)
T ss_dssp             HHCCSEEEEEEEGGGHH---HH-HHHHHHHHT--TTCCEEEEEECHHHHHHT------------TCC-CCHHHHHHHHT-
T ss_pred             ccCCCEEEEEecchhHH---HH-HHHHHHHHh--cCCCEEEEEEhhhccccc------------cch-HHHHHHHHHhC-
Confidence              589999999988643   33 345555554  379999999999986521            111 24566777777 


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .+++++||+++.|++++|+++.+.+....
T Consensus       143 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          143 VKVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            59999999999999999999999887655

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=6.5e-27  Score=168.64  Aligned_cols=155  Identities=16%  Similarity=0.160  Sum_probs=112.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc------cccccCC--
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR------LRPLSYP--   75 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--   75 (192)
                      ..++|+++|++|+|||||+|+|.+........++. +.......+.. +..+.+|||||+..+..      .+..++.  
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~-tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV-TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC-CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC-cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            46899999999999999999999876433333322 22233334455 66899999999987753      2333443  


Q ss_pred             CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      .+|++++|+|+++.++.    ..|...+...  +.|+++++||+|+...            +.+. .....+++.++ ++
T Consensus        80 ~~d~vi~V~D~t~~e~~----~~~~~~l~~~--~~p~ilv~NK~Dl~~~------------~~~~-~~~~~l~~~lg-~~  139 (272)
T 3b1v_A           80 RADSILNVVDATNLERN----LYLTTQLIET--GIPVTIALNMIDVLDG------------QGKK-INVDKLSYHLG-VP  139 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH----HHHHHHHHHT--CSCEEEEEECHHHHHH------------TTCC-CCHHHHHHHHT-SC
T ss_pred             CCCEEEEEecCCchHhH----HHHHHHHHhc--CCCEEEEEEChhhCCc------------CCcH-HHHHHHHHHcC-CC
Confidence            69999999999986543    2454444443  8999999999998652            1122 24566777777 59


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        156 YLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ++++||++|.|++++|+++.+.+..
T Consensus       140 vi~~SA~~g~gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          140 VVATSALKQTGVDQVVKKAAHTTTS  164 (272)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred             EEEEEccCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999887643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=1.1e-26  Score=169.74  Aligned_cols=158  Identities=20%  Similarity=0.214  Sum_probs=110.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCcc--------cccccccC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDY--------DRLRPLSY   74 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~   74 (192)
                      +..+|+++|++|+|||||+|+|++..+.... .+.++......+ ....+..+.+|||||....        .......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i-~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI-LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE-EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE-EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            4678999999999999999999998876432 222222212211 2233568999999998763        33445678


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH-cCC
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK-INA  153 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  153 (192)
                      +.+|++++|+|++++.+  .....+...+....++.|+++|+||+|+......                .....+. .+.
T Consensus        85 ~~ad~il~VvD~~~~~~--~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----------------~~~~~~~~~~~  146 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPT--PEDELVARALKPLVGKVPILLVGNKLDAAKYPEE----------------AMKAYHELLPE  146 (301)
T ss_dssp             SSCSEEEEEEETTSCCC--HHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH----------------HHHHHHHTSTT
T ss_pred             hcCCEEEEEEECCCCCC--hHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH----------------HHHHHHHhcCc
Confidence            89999999999988633  2333444566655567999999999998753210                1112222 333


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      .+++++||+++.|++++++.+.+.+.+
T Consensus       147 ~~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          147 AEPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             SEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence            578999999999999999999887644

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=4.7e-27  Score=165.28  Aligned_cols=167  Identities=12%  Similarity=0.123  Sum_probs=106.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeeeeEEEEEC-CeEEEEEEEeCCCCCc----------ccccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVD-SKQVELALWDTAGQED----------YDRLR   70 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~----------~~~~~   70 (192)
                      ...++|+++|.+|+|||||+++|++... .........+......... ..+..+.+|||||...          +....
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            3578999999999999999999999863 2221111122222222333 4456799999999533          22222


Q ss_pred             cccC---CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-H
Q psy14754         71 PLSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-A  146 (192)
Q Consensus        71 ~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~  146 (192)
                      ..++   ..+|++++|+|++++  +......|+..+...  +.|+++|+||+|+.........          ..... .
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~----------~~~~~~~  172 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRP--LTELDRRMIEWFAPT--GKPIHSLLTKCDKLTRQESINA----------LRATQKS  172 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSC--CCHHHHHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHH----------HHHHHHH
T ss_pred             HHHHhcCcCcCEEEEEEeCCCC--CCHHHHHHHHHHHhc--CCCEEEEEeccccCChhhHHHH----------HHHHHHH
Confidence            2233   347889999999875  333334566666653  7999999999999763221111          11111 2


Q ss_pred             HHHH-----cCCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        147 MAQK-----INAFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       147 ~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +...     ....+++++||+++.|+++++++|.+.+.....
T Consensus       173 l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          173 LDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             HHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence            2222     244689999999999999999999998876543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=2e-26  Score=164.97  Aligned_cols=150  Identities=13%  Similarity=0.187  Sum_probs=108.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccc----------cccccC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDR----------LRPLSY   74 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~   74 (192)
                      .+|+++|.+|+|||||+|+|.+..+.....++.+. .....+...+  ..+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998754433333332 2233334444  4889999999887764          233445


Q ss_pred             --CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         75 --PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        75 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                        +.+|++|+|+|+++.+...    .+...+...  +.|+++|+||+|+.....            . ......+.+.++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~----~l~~~l~~~--~~pvilv~NK~Dl~~~~~------------~-~~~~~~l~~~lg  140 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHL----YLTSQLFEL--GKPVVVALNMMDIAEHRG------------I-SIDTEKLESLLG  140 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHH----HHHHHHTTS--CSCEEEEEECHHHHHHTT------------C-EECHHHHHHHHC
T ss_pred             hhCCCCEEEEEeeCCCchhHH----HHHHHHHHc--CCCEEEEEEChhcCCcCC------------c-HHHHHHHHHHcC
Confidence              7899999999999865443    233334433  799999999999875321            1 112345667777


Q ss_pred             CceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        153 AFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                       +|++++||++|.|++++++++.+.
T Consensus       141 -~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 -CSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             -SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             -CCEEEEECCCCCCHHHHHHHHHhh
Confidence             599999999999999999999876

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=7.2e-27  Score=168.99  Aligned_cols=156  Identities=13%  Similarity=0.149  Sum_probs=110.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccc----------cc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLR----------PL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----------~~   72 (192)
                      .+++|+++|.+|+|||||+|+|++..+.....++.+.. ....+..  .+..+.+|||||+.++....          ..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC--SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe--CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            57899999999999999999999987544433333322 2223333  33578999999988876321          11


Q ss_pred             c--CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         73 S--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        73 ~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      +  .+.+|++++|+|+++.+...    .|...+...  +.|+++|+||+|+.....            . ......+.+.
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~~------------~-~~~~~~l~~~  140 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN------------I-RIEIDALSAR  140 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHTT------------E-EECHHHHHHH
T ss_pred             HHhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhhh------------H-HHHHHHHHHh
Confidence            1  26899999999999865432    344444444  799999999999865211            1 1124566677


Q ss_pred             cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        151 INAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++ ++++++||++|.|+++++++|.+.+...
T Consensus       141 lg-~~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          141 LG-CPVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             HT-SCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             cC-CCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            77 5999999999999999999998876543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=2.2e-25  Score=171.59  Aligned_cols=156  Identities=18%  Similarity=0.178  Sum_probs=96.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc--------ccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR--------PLS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   73 (192)
                      ..++|+++|++|+|||||+|+|++..... ...++++ +.....+.++  +..+.+|||||+..+...+        ...
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--g~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--KTMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET--TEEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            35889999999999999999999876432 2222222 2223344444  3679999999987765433        346


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ++.+|++++|+|++++.+++.. ..+...+.. ..+.|+++|+||+|+.....               .....+.+. +.
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~---------------~~~~~l~~~-~~  371 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDEL-TEIRELKAA-HPAAKFLTVANKLDRAANAD---------------ALIRAIADG-TG  371 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHH-CTTSEEEEEEECTTSCTTTH---------------HHHHHHHHH-HT
T ss_pred             cccCCEEEEEEECCCCcchhhh-HHHHHHHHh-cCCCCEEEEEECcCCCCccc---------------hhHHHHHhc-CC
Confidence            7899999999999998776543 233333332 23799999999999976422               111233333 12


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      .+++++||+++.|+++++++|.+.+.
T Consensus       372 ~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          372 TEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHh
Confidence            58999999999999999999999886

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=1.1e-25  Score=162.83  Aligned_cols=157  Identities=22%  Similarity=0.150  Sum_probs=111.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc------cccccC--
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR------LRPLSY--   74 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--   74 (192)
                      ..++|+++|++|+|||||+++|.+..+.....++.+... ...+...+  ..+.+|||||+..+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999999876443333333222 22333333  4589999999887765      333343  


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF  154 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (192)
                      ..+|++++|+|+++.+..    ..|...+... ...|+++|+||+|+.....            ... ....+.+.++ +
T Consensus        80 ~~~d~vi~v~D~~~~~~~----~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~------------~~~-~~~~l~~~lg-~  140 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMRN----LFLTLELFEM-EVKNIILVLNKFDLLKKKG------------AKI-DIKKMRKELG-V  140 (271)
T ss_dssp             TCCSEEEEEEEGGGHHHH----HHHHHHHHHT-TCCSEEEEEECHHHHHHHT------------CCC-CHHHHHHHHS-S
T ss_pred             cCCcEEEEEecCCcchhh----HHHHHHHHhc-CCCCEEEEEEChhcCcccc------------cHH-HHHHHHHHcC-C
Confidence            679999999999986321    1333333333 1399999999999865211            111 2556777777 5


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++++||++|.|++++++.+.+.+...
T Consensus       141 ~~~~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          141 PVIPTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             CEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999887554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=9.1e-26  Score=173.96  Aligned_cols=162  Identities=16%  Similarity=0.180  Sum_probs=112.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccC-ceeeeeeEEEEECCeEEEEEEEeCCC----------CCccccccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVP-TVFENYVADIEVDSKQVELALWDTAG----------QEDYDRLRP   71 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~   71 (192)
                      ..+||+++|.+|+|||||+++|++..... ...+ ++.+.....+..++.  .+.+|||||          ++.|...+.
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  271 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  271 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHH
Confidence            56899999999999999999999765322 2222 222333344455544  789999999          454544433


Q ss_pred             -ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         72 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        72 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                       ..++.+|++++|+|++++  +......|...+...  +.|+++|+||+|+...            +....++..+..+.
T Consensus       272 ~~~~~~ad~~llviD~~~~--~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~  335 (456)
T 4dcu_A          272 LKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDK------------DESTMKEFEENIRD  335 (456)
T ss_dssp             HHHHHHCSEEEEEEETTTC--CCHHHHHHHHHHHHT--TCEEEEEEECGGGSCC------------CSSHHHHHHHHHHH
T ss_pred             HHHHhhCCEEEEEEeCCCC--cCHHHHHHHHHHHHc--CCCEEEEEEChhcCCC------------chHHHHHHHHHHHH
Confidence             356789999999999875  333434666666653  7999999999999763            23333444444333


Q ss_pred             c----CCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        151 I----NAFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       151 ~----~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      .    +..+++++||++|.|++++|+.+.+.+....+
T Consensus       336 ~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          336 HFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             HCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             hcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            2    33689999999999999999999988766543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=6.2e-26  Score=174.00  Aligned_cols=161  Identities=14%  Similarity=0.143  Sum_probs=110.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCc-eeeeeeEEEEECCeEEEEEEEeCCCCCccc----------cccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPT-VFENYVADIEVDSKQVELALWDTAGQEDYD----------RLRP   71 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~   71 (192)
                      ..+||+++|++|+|||||+|+|++..... ...++ +.+.....+..++.  .+.+|||||+.+..          ....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            45899999999999999999999887532 21222 22223334455543  58999999974322          2211


Q ss_pred             -ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH-HHHHH
Q psy14754         72 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG-RAMAQ  149 (192)
Q Consensus        72 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  149 (192)
                       ..++.+|++++|+|++++.+.+..  .|...+...  +.|+++|+||+|+.+..            ....++. ..+.+
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~~~~  315 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKD------------ESTMKEFEENIRD  315 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCC------------TTHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcc------------hHHHHHHHHHHHH
Confidence             356789999999999998776664  466666543  89999999999997632            1211122 22222


Q ss_pred             Hc---CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        150 KI---NAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       150 ~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .+   ...+++++||++|.|++++|+.+.+.+....
T Consensus       316 ~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          316 HFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             HCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             hcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            22   3368999999999999999999998877543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=4.1e-25  Score=167.63  Aligned_cols=156  Identities=18%  Similarity=0.214  Sum_probs=111.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cC-ceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc-------ccC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VP-TVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP-------LSY   74 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~~   74 (192)
                      ..++|+++|++|+|||||+++|++..+.... .+ ++.......+..... ..+.+|||||+.++.....       ..+
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l  111 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVF  111 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence            5789999999999999999999988764222 22 222333444455443 2789999999988776533       367


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF  154 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (192)
                      +.+|++|+|+|++.    ......|+..+...  +.|+++|+||+|+.....            .  +...++++.++ +
T Consensus       112 ~~aD~vllVvD~~~----~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~--~~~~~l~~~~g-~  170 (423)
T 3qq5_A          112 YRADCGILVTDSAP----TPYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------E--ELKGLYESRYE-A  170 (423)
T ss_dssp             TSCSEEEEECSSSC----CHHHHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------T--HHHHHSSCCTT-C
T ss_pred             hcCCEEEEEEeCCC----hHHHHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------H--HHHHHHHHHcC-C
Confidence            88999999999832    22234677777766  899999999999976432            1  34445555556 5


Q ss_pred             eEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        155 AYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +++++||+++.|++++|++|.+.+.+.
T Consensus       171 ~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          171 KVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999999999999988543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.91  E-value=1.9e-24  Score=158.21  Aligned_cols=159  Identities=16%  Similarity=0.137  Sum_probs=108.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCC---------ccccccccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQE---------DYDRLRPLS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~   73 (192)
                      +..+|+++|++|+|||||+|+|++..+.... .+.++......+ +......+.+|||||+.         .+.......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi-~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI-HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE-EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEE-EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            4568999999999999999999998754321 222221111111 22234578999999987         345556678


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ++.+|++++|+|+++   +......+...+..  .+.|+++++||+|+.....            .......++.+.++.
T Consensus        86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~------------~~~~~l~~l~~~~~~  148 (301)
T 1ega_A           86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKA------------DLLPHLQFLASQMNF  148 (301)
T ss_dssp             CCCEEEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHH------------HHHHHHHHHHTTSCC
T ss_pred             HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHH------------HHHHHHHHHHHhcCc
Confidence            899999999999976   44433333334433  3799999999999865211            112333445555553


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      .+++++||+++.|++++++.+.+.+.+
T Consensus       149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          149 LDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            478999999999999999999877654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.6e-25  Score=157.01  Aligned_cols=149  Identities=17%  Similarity=0.168  Sum_probs=97.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCC---
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPD---   76 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~---   76 (192)
                      ...++|+++|++|+|||||+++|.+..+...   +.++.+.        ......+.+||+||++.+...+..+++.   
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   81 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK   81 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET--------TGGGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE--------EeeCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence            3578999999999999999999999876542   2222222        2244578999999999998888777766   


Q ss_pred             -CCEEEEEEECC-ChhhhhchhhhhHHHHhh----hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         77 -TDVILMCFSID-SPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        77 -~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                       +|++|+|+|++ +++++....+.+...+..    ...+.|+++|+||+|+............      ...+...++..
T Consensus        82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~------l~~~~~~~~~~  155 (218)
T 1nrj_B           82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA------LESEIQKVIER  155 (218)
T ss_dssp             GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH------HHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHH------HHHHHHHHHHH
Confidence             89999999999 778888776444343332    2358999999999999775332111000      02333444444


Q ss_pred             cCCceEEEeccCCcCC
Q psy14754        151 INAFAYLECSAKSKEG  166 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~g  166 (192)
                      .+ .+++++||+++.+
T Consensus       156 ~~-~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          156 RK-KSLNEVERKINEE  170 (218)
T ss_dssp             HH-HHHHC--------
T ss_pred             Hh-ccccccccccccc
Confidence            44 3666777776543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=1.8e-24  Score=166.03  Aligned_cols=154  Identities=19%  Similarity=0.159  Sum_probs=100.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc---------cccccccC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY---------DRLRPLSY   74 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~   74 (192)
                      .+|+++|.+|+|||||+|+|.+...... ..++.+ +.....+...+  ..+.+|||||.+..         ...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            4799999999999999999998875422 222222 22233444444  36899999997642         23345578


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH-HHHHHHcCC
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG-RAMAQKINA  153 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  153 (192)
                      +.+|++++|+|++++.+..  .+.+...+++.  ++|+++|+||+|+....               .... .++. .++.
T Consensus        80 ~~ad~il~V~D~~~~~~~~--d~~i~~~l~~~--~~p~ilv~NK~D~~~~~---------------~~~~~~~~~-~lg~  139 (439)
T 1mky_A           80 READLVLFVVDGKRGITKE--DESLADFLRKS--TVDTILVANKAENLREF---------------EREVKPELY-SLGF  139 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHH--HHHHHHHHHHH--TCCEEEEEESCCSHHHH---------------HHHTHHHHG-GGSS
T ss_pred             HhCCEEEEEEECCCCCCHH--HHHHHHHHHHc--CCCEEEEEeCCCCcccc---------------HHHHHHHHH-hcCC
Confidence            8999999999998753322  22333444443  79999999999975310               0111 2333 3443


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .+++++||++|.|++++++++.+.+.+.
T Consensus       140 ~~~~~iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          140 GEPIPVSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             CSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence            3689999999999999999999888643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.91  E-value=5.7e-24  Score=161.59  Aligned_cols=169  Identities=12%  Similarity=0.059  Sum_probs=113.4

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-------EEE------------EECCeEEEEEEEeCCCC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-------ADI------------EVDSKQVELALWDTAGQ   63 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~~~~~l~D~~g~   63 (192)
                      ..+++|+++|++++|||||+++|++................       ..+            ........+.+|||||+
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            46799999999999999999999985433211000000000       000            00123378999999999


Q ss_pred             CcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH
Q psy14754         64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE  143 (192)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  143 (192)
                      ++|...+...+..+|++|+|+|++++.+..... .|+..+... ...|+++++||+|+.+.......          .++
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~----------~~~  153 (403)
T 3sjy_A           86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGII-GVKNLIIVQNKVDVVSKEEALSQ----------YRQ  153 (403)
T ss_dssp             GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHH----------HHH
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHc-CCCCEEEEEECccccchHHHHHH----------HHH
Confidence            999998888899999999999999875444443 444444433 13599999999999763211110          112


Q ss_pred             HHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        144 GRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       144 ~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ..++....  ..++++++||++|+|+++++++|.+.+....+
T Consensus       154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~  195 (403)
T 3sjy_A          154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR  195 (403)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC
Confidence            22222221  23689999999999999999999987765543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=1.1e-24  Score=161.40  Aligned_cols=159  Identities=21%  Similarity=0.242  Sum_probs=112.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCC----cccccccccCC---CCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQE----DYDRLRPLSYP---DTD   78 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~---~~~   78 (192)
                      +|+++|.+|||||||+++|.+..+.....+.++ ......+.++. ...+.+|||||..    .+......+++   .++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            688999999999999999998764322222222 11122233332 2478999999953    23333334433   499


Q ss_pred             EEEEEEECCC---hhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754         79 VILMCFSIDS---PDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN  152 (192)
Q Consensus        79 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (192)
                      ++|+|+|+++   .++++.+. .|...+..+.   .+.|+++|+||+|+...                .+...++.+.+.
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----------------~e~~~~l~~~l~  301 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEA----------------AENLEAFKEKLT  301 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTH----------------HHHHHHHHHHCC
T ss_pred             EEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCC----------------HHHHHHHHHHhh
Confidence            9999999998   66777773 6777777654   47999999999998642                123455666655


Q ss_pred             C-ceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        153 A-FAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       153 ~-~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      . .+++++||++++|+++++++|.+.+.+.+.
T Consensus       302 ~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          302 DDYPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             cCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence            3 588999999999999999999999876544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.2e-23  Score=157.59  Aligned_cols=160  Identities=19%  Similarity=0.162  Sum_probs=111.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccccc---------cccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRL---------RPLS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~---------~~~~   73 (192)
                      ..++|+++|++|+|||||+++|.+........+..+... ...+..  .+..+.+|||||...+...         ....
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED--GYFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe--cCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            467999999999999999999998764322222222111 112222  2457999999997553211         1123


Q ss_pred             CCCCCEEEEEEECCChh--hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754         74 YPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI  151 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (192)
                      ...+|++++|+|++++.  ++... ..|+..+.....+.|+++|+||+|+.....              .++...++...
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~--------------~~~~~~~~~~~  308 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN--------------IKRLEKFVKEK  308 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH--------------HHHHHHHHHHT
T ss_pred             HhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH--------------HHHHHHHHHhc
Confidence            34689999999998876  44544 357777666555899999999999865211              12334445455


Q ss_pred             CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        152 NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      + .+++++||++|+|+++++++|.+.+...
T Consensus       309 ~-~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          309 G-LNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             T-CCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             C-CCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            5 5899999999999999999999988654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=1.8e-24  Score=166.66  Aligned_cols=152  Identities=22%  Similarity=0.281  Sum_probs=107.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCC-cccccc--------ccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQE-DYDRLR--------PLS   73 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~~~--------~~~   73 (192)
                      .++|+++|.+|+|||||+|+|.+..... ...++++ +.....+.++  +..+.+|||||.. .+....        ...
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            4899999999999999999999976432 2233332 2334444554  3578999999987 554321        235


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ++.+|++|+|+|++++.+++..  .++..+    .+.|+++|+||+|+...              ...++...+.. .+ 
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~--------------~~~~~~~~~~~-~~-  378 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK--------------INEEEIKNKLG-TD-  378 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC--------------CCHHHHHHHHT-CS-
T ss_pred             hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc--------------cCHHHHHHHhc-CC-
Confidence            6789999999999987665543  233333    37899999999999642              12223333322 22 


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      .+++++||+++.|+++++++|.+.+..
T Consensus       379 ~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          379 RHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             TTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            589999999999999999999997653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.90  E-value=1.8e-25  Score=173.61  Aligned_cols=163  Identities=20%  Similarity=0.229  Sum_probs=112.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +++++|+++|++++|||||+++|.+..+.....++.+... ...+... .+..+.+|||||++.|...+...++.+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            3578999999999999999999998665444333333222 1111111 2347899999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH---HHHc-CCceEE
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM---AQKI-NAFAYL  157 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~  157 (192)
                      +|+|++++...+..  .++..+...  +.|+++++||+|+......          ... .+...+   ...+ +.++++
T Consensus        81 LVVDa~dg~~~qt~--e~l~~~~~~--~vPiIVViNKiDl~~~~~~----------~v~-~~l~~~~~~~e~~~~~~~iv  145 (537)
T 3izy_P           81 LVVAADDGVMKQTV--ESIQHAKDA--HVPIVLAINKCDKAEADPE----------KVK-KELLAYDVVCEDYGGDVQAV  145 (537)
T ss_dssp             EECBSSSCCCHHHH--HHHHHHHTT--TCCEEECCBSGGGTTTSCC----------SSS-SHHHHTTSCCCCSSSSEEEC
T ss_pred             EEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEecccccccchH----------HHH-HHHHhhhhhHHhcCCCceEE
Confidence            99999986443332  223333332  7899999999999754321          111 111111   1112 235899


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        158 ECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++||++|.|++++++++...+...
T Consensus       146 ~vSAktG~GI~eLle~I~~l~~~~  169 (537)
T 3izy_P          146 HVSALTGENMMALAEATIALAEML  169 (537)
T ss_dssp             CCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred             EEECCCCCCchhHHHHHHHhhhcc
Confidence            999999999999999999876543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.90  E-value=6.4e-24  Score=152.66  Aligned_cols=167  Identities=13%  Similarity=0.161  Sum_probs=105.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeee--eEEEEECCeEEEEEEEeCCCCCccccccc---------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY--VADIEVDSKQVELALWDTAGQEDYDRLRP---------   71 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~---------   71 (192)
                      ..++|+|+|++|+|||||+++|++... .....++..+..  .......  +..+.+|||||+..+.....         
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            568999999999999999999998773 333333312222  2222333  35799999999876543322         


Q ss_pred             --ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEee-cccccCCccchhhhhhccCCCCCHHHHH
Q psy14754         72 --LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGN-KKDLRNDPNTIKELNKMKQEPVKPEEGR  145 (192)
Q Consensus        72 --~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~  145 (192)
                        ..++.+|++|+|+|+++   +......+...+...+.   ..|.++++| |+|+.... ....+..     ....+..
T Consensus        99 ~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~-----~~~~~~~  169 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHD-----SDNKALS  169 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHH-----CCCHHHH
T ss_pred             HHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHh-----cchHHHH
Confidence              25688999999999986   33332333344433221   467777777 99997431 1111111     0113344


Q ss_pred             HHHHHcCCc--eE--EEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        146 AMAQKINAF--AY--LECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       146 ~~~~~~~~~--~~--~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .+...++..  ++  +++||+++.|++++|++|.+.+...
T Consensus       170 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          170 KLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            455554431  12  7899999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=1.4e-24  Score=166.45  Aligned_cols=155  Identities=14%  Similarity=0.150  Sum_probs=100.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCC--------cccccccccCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE--------DYDRLRPLSYPD   76 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~   76 (192)
                      ..+|+++|.+|+|||||+|+|.+..........+.+...........+..+.+|||||++        .+...+...++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            368999999999999999999987765433222333333333445555689999999985        455556667889


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      +|++|+|+|+.++.+...  ..+...+++  .++|+++|+||+|+......           .     .++. .++.-++
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~-----------~-----~~~~-~lg~~~~  141 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN-----------I-----YDFY-SLGFGEP  141 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----C-----------C-----CSSG-GGSSCCC
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhh-----------H-----HHHH-HcCCCCe
Confidence            999999999988644332  344455544  37999999999998653110           0     0111 2232368


Q ss_pred             EEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        157 LECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++||++|.|++++++++.+.+.+
T Consensus       142 ~~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          142 YPISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             EECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             EEEeCcCCCChHHHHHHHHHhcCc
Confidence            999999999999999999988864

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=1.5e-23  Score=155.86  Aligned_cols=131  Identities=18%  Similarity=0.229  Sum_probs=96.0

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCCh----------hhhhchhhhhHHHHhh--hCCCCcEEEEeecc
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKH--FCPNVPIILVGNKK  119 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~  119 (192)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+.. .|+..+..  .+++.|++|++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcEEEEEECc
Confidence            57899999999999999999999999999999999994          4566664 34444332  34689999999999


Q ss_pred             cccCCccchhhhhhcc---CCCCCHHHHHHHHHH----------cCCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        120 DLRNDPNTIKELNKMK---QEPVKPEEGRAMAQK----------INAFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       120 D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      |+.........+....   ......+++..++..          ...+++++|||+++.||+++|+++.+.+.....
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l  347 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL  347 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence            9964221111111100   113566777777752          233689999999999999999999999876554

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.90  E-value=3e-24  Score=164.78  Aligned_cols=154  Identities=21%  Similarity=0.234  Sum_probs=99.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc--------ccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR--------PLS   73 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   73 (192)
                      ..++|+++|++|+|||||+|+|++..... ...++++ +.....+.+++  ..+.+|||||...+...+        ...
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            36789999999999999999999865432 2223322 22233344444  578999999976654332        235


Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA  153 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (192)
                      ++.+|++++|+|++++.+...  ..|+..+.    ..|+++|+||+|+.......    .  ...        +   ...
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~~----~--~~~--------~---~~~  357 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLIT----S--LEY--------P---ENI  357 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGST----T--CCC--------C---TTC
T ss_pred             hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhhH----H--HHH--------h---ccC
Confidence            788999999999998644333  34555543    47999999999997643211    0  000        0   022


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .+++++||+++.|+++++++|.+.+....
T Consensus       358 ~~~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          358 TQIVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             CCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            58999999999999999999999886543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=1.6e-23  Score=162.06  Aligned_cols=160  Identities=21%  Similarity=0.209  Sum_probs=108.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCC-------CCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQ-------FPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSY   74 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   74 (192)
                      +.+++|+++|++++|||||+++|.+..       ......+..+... ...+.++  +..+.+|||||+++|...+...+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHH
Confidence            468999999999999999999999876       1111111111111 1122333  36899999999999988888888


Q ss_pred             CCCCEEEEEEECCCh---hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754         75 PDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI  151 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (192)
                      ..+|++|+|+|++++   ++.+.     +..+...  +.|.++++||+|+.+....          ....++..++....
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~-----l~~~~~~--~ip~IvviNK~Dl~~~~~~----------~~~~~~l~~~l~~~  157 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEH-----MLILDHF--NIPIIVVITKSDNAGTEEI----------KRTEMIMKSILQST  157 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHH-----HHHHHHT--TCCBCEEEECTTSSCHHHH----------HHHHHHHHHHHHHS
T ss_pred             hhCCEEEEEEecCCCccHHHHHH-----HHHHHHc--CCCEEEEEECCCcccchhH----------HHHHHHHHHHHhhh
Confidence            999999999999883   33322     2233333  7899999999999752110          01122334444333


Q ss_pred             ---CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        152 ---NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       152 ---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                         ...+++++||++|+|+++++++|.+.+...
T Consensus       158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~  190 (482)
T 1wb1_A          158 HNLKNSSIIPISAKTGFGVDELKNLIITTLNNA  190 (482)
T ss_dssp             SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHHhhcCc
Confidence               236899999999999999999999987533

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.89  E-value=5e-23  Score=162.21  Aligned_cols=173  Identities=17%  Similarity=0.228  Sum_probs=109.1

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCccc----CceeeeeeEE-------------EEECCeEEEEEEEeCCCC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV----PTVFENYVAD-------------IEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~-------------~~~~~~~~~~~l~D~~g~   63 (192)
                      |+.+.++|+++|++++|||||+++|.+..+.....    ++.+..+...             ...+.....+.+|||||+
T Consensus         1 ~~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh   80 (594)
T 1g7s_A            1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH   80 (594)
T ss_dssp             CEECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred             CCCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence            56788999999999999999999998765433211    1111111000             000011125899999999


Q ss_pred             CcccccccccCCCCCEEEEEEECCC---hhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch---hhhhhccCC
Q psy14754         64 EDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI---KELNKMKQE  137 (192)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~  137 (192)
                      +.|...+...++.+|++|+|+|+++   +++++.+     ..+...  +.|+++++||+|+.......   ...+.....
T Consensus        81 e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-----~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~  153 (594)
T 1g7s_A           81 EAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ  153 (594)
T ss_dssp             SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-----HHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-----HHHHHc--CCeEEEEecccccccccccccCCchHHHHHHh
Confidence            9999999988999999999999998   4444333     223332  79999999999997532110   000000000


Q ss_pred             CCC-----H----HHHHHHHHH-------------cCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        138 PVK-----P----EEGRAMAQK-------------INAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       138 ~~~-----~----~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ...     .    +....+.+.             ...+|++++||++|.|+++++++|...+..
T Consensus       154 ~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence            000     0    000111111             123589999999999999999999987653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=1.6e-22  Score=153.91  Aligned_cols=163  Identities=16%  Similarity=0.149  Sum_probs=102.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCC---CCcccC--ceeeeee-EEEEE-------------C--C----eEEEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQF---PEVYVP--TVFENYV-ADIEV-------------D--S----KQVELALW   58 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~-~~~~~-------------~--~----~~~~~~l~   58 (192)
                      ..++|+++|+.++|||||+++|.+...   .....+  +....+. ..+..             +  +    ....+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            468999999999999999999985432   222122  1111111 11100             1  1    23789999


Q ss_pred             eCCCCCcccccccccCCCCCEEEEEEECCCh----hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhc
Q psy14754         59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKM  134 (192)
Q Consensus        59 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  134 (192)
                      ||||+++|.......+..+|++|+|+|++++    ++.+.+     ..+.. ....|+++++||+|+......       
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~-l~~~~iivv~NK~Dl~~~~~~-------  153 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-----MALEI-LGIDKIIIVQNKIDLVDEKQA-------  153 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-----HHHHH-TTCCCEEEEEECTTSSCTTTT-------
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-----HHHHH-cCCCeEEEEEEccCCCCHHHH-------
Confidence            9999999888777778889999999999964    333322     22222 223589999999999764211       


Q ss_pred             cCCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        135 KQEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       135 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                         ....++..++...+  ...+++++||++|+|+++++++|.+.+....
T Consensus       154 ---~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~  200 (408)
T 1s0u_A          154 ---EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK  200 (408)
T ss_dssp             ---TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred             ---HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence               11233444554432  2468999999999999999999998776543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.89  E-value=7e-23  Score=156.91  Aligned_cols=161  Identities=13%  Similarity=0.097  Sum_probs=103.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCc-------------------------------ccCceeeeeeEEEEECCe
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV-------------------------------YVPTVFENYVADIEVDSK   51 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   51 (192)
                      ...++|+++|++++|||||+++|++..-...                               ..+.. +.......+...
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~Gi-Tid~~~~~~~~~   93 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGK-TVEVGRAYFETE   93 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCc-eEEEeEEEEecC
Confidence            3578999999999999999999965421110                               00111 111122234445


Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhh---hh--chhhhhHHHHhhhCCCCc-EEEEeecccccCCc
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE--NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDP  125 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  125 (192)
                      +..+.+|||||+++|...+...++.+|++|+|+|++++..   ++  ......+..+...  +.| +++++||+|+....
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~--~v~~iIvviNK~Dl~~~~  171 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTVN  171 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--CCCeEEEEeecCCCcccc
Confidence            5689999999999999888888999999999999998532   11  1111222223222  677 99999999986532


Q ss_pred             cchhhhhhccCCCCCHHHHHHHHHHcC-----CceEEEeccCCcCCHHHHHH
Q psy14754        126 NTIKELNKMKQEPVKPEEGRAMAQKIN-----AFAYLECSAKSKEGVREVFE  172 (192)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~~~~  172 (192)
                      .......      ....+...+...++     .++++++||++|.|++++++
T Consensus       172 ~~~~~~~------~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          172 WSNERYE------ECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             hHHHHHH------HHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            2111111      11223334444433     35899999999999999654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=2e-23  Score=155.10  Aligned_cols=133  Identities=14%  Similarity=0.141  Sum_probs=92.1

Q ss_pred             eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC----------ChhhhhchhhhhHHHHhh--hCCCCcEEEEeec
Q psy14754         51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKH--FCPNVPIILVGNK  118 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK  118 (192)
                      ..+.+++|||+|++.++..|..++++++++|+|||++          +.+++++.. .|+..+..  ..++.|+++++||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~-~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHH-HHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHH-HHHHHHHhccccCCCeEEEEEEC
Confidence            5689999999999999999999999999999999998          667777775 44444432  2468999999999


Q ss_pred             ccccCCccchhh------hhhccCC---CCCHHHHHHHHHH---------------cCCceEEEeccCCcCCHHHHHHHH
Q psy14754        119 KDLRNDPNTIKE------LNKMKQE---PVKPEEGRAMAQK---------------INAFAYLECSAKSKEGVREVFETA  174 (192)
Q Consensus       119 ~D~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~~~~~i  174 (192)
                      +|+.........      ..+..+.   ....+++..++..               ...+.+++|||+++.||+++|+++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            999643211000      0000000   0123555565332               122457899999999999999999


Q ss_pred             HHHHhhhccc
Q psy14754        175 TRAALQVKKK  184 (192)
Q Consensus       175 ~~~~~~~~~~  184 (192)
                      .+.+.....+
T Consensus       340 ~~~I~~~~l~  349 (354)
T 2xtz_A          340 DETLRRRNLL  349 (354)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988765543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=9.3e-23  Score=149.59  Aligned_cols=134  Identities=19%  Similarity=0.226  Sum_probs=96.1

Q ss_pred             CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC----------ChhhhhchhhhhHHHHhh-hCCCCcEEEEeec
Q psy14754         50 SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKH-FCPNVPIILVGNK  118 (192)
Q Consensus        50 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK  118 (192)
                      .+++.+++||++|++.++..|..++++++++|+|+|++          +.+++.+....|...... ...+.|+++++||
T Consensus       164 ~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          164 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK  243 (327)
T ss_dssp             ETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred             eeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEEC
Confidence            34578999999999999999999999999999999776          444555554333333332 3468999999999


Q ss_pred             ccccCCccchhhh----hhccCCCCCHHHHHHHHH----------HcCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        119 KDLRNDPNTIKEL----NKMKQEPVKPEEGRAMAQ----------KINAFAYLECSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       119 ~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +|+.........+    .+........+++..+..          ..+ +.++++||+++.||+++|+.+.+.+....-+
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~  322 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLNLK  322 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHhHH
Confidence            9997533211111    112222456677777642          223 5788999999999999999999999876543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.89  E-value=9e-24  Score=162.89  Aligned_cols=162  Identities=18%  Similarity=0.260  Sum_probs=107.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +++.+|+++|++++|||||+++|.+..+.....+..+.... ...+...+..+.+|||||++.|...+...+..+|++++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~-~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIG-AYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSS-CCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEE-EEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            46789999999999999999999876544332222221111 01122233578999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc-CCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI-NAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa  161 (192)
                      |+|++++...+..  .++.....  .+.|+++++||+|+...+... ....+.....       +.+.+ +.++++++||
T Consensus        81 VVda~~g~~~qT~--e~l~~~~~--~~vPiIVviNKiDl~~~~~~~-v~~~l~~~~~-------~~~~~~~~~~~v~vSA  148 (501)
T 1zo1_I           81 VVAADDGVMPQTI--EAIQHAKA--AQVPVVVAVNKIDKPEADPDR-VKNELSQYGI-------LPEEWGGESQFVHVSA  148 (501)
T ss_dssp             EEETTTBSCTTTH--HHHHHHHH--TTCCEEEEEECSSSSTTCCCC-TTCCCCCCCC-------CTTCCSSSCEEEECCT
T ss_pred             EeecccCccHHHH--HHHHHHHh--cCceEEEEEEeccccccCHHH-HHHHHHHhhh-------hHHHhCCCccEEEEee
Confidence            9999885322222  22223332  278999999999997643210 0000000000       11122 2368999999


Q ss_pred             CCcCCHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRA  177 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~  177 (192)
                      ++|.|++++++++...
T Consensus       149 ktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          149 KAGTGIDELLDAILLQ  164 (501)
T ss_dssp             TTCTTCTTHHHHTTTT
T ss_pred             eeccCcchhhhhhhhh
Confidence            9999999999998754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=8.7e-23  Score=156.67  Aligned_cols=161  Identities=17%  Similarity=0.183  Sum_probs=103.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc-----------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR-----------   70 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------   70 (192)
                      ..++|+++|++|+|||||+|+|++....... .++++ +.....+.+++.  .+.+|||||...+....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            3589999999999999999999987653211 22222 222334455554  67899999975433221           


Q ss_pred             -cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HHH
Q psy14754         71 -PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AMA  148 (192)
Q Consensus        71 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  148 (192)
                       ...++.+|++++++|++++.+.+.  ..+...+...  +.|+++|+||+|+.....            ....+.. .+.
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~~--~~~~ilv~NK~Dl~~~~~------------~~~~~~~~~~~  320 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQD--QRMAGLMERR--GRASVVVFNKWDLVVHRE------------KRYDEFTKLFR  320 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSTTGG------------GCHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCCchh------------hHHHHHHHHHH
Confidence             123456899999999987644433  2344444433  799999999999975321            1111111 222


Q ss_pred             HHc---CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        149 QKI---NAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       149 ~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +.+   ...+++++||++|.|++++|+.+.+.+....
T Consensus       321 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          321 EKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             HHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             HHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            222   3358999999999999999999988776543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=1e-22  Score=160.33  Aligned_cols=161  Identities=16%  Similarity=0.191  Sum_probs=109.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC--CCCc-----ccC-------ceeeee--eEEEEE---CCeEEEEEEEeCCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPEV-----YVP-------TVFENY--VADIEV---DSKQVELALWDTAGQE   64 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-----~~~-------~~~~~~--~~~~~~---~~~~~~~~l~D~~g~~   64 (192)
                      .-.+|+++|+.++|||||+++|+...  ....     ...       .+.+..  ...+.+   ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            34689999999999999999998632  1110     000       000111  111222   4456899999999999


Q ss_pred             cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH
Q psy14754         65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG  144 (192)
Q Consensus        65 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  144 (192)
                      +|...+...++.+|++|+|+|++++.+.+.. ..|......   +.|+++++||+|+.....              ....
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~~--------------~~v~  144 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAADP--------------ERVA  144 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCCH--------------HHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCcccccH--------------HHHH
Confidence            9998888889999999999999987665555 345544433   789999999999976321              2223


Q ss_pred             HHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        145 RAMAQKINA--FAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       145 ~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .++.+.++.  .+++++||++|.|+++++++|.+.+....
T Consensus       145 ~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          145 EEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             HHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            445555442  25899999999999999999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.88  E-value=3.1e-23  Score=161.54  Aligned_cols=118  Identities=19%  Similarity=0.164  Sum_probs=82.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC---------------ccc------CceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---------------VYV------PTVFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      ...+|+++|++|+|||||+++|+......               ...      ....+.......+...+..+.+|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            45799999999999999999997211100               000      011111122223333457899999999


Q ss_pred             CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      +.+|...+...++.+|++|+|+|++++.+.+..  .++..+...  ++|+++|+||+|+....
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~--~~~~~~~~~--~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI--KLMEVCRLR--HTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHHTT--TCCEEEEEECTTSCCSC
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCcccc
Confidence            999999998999999999999999986544443  334444443  79999999999996543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=1.5e-23  Score=161.63  Aligned_cols=156  Identities=13%  Similarity=0.119  Sum_probs=102.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC--------CCcccccccccCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG--------QEDYDRLRPLSYP   75 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~~~~~   75 (192)
                      ...+|+++|.+|+|||||+|+|.+..+.........+...........+..+.+|||||        ++.+...+..+++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            45799999999999999999999977654333333333333444555667899999999        4455566667778


Q ss_pred             CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      .+|++|+|+|..++  +......+...+++  .+.|+++|+||+|+......                ..++. .++.-+
T Consensus       102 ~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~~----------------~~e~~-~lg~~~  160 (456)
T 4dcu_A          102 EADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRAN----------------IYDFY-SLGFGE  160 (456)
T ss_dssp             HCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-------------------------CCSG-GGSSSS
T ss_pred             hCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhhhhh----------------HHHHH-HcCCCc
Confidence            89999999998764  33443445555554  38999999999998642110                00111 112225


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        156 YLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      .+++||++|.|++++++.+.+.+..
T Consensus       161 ~~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          161 PYPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             eEEeecccccchHHHHHHHHhhccc
Confidence            6799999999999999999887754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=5.7e-22  Score=155.87  Aligned_cols=161  Identities=17%  Similarity=0.172  Sum_probs=111.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC--CCCCc-----cc--------Cceee-eeeEEEEE---CCeEEEEEEEeCCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD--QFPEV-----YV--------PTVFE-NYVADIEV---DSKQVELALWDTAGQE   64 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~-----~~--------~~~~~-~~~~~~~~---~~~~~~~~l~D~~g~~   64 (192)
                      .-.+|+++|+.++|||||+++|+..  .....     ..        ...+. .....+.+   ++..+.+.+|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            4569999999999999999999762  11110     00        00000 00111222   3456889999999999


Q ss_pred             cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH
Q psy14754         65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG  144 (192)
Q Consensus        65 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  144 (192)
                      +|...+...++.+|++|+|+|++++.+.+.. ..|......   +.|+++++||+|+.....              ....
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~~---~ipiIvviNKiDl~~a~~--------------~~v~  146 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVEQ---DLVIIPVINKIDLPSADV--------------DRVK  146 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHHT---TCEEEEEEECTTSTTCCH--------------HHHH
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHC---CCCEEEEEeccCccccCH--------------HHHH
Confidence            9988888888999999999999997666555 345544432   799999999999976321              1223


Q ss_pred             HHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        145 RAMAQKINA--FAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       145 ~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .++.+.++.  .+++++||++|.|+++++++|.+.+....
T Consensus       147 ~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          147 KQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            344444442  25899999999999999999999887654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=1e-22  Score=154.90  Aligned_cols=167  Identities=16%  Similarity=0.159  Sum_probs=112.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhC--------CCCCcc--c------CceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKD--------QFPEVY--V------PTVFENYVADIEVDSKQVELALWDTAGQEDY   66 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   66 (192)
                      ...++|+++|++++|||||+++|.+.        .+....  .      ....+.......+......+.+|||||+++|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            35689999999999999999999873        211110  0      0111111223334445568899999999999


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR  145 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  145 (192)
                      .......+..+|++|+|+|++++...+.  ..++..+...  +.| +++++||+|+..+....+         ....+..
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~---------~~~~~~~  155 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPELLD---------LVEMEVR  155 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHH---------HHHHHHH
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHHHHH---------HHHHHHH
Confidence            8888888899999999999988643222  2455555443  788 899999999975211100         0112344


Q ss_pred             HHHHHcC----CceEEEeccCCcCC------------------HHHHHHHHHHHHhhhc
Q psy14754        146 AMAQKIN----AFAYLECSAKSKEG------------------VREVFETATRAALQVK  182 (192)
Q Consensus       146 ~~~~~~~----~~~~~~~Sa~~~~g------------------i~~~~~~i~~~~~~~~  182 (192)
                      ++...++    ..+++++||++|.|                  ++++++.|...+....
T Consensus       156 ~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~  214 (405)
T 2c78_A          156 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV  214 (405)
T ss_dssp             HHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence            5555554    26899999999987                  7888888887765443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.88  E-value=1.5e-22  Score=153.45  Aligned_cols=165  Identities=16%  Similarity=0.146  Sum_probs=110.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC-------CCCc--c-------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ-------FPEV--Y-------VPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      .++||+++|++++|||||+++|.+..       +...  .       .... +.......+......+.+|||||+++|.
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~gi-Ti~~~~~~~~~~~~~~~iiDtpG~~~f~   80 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI-TINAAHVEYSTAARHYAHTDCPGHADYV   80 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTE-EEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCc-EEEeeeEEeccCCeEEEEEECCChHHHH
Confidence            36899999999999999999998741       1110  0       0111 1111122344445679999999999988


Q ss_pred             ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754         68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA  146 (192)
Q Consensus        68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (192)
                      ......++.+|++|+|+|+++....+.. +.| ..+...  +.| +++++||+|+..+....+         ....+..+
T Consensus        81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~---------~~~~~~~~  147 (397)
T 1d2e_A           81 KNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSEMVE---------LVELEIRE  147 (397)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHHHHH---------HHHHHHHH
T ss_pred             HHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHHHHH---------HHHHHHHH
Confidence            8888888999999999999985332222 223 344333  788 789999999975211100         01234455


Q ss_pred             HHHHcC----CceEEEeccCCcCC----------HHHHHHHHHHHHhhhc
Q psy14754        147 MAQKIN----AFAYLECSAKSKEG----------VREVFETATRAALQVK  182 (192)
Q Consensus       147 ~~~~~~----~~~~~~~Sa~~~~g----------i~~~~~~i~~~~~~~~  182 (192)
                      +...++    .++++++||+++.|          ++++++.|.+.+..+.
T Consensus       148 ~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~  197 (397)
T 1d2e_A          148 LLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT  197 (397)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence            555554    36899999999774          8999999988776543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=2.9e-22  Score=142.35  Aligned_cols=166  Identities=17%  Similarity=0.180  Sum_probs=101.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc--eeee-eeEEEEECCeEEEEEEEeCCCCCc-----------ccc
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--VFEN-YVADIEVDSKQVELALWDTAGQED-----------YDR   68 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~   68 (192)
                      ...+||+++|++|+|||||+|+|++..+.....++  .+.. ........  +..+.+|||||...           +..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            35799999999999999999999998876554432  2211 12223333  35789999999432           333


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR  145 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  145 (192)
                      .+...++.+|++|+|+|+++...   ....|+..+...+   ...|+++|+||+|+.........+.      ...+..+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~---~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~------~~~~~l~  175 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTE---EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLR------EAPEDIQ  175 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSS---HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------------CHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCH---HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHH------hchHHHH
Confidence            34445678999999999875322   1123333332211   1469999999999876432111110      1124566


Q ss_pred             HHHHHcCCceEEEeccCC-----cCCHHHHHHHHHHHHhh
Q psy14754        146 AMAQKINAFAYLECSAKS-----KEGVREVFETATRAALQ  180 (192)
Q Consensus       146 ~~~~~~~~~~~~~~Sa~~-----~~gi~~~~~~i~~~~~~  180 (192)
                      .+.+.++. .++.+++..     ..++.++++.+.+.+.+
T Consensus       176 ~l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          176 DLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            77777774 566665553     37899999998877754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.87  E-value=7.2e-22  Score=147.30  Aligned_cols=133  Identities=20%  Similarity=0.224  Sum_probs=89.5

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCC----------hhhhhchhhhhHHHHhh-hCCCCcEEEEeeccc
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH-FCPNVPIILVGNKKD  120 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D  120 (192)
                      .+.+.+|||+|++.++..|..++++++++|+|+|+++          .+++......|...... .+.+.|+|+++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4789999999999999999999999999999999999          56777775444444432 346899999999999


Q ss_pred             ccCCccchhhhhhc----cCCCCCHHHHHHHHH-------H---cCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754        121 LRNDPNTIKELNKM----KQEPVKPEEGRAMAQ-------K---INAFAYLECSAKSKEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       121 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~---~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      +.........+...    .....+.+++..++.       .   ...+.+++|||+++.||+++|+++.+.+....-+
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~  357 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK  357 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence            96432111111111    111245666666651       0   1225789999999999999999999998876543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=1.4e-22  Score=157.09  Aligned_cols=157  Identities=13%  Similarity=0.126  Sum_probs=97.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc------------------------------cCceeeeeeEEEEECCeEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY------------------------------VPTVFENYVADIEVDSKQV   53 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~   53 (192)
                      ..+||+++|++++|||||+++|++.......                              ...+.+.......+.....
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            4689999999999999999999865211000                              0001111112223444567


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhch-----hhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI-----PEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI  128 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  128 (192)
                      .+.+|||||+++|...+...++.+|++|+|+|++++.....+     .......... ....|+++|+||+|+...... 
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~~~-  189 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQ-  189 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTCHH-
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccchHH-
Confidence            899999999999999888899999999999999986443221     1112222222 223579999999999763210 


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy14754        129 KELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~  169 (192)
                       ...      ....+...+...++    ..+++++||++|+|+++
T Consensus       190 -~~~------~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          190 -RFE------EIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             -HHH------HHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             -HHH------HHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence             000      00122223333222    36899999999999975

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.87  E-value=2.7e-22  Score=147.63  Aligned_cols=133  Identities=18%  Similarity=0.186  Sum_probs=95.6

Q ss_pred             ECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC----------ChhhhhchhhhhHHHHhh-hCCCCcEEEEe
Q psy14754         48 VDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKH-FCPNVPIILVG  116 (192)
Q Consensus        48 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~  116 (192)
                      +..+.+.+++||++|++.++..|..++++++++|+|+|++          +.+++.+....|...+.. ..++.|+++++
T Consensus       156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~  235 (340)
T 4fid_A          156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL  235 (340)
T ss_dssp             EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred             EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence            3445678999999999999999999999999999999998          556677665444444443 34689999999


Q ss_pred             ecccccCCccchhhhhhccCC---CCCHHHHHHHH-HHc-------------------------CCceEEEeccCCcCCH
Q psy14754        117 NKKDLRNDPNTIKELNKMKQE---PVKPEEGRAMA-QKI-------------------------NAFAYLECSAKSKEGV  167 (192)
Q Consensus       117 nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~-------------------------~~~~~~~~Sa~~~~gi  167 (192)
                      ||+|+.........+...-+.   ....+++..+. +.+                         ..+.++++||++..||
T Consensus       236 NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv  315 (340)
T 4fid_A          236 NKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI  315 (340)
T ss_dssp             ECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred             ECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence            999997533221111111111   12345554443 222                         2367889999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy14754        168 REVFETATRAALQ  180 (192)
Q Consensus       168 ~~~~~~i~~~~~~  180 (192)
                      +.+|+.+.+.++.
T Consensus       316 ~~vF~~v~~~Il~  328 (340)
T 4fid_A          316 KRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999987

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=4.2e-22  Score=151.69  Aligned_cols=163  Identities=15%  Similarity=0.145  Sum_probs=106.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCC---CCcccC--ceeeeee-EEEEE-------------C--C----eEEEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQF---PEVYVP--TVFENYV-ADIEV-------------D--S----KQVELALW   58 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~-~~~~~-------------~--~----~~~~~~l~   58 (192)
                      ..++|+++|++++|||||+++|.+...   .....+  +....+. .....             .  +    ....+.+|
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   88 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   88 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence            468999999999999999999986432   222222  1111111 11100             0  1    13789999


Q ss_pred             eCCCCCcccccccccCCCCCEEEEEEECCCh----hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhc
Q psy14754         59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKM  134 (192)
Q Consensus        59 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  134 (192)
                      ||||+++|.......+..+|++|+|+|++++    ++.+.+     ..+... ...|+++++||+|+........     
T Consensus        89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~~-~~~~iivviNK~Dl~~~~~~~~-----  157 (410)
T 1kk1_A           89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-----MALQII-GQKNIIIAQNKIELVDKEKALE-----  157 (410)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-----HHHHHH-TCCCEEEEEECGGGSCHHHHHH-----
T ss_pred             ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEECccCCCHHHHHH-----
Confidence            9999999887777777889999999999964    233222     222222 1358999999999976321100     


Q ss_pred             cCCCCCHHHHHHHHHH--cCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        135 KQEPVKPEEGRAMAQK--INAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       135 ~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                           ..++..++...  ...++++++||++++|+++++++|.+.+....
T Consensus       158 -----~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          158 -----NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             -----HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             -----HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence                 11223333332  12368999999999999999999998776543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=2.4e-21  Score=144.86  Aligned_cols=163  Identities=16%  Similarity=0.117  Sum_probs=104.4

Q ss_pred             cee-EEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCc---------cccccccc
Q psy14754          5 RKK-LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQED---------YDRLRPLS   73 (192)
Q Consensus         5 ~~~-i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~   73 (192)
                      .++ |+++|++|+|||||+|+|.+..+.....+..+ +.....+.+++  ..+.+|||+|...         |...+ ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            355 99999999999999999998875332222222 22344555655  4689999999622         22222 24


Q ss_pred             CCCCCEEEEEEECCChh--hhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         74 YPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      +..+|++++|+|++++.  ..... +.|...+.... .+.|+++|+||+|+.+....           ........+...
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-----------~~~~~~~~l~~~  322 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDLY-----------KKLDLVEKLSKE  322 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHH-----------HHHHHHHHHHHH
T ss_pred             HHhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchHH-----------HHHHHHHHHHHH
Confidence            67899999999998875  33333 34555555432 57899999999998653100           001122223344


Q ss_pred             c--CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        151 I--NAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       151 ~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +  ...+++++||+++.|++++++.|.+.+....
T Consensus       323 l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          323 LYSPIFDVIPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             HCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             hcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence            3  2247899999999999999999998876654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=1.9e-22  Score=146.02  Aligned_cols=160  Identities=16%  Similarity=0.114  Sum_probs=87.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc--------cCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--------VPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR------   68 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~------   68 (192)
                      ..++|+++|.+|+|||||+|+|++.......        .++.+... ...+..++..+.+.+|||||..++..      
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            4799999999999999999998876543332        22222111 22222233446899999999743211      


Q ss_pred             -cc--------------------cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754         69 -LR--------------------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus        69 -~~--------------------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                       ..                    ...-..+|+++++++.+.. .+......++..+..   ++|+++|+||+|+......
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence             11                    0111237799999977652 234443455555554   7999999999998652211


Q ss_pred             hhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        128 IKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      .          .......+.....+ ++++++|+++++|+++++++|.+.+
T Consensus       163 ~----------~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          163 Q----------QFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             H----------HHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTC
T ss_pred             H----------HHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCC
Confidence            0          00112233333444 5889999999999999999998765

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.86  E-value=3.4e-22  Score=149.77  Aligned_cols=150  Identities=11%  Similarity=0.141  Sum_probs=103.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      +|+++|++++|||||+++|+        ....+ .......+...+..+.+|||||+++|.......++.+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giT-i~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTS-SDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEE-SSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEE-EEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            99999999999999999998        11111 111112344455679999999999997777777889999999999 


Q ss_pred             CChhhhhchhhhhHHHHhhhCCCCcE-EEEee-cccccCCccchhhhhhccCCCCCHHHHHHHHHHc--CCceEEE--ec
Q psy14754         87 DSPDSLENIPEKWTPEVKHFCPNVPI-ILVGN-KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI--NAFAYLE--CS  160 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~S  160 (192)
                      ++. ..... ..++..+...  +.|. ++++| |+|+ .. .....         ..++..++...+  ..+|+++  +|
T Consensus        93 ~~g-~~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~-~~~~~---------~~~~i~~~l~~~~~~~~~ii~~~~S  157 (370)
T 2elf_A           93 PQG-LDAHT-GECIIALDLL--GFKHGIIALTRSDST-HM-HAIDE---------LKAKLKVITSGTVLQDWECISLNTN  157 (370)
T ss_dssp             TTC-CCHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CH-HHHHH---------HHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred             CCC-CcHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CH-HHHHH---------HHHHHHHHHHhcCCCceEEEecccc
Confidence            543 22222 3455555444  6787 99999 9998 42 11000         012333333333  2369999  99


Q ss_pred             cCC---cCCHHHHHHHHHHHHhhh
Q psy14754        161 AKS---KEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~---~~gi~~~~~~i~~~~~~~  181 (192)
                      |++   ++|++++++.|.+.+...
T Consensus       158 A~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          158 KSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             TTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             cccCcCCCCHHHHHHHHHhhcccc
Confidence            999   999999999998887543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.7e-22  Score=138.94  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=84.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCC---
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPD---   76 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~---   76 (192)
                      ...++|+++|++|+|||||+++|.+..+...   ..++.        ..+.....+.+|||||+..+...+..++..   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS--------AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce--------eeeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            3578999999999999999999999876442   11111        112245678999999999988877777665   


Q ss_pred             -CCEEEEEEECC-ChhhhhchhhhhHHHHhh----hCCCCcEEEEeecccccCC
Q psy14754         77 -TDVILMCFSID-SPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        77 -~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~  124 (192)
                       +|++++|+|++ +.+++......+...+..    ..++.|+++|+||+|+...
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence             89999999999 888888875433343332    2248999999999999764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=2.6e-21  Score=148.29  Aligned_cols=155  Identities=17%  Similarity=0.139  Sum_probs=100.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCC---CCc---------ccCcee--------------------eeeeEEEEECCe
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQF---PEV---------YVPTVF--------------------ENYVADIEVDSK   51 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~---------~~~~~~--------------------~~~~~~~~~~~~   51 (192)
                      ..+||+++|++++|||||+++|++...   ...         ...++.                    +.......+...
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~  102 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA  102 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence            358999999999999999999987541   110         001100                    000011123334


Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCC-cEEEEeecccccCCccchhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV-PIILVGNKKDLRNDPNTIKE  130 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~~~~  130 (192)
                      ...+.+|||||+++|...+...+..+|++|+|+|++++...+.  ..++..+...  +. |+++|+||+|+......  .
T Consensus       103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~--~  176 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNGFDER--V  176 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTTSCHH--H
T ss_pred             CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEcCcCCcccHH--H
Confidence            5679999999999998888888899999999999998632221  2333333332  44 69999999999753210  0


Q ss_pred             hhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy14754        131 LNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV  170 (192)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~  170 (192)
                      ..      ....+...+.+.++    ..+++++||++|.|++++
T Consensus       177 ~~------~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          177 FE------SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HH------HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HH------HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            00      01234445555554    268999999999999874

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.85  E-value=8.5e-22  Score=152.01  Aligned_cols=160  Identities=13%  Similarity=0.109  Sum_probs=89.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC--CCCCc----------------------cc------CceeeeeeEEEEECCeEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD--QFPEV----------------------YV------PTVFENYVADIEVDSKQV   53 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~----------------------~~------~~~~~~~~~~~~~~~~~~   53 (192)
                      ..++|+++|++++|||||+++|+..  .+...                      ..      ....+.......+...+.
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~  121 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  121 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence            4689999999999999999999752  22100                      00      000000000011222346


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCCh---hhhhchhh--hhHHHHhhhCCCCc-EEEEeecccccCCccc
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP---DSLENIPE--KWTPEVKHFCPNVP-IILVGNKKDLRNDPNT  127 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~--~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~  127 (192)
                      .+.+|||||+++|...+...+..+|++|+|+|++++   .+|+...+  ..+.....  .+.| ++|++||+|+......
T Consensus       122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~  199 (467)
T 1r5b_A          122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSVQWS  199 (467)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTCSSC
T ss_pred             EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCcccc
Confidence            799999999999999888889999999999999986   34442211  12222222  2677 9999999999653211


Q ss_pred             hhhhhhccCCCCCHHHHHHHHHHc-C-----CceEEEeccCCcCCHHHHH
Q psy14754        128 IKELNKMKQEPVKPEEGRAMAQKI-N-----AFAYLECSAKSKEGVREVF  171 (192)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~gi~~~~  171 (192)
                      .+.+.      ....+...+...+ +     .++++++||++|.|+++++
T Consensus       200 ~~~~~------~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          200 EERYK------ECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHH------HHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHH------HHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            11110      0112344444443 2     3689999999999998754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=9.7e-23  Score=152.49  Aligned_cols=162  Identities=17%  Similarity=0.155  Sum_probs=83.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCC-Cccc--------Cceeeee-eEEEEECCeEEEEEEEeCCCC-------Ccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYV--------PTVFENY-VADIEVDSKQVELALWDTAGQ-------EDY   66 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--------~~~~~~~-~~~~~~~~~~~~~~l~D~~g~-------~~~   66 (192)
                      ..++|+|+|++|+|||||+++|++.... ..+.        ++..... ...+...+....+.+|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            4689999999999999999998765432 2221        1221111 112223445678999999998       555


Q ss_pred             ccccc-------ccC-----------CCC--CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754         67 DRLRP-------LSY-----------PDT--DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        67 ~~~~~-------~~~-----------~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  126 (192)
                      ...+.       .++           ...  ++++++++.+ ..++..+...|+..+.   .+.|+|+|+||+|+.....
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e  191 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE  191 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH
Confidence            55543       222           222  3445544432 3456665444555443   4799999999999875321


Q ss_pred             chhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ..          .....+..++..++ ++++++||+++.| ++.|..+.+.+.+.
T Consensus       192 v~----------~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          192 RE----------RLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             HH----------HHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHT
T ss_pred             HH----------HHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            00          00134445555555 5999999999998 88888877777654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.85  E-value=2.6e-21  Score=148.29  Aligned_cols=159  Identities=16%  Similarity=0.166  Sum_probs=101.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC--CCCCccc----------------------------CceeeeeeEEEEECCeEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD--QFPEVYV----------------------------PTVFENYVADIEVDSKQV   53 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~   53 (192)
                      ..++|+++|++++|||||+++|+..  .+.....                            ....+.......++....
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            4689999999999999999999874  3321100                            000111111112334456


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchh------hhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP------EKWTPEVKHFCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                      .+.+|||||+++|...+...++.+|++|+|+|+++ .+++...      ..+....... ...|+++++||+|+.+....
T Consensus        85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~  162 (435)
T 1jny_A           85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPYD  162 (435)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTTC
T ss_pred             EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCCcccc
Confidence            79999999999999888889999999999999998 5555332      1122222222 12469999999999763211


Q ss_pred             hhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy14754        128 IKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV  170 (192)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~  170 (192)
                      ...+.      ...++...+...++    .++++++||++|+|+.++
T Consensus       163 ~~~~~------~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          163 EKRYK------EIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             HHHHH------HHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             HHHHH------HHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence            11000      11234555655554    268999999999999754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.85  E-value=2.8e-21  Score=159.29  Aligned_cols=165  Identities=16%  Similarity=0.110  Sum_probs=110.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC-------CCCc--cc-----Ccee-eeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ-------FPEV--YV-----PTVF-ENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~--~~-----~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      ..++|+++|++++|||||+++|.+..       +...  ..     ...+ +.......++.....+.+|||||+++|..
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~  374 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK  374 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence            46899999999999999999998731       0000  00     0011 11111223444556899999999999988


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM  147 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (192)
                      .....+..+|++|+|+|++++...+.  ..++..+...  ++| +||++||+|+..+....+         ....+...+
T Consensus       375 ~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le---------~i~eEi~el  441 (1289)
T 3avx_A          375 NMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQV--GVPYIIVFLNKCDMVDDEELLE---------LVEMEVREL  441 (1289)
T ss_dssp             HHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHH---------HHHHHHHHH
T ss_pred             HHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHHc--CCCeEEEEEeecccccchhhHH---------HHHHHHHHH
Confidence            88888899999999999998643222  2344444443  788 799999999975211100         012344455


Q ss_pred             HHHcC----CceEEEeccCCc--------CCHHHHHHHHHHHHhhh
Q psy14754        148 AQKIN----AFAYLECSAKSK--------EGVREVFETATRAALQV  181 (192)
Q Consensus       148 ~~~~~----~~~~~~~Sa~~~--------~gi~~~~~~i~~~~~~~  181 (192)
                      ...++    .++++++||++|        .|++++++.|...+..+
T Consensus       442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P  487 (1289)
T 3avx_A          442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP  487 (1289)
T ss_dssp             HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence            55554    368999999999        57999999998876543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.85  E-value=8.1e-22  Score=151.77  Aligned_cols=156  Identities=12%  Similarity=0.127  Sum_probs=100.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC--CCCCcc-----------------------------cCceeeeeeEEEEECCeE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD--QFPEVY-----------------------------VPTVFENYVADIEVDSKQ   52 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   52 (192)
                      ..++|+++|++++|||||+++|++.  .+....                             ....+ .......+....
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiT-i~~~~~~~~~~~   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT-IDIALWKFETPK   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCC-CSCSCEEEECSS
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcE-EEEEEEEEecCC
Confidence            5799999999999999999999864  221100                             01111 111111234445


Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hhhch--hhhhHHHHhhhCCCCc-EEEEeecccccCCcc
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENI--PEKWTPEVKHFCPNVP-IILVGNKKDLRNDPN  126 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~--~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~  126 (192)
                      ..+.+|||||+++|...+...+..+|++|+|+|++++.   +|+..  ...++......  +.| +++++||+|+.....
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~--~v~~iivviNK~Dl~~~~~  162 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAVNKMDSVKWDE  162 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc--CCCeEEEEEEccccccCCH
Confidence            68999999999999888888899999999999999762   33211  11222223322  565 999999999974211


Q ss_pred             chhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy14754        127 TIKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV  170 (192)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~  170 (192)
                      .  .+.      ....+...+...++    .++++++||++|.|+.++
T Consensus       163 ~--~~~------~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          163 S--RFQ------EIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             H--HHH------HHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             H--HHH------HHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            0  000      01233445555544    268999999999998743

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.3e-21  Score=155.00  Aligned_cols=157  Identities=14%  Similarity=0.170  Sum_probs=99.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCccc-------------------------------CceeeeeeEEEEECCeE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV-------------------------------PTVFENYVADIEVDSKQ   52 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   52 (192)
                      ..+||+++|++++|||||+++|++........                               +.. +.......+...+
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~Gi-Tid~~~~~~~~~~  244 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV-TVSICTSHFSTHR  244 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTT-CCSCSCCEEECSS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCe-eEeeeeEEEecCC
Confidence            47899999999999999999998764322110                               111 1111111233345


Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hhh--chhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE--NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                      ..+.+|||||++.|...+...++.+|++|+|+|++++.   ++.  .........+... ...|++||+||+|+......
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTTCHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccchhHH
Confidence            68999999999999998888999999999999998752   111  1111122222221 12459999999998752210


Q ss_pred             hhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy14754        128 IKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV  170 (192)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~  170 (192)
                        ...      ....+...+...++    .++++++||++|.|++++
T Consensus       324 --~~~------ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 --RFE------EIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             --HHH------HHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             --HHH------HHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence              000      00122333333333    358999999999999865

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.84  E-value=2.6e-22  Score=158.53  Aligned_cols=165  Identities=13%  Similarity=0.097  Sum_probs=89.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCC--c-----------------------------ccCceeeeeeEEEEECCeE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE--V-----------------------------YVPTVFENYVADIEVDSKQ   52 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~   52 (192)
                      ..++|+++|++++|||||+++|+......  .                             ..+. .+.......+...+
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~G-iTid~~~~~~~~~~  254 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARG-VTMDVASTTFESDK  254 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCC-eeEEeeEEEEEeCC
Confidence            46799999999999999999996521000  0                             0001 11111112234455


Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hh--hchhhhhHHHHhhhCCCCc-EEEEeecccccCCcc
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SL--ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPN  126 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~  126 (192)
                      ..+.+|||||+.+|.......+..+|++|+|+|++++.   .+  ......++..+...  +.| +|+|+||+|+.....
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~~  332 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWSE  332 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTCH
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccccH
Confidence            78999999999999999888999999999999998753   22  22212223333332  566 999999999875221


Q ss_pred             chhhhhhccCCCCCHHHHHHHH-HHcC----CceEEEeccCCcCCHH--------------HHHHHHHHHHh
Q psy14754        127 TIKELNKMKQEPVKPEEGRAMA-QKIN----AFAYLECSAKSKEGVR--------------EVFETATRAAL  179 (192)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~Sa~~~~gi~--------------~~~~~i~~~~~  179 (192)
                      ..  ..      ....+...+. ..++    .++++++||++|.|+.              .|++.|...+.
T Consensus       333 ~~--~~------~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          333 DR--FQ------EIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             HH--HH------HHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             HH--HH------HHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            00  00      0012222333 2222    2489999999999998              67777766443

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.84  E-value=4.3e-21  Score=144.23  Aligned_cols=131  Identities=17%  Similarity=0.211  Sum_probs=93.5

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCC----------hhhhhchhhhhHHHHhh--hCCCCcEEEEeecc
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH--FCPNVPIILVGNKK  119 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~  119 (192)
                      ++.+++|||+|++.++..|..++++++++|+|||+++          .+++.... .|+..+..  ..++.|++||+||+
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgNK~  294 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQ  294 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEECH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEECh
Confidence            3689999999999999999999999999999999999          77788775 55555543  35789999999999


Q ss_pred             cccCCccc--hhhhhhccCCC-------------C---CHHHHHHHH-----HHc-------CCceEEEeccCCcCCHHH
Q psy14754        120 DLRNDPNT--IKELNKMKQEP-------------V---KPEEGRAMA-----QKI-------NAFAYLECSAKSKEGVRE  169 (192)
Q Consensus       120 D~~~~~~~--~~~~~~~~~~~-------------~---~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~gi~~  169 (192)
                      |+......  ...+....+..             -   ..+++..|+     +..       ..+.+++|||+++.||++
T Consensus       295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~  374 (402)
T 1azs_C          295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  374 (402)
T ss_dssp             HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred             hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence            98643210  00010000000             0   134455543     221       235678999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q psy14754        170 VFETATRAALQVKK  183 (192)
Q Consensus       170 ~~~~i~~~~~~~~~  183 (192)
                      +|.++.+.+.....
T Consensus       375 vF~~v~~~I~~~~l  388 (402)
T 1azs_C          375 VFNDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888876543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.84  E-value=1.7e-21  Score=142.64  Aligned_cols=160  Identities=17%  Similarity=0.176  Sum_probs=97.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCc------ccCce---------------------eeee--------------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV------YVPTV---------------------FENY--------------   42 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~---------------------~~~~--------------   42 (192)
                      ..++|+|+|.+|+|||||+|+|++..+...      ..|+.                     ++..              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999999876421      11210                     0000              


Q ss_pred             ---------eEEEEE-CCeEEEEEEEeCCCCCc-------------ccccccccCCCCCEEE-EEEECCChhhhhchhhh
Q psy14754         43 ---------VADIEV-DSKQVELALWDTAGQED-------------YDRLRPLSYPDTDVIL-MCFSIDSPDSLENIPEK   98 (192)
Q Consensus        43 ---------~~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~   98 (192)
                               ...+.+ ......+.+|||||...             +...+..+++.++.++ +|+|+++..+.... ..
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~  183 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence                     000000 00125799999999642             2334445667777666 79999875333322 13


Q ss_pred             hHHHHhhhCCCCcEEEEeecccccCCccc-hhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754         99 WTPEVKHFCPNVPIILVGNKKDLRNDPNT-IKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus        99 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      +...+..  .+.|+++|+||+|+...... ...+.   ...        .....+..+++++||+++.|++++++++.+.
T Consensus       184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~--------~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLE---NKL--------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHT---TCS--------SCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHh---CCc--------CcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            4444443  37899999999999764321 11110   000        0000122478899999999999999998764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.83  E-value=2.4e-20  Score=145.50  Aligned_cols=119  Identities=17%  Similarity=0.103  Sum_probs=80.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCccc----------Cc-----------eeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV----------PT-----------VFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      ...+|+++|++|+|||||+++|+.........          .+           ..+.......+...+..+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            46899999999999999999998632111000          00           0011111122333457899999999


Q ss_pred             CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754         63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  126 (192)
                      +.+|...+...++.+|++|+|+|++++...  ....++..+...  +.|+++++||+|+.....
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~--~t~~~~~~~~~~--~ipiivviNK~Dl~~~~~  151 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVED--RTRKLMEVTRLR--DTPILTFMNKLDRDIRDP  151 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCH--HHHHHHHHHTTT--TCCEEEEEECTTSCCSCH
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchH--HHHHHHHHHHHc--CCCEEEEEcCcCCccccH
Confidence            999988888889999999999999886322  112334444333  799999999999976543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=1.2e-20  Score=135.69  Aligned_cols=119  Identities=13%  Similarity=0.123  Sum_probs=81.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCC--------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYP--------   75 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~--------   75 (192)
                      .+++|+++|++|+|||||+++|++...........++.......+...+..+.+|||||+.++.......++        
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~  114 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN  114 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence            579999999999999999999999875332222222222222222333458999999999877654433332        


Q ss_pred             -CCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccC
Q psy14754         76 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRN  123 (192)
Q Consensus        76 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~  123 (192)
                       .+|++++|++++... +......|+..+...+.   ..|+++|+||+|+..
T Consensus       115 ~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          115 RTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             CEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             CCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence             689999999987654 55544467766665432   249999999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=3.4e-20  Score=129.04  Aligned_cols=160  Identities=14%  Similarity=0.069  Sum_probs=95.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcc----------cccccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDY----------DRLRPL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~   72 (192)
                      ...+|+++|++|||||||++++.+..+.....++.+... ...+.+.+   .+.+||+||....          ......
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            457899999999999999999998764333233333222 12222222   5789999997431          111112


Q ss_pred             cC---CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754         73 SY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ  149 (192)
Q Consensus        73 ~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (192)
                      ++   +.++++++++|++++.+...  ..+...+...  +.|+++++||+|+......          ......+..+..
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~~~v~nK~D~~s~~~~----------~~~~~~~~~~~~  167 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVDS--NIAVLVLLTKADKLASGAR----------KAQLNMVREAVL  167 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCHHHH----------HHHHHHHHHHHG
T ss_pred             HHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEecccCCCchhH----------HHHHHHHHHHHH
Confidence            22   56899999999987643321  1222333332  7899999999998652210          001123334444


Q ss_pred             HcC-CceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        150 KIN-AFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       150 ~~~-~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ..+ .+.++++||+++.|++++++.|.+.+.+
T Consensus       168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             hcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            443 3578899999999999999999887654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.81  E-value=8.4e-20  Score=146.66  Aligned_cols=118  Identities=18%  Similarity=0.108  Sum_probs=81.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC--CCC------Ccc---c------CceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD--QFP------EVY---V------PTVFENYVADIEVDSKQVELALWDTAGQEDY   66 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~------~~~---~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   66 (192)
                      ...+|+|+|++|+|||||+++|+..  .+.      ...   .      ....+.......+......+.+|||||+.+|
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   90 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF   90 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence            4689999999999999999999842  110      000   0      0000111111122223568999999999999


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      ...+...++.+|++|+|+|+++..+.+.. ..|.. +...  +.|+++++||+|+....
T Consensus        91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           91 TIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTCC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccCC
Confidence            88888889999999999999987665554 24443 3333  79999999999997653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.81  E-value=1.1e-19  Score=145.50  Aligned_cols=115  Identities=16%  Similarity=0.115  Sum_probs=80.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccC-----------------ceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-----------------TVFENYVADIEVDSKQVELALWDTAGQEDY   66 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   66 (192)
                      ...+|+++|+.|+|||||+++|++.........                 ...+.......+....+.+.+|||||+.+|
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence            346899999999999999999985332210000                 001111222233334578999999999999


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      ...+...++.+|++++|+|+++....+.  ..++..+...  +.|+++++||+|+.
T Consensus        88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           88 VGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             HHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHHc--cCCEEEEecCCchh
Confidence            8888888899999999999887533222  3444555443  79999999999997

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.81  E-value=1.6e-19  Score=145.07  Aligned_cols=175  Identities=14%  Similarity=0.127  Sum_probs=105.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCceeee--------eeEEEEE--------------------------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFEN--------YVADIEV--------------------------   48 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~--------~~~~~~~--------------------------   48 (192)
                      ..++|+|+|.+|+|||||+|+|++...... ..+++...        ......+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            478999999999999999999998775432 22222100        0001111                          


Q ss_pred             --------------------CCeE--EEEEEEeCCCCCc---ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHH
Q psy14754         49 --------------------DSKQ--VELALWDTAGQED---YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV  103 (192)
Q Consensus        49 --------------------~~~~--~~~~l~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~  103 (192)
                                          +...  ..+.+|||||...   ....+..+++.+|++|+|+|++++.+.... +.|...+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence                                0000  2589999999544   233445677889999999999887555544 2454444


Q ss_pred             hhhCCCCcEEEEeecccccCCccch----hhhhhccCCCCCHHHHHHHHHHc-------CCceEEEeccC----------
Q psy14754        104 KHFCPNVPIILVGNKKDLRNDPNTI----KELNKMKQEPVKPEEGRAMAQKI-------NAFAYLECSAK----------  162 (192)
Q Consensus       104 ~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~----------  162 (192)
                      ...  +.|+++|+||+|+.......    ..+..... .+.......+....       ...+++++||+          
T Consensus       227 ~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~-~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          227 KGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASEN-RLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             TTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHH-HHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             Hhh--CCCEEEEEECcccccccccChhhHHHHHHHHH-HHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            433  67999999999986532000    00000000 00000001111111       12378999999          


Q ss_pred             ----CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 ----SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ----~~~gi~~~~~~i~~~~~~~~  182 (192)
                          ++.|++++++.+.+.+...+
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             hhhhhccCHHHHHHHHHHHHHHhH
Confidence                99999999999988776543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.81  E-value=9.1e-20  Score=131.65  Aligned_cols=120  Identities=12%  Similarity=0.117  Sum_probs=81.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccc---------cC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPL---------SY   74 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---------~~   74 (192)
                      .+++|+++|.+|+|||||+|+|++..+........++.......+...+..+.+|||||+.++......         ..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~  117 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD  117 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence            478999999999999999999998876432222222222222233334568999999998776533221         23


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC-C--CcEEEEeecccccCC
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND  124 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~--~p~ivv~nK~D~~~~  124 (192)
                      +.+|++++|+|++.. ++......|+..+...+. +  .|+++|+||+|+.+.
T Consensus       118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            468999999998653 355444467776655432 2  699999999998653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.80  E-value=2.9e-20  Score=137.02  Aligned_cols=115  Identities=17%  Similarity=0.130  Sum_probs=68.1

Q ss_pred             EEEEEEeCCCCCc-------------ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecc
Q psy14754         53 VELALWDTAGQED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK  119 (192)
Q Consensus        53 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  119 (192)
                      ..+.+|||||...             +...+..+++.+|++++|+|.++..........+...+..  .+.|+++|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence            4689999999753             2333445677899999999985432111111134444443  278999999999


Q ss_pred             cccCCccchhhhhhccCCCCCHHHHHHHHHH--cCCceEEEeccCC---cCCHHHHHHHHHHHHhhh
Q psy14754        120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQK--INAFAYLECSAKS---KEGVREVFETATRAALQV  181 (192)
Q Consensus       120 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~---~~gi~~~~~~i~~~~~~~  181 (192)
                      |+......            ...........  .+.+++..+|+.+   +.|++++++.+.+.+...
T Consensus       209 Dl~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          209 DLMDKGTD------------AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             TSSCSSCC------------CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             ccCCcchH------------HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            99764321            01111100001  1113444556666   789999999988777553

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.79  E-value=1e-18  Score=140.63  Aligned_cols=118  Identities=15%  Similarity=0.079  Sum_probs=80.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC--CCCcc-----------c----Cceeeee--eEEEEEC-----CeEEEEEEEe
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPEVY-----------V----PTVFENY--VADIEVD-----SKQVELALWD   59 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~-----------~----~~~~~~~--~~~~~~~-----~~~~~~~l~D   59 (192)
                      ...+|+|+|+.++|||||+++|+...  +....           .    ....+..  ...+.+.     +..+.+.+||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            46799999999999999999997531  11100           0    0000111  1112222     2337899999


Q ss_pred             CCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      |||+.+|...+...++.+|++|+|+|+++....+.. ..| ......  +.|+++++||+|+....
T Consensus        89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~~--~ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVW-RQANKY--KVPRIAFVNKMDRMGAN  150 (704)
T ss_pred             CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCEEEEEeCCCccccc
Confidence            999999988888899999999999999987544333 233 333333  79999999999997643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.79  E-value=5.7e-19  Score=141.91  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=81.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh--CCCCCcc---c------------CceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK--DQFPEVY---V------------PTVFENYVADIEVDSKQVELALWDTAGQEDY   66 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~~---~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   66 (192)
                      ...+|+++|++|+|||||+++|+.  +.+....   .            ....+.......+...+..+.+|||||+.+|
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   88 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF   88 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence            467999999999999999999985  2221000   0            0000111111112223468999999999999


Q ss_pred             cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      ...+...++.+|++|+|+|++++.+.+.. ..|. .+...  +.|+++|+||+|+....
T Consensus        89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           89 TVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTCC
T ss_pred             HHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCccccc
Confidence            88888888999999999999987555444 2343 34443  79999999999997653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.79  E-value=7.9e-20  Score=137.04  Aligned_cols=153  Identities=14%  Similarity=0.151  Sum_probs=94.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee--------------e----------------------------
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY--------------V----------------------------   43 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--------------~----------------------------   43 (192)
                      .+|+|+|++|||||||+|+|.+..+........+...              .                            
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999999776332221111000              0                            


Q ss_pred             -----------EEEE-ECCeEEEEEEEeCCCCCcc-------------cccccccCCCCCEEEEEEECCChhhhhchhhh
Q psy14754         44 -----------ADIE-VDSKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK   98 (192)
Q Consensus        44 -----------~~~~-~~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~   98 (192)
                                 ..+. .......+.+|||||...+             ......+++.+|++|+++|..+.....   ..
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~~  191 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---SD  191 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---CH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---HH
Confidence                       0000 0011235899999997765             334455678999999999876543222   24


Q ss_pred             hHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHH
Q psy14754         99 WTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETA  174 (192)
Q Consensus        99 ~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i  174 (192)
                      |...+.... .+.|+++|+||+|+......            .......+...++ .+|+++|+..+.++++.+...
T Consensus       192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~------------~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          192 AIKISREVDPSGDRTFGVLTKIDLMDKGTD------------AVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             HHHHHHHSCTTCTTEEEEEECGGGCCTTCC------------SHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHhcccCCCEEEEEeCCccCCCccc------------HHHHHcCcccccc-CCeEEEEECChHHhccCCCHH
Confidence            444444433 27899999999999764221            1111111222233 578888888888877665543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=7.7e-19  Score=132.99  Aligned_cols=159  Identities=19%  Similarity=0.186  Sum_probs=102.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccc----ccccc---cCCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYD----RLRPL---SYPDTD   78 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~----~~~~~---~~~~~~   78 (192)
                      .|+++|++|||||||++++.+........+.++... .-.+..+. ...+.+||+||.....    .....   .++.++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            589999999999999999998753211111111111 11222222 2568999999974321    12111   235689


Q ss_pred             EEEEEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754         79 VILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA  155 (192)
Q Consensus        79 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (192)
                      .+++++|++ ...+..+. .+...+..+.   ...|.++++||+|+... .             ............+ .+
T Consensus       238 ~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-------------~~~~l~~~l~~~g-~~  300 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-------------AVKALADALAREG-LA  300 (416)
T ss_dssp             EEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-------------HHHHHHHHHHTTT-SC
T ss_pred             hhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-------------HHHHHHHHHHhcC-Ce
Confidence            999999997 44455553 4444444332   26899999999998652 1             1122223333333 58


Q ss_pred             EEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        156 YLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ++.+||++++|+++++++|.+.+...+.
T Consensus       301 vi~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          301 VLPVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             EEEEECCCccCHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999876543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.78  E-value=1.2e-18  Score=136.43  Aligned_cols=119  Identities=15%  Similarity=0.101  Sum_probs=83.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCC------------------Cc---ccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFP------------------EV---YVPTVFENYVADIEVDSKQVELALWDTAG   62 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   62 (192)
                      +..+|+|+|+.++|||||..+|+...-.                  +.   ....+.+.....+.+.+++..+.|+||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            4678999999999999999998632110                  00   00001111112233444567899999999


Q ss_pred             CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754         63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  126 (192)
                      |.+|.......++.+|++|+|+|+.++-..+.  +..+....++  ++|.++++||+|....+.
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT--~~v~~~a~~~--~lp~i~fINK~Dr~~ad~  169 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT--RKLMDVCRMR--ATPVMTFVNKMDREALHP  169 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH--HHHHHHHHHT--TCCEEEEEECTTSCCCCH
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCccccc--HHHHHHHHHh--CCceEEEEecccchhcch
Confidence            99999999999999999999999998733333  3444555555  899999999999976554

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=9.5e-20  Score=133.22  Aligned_cols=161  Identities=17%  Similarity=0.164  Sum_probs=84.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC-CCCCccc--------CceeeeeeEEEEE--CCeEEEEEEEeCCCC-------Cc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD-QFPEVYV--------PTVFENYVADIEV--DSKQVELALWDTAGQ-------ED   65 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~l~D~~g~-------~~   65 (192)
                      ..++|+++|++|+|||||+++|.+. .++....        ++.. .....+.+  .+....+++||++|.       +.
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQ-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcce-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            5689999999999999999998875 4433221        1111 11111222  233467999999997       44


Q ss_pred             cccccc-------ccCC-------------CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         66 YDRLRP-------LSYP-------------DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        66 ~~~~~~-------~~~~-------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      +.....       .+++             .+++++++.+.+. .+++....   ..++...++.|+++|+||.|+....
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHH
Confidence            433322       1111             2334555544332 23444432   3334334468999999999986521


Q ss_pred             cchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      +          .....+++.++++.++ ++++++||+++ |++++|..+.+.+...
T Consensus       172 e----------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          172 E----------RERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             H----------HHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTT
T ss_pred             H----------HHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            1          0112345667777777 59999999999 9999999999888654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=1.4e-18  Score=131.21  Aligned_cols=84  Identities=11%  Similarity=0.069  Sum_probs=47.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE----------------------EECC-eEEEEEEEeCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----------------------EVDS-KQVELALWDTAG   62 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~l~D~~g   62 (192)
                      ++|+++|.+|+|||||+|+|++........+.++......+                      .++. ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987732222222221111110                      0122 257899999999


Q ss_pred             CCcc----cccc---cccCCCCCEEEEEEECCCh
Q psy14754         63 QEDY----DRLR---PLSYPDTDVILMCFSIDSP   89 (192)
Q Consensus        63 ~~~~----~~~~---~~~~~~~~~~i~v~d~~~~   89 (192)
                      ....    ....   ...++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7532    2222   2457899999999999874

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=2e-18  Score=130.85  Aligned_cols=159  Identities=16%  Similarity=0.187  Sum_probs=80.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccC-------ceeeeeeEEEEE--CCeEEEEEEEeCCCCCcccc------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-------TVFENYVADIEV--DSKQVELALWDTAGQEDYDR------   68 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~------   68 (192)
                      ..++|+|+|++|+|||||++.|++..+......       .+.......+.+  .+....+++||++|...+..      
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            467899999999999999999998776322110       000000111111  22234789999999754311      


Q ss_pred             -------------------cccccCCCCCEEEEEEECCCh-hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy14754         69 -------------------LRPLSYPDTDVILMCFSIDSP-DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI  128 (192)
Q Consensus        69 -------------------~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  128 (192)
                                         .....+.++++.+++|..... .++......|+..+.   .+.|+|+|+||+|+.....  
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e--  184 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE--  184 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH--
Confidence                               123445565654555544432 345555445666654   3799999999999865211  


Q ss_pred             hhhhhccCCCCC--HHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        129 KELNKMKQEPVK--PEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       129 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                                +.  ...+.+++...+ ++++++|++++.++++++..+...+
T Consensus       185 ----------v~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          185 ----------CQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             ----------HHHHHHHHHHHHHHHT-CCCCCCC-----------------C
T ss_pred             ----------HHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhC
Confidence                      11  144555666666 5899999999999999888776643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.74  E-value=2e-18  Score=129.03  Aligned_cols=105  Identities=20%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL  131 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  131 (192)
                      +..+.+|||||...   .....+..+|++++|+|....+..+.+...        ..+.|+++|+||+|+......    
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~----  235 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEA----  235 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHH----
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHH----
Confidence            46789999999432   222345789999999998776555444211        114699999999998642111    


Q ss_pred             hhccCCCCCHHHHHHHHHH---cC------CceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        132 NKMKQEPVKPEEGRAMAQK---IN------AFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                               .....++...   .+      ..+++++||++|+|+++++++|.+.+..
T Consensus       236 ---------~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          236 ---------RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             ---------HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence                     0111122221   11      2589999999999999999999988755

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.73  E-value=2.4e-18  Score=128.61  Aligned_cols=158  Identities=19%  Similarity=0.231  Sum_probs=90.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcc------cCcee---------------------eee---------------
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY------VPTVF---------------------ENY---------------   42 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~---------------------~~~---------------   42 (192)
                      ..+|+|+|.+|+|||||+|+|++..+....      .|+..                     +..               
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            569999999999999999999998764211      12200                     000               


Q ss_pred             --------eEEEEE-CCeEEEEEEEeCCCCCc-------------ccccccccCCCCC-EEEEEEECCChhhhhchhh-h
Q psy14754         43 --------VADIEV-DSKQVELALWDTAGQED-------------YDRLRPLSYPDTD-VILMCFSIDSPDSLENIPE-K   98 (192)
Q Consensus        43 --------~~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~-~   98 (192)
                              ...+.+ ......+.+|||||...             +......+++..+ +++++++++..  +..... .
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~~~~~  188 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANSDALK  188 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGCHHHH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchhHHHH
Confidence                    000000 01135699999999532             2223334554555 55556665542  332211 2


Q ss_pred             hHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754         99 WTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus        99 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      +...+..  .+.|+++|+||+|+...........  ....        +....+..+++++||+++.|++++++++.+
T Consensus       189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~--~~~~--------~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDP--QGQRTIGVITKLDLMDEGTDARDVL--ENKL--------LPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHH--TTCS--------SCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCc--CCCceEEEeccccccCcchhHHHHH--hCCc--------ccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3333332  3799999999999976432111000  0000        000112246789999999999999999876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.73  E-value=4.8e-18  Score=119.06  Aligned_cols=157  Identities=19%  Similarity=0.123  Sum_probs=92.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-------------eeEEEEEC------------------CeE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-------------YVADIEVD------------------SKQ   52 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~------------------~~~   52 (192)
                      ...+|+++|.+|+|||||+++|................             .......+                  ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            34689999999999999999998752211000000000             00001111                  123


Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhh
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELN  132 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  132 (192)
                      ..+.+|||+|+.....   .+....+.+++|+|+++...  .. ..+...   .  +.|.++|+||+|+...        
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~-~~~~~~---~--~~~~iiv~NK~Dl~~~--------  169 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VV-EKHPEI---F--RVADLIVINKVALAEA--------  169 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HH-HHCHHH---H--HTCSEEEEECGGGHHH--------
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hh-hhhhhh---h--hcCCEEEEecccCCcc--------
Confidence            5678999998511111   11125688999999876531  11 111121   1  5799999999998642        


Q ss_pred             hccCCCCCHHHHHHHHHHcC-CceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        133 KMKQEPVKPEEGRAMAQKIN-AFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                          ......+........+ ..+++++||++|.|+++++++|.+.+.....
T Consensus       170 ----~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~  217 (221)
T 2wsm_A          170 ----VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD  217 (221)
T ss_dssp             ----HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred             ----hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence                1122334444444332 3689999999999999999999998866543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=1.3e-18  Score=127.32  Aligned_cols=136  Identities=15%  Similarity=0.198  Sum_probs=103.7

Q ss_pred             HHHHHHhhCCCC-CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh-hhhchhh
Q psy14754         20 CLLIVFSKDQFP-EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD-SLENIPE   97 (192)
Q Consensus        20 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~   97 (192)
                      +|+.++..+.+. ..+.|+.+..+...  ..... .+.+||+  +++|..++..+++++|++|+|||++++. ++..+ +
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence            677888888887 77778877655433  22222 7899999  8999999999999999999999999987 56555 5


Q ss_pred             hhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC-ceEEEeccCCcCCHHHHHHHHHH
Q psy14754         98 KWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA-FAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus        98 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      .|+..+..  .+.|+++|+||+|+.+...            +  ++..++++.+.. .+++++||+++.|++++|..+..
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL~~~~~------------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDLYDEDD------------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGGCCHHH------------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHcCCchh------------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            78877665  3899999999999965211            1  234455555542 58999999999999999988764


Q ss_pred             H
Q psy14754        177 A  177 (192)
Q Consensus       177 ~  177 (192)
                      .
T Consensus       170 e  170 (301)
T 1u0l_A          170 K  170 (301)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.72  E-value=3e-18  Score=136.69  Aligned_cols=174  Identities=16%  Similarity=0.127  Sum_probs=113.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh--CCCCC------cc---c--C----ceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK--DQFPE------VY---V--P----TVFENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~--~~~~~------~~---~--~----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      .||+|+|+.++|||||..+|+.  +....      ..   +  +    .+.+.....+.+..++..+.++|||||.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            4799999999999999999874  11111      00   0  0    00111122234455667899999999999999


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchh--hh-hhccC---------
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIK--EL-NKMKQ---------  136 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~-~~~~~---------  136 (192)
                      .....++.+|++|+|+|+.++  .+...+..+......  +.|.++++||+|....+....  .+ ..+..         
T Consensus        83 Ev~raL~~~DgavlVVDa~~G--V~~qT~~v~~~a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~  158 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDG--VQAQTRILFHALRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE  158 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCT--TCSHHHHHHHHHHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHHhCEEEEEEeCCCC--CcHHHHHHHHHHHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence            999999999999999999986  333334445555555  899999999999876543211  00 00000         


Q ss_pred             ---------------------------------CCCCHHHHH----HHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        137 ---------------------------------EPVKPEEGR----AMAQKINAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       137 ---------------------------------~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                                                       ......+..    .-.......|++..||+++.|++.+++.+.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence                                             000000000    0011223468899999999999999999998877


Q ss_pred             hhcc
Q psy14754        180 QVKK  183 (192)
Q Consensus       180 ~~~~  183 (192)
                      .+..
T Consensus       239 ~p~~  242 (638)
T 3j25_A          239 SSTH  242 (638)
T ss_dssp             CSGG
T ss_pred             Cccc
Confidence            6644

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.68  E-value=3.1e-16  Score=110.17  Aligned_cols=154  Identities=16%  Similarity=0.128  Sum_probs=87.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-------------EEEEEC-C-------------------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-------------ADIEVD-S-------------------   50 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~-~-------------------   50 (192)
                      ..++|+++|.+|+|||||+++|+...+...+.++....+.             ..+.++ +                   
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999987554432222221111             111111 0                   


Q ss_pred             eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy14754         51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE  130 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  130 (192)
                      ....+.++|++|.-....   .+-...+..+.++|.........   .....+     +.|.++|+||+|+...      
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~------  179 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADA------  179 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHH------
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCch------
Confidence            011355556555211000   01112344556666433211111   111111     4788999999998642      


Q ss_pred             hhhccCCCCCHHHHHHHHHHc-CCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        131 LNKMKQEPVKPEEGRAMAQKI-NAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                            +....++...+...+ ...+++++||++|.|++++|+++.+.+..
T Consensus       180 ------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          180 ------VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             ------HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence                  112344555555543 23689999999999999999999887754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.67  E-value=3.3e-17  Score=122.09  Aligned_cols=104  Identities=14%  Similarity=0.120  Sum_probs=61.8

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL  131 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  131 (192)
                      +..+.++||||....   .....+.+|++++|+|++++...+.+..    .+    -..|.++|+||+|+.+....    
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~i----l~~~~ivVlNK~Dl~~~~~~----  230 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----GI----IEMADLVAVTKSDGDLIVPA----  230 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH----
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----HH----HhcCCEEEEeeecCCCchhH----
Confidence            356899999995321   1234568999999999987643332211    11    14688999999998642110    


Q ss_pred             hhccCCCCCHHHHHHHHHH---------cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        132 NKMKQEPVKPEEGRAMAQK---------INAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                               ......+...         ....+++.+||++++|+++++++|.+.+.
T Consensus       231 ---------~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          231 ---------RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             ---------HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                     0011111110         01247899999999999999999988753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.67  E-value=5.1e-17  Score=133.05  Aligned_cols=115  Identities=14%  Similarity=0.088  Sum_probs=82.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCc----------------ccC--ceeeeeeEEEEE--------------CCe
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV----------------YVP--TVFENYVADIEV--------------DSK   51 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~--~~~~~~~~~~~~--------------~~~   51 (192)
                      ...||+|+|++++|||||+++|+...-...                ...  +.... ...+.+              ++.
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~-~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKST-AISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCC-EEEEEEECCHHHHHHCSSCCCSS
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeec-eeEEEecccccccccccccccCC
Confidence            457999999999999999999986421000                000  11000 111112              234


Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      ...+.+|||||+.+|...+...++.+|++|+|+|++++.+.+.. ..|......   +.|+++++||+|+..
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~---~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE---RIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCEEEEEEECHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHHc---CCCeEEEEECCCcch
Confidence            78999999999999999999999999999999999998666654 345444432   799999999999863

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=1.6e-15  Score=112.72  Aligned_cols=84  Identities=19%  Similarity=0.120  Sum_probs=54.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCe---------------EEEEEEEeCCCCCccc-
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSK---------------QVELALWDTAGQEDYD-   67 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~l~D~~g~~~~~-   67 (192)
                      .++|+++|.+|+|||||+|+|.+........|..+.. ....+.+.+.               ...+.+|||||...+. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            4799999999999999999999977433222221111 1112223321               1579999999987653 


Q ss_pred             ---cccc---ccCCCCCEEEEEEECCC
Q psy14754         68 ---RLRP---LSYPDTDVILMCFSIDS   88 (192)
Q Consensus        68 ---~~~~---~~~~~~~~~i~v~d~~~   88 (192)
                         ....   ..++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence               2222   23678999999999986

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.65  E-value=2.3e-17  Score=122.68  Aligned_cols=107  Identities=19%  Similarity=0.191  Sum_probs=65.6

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL  131 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  131 (192)
                      ++.+.+|||||.......   ..+.+|++++|+|++....++.+..   ...     +.|.++|+||+|+......... 
T Consensus       148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----~~p~ivv~NK~Dl~~~~~~~~~-  215 (341)
T 2p67_A          148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GLM-----EVADLIVINKDDGDNHTNVAIA-  215 (341)
T ss_dssp             TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HHH-----HHCSEEEECCCCTTCHHHHHHH-
T ss_pred             CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hhh-----cccCEEEEECCCCCChHHHHHH-
Confidence            457999999996543322   3578999999999987654433211   111     4688999999998652110000 


Q ss_pred             hhccCCCCCHHHHHHHHHHcC------CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        132 NKMKQEPVKPEEGRAMAQKIN------AFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                               ..+.......++      ..+++++||++|.|++++++.|.+.+.
T Consensus       216 ---------~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          216 ---------RHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ---------HHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                     001111111111      247899999999999999999988765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.64  E-value=7.2e-17  Score=126.63  Aligned_cols=116  Identities=16%  Similarity=0.221  Sum_probs=76.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCC---CcccCceeeeeeEEEEECCe-----------------------E-----
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFP---EVYVPTVFENYVADIEVDSK-----------------------Q-----   52 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------------------~-----   52 (192)
                      ..++|+|+|.+|+|||||+|+|++..+.   ....+++. ... .+.....                       +     
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~-~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD-CFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC-SEE-EEECCSSSEEECCC------------------CCCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc-eEE-EEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            4579999999999999999999998864   22222221 110 0000000                       0     


Q ss_pred             ------------EEEEEEeCCCCCc-----------ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCC
Q psy14754         53 ------------VELALWDTAGQED-----------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN  109 (192)
Q Consensus        53 ------------~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  109 (192)
                                  ..+.+|||||...           |...+..++..+|++|+|+|+++....... ..|+..+...  +
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--E  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--G
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--C
Confidence                        2589999999764           223444556789999999999874322222 3455555443  6


Q ss_pred             CcEEEEeecccccCC
Q psy14754        110 VPIILVGNKKDLRND  124 (192)
Q Consensus       110 ~p~ivv~nK~D~~~~  124 (192)
                      .|+++|+||+|+...
T Consensus       219 ~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          219 DKIRVVLNKADMVET  233 (550)
T ss_dssp             GGEEEEEECGGGSCH
T ss_pred             CCEEEEEECCCccCH
Confidence            899999999999753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.64  E-value=1.6e-15  Score=122.48  Aligned_cols=116  Identities=16%  Similarity=0.076  Sum_probs=79.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC--------CCCCc--c--------cCceee-eeeEEEEEC-----CeEEEEEEEeCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD--------QFPEV--Y--------VPTVFE-NYVADIEVD-----SKQVELALWDTA   61 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~--------~~~~~--~--------~~~~~~-~~~~~~~~~-----~~~~~~~l~D~~   61 (192)
                      .+|+|+|+.++|||||..+|+..        .....  +        ...++- .....+.+.     ...+.+.|+|||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            58999999999999999998731        11110  0        000000 001122222     236789999999


Q ss_pred             CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      ||.+|.......++-+|++|+|+|+..+-..+.  +..+....+.  +.|.++++||+|.....
T Consensus        94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT--~~v~~~a~~~--~lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS--ETVWRQANKY--GVPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHHH--TCCEEEEEECSSSTTCC
T ss_pred             CCcccHHHHHHHHHHhCeEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEccccccCcc
Confidence            999999999999999999999999998633332  3444444444  89999999999986543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.59  E-value=6.4e-15  Score=118.38  Aligned_cols=159  Identities=16%  Similarity=0.144  Sum_probs=94.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee------------------------------------------
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY------------------------------------------   42 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------   42 (192)
                      -.+|+|+|.+++|||||+|+|++..+........+...                                          
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g  130 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  130 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence            46999999999999999999999776221111000000                                          


Q ss_pred             ----------eEEEEECCeEEEEEEEeCCCCCccc-------------ccccccC-CCCCEEEEEEECCChhhhhchhhh
Q psy14754         43 ----------VADIEVDSKQVELALWDTAGQEDYD-------------RLRPLSY-PDTDVILMCFSIDSPDSLENIPEK   98 (192)
Q Consensus        43 ----------~~~~~~~~~~~~~~l~D~~g~~~~~-------------~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~   98 (192)
                                ...+... ....+.++||||-....             .....++ ..+|++++|+|++.....+.. ..
T Consensus       131 ~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~  208 (772)
T 3zvr_A          131 TNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  208 (772)
T ss_dssp             STTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HH
T ss_pred             CCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HH
Confidence                      0000000 11247899999954311             1111222 578999999999875322221 13


Q ss_pred             hHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754         99 WTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus        99 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      +...+...  +.|+++|+||+|+............  .+.        +....+..+++.+||+++.|++++++.+.+.
T Consensus       209 ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~~il~--~~~--------~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLE--NKL--------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHCTT--CSSEEEEEECTTSSCTTCCSHHHHT--TCS--------SCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHhc--CCCEEEEEeCcccCCcchhhHHHHH--HHh--------hhhhccCCceEEecccccccchhHHHHHHHH
Confidence            44444443  7899999999999864321111000  000        0001122467889999999999999998863

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=2.7e-14  Score=106.64  Aligned_cols=82  Identities=15%  Similarity=0.105  Sum_probs=53.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCc--eeeeeeEEEEECC-------------------eEEEEEEEeCCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--VFENYVADIEVDS-------------------KQVELALWDTAGQE   64 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~~   64 (192)
                      ++|+++|.+|+|||||+|+|.+........+.  ...+.. ...+..                   ....+.+|||||..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            68999999999999999999986432211111  111111 111111                   23579999999987


Q ss_pred             cccccc-------cccCCCCCEEEEEEECCC
Q psy14754         65 DYDRLR-------PLSYPDTDVILMCFSIDS   88 (192)
Q Consensus        65 ~~~~~~-------~~~~~~~~~~i~v~d~~~   88 (192)
                      .+.+..       ...++.+|++++|+|+++
T Consensus        81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            653221       123678999999999986

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.57  E-value=4.8e-15  Score=110.71  Aligned_cols=115  Identities=16%  Similarity=0.089  Sum_probs=74.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccccc-------ccccCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRL-------RPLSYPDT   77 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~   77 (192)
                      .+|+++|.||+|||||+|+|++........|.++... .-.+.+.  +..++++||||...-.+.       ....++.+
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~--~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a  150 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK--GAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC  150 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET--TEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC--CcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence            4799999999999999999999775544444444332 2233343  457899999995432221       12345679


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      |++++|+|++++..-.......+..........|.++++||.|..
T Consensus       151 d~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          151 NLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             SEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             CccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            999999999987432222122222222223468999999999974

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.57  E-value=3.7e-15  Score=106.96  Aligned_cols=125  Identities=15%  Similarity=0.051  Sum_probs=68.9

Q ss_pred             EEEEEEeCCCCCccccccc------ccCCCCCEEEEEEECCChhhhhchhhhh---HHHHhhhCCCCcEEEEeecccccC
Q psy14754         53 VELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      +.+.+|||||.........      ..+.. +++++++|+....+.......+   ......  .+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence            5799999999866432211      13355 8888898875432222211111   111111  2689999999999865


Q ss_pred             CccchhhhhhccCCCCCHH--------------HHHHHHHHcCC-ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        124 DPNTIKELNKMKQEPVKPE--------------EGRAMAQKINA-FAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ..........+........              ...++.+.++. .+++++||++++|+++++++|.+.+..
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            3211000000000000000              00011233332 478999999999999999999887654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.53  E-value=2.9e-15  Score=111.07  Aligned_cols=105  Identities=13%  Similarity=0.138  Sum_probs=63.1

Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL  131 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  131 (192)
                      +..+.++||||...-.   ......+|.+++++|....+..+.+.. .   +.    ..|.++++||+|+.....     
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~-~---i~----~~~~ivvlNK~Dl~~~~~-----  210 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK-G---IF----ELADMIAVNKADDGDGER-----  210 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT-T---HH----HHCSEEEEECCSTTCCHH-----
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH-H---Hh----ccccEEEEEchhccCchh-----
Confidence            4578999999964321   123468899999999875543322221 1   11    245688889999754211     


Q ss_pred             hhccCCCCCHHHHHHHHHHc---C------CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        132 NKMKQEPVKPEEGRAMAQKI---N------AFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                             ......+++....   .      ..+++.+||+++.|++++++.|.+...
T Consensus       211 -------~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          211 -------RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             -------HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                   1111122222211   1      247889999999999999999988654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.47  E-value=2e-14  Score=97.83  Aligned_cols=111  Identities=5%  Similarity=-0.002  Sum_probs=70.7

Q ss_pred             CCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhh---HHHHhhh--CCCCcEEEEeecc-cccCCccchhhhhh
Q psy14754         60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF--CPNVPIILVGNKK-DLRNDPNTIKELNK  133 (192)
Q Consensus        60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~  133 (192)
                      .+||...+..|.++++++|++|||+|.+|.+.++ ..+.+   ...+...  ..+.|++|++||. |+...-...+..+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            3478999999999999999999999999975544 33333   2333332  2589999999995 67554333222222


Q ss_pred             ccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        134 MKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +....        +   ...+.+..|||++|+|+.+.++|+...+..++
T Consensus       188 L~L~~--------l---~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          188 LHLNL--------L---NHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             TTGGG--------G---CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             cCCcC--------C---CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            21110        1   13378899999999999999999988775543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.42  E-value=2.9e-13  Score=98.95  Aligned_cols=110  Identities=20%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             eEEEEEEEe-CCC-----CCcccccccccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         51 KQVELALWD-TAG-----QEDYDRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        51 ~~~~~~l~D-~~g-----~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      +.+.+..+| +.|     ++++.......+.++|++++|+|++++. ++..+ +.|+..+..  .++|+++|+||+|+.+
T Consensus        48 D~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~  124 (302)
T 2yv5_A           48 DYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLN  124 (302)
T ss_dssp             CEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCC
T ss_pred             eEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCC
Confidence            345555555 223     6777788888899999999999999886 66655 467776655  3899999999999965


Q ss_pred             CccchhhhhhccCCCCC-HHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754        124 DPNTIKELNKMKQEPVK-PEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR  176 (192)
Q Consensus       124 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~  176 (192)
                      ..            .+. .++...+.+.++ ++++++||+++.|++++++.+..
T Consensus       125 ~~------------~v~~~~~~~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          125 EE------------EKKELERWISIYRDAG-YDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             HH------------HHHHHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHTTT
T ss_pred             cc------------ccHHHHHHHHHHHHCC-CeEEEEECCCCCCHHHHHhhccC
Confidence            21            001 233445555556 58999999999999999988654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.36  E-value=3.6e-13  Score=101.06  Aligned_cols=89  Identities=19%  Similarity=0.117  Sum_probs=48.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCe---------------EEEEEEEeCCCCCccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSK---------------QVELALWDTAGQEDYD   67 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~l~D~~g~~~~~   67 (192)
                      ..++|+++|.+|+|||||+|+|.+..+.....|+.+... ...+.+.+.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            467999999999999999999998865333333332221 122222221               2359999999977654


Q ss_pred             c-------cccccCCCCCEEEEEEECCChhhh
Q psy14754         68 R-------LRPLSYPDTDVILMCFSIDSPDSL   92 (192)
Q Consensus        68 ~-------~~~~~~~~~~~~i~v~d~~~~~~~   92 (192)
                      +       .+...++.+|++++|+|+++.+++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            3       334556789999999999875443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.32  E-value=6.6e-13  Score=94.70  Aligned_cols=111  Identities=5%  Similarity=-0.007  Sum_probs=75.4

Q ss_pred             CCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhH---HHHhhh--CCCCcEEEEeec-ccccCCccchhhhhh
Q psy14754         60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT---PEVKHF--CPNVPIILVGNK-KDLRNDPNTIKELNK  133 (192)
Q Consensus        60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~--~~~~p~ivv~nK-~D~~~~~~~~~~~~~  133 (192)
                      .+||...+..|.++++++|++|||+|.+|.+.++ ..+.+.   ..+...  ..+.|++|++|| .|+..+-...+..+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4678999999999999999999999999987654 322222   333322  368999999997 588654333322222


Q ss_pred             ccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        134 MKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +....           ....+.+..|||++|+|+.+.++|+.+.+..++
T Consensus       273 L~L~~-----------l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          273 LHLNL-----------LNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             TTGGG-----------GCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             cCCcc-----------CCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            21110           012367899999999999999999998875543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.23  E-value=4.5e-12  Score=95.11  Aligned_cols=113  Identities=10%  Similarity=0.053  Sum_probs=66.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC-----CCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc--------c
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD-----QFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR--------P   71 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~   71 (192)
                      ..+|+++|.+|+|||||+|+|++.     ........+.++.......+..   .+.++||||........        .
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            468999999999999999999986     2222111112222222233332   27999999954322111        1


Q ss_pred             cc--CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         72 LS--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        72 ~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      ..  -+..+.++++++....--+..+  ..+..+..  .+.|+++++||.|..+.
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTVHR  289 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred             HHhcccccCceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCccccc
Confidence            11  1568999999987533111122  11122222  26899999999998763

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.14  E-value=9.7e-12  Score=93.22  Aligned_cols=113  Identities=13%  Similarity=0.082  Sum_probs=65.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCC------cccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc-------
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPE------VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP-------   71 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------   71 (192)
                      ..+|+++|.+|+|||||+|+|++.....      ....+.++.......+...   +.++||||.........       
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            4689999999999999999999863211      1111122222223333332   79999999543221110       


Q ss_pred             ---ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         72 ---LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        72 ---~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                         ...+..+.++++++......+..+  ..+..+..  .+.|+++++||.|..+.
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred             HHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccccc
Confidence               113567888899887432112221  11222222  26899999999998763

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.13  E-value=8.6e-11  Score=88.10  Aligned_cols=98  Identities=22%  Similarity=0.304  Sum_probs=72.5

Q ss_pred             CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCH
Q psy14754         62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKP  141 (192)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  141 (192)
                      ..+.|.+......+.++++++|+|++++.      ..|...+.++..+.|+++|+||+|+.+..             ...
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-------------~~~  115 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-------------VKH  115 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-------------SCH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-------------cCH
Confidence            45678888888888999999999999863      35666666666689999999999997531             122


Q ss_pred             HHH----HHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        142 EEG----RAMAQKINA--FAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       142 ~~~----~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      +..    ..+++..+.  .+++.+||+++.|++++++.+.+..
T Consensus       116 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          116 DKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            222    233444442  2789999999999999999997654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.12  E-value=3.4e-10  Score=81.33  Aligned_cols=118  Identities=20%  Similarity=0.213  Sum_probs=65.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCccc--------CceeeeeeEEEEECCeE--EEEEEEeCCCCCcccc------
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYV--------PTVFENYVADIEVDSKQ--VELALWDTAGQEDYDR------   68 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~l~D~~g~~~~~~------   68 (192)
                      +++++++|++|||||||++.|++...+....        +.........+.+....  ..++++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            6899999999999999999999854332210        00000011111122222  2689999998321100      


Q ss_pred             ----------------------cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754         69 ----------------------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        69 ----------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  126 (192)
                                            .....+..+++.++++|... +.+......++..+..   ..++++|++|+|.....+
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~~e  157 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---VVNIIPVIAKADTMTLEE  157 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---TSEEEEEETTGGGSCHHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---cCcEEEEEeccccCCHHH
Confidence                                  00112224688888888553 2233333344455544   389999999999876433

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.06  E-value=3e-09  Score=80.59  Aligned_cols=168  Identities=11%  Similarity=0.106  Sum_probs=88.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce-eeee-eEEEEECCeE-EEEEEEeCCCCCcccccc-----cccCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENY-VADIEVDSKQ-VELALWDTAGQEDYDRLR-----PLSYPD   76 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~-~~~~l~D~~g~~~~~~~~-----~~~~~~   76 (192)
                      ...++++|++|||||||+|.+.+...+....-.. .... ...+.+.... -.+.+||++|........     ...+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            4479999999999999999999854332211110 0000 0011111111 147899999843211100     111223


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH----HHHHH----
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE----GRAMA----  148 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----  148 (192)
                      .+..++ ++...   ++..+-.+...+...  +.|+++|.||.|+.--++...-+     ......+    .+++.    
T Consensus       149 ~~~~~~-lS~G~---~~kqrv~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgL-----D~~~~~~l~~~l~~l~~~~l  217 (413)
T 1tq4_A          149 YDFFII-ISATR---FKKNDIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEP-----QTFDKEKVLQDIRLNCVNTF  217 (413)
T ss_dssp             CSEEEE-EESSC---CCHHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCC-----TTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCeEE-eCCCC---ccHHHHHHHHHHHhc--CCCeEEEEecCcccccCcccccC-----CHHHHHHHHHHHHHHHHHHH
Confidence            455554 66652   111112333444433  68999999999985211111100     1111222    22232    


Q ss_pred             HH--cCCceEEEecc--CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        149 QK--INAFAYLECSA--KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       149 ~~--~~~~~~~~~Sa--~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ..  .....++.+|+  ..+.|++++.+.+.+.+.+..+
T Consensus       218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~  256 (413)
T 1tq4_A          218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  256 (413)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence            11  12235788999  6677899999999988876653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.04  E-value=2.8e-10  Score=85.36  Aligned_cols=103  Identities=21%  Similarity=0.242  Sum_probs=71.7

Q ss_pred             CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCH
Q psy14754         62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKP  141 (192)
Q Consensus        62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  141 (192)
                      .++.|++......+.++++++|+|++++.+      .|...+.++..+.|+++|+||+|+.+......         ...
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~---------~~~  121 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKYP---------KLL  121 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHH---------HHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCHH---------HHH
Confidence            477888888888888999999999998752      34445555556899999999999976321000         001


Q ss_pred             HHHHHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        142 EEGRAMAQKINA--FAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       142 ~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      +....+.+..+.  .+++.+||+++.|++++++.+.+...
T Consensus       122 ~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          122 RWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            122233444442  37899999999999999999877653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.02  E-value=6.2e-11  Score=91.84  Aligned_cols=165  Identities=13%  Similarity=0.104  Sum_probs=84.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHh------hCCCC----CcccCcee-------eee-eEEEE-----------------EC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFS------KDQFP----EVYVPTVF-------ENY-VADIE-----------------VD   49 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~~~~-------~~~-~~~~~-----------------~~   49 (192)
                      ...|+++|++|+||||++++|.      +.+..    +.+.+...       ... ...+.                 ..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~  180 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK  180 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence            5579999999999999999998      33210    11011000       000 00000                 00


Q ss_pred             CeEEEEEEEeCCCCCcccc-cccc---c--CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcE-EEEeeccccc
Q psy14754         50 SKQVELALWDTAGQEDYDR-LRPL---S--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLR  122 (192)
Q Consensus        50 ~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~  122 (192)
                      ..++.+.++||||...... .+..   .  +..+|.+++|+|+.....  ..  .....+..   ..|+ ++|+||.|..
T Consensus       181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~--~~a~~~~~---~~~i~gvVlNK~D~~  253 (504)
T 2j37_W          181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CE--AQAKAFKD---KVDVASVIVTKLDGH  253 (504)
T ss_dssp             HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HH--HHHHHHHH---HHCCCCEEEECTTSC
T ss_pred             HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HH--HHHHHHHh---hcCceEEEEeCCccc
Confidence            1345789999999653221 1100   0  126899999999987532  11  12223332   2675 8999999986


Q ss_pred             CCccchhhh-hhccCCCCC-HHHHHHHHHHcCCceEEEeccCCcCC-HHHHHHHHHHH
Q psy14754        123 NDPNTIKEL-NKMKQEPVK-PEEGRAMAQKINAFAYLECSAKSKEG-VREVFETATRA  177 (192)
Q Consensus       123 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~i~~~  177 (192)
                      ......-.. ..... .+. ...+..+.+-....|.+.+|+..|.| ++++++++.+.
T Consensus       254 ~~~g~~l~~~~~~g~-PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          254 AKGGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCTHHHHHHHHHCC-CEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cchHHHHHHHHHhCC-CeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            432211000 00000 000 00000000000112345589999999 99999998866

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.01  E-value=5.6e-10  Score=83.98  Aligned_cols=85  Identities=19%  Similarity=0.128  Sum_probs=55.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeee-eEEEEECCe---------------EEEEEEEeCCCCCcc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY-VADIEVDSK---------------QVELALWDTAGQEDY   66 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~l~D~~g~~~~   66 (192)
                      ...+++++|++|||||||+|+|.+... .....|+++... .-.+.+.+.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            356899999999999999999999765 333233322221 222233321               135899999995432


Q ss_pred             cc-------cccccCCCCCEEEEEEECCC
Q psy14754         67 DR-------LRPLSYPDTDVILMCFSIDS   88 (192)
Q Consensus        67 ~~-------~~~~~~~~~~~~i~v~d~~~   88 (192)
                      .+       .+...++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22       22334578999999999874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.98  E-value=3.2e-09  Score=80.48  Aligned_cols=116  Identities=17%  Similarity=0.230  Sum_probs=61.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccC---ceeeeeeEEEEECC--eEEEEEEEeCCCCCcccc------------
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP---TVFENYVADIEVDS--KQVELALWDTAGQEDYDR------------   68 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~------------   68 (192)
                      ++++|+|++|||||||++.|++..+......   .........+.+..  -...++++|++|......            
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            5699999999999999999998754321111   11111111222222  223689999998432100            


Q ss_pred             -------------ccc--ccCCCC--CE-EEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754         69 -------------LRP--LSYPDT--DV-ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        69 -------------~~~--~~~~~~--~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  126 (192)
                                   ...  .....+  |+ ++++.|...+  +...+..++..+.   .+.|+|+|.||+|.....+
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E  193 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD---SKVNIIPIIAKADAISKSE  193 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh---hCCCEEEEEcchhccchHH
Confidence                         000  012232  33 4555555433  3333223444443   4899999999999876433

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.87  E-value=2.4e-09  Score=77.46  Aligned_cols=58  Identities=22%  Similarity=0.225  Sum_probs=35.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE   64 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   64 (192)
                      ..++|+++|.+|+|||||+|+|.+.........+.++.....+....   .+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            56899999999999999999999876443322222222111222222   58999999953

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.86  E-value=4.6e-09  Score=75.93  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=66.9

Q ss_pred             EEeCCCCC-cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc
Q psy14754         57 LWDTAGQE-DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK  135 (192)
Q Consensus        57 l~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  135 (192)
                      +-..|||. .........++.+|+++.|+|+.++.+...      ..+.++..++|.++|+||+|+.+...         
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~------~~l~~~l~~kp~ilVlNK~DL~~~~~---------   67 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN------PMIEDILKNKPRIMLLNKADKADAAV---------   67 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC------HHHHHHCSSSCEEEEEECGGGSCHHH---------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC------HHHHHHHCCCCEEEEEECcccCCHHH---------
Confidence            44678875 344455567789999999999999866543      11222224899999999999975100         


Q ss_pred             CCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                           .+...++.+..+ ++++.+||+++.|++++++.+.+.+..
T Consensus        68 -----~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           68 -----TQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             -----HHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHHH
Confidence                 112223333334 588999999999999999988877654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.77  E-value=3.7e-09  Score=75.65  Aligned_cols=57  Identities=16%  Similarity=0.190  Sum_probs=35.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED   65 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   65 (192)
                      ++++++|.+|+|||||+|+|.+............+.....+...   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            58999999999999999999987764332222222222222222   2579999999643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.64  E-value=3.2e-08  Score=75.59  Aligned_cols=112  Identities=17%  Similarity=0.158  Sum_probs=62.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC------CC----CCcccC----------------------ceeee--eeEEEEECC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD------QF----PEVYVP----------------------TVFEN--YVADIEVDS   50 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~------~~----~~~~~~----------------------~~~~~--~~~~~~~~~   50 (192)
                      +..|+++|++|+||||++++|...      +.    .+.+.+                      ++.+.  .........
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            357999999999999999998762      11    000000                      00000  000000011


Q ss_pred             eEEEEEEEeCCCCCcccccc------cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCC-c-EEEEeeccccc
Q psy14754         51 KQVELALWDTAGQEDYDRLR------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV-P-IILVGNKKDLR  122 (192)
Q Consensus        51 ~~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~  122 (192)
                      ..+.+.++||||........      ...+..+|.+++|+|+....   +.. .....+.   +.. | ..+|+||.|..
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~-~~~~~~~---~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAG-IQAKAFK---EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHH-HHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHH-HHHHHHh---hcccCCeEEEEeCCCCc
Confidence            34578999999965421100      11223689999999987653   111 1122222   245 6 88999999975


Q ss_pred             C
Q psy14754        123 N  123 (192)
Q Consensus       123 ~  123 (192)
                      .
T Consensus       252 ~  252 (432)
T 2v3c_C          252 A  252 (432)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.63  E-value=5.7e-08  Score=74.03  Aligned_cols=113  Identities=17%  Similarity=0.184  Sum_probs=61.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh------CCC----CCcccCce-------eeeeeEEEEE------------------C
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK------DQF----PEVYVPTV-------FENYVADIEV------------------D   49 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~------~~~----~~~~~~~~-------~~~~~~~~~~------------------~   49 (192)
                      +..|+++|++|+||||++.+|..      .+.    .+.+.+..       .......+..                  .
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999988864      111    01111100       0000000000                  0


Q ss_pred             CeEEEEEEEeCCCCCccccccc------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         50 SKQVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        50 ~~~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      ..++.+.++||||.........      .....+|.+++|+|+.......    .....+...  -.+..||+||.|...
T Consensus       180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~----~~a~~f~~~--~~i~gVIlTKlD~~~  253 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY----NQALAFKEA--TPIGSIIVTKLDGSA  253 (443)
T ss_dssp             HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHHS--CTTEEEEEECCSSCS
T ss_pred             hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH----HHHHHHHhh--CCCeEEEEECCCCcc
Confidence            1225789999999543221110      1122578999999998653221    122333322  245679999999764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.49  E-value=1e-07  Score=75.22  Aligned_cols=62  Identities=23%  Similarity=0.088  Sum_probs=38.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce--eeeeeEEE--EE-CCeEEEEEEEeCCCCCc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--FENYVADI--EV-DSKQVELALWDTAGQED   65 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~--~~-~~~~~~~~l~D~~g~~~   65 (192)
                      ...+|+|+|.+|+|||||+|+|++....-....++  .+......  .. ...+..+.++||||...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            45789999999999999999999876421111111  11111110  01 22345789999999654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.42  E-value=2.3e-07  Score=73.97  Aligned_cols=25  Identities=28%  Similarity=0.592  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .|+|+|+.|||||||++.+.+-..+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            4999999999999999999987544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.41  E-value=1.7e-07  Score=68.22  Aligned_cols=92  Identities=11%  Similarity=0.071  Sum_probs=52.5

Q ss_pred             EEEEEEEeCCCCCc--cccccc------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeeccccc
Q psy14754         52 QVELALWDTAGQED--YDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLR  122 (192)
Q Consensus        52 ~~~~~l~D~~g~~~--~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~  122 (192)
                      .+.+.++||||...  ......      .....+|.+++|+|+...   ++..+ ....+..   ..| ..+|+||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~-~~~~~~~---~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYD-LASKFNQ---ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHH-HHHHHHH---TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHH-HHHHHHh---hCCCCEEEEeCCCCC
Confidence            45689999999765  211111      123368999999998643   22211 1222222   466 78999999974


Q ss_pred             CCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHH
Q psy14754        123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE  169 (192)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  169 (192)
                      ..                ...........+ .|+..++  .|+++++
T Consensus       253 ~~----------------~g~~~~~~~~~~-~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 AK----------------GGGALSAVAATG-ATIKFIG--TGEKIDE  280 (297)
T ss_dssp             TT----------------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred             cc----------------hHHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence            31                222334555555 4776665  4555543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.40  E-value=2.4e-07  Score=66.28  Aligned_cols=94  Identities=10%  Similarity=-0.024  Sum_probs=59.7

Q ss_pred             CCCCCc-ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCC
Q psy14754         60 TAGQED-YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEP  138 (192)
Q Consensus        60 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  138 (192)
                      .|||.. ........+.++|+++.|+|+.++.+.....  +. .+     ++|.++|+||+|+.+...            
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~------------   63 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT------------   63 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH------------
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH------------
Confidence            466543 2234455678999999999999986654421  11 11     799999999999975210            


Q ss_pred             CCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        139 VKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                        .+...++.+..+ +++ .+||+++.|++++++.+...
T Consensus        64 --~~~~~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           64 --TKKWVEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             --HHHHHHHHHHTT-CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             --HHHHHHHHHHcC-CeE-EEECCCCcCHHHHHHHHHHh
Confidence              112223333334 477 99999999999998877553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.38  E-value=2.2e-07  Score=70.76  Aligned_cols=91  Identities=9%  Similarity=0.031  Sum_probs=51.5

Q ss_pred             EEEEEEEeCCCCCc--ccccc----c--ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         52 QVELALWDTAGQED--YDRLR----P--LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        52 ~~~~~l~D~~g~~~--~~~~~----~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      .+.+.++||||...  .....    .  ...-..+.+++|+|+.......    .....+...  -.+..||+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~----~~a~~f~~~--~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY----DLASRFHQA--SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH----HHHHHHHHH--CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH----HHHHHHhcc--cCCcEEEEecccccc
Confidence            45678999999644  11110    0  0111468999999998753222    222333332  256789999999754


Q ss_pred             CccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCH
Q psy14754        124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGV  167 (192)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (192)
                      .                ...........+ .|+..++.  |+++
T Consensus       253 ~----------------~G~als~~~~~g-~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 K----------------GGGALSAVVATG-ATIKFIGT--GEKI  277 (433)
T ss_dssp             C----------------HHHHHHHHHHHT-CEEEEEEC--CSSS
T ss_pred             c----------------chHHHHHHHHHC-CCEEEEEC--CCCh
Confidence            2                223334444445 58777765  4443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.30  E-value=2.7e-07  Score=67.30  Aligned_cols=91  Identities=15%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ  149 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (192)
                      ....+.++|.+++|+|+.++..-....+.++.....  .++|.+||+||+|+.++....          ..........+
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~----------~~~~~~~~~y~  147 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTE----------DTIQAYAEDYR  147 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHH----------HHHHHHHHHHH
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhH----------HHHHHHHHHHH
Confidence            334577999999999999875333333344443333  389999999999997631100          00111222223


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHH
Q psy14754        150 KINAFAYLECSAKSKEGVREVFET  173 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~  173 (192)
                      ..+ ++++.+||.++.|++++++.
T Consensus       148 ~~g-~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          148 NIG-YDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             HHT-CCEEECCHHHHTTCTTTGGG
T ss_pred             hCC-CeEEEEecCCCCCHHHHHhh
Confidence            334 58899999999998877654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.23  E-value=6.4e-07  Score=66.03  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .--++++|+.||||||+++.+.+
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999876

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.04  E-value=3.6e-06  Score=64.38  Aligned_cols=23  Identities=17%  Similarity=0.185  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-|.|+|++++|||||+|+|++.
T Consensus        68 ~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           68 VAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHhhh
Confidence            34889999999999999999863

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.94  E-value=5.3e-05  Score=56.38  Aligned_cols=84  Identities=20%  Similarity=0.269  Sum_probs=52.7

Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH---H
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA---Q  149 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  149 (192)
                      .+.++|.+++|.+ .++..-....+.++......  ++|.+||+||+|+.++..              ......+.   .
T Consensus       127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~--------------~~~~~~~~~~y~  189 (358)
T 2rcn_A          127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG--------------MDFVNEQMDIYR  189 (358)
T ss_dssp             EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH--------------HHHHHHHHHHHH
T ss_pred             HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh--------------HHHHHHHHHHHH
Confidence            3568999998755 45643222323444333333  789999999999976210              01122222   2


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHH
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETA  174 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i  174 (192)
                      ..+ ++++.+||.++.|++++...+
T Consensus       190 ~~G-~~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          190 NIG-YRVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             TTT-CCEEECBTTTTBTHHHHHHHH
T ss_pred             hCC-CcEEEEecCCCcCHHHHHHhc
Confidence            334 588999999999999887654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.80  E-value=1.3e-05  Score=53.88  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .+++++|++|||||||++.+.+..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999887643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.76  E-value=2.4e-07  Score=71.67  Aligned_cols=106  Identities=15%  Similarity=0.053  Sum_probs=58.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee---eeEEEEECCeEEEEEEEeCCCCCc--ccccc--------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN---YVADIEVDSKQVELALWDTAGQED--YDRLR--------   70 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------   70 (192)
                      .+..|+++|.+||||||+.++|........ ..+..-.   ...  ...+......+||..|.+.  .+..+        
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~--~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~  114 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRR--DMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV  114 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHH--HHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhh--hhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999876421100 0010000   000  0001112346788888632  23332        


Q ss_pred             cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEe
Q psy14754         71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG  116 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  116 (192)
                      ..++....+.++|+|.++. ..... +.|...++..  +.+++++-
T Consensus       115 ~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~  156 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE  156 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred             HHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence            3344456788999999986 23322 4566666554  34444443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.76  E-value=1.1e-05  Score=58.82  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -.++++|++|||||||+|.|.+...
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CEEEEECCCCCCHHHHHHHhccccc
Confidence            3689999999999999999987543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.74  E-value=1.9e-05  Score=54.93  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=21.9

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      |+.....|+++|++||||||+.+.|.+
T Consensus         1 mm~~~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            1 MTAIAPVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             --CCSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            444557899999999999999998865

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.71  E-value=2e-05  Score=52.96  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      --++++|++|||||||++.|.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999998743

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.67  E-value=0.00013  Score=53.15  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -.++++|++|||||||+|.+. ...
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            357899999999999999998 543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.67  E-value=1.8e-05  Score=60.54  Aligned_cols=65  Identities=17%  Similarity=0.087  Sum_probs=38.0

Q ss_pred             EEEEEEEeCCCCCccccccc------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccC
Q psy14754         52 QVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRN  123 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  123 (192)
                      ++.+.++||||.........      ..+...+.+++|+|+....   ... .....+..   ..+ .-+|+||.|...
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~-~~~~~f~~---~l~i~gvVlnK~D~~~  254 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAA-NTAKAFNE---ALPLTGVVLTKVDGDA  254 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THH-HHHHHHHH---HSCCCCEEEECTTSSS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHH-HHHHHHhc---cCCCeEEEEecCCCCc
Confidence            45789999999654321111      1133678999999987542   221 11222222   345 357999999754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.67  E-value=2.5e-05  Score=53.38  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.++|+|++|||||||++.+.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999998863

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.64  E-value=3.4e-05  Score=53.08  Aligned_cols=29  Identities=24%  Similarity=0.258  Sum_probs=23.0

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |+....-|+++|++||||||+++.|....
T Consensus         4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            4 MTERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             -CCCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             ccCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            33344568999999999999999998764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.58  E-value=3.8e-05  Score=52.47  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.58  E-value=4.3e-05  Score=52.20  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...|+++|++||||||+.+.|...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.57  E-value=4.4e-05  Score=53.90  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~   26 (192)
                      ....|+|+|++||||||+++.|.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999998

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.56  E-value=3.9e-05  Score=51.82  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.|+++|++||||||+++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999876

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.54  E-value=4.7e-05  Score=52.86  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      --++|+|++|||||||++.+.+...
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            3578999999999999999987543

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.54  E-value=4.7e-05  Score=52.32  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -++++|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            37899999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.53  E-value=5e-05  Score=51.72  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .--|+|+|++|||||||++.|.+..
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3457899999999999999998753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.53  E-value=5.4e-05  Score=50.26  Aligned_cols=24  Identities=17%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...|+++|++||||||+.+.|.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.53  E-value=4.7e-05  Score=52.36  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...|+|+|++|||||||++.+.+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.53  E-value=4.1e-05  Score=50.97  Aligned_cols=20  Identities=20%  Similarity=0.368  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCchhHHHHHHh
Q psy14754          7 KLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~   26 (192)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            37899999999999999754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.52  E-value=5.1e-05  Score=52.60  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++|+|++|||||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.52  E-value=6.5e-05  Score=50.11  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +..|++.|++||||||+.+.|..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            35699999999999999999987

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.51  E-value=5.8e-05  Score=50.71  Aligned_cols=27  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      |......|+++|++||||||+.+.|..
T Consensus         1 m~~~~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            1 MKKNLTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             ----CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            444456799999999999999999865

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.50  E-value=6e-05  Score=50.91  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |+|+||+|||||||+++|+...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.45  E-value=7.6e-05  Score=49.06  Aligned_cols=23  Identities=26%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -++++|+.|||||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48899999999999999998865

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.44  E-value=8.3e-05  Score=52.04  Aligned_cols=27  Identities=15%  Similarity=0.208  Sum_probs=21.2

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      |+..++.|++.|++||||||+.+.+..
T Consensus         5 m~~~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            5 MVSGSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             ----CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            456678999999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.44  E-value=8.1e-05  Score=49.60  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.42  E-value=9.7e-05  Score=51.84  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999987654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.42  E-value=9.7e-05  Score=50.56  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ...-|+++|++||||||+++.|....
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            34568999999999999999987643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.41  E-value=9.8e-05  Score=50.27  Aligned_cols=28  Identities=18%  Similarity=0.124  Sum_probs=23.4

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+.....|+|.|.+||||||+.+.|...
T Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            4 EAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            3456788999999999999999998875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.41  E-value=8.6e-05  Score=50.73  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ...|+++|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468999999999999999998764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.40  E-value=9e-05  Score=50.01  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -++++|++||||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.39  E-value=0.0001  Score=50.87  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.38  E-value=9.7e-05  Score=48.89  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .|++.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.38  E-value=0.00012  Score=50.09  Aligned_cols=24  Identities=13%  Similarity=0.155  Sum_probs=21.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|++.|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999999875

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.37  E-value=0.0001  Score=50.27  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -.|+++|++||||||+++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.37  E-value=0.00011  Score=50.75  Aligned_cols=22  Identities=23%  Similarity=0.182  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.37  E-value=0.00011  Score=48.74  Aligned_cols=20  Identities=25%  Similarity=0.393  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCchhHHHHHH
Q psy14754          6 KKLVIVGDGACGKTCLLIVF   25 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l   25 (192)
                      .-|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.36  E-value=0.00011  Score=49.74  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999988764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.36  E-value=0.00012  Score=51.00  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            378999999999999999987653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.36  E-value=0.00014  Score=54.13  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998654

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.35  E-value=0.00012  Score=50.30  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ++|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988865

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.35  E-value=0.0001  Score=50.65  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...|+|+|+.|||||||++.+.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988763

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.35  E-value=0.00015  Score=51.07  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999988653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.33  E-value=0.00015  Score=48.33  Aligned_cols=24  Identities=13%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-|++.|++||||||+.+.|...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999998864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.33  E-value=0.00016  Score=50.01  Aligned_cols=24  Identities=29%  Similarity=0.223  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999988653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.32  E-value=0.00012  Score=52.21  Aligned_cols=22  Identities=14%  Similarity=0.290  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++|+|+.|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.32  E-value=0.00015  Score=48.64  Aligned_cols=24  Identities=13%  Similarity=0.313  Sum_probs=21.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|++.|++||||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.32  E-value=0.00015  Score=48.89  Aligned_cols=24  Identities=13%  Similarity=0.135  Sum_probs=20.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+..|++.|.+||||||+.+.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999998864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.31  E-value=0.00017  Score=50.88  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+++|++.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.31  E-value=0.00012  Score=51.40  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.31  E-value=0.00016  Score=51.95  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            378999999999999999988653

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.31  E-value=0.00013  Score=49.81  Aligned_cols=22  Identities=27%  Similarity=0.661  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999887

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.31  E-value=0.00012  Score=50.33  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++++|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999876

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.30  E-value=0.00016  Score=51.54  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            378999999999999999988653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.30  E-value=0.00017  Score=51.59  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999998654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.30  E-value=0.00014  Score=48.35  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..|+++|++||||||+.+.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.30  E-value=0.00015  Score=48.43  Aligned_cols=23  Identities=26%  Similarity=0.198  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-++++|++|||||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35889999999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.29  E-value=0.00017  Score=48.67  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|++.|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999865

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.29  E-value=0.00017  Score=51.32  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999988654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.29  E-value=0.00014  Score=52.93  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++|+|++|||||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            5899999999999999998753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.29  E-value=0.00011  Score=49.82  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|++.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.29  E-value=0.00018  Score=50.25  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999988654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.28  E-value=0.00019  Score=50.63  Aligned_cols=24  Identities=13%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            579999999999999999988653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.28  E-value=0.00017  Score=52.51  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPE   32 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~   32 (192)
                      .++++|++|||||||++.+.+...+.
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~~~  196 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLKLR  196 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccccc
Confidence            57899999999999999999865443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.28  E-value=0.00018  Score=50.83  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999988654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.27  E-value=0.00017  Score=48.50  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ...|++.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.26  E-value=0.00019  Score=51.18  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Confidence            478999999999999999987653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.26  E-value=0.0002  Score=48.76  Aligned_cols=25  Identities=12%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..++.|++.|++||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998865

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.26  E-value=0.0002  Score=50.92  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999988653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.00018  Score=49.04  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -.|+++|++||||||+...|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999998875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.26  E-value=0.00013  Score=48.76  Aligned_cols=23  Identities=39%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.+++.|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.25  E-value=0.0002  Score=50.41  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999988653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.25  E-value=0.00016  Score=51.18  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++++|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999986

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.25  E-value=0.00018  Score=48.91  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.25  E-value=0.00016  Score=51.14  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999999987643

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.25  E-value=0.00019  Score=49.04  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.25  E-value=0.00011  Score=51.23  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=14.8

Q ss_pred             eEEEEcCCCCchhHHHHHHh-hC
Q psy14754          7 KLVIVGDGACGKTCLLIVFS-KD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~-~~   28 (192)
                      -++++|++||||||+++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            48899999999999999998 64

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.24  E-value=0.00022  Score=50.59  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~   26 (192)
                      ....|+|+|++||||||+.+.|.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999988

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.24  E-value=0.00016  Score=51.52  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++++|+.|||||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999998764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.24  E-value=0.00022  Score=48.54  Aligned_cols=25  Identities=20%  Similarity=0.163  Sum_probs=22.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ....|++.|.+||||||+.+.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.23  E-value=0.00018  Score=49.02  Aligned_cols=24  Identities=17%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-|+++|++||||||+.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.23  E-value=0.00017  Score=52.73  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-|+|+|++|||||||++.+.+.
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHHhh
Confidence            456899999999999999988764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.22  E-value=0.00018  Score=51.42  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999986

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.22  E-value=0.0002  Score=48.25  Aligned_cols=21  Identities=19%  Similarity=0.270  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.22  E-value=0.00022  Score=48.86  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=21.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|++.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999998875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.22  E-value=0.0002  Score=49.19  Aligned_cols=24  Identities=17%  Similarity=0.142  Sum_probs=21.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|++.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.22  E-value=0.00023  Score=51.23  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999999988654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.21  E-value=0.00018  Score=49.54  Aligned_cols=22  Identities=14%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.21  E-value=0.00025  Score=51.30  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=21.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...-|++.|++||||||+...|...
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.21  E-value=0.00023  Score=51.02  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++|+|+.|||||||++.+.+-..
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999988654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.20  E-value=0.00025  Score=50.35  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999988654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.19  E-value=0.00026  Score=47.56  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...|+++|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999988764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.19  E-value=0.00025  Score=51.94  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      |+.++..|+|+|++|||||||...|..
T Consensus         1 ~~~m~~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            1 MSSLPPAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             --CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            566667899999999999999998875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.18  E-value=0.0003  Score=47.92  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=20.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|++.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.18  E-value=0.0002  Score=49.72  Aligned_cols=23  Identities=22%  Similarity=0.147  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -++|+|++|||||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998743

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.18  E-value=0.00025  Score=49.02  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|+++|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.17  E-value=0.0001  Score=49.07  Aligned_cols=23  Identities=35%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++|+|++|||||||++.+.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999988753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.16  E-value=0.00028  Score=50.48  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999999987653

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.16  E-value=0.00024  Score=49.23  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=21.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.14  E-value=0.00024  Score=50.04  Aligned_cols=23  Identities=17%  Similarity=0.160  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..-|+|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999998876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.14  E-value=0.00032  Score=46.86  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ...|++.|++||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45699999999999999998874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.13  E-value=0.0003  Score=46.37  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.13  E-value=0.00022  Score=53.37  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .-+++|+|++|||||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.13  E-value=0.00022  Score=46.30  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++++|++|+|||||++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988744

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.13  E-value=0.00028  Score=47.30  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.12  E-value=0.00034  Score=49.91  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998875

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.12  E-value=0.00025  Score=52.85  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++|+|+.|||||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.12  E-value=0.00019  Score=51.95  Aligned_cols=27  Identities=15%  Similarity=0.352  Sum_probs=19.8

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      |+...+-|+|.|++||||||+.+.|..
T Consensus         1 Ms~~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            1 MSKKHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             -CTTSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            666777899999999999999988764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.12  E-value=0.00017  Score=52.55  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++|+|+.|||||||++.+.+-..
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             EEEEECCCCchHHHHHHHHHcCCC
Confidence            589999999999999999887643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.11  E-value=0.00035  Score=48.20  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .++.|+|.|.+||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.11  E-value=0.00036  Score=46.96  Aligned_cols=24  Identities=13%  Similarity=0.188  Sum_probs=20.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +...|++.|.+||||||+.+.|..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998865

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.11  E-value=0.00029  Score=49.02  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ...|++.|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.10  E-value=0.00034  Score=47.90  Aligned_cols=24  Identities=29%  Similarity=0.216  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...|+|+|++||||||+.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999998875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.09  E-value=0.0003  Score=50.54  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.08  E-value=0.00034  Score=48.60  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +.|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.07  E-value=0.0004  Score=50.92  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=20.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .++-|+|+|++|||||||++.|.+
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.07  E-value=0.00036  Score=46.27  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..+.++|++|||||||+.++...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999998863

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.06  E-value=0.00037  Score=51.89  Aligned_cols=24  Identities=42%  Similarity=0.715  Sum_probs=21.3

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      ++++|+.|||||||++.+.+-..+
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCchHHHHHHHHhcCCCC
Confidence            789999999999999999987543

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.06  E-value=0.00037  Score=48.15  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..+.|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.06  E-value=0.00034  Score=49.61  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.05  E-value=0.00045  Score=50.03  Aligned_cols=24  Identities=17%  Similarity=0.148  Sum_probs=20.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|+|.|++|||||||++.|..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999987654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.05  E-value=0.00052  Score=46.10  Aligned_cols=25  Identities=16%  Similarity=0.097  Sum_probs=21.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ....|++.|.+||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3567999999999999999988653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.04  E-value=0.00044  Score=51.58  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHhcCCC
Confidence            378999999999999999988654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.04  E-value=0.00034  Score=47.38  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.04  E-value=0.00037  Score=48.21  Aligned_cols=20  Identities=15%  Similarity=0.280  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchhHHHHHHhh
Q psy14754          8 LVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~   27 (192)
                      |+++|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999988765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.04  E-value=0.0003  Score=50.90  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++++|+.|||||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.03  E-value=0.00036  Score=50.87  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -.|+++|+.||||||+++.+.+
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4688999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.03  E-value=0.00041  Score=46.76  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.02  E-value=0.00046  Score=51.33  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            378999999999999999988654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.02  E-value=0.00036  Score=47.59  Aligned_cols=23  Identities=39%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..-|+|+|++||||||+++.|.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998865

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.01  E-value=0.00047  Score=48.17  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=20.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ...+|+++|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.01  E-value=0.00035  Score=51.03  Aligned_cols=24  Identities=25%  Similarity=0.198  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-|+|+|++|||||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.01  E-value=0.00036  Score=52.35  Aligned_cols=22  Identities=14%  Similarity=0.290  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++|+|++||||||+++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.01  E-value=0.00034  Score=51.63  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .++|+|+.|||||||++.+.+-..+
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcC
Confidence            6899999999999999999886543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.00  E-value=0.00033  Score=46.81  Aligned_cols=24  Identities=21%  Similarity=0.102  Sum_probs=16.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.00  E-value=0.00034  Score=52.25  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -.++|+|+.|||||||++.+.+-..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3689999999999999999988643

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.00  E-value=0.00041  Score=49.05  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++++|++|+|||||++.+.+..
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998743

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.99  E-value=0.00052  Score=51.16  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHCCCC
Confidence            378999999999999999988654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.98  E-value=0.00053  Score=51.45  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=20.9

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      ++++|+.|||||||++.+.+-..
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEcCCCchHHHHHHHHHcCCC
Confidence            78999999999999999998654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.98  E-value=0.00035  Score=49.49  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ....|+++|++||||||+...|...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3567999999999999999998653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.98  E-value=0.00049  Score=49.59  Aligned_cols=24  Identities=17%  Similarity=0.111  Sum_probs=21.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998874

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.98  E-value=0.00054  Score=51.11  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            378999999999999999988654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.97  E-value=0.00053  Score=48.77  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.97  E-value=0.00044  Score=50.36  Aligned_cols=21  Identities=33%  Similarity=0.381  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -++++|+.||||||+++.+.+
T Consensus       102 vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.97  E-value=0.00042  Score=52.76  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -++|+|+.|||||||++.+++..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            48999999999999999988743

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.94  E-value=0.0006  Score=51.06  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            368999999999999999988654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.94  E-value=0.00017  Score=49.47  Aligned_cols=21  Identities=29%  Similarity=0.340  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.94  E-value=0.00059  Score=51.13  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            378999999999999999988654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.94  E-value=0.00054  Score=45.29  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998865

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.92  E-value=0.00055  Score=45.71  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.91  E-value=0.00054  Score=47.48  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -++++|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3789999999999999998753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.90  E-value=0.00048  Score=53.82  Aligned_cols=25  Identities=28%  Similarity=0.211  Sum_probs=21.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -.++|+|++||||||+++.+++--.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3599999999999999999987553

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.90  E-value=0.00066  Score=48.01  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=21.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998866

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.88  E-value=0.00049  Score=51.10  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Confidence            378999999999999999988654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.88  E-value=0.00047  Score=48.12  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-|+|.|+.||||||+++.|.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            356899999999999999998875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.87  E-value=0.00065  Score=45.32  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998876

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.87  E-value=0.00058  Score=50.42  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+++.|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.87  E-value=0.00061  Score=48.88  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++++|++|+|||||++.+.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            48999999999999999998753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.85  E-value=0.00075  Score=44.48  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .|++.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988865

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.85  E-value=0.00075  Score=48.91  Aligned_cols=22  Identities=23%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999876

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.83  E-value=0.00067  Score=50.06  Aligned_cols=23  Identities=48%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46999999999999999988764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.82  E-value=0.0006  Score=51.40  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++++|++|||||||++.+.+-.
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            47899999999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.81  E-value=0.00055  Score=50.22  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -++|+|+.|||||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46789999999999999999764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.80  E-value=0.00064  Score=49.21  Aligned_cols=21  Identities=10%  Similarity=0.256  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ++|+|++|+|||||+..+.+.
T Consensus        38 ~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           38 IMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999988764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.80  E-value=0.00072  Score=45.17  Aligned_cols=21  Identities=24%  Similarity=0.161  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -.+|+|+.|||||||+.++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.79  E-value=0.00074  Score=50.31  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      --++++|+.||||||++..+.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            3589999999999999998875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.79  E-value=0.00079  Score=47.64  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .-.|+++|++||||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998865

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.78  E-value=0.0008  Score=46.25  Aligned_cols=21  Identities=29%  Similarity=0.216  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.77  E-value=0.00096  Score=45.25  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...|++.|.+||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999988753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.77  E-value=0.00048  Score=51.27  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            378999999999999999988654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.00071  Score=52.18  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++|+|+.|||||||++.+.+-.
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            68999999999999999988754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.75  E-value=0.001  Score=47.09  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +..+++.|++|+|||++++++.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            446999999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.74  E-value=0.00091  Score=46.73  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.73  E-value=0.00092  Score=45.89  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..-|++.|.+||||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.72  E-value=0.00087  Score=51.90  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      --++|+|+.|||||||++.|.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            3589999999999999998865

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.71  E-value=0.00015  Score=49.49  Aligned_cols=65  Identities=14%  Similarity=0.070  Sum_probs=43.4

Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhh---CCCCcEEEEeeccccc
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLR  122 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~  122 (192)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ... ..+...+...   .++.++.+|+|+.|..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSA-AGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHH-HHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHH-HHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            568999999865  233344556789999999876543  444 2455555433   2367889999999853

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.70  E-value=0.0031  Score=48.26  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=17.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~   26 (192)
                      .-|.|+|+.++|||+|+|.|+
T Consensus        68 ~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           68 VAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCchhHHHHHHH
Confidence            345699999999999999665

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.69  E-value=0.0013  Score=45.80  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=21.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...-|++.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3456999999999999999988764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.69  E-value=0.001  Score=46.27  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-.+++.|++|+|||+++..+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.68  E-value=0.00079  Score=44.80  Aligned_cols=24  Identities=21%  Similarity=0.457  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-.+++.|++|+|||+++..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999888764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.67  E-value=0.00097  Score=49.51  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      +++++|+.|+|||||++.+.+...
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            689999999999999999998753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.67  E-value=0.0012  Score=45.98  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .++++++|+|||||||+...|..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            57899999999999999988755

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.66  E-value=0.0011  Score=44.99  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.65  E-value=0.001  Score=49.87  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999886

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.65  E-value=0.00084  Score=45.87  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+++.|+||+||||++.++.+.
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999888653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.64  E-value=0.0013  Score=42.68  Aligned_cols=19  Identities=32%  Similarity=0.510  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q psy14754          8 LVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~   26 (192)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999965

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.62  E-value=0.0015  Score=44.42  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.60  E-value=0.0013  Score=44.72  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ....|+++|++|+|||+|...|...-
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            34579999999999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.58  E-value=0.00097  Score=47.44  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=21.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .....|++.|..||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.57  E-value=0.0017  Score=51.06  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .++++|+.|||||||++.+.+...+
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~~p   73 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQLIP   73 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5799999999999999999986543

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.56  E-value=0.0013  Score=50.90  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999876

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.53  E-value=0.0017  Score=51.04  Aligned_cols=25  Identities=28%  Similarity=0.554  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      -++++|+.|||||||++.+.+...+
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~p   51 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEIIP   51 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            4789999999999999999986543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.51  E-value=0.002  Score=41.42  Aligned_cols=26  Identities=8%  Similarity=-0.009  Sum_probs=22.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ....|++.|++|+|||++...+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            35579999999999999999987654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.50  E-value=0.0019  Score=45.19  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....|+++|++||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0019  Score=51.52  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .++++|+.|||||||++.+.+...+
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCCC
Confidence            4799999999999999999885543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.50  E-value=0.0017  Score=51.62  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhhccC
Confidence            589999999999999999988653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.49  E-value=0.0015  Score=47.16  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-.+++.|++|+|||++++++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.49  E-value=0.0014  Score=46.98  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.49  E-value=0.0015  Score=50.11  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      +++++|++|+|||||++.+.+...
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            689999999999999999988653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.49  E-value=0.0019  Score=51.39  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            589999999999999999988654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.46  E-value=0.0016  Score=46.66  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...+++.|++|+|||++++++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999999764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.46  E-value=0.0017  Score=44.93  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -+++.|++|+|||+++..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998865

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.46  E-value=0.0018  Score=46.91  Aligned_cols=24  Identities=21%  Similarity=0.109  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +.-+++.|+||+|||+|+.++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456778899999999999998764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.46  E-value=0.0018  Score=45.79  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +..+++.|++|+|||+++.++...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998763

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.44  E-value=0.0018  Score=44.21  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+++.|++|+|||+++..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.44  E-value=0.0017  Score=47.14  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.|++.|++|+|||++++++.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35999999999999999998864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.43  E-value=0.0018  Score=48.46  Aligned_cols=19  Identities=32%  Similarity=0.503  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q psy14754          8 LVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~   26 (192)
                      .+|+|+.|||||||++++.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999976

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.42  E-value=0.0019  Score=51.48  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            689999999999999999987654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.42  E-value=0.0018  Score=49.33  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-|+++|++||||||+.++|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999998763

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.39  E-value=0.0022  Score=44.13  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ++.|++.|++||||||+...|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999988865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.38  E-value=0.0019  Score=45.17  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -+++.|++|+|||||+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999877654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.37  E-value=0.0026  Score=50.80  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .++++|+.|||||||++.+.+...+
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~p  143 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLIP  143 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCCC
Confidence            4799999999999999999886543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.35  E-value=0.0019  Score=46.82  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -.++++|+.|+||||++..|..
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.35  E-value=0.0025  Score=50.11  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .++++|+.|||||||++.+.+...+
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~p  320 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEITA  320 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4789999999999999999986543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.35  E-value=0.0021  Score=47.13  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.+++.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999988763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.33  E-value=0.0023  Score=46.65  Aligned_cols=22  Identities=27%  Similarity=0.279  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      --|+++|++|+||||++..+.+
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHH
Confidence            3588999999999999988764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.33  E-value=0.0028  Score=43.73  Aligned_cols=28  Identities=29%  Similarity=0.274  Sum_probs=23.3

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+....-|++-|.+||||||+++.+...
T Consensus         1 ~m~~g~~i~~eG~~g~GKst~~~~l~~~   28 (216)
T 3tmk_A            1 MMGRGKLILIEGLDRTGKTTQCNILYKK   28 (216)
T ss_dssp             CCCCCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4445677999999999999999998763

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.32  E-value=0.0017  Score=51.67  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            589999999999999998887653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.31  E-value=0.0031  Score=49.68  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .++|+|+.|||||||++.+.+...+
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~p  338 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEEP  338 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5789999999999999999986543

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.31  E-value=0.0025  Score=42.68  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=19.4

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ++|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.30  E-value=0.0029  Score=50.54  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      .++|+|+.|||||||++.+.+...+
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~p  408 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEEP  408 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999986543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.27  E-value=0.0023  Score=47.61  Aligned_cols=23  Identities=22%  Similarity=0.147  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -+.|+|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999988754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.25  E-value=0.0022  Score=47.47  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchhHHHHHHhh
Q psy14754          8 LVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~   27 (192)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999877

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.24  E-value=0.0023  Score=50.92  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcc
Confidence            589999999999999999887653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.21  E-value=0.0025  Score=47.51  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-.++|.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998763

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.21  E-value=0.0028  Score=46.02  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..+++.|++|+|||+++..+..
T Consensus        68 ~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999986654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.20  E-value=0.0031  Score=41.81  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.-|++.|++|+||||+...|...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            346899999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.20  E-value=0.0036  Score=49.99  Aligned_cols=25  Identities=32%  Similarity=0.622  Sum_probs=21.9

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFPE   32 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~~   32 (192)
                      ++++|+.|||||||++.+.+...+.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p~  405 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKPD  405 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCCC
Confidence            7999999999999999999866543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.19  E-value=0.0039  Score=45.48  Aligned_cols=24  Identities=38%  Similarity=0.484  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-|+|+||+|||||||...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            345889999999999999999765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.17  E-value=0.003  Score=47.26  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .++|.|++|+||||+++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            69999999999999999987643

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.17  E-value=0.0039  Score=44.45  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ....+++.|++|+|||+++.++...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.003  Score=48.20  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +-.|++.||||+|||+|+.++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999998864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.0036  Score=47.83  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +-.|++.||||+|||+|+.++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.15  E-value=0.0032  Score=45.58  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...+++.|++|+|||+++..+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.15  E-value=0.003  Score=46.62  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .+++.|++|+||||++..+.+.-
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999987653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.15  E-value=0.0031  Score=46.33  Aligned_cols=24  Identities=17%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -.|++.|++|+|||+|+.++....
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc
Confidence            469999999999999999998753

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.11  E-value=0.0036  Score=42.72  Aligned_cols=19  Identities=32%  Similarity=0.510  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q psy14754          8 LVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~   26 (192)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5789999999999998864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.10  E-value=0.0039  Score=43.64  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-|++.|..||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.10  E-value=0.0047  Score=44.96  Aligned_cols=24  Identities=38%  Similarity=0.493  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +.-|+|+|++|||||||...+...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            345889999999999999998764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.09  E-value=0.0047  Score=45.53  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-|+|+|++|||||||...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.08  E-value=0.0041  Score=46.13  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..+|+++|++|+||||+...|.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999976654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.08  E-value=0.0035  Score=45.45  Aligned_cols=22  Identities=23%  Similarity=0.375  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+++.|++|+|||+++..+...
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            6999999999999999988764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.08  E-value=0.0035  Score=47.89  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +-.|++.||||+|||+|+.++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.08  E-value=0.0019  Score=41.41  Aligned_cols=24  Identities=13%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...|++.|++|+|||++...+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            457999999999999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.06  E-value=0.0025  Score=55.41  Aligned_cols=23  Identities=26%  Similarity=0.621  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      +|+++|++|||||||++.|.+-.
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCc
Confidence            78999999999999999998754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.04  E-value=0.0039  Score=45.72  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..+++.|++|+|||+++.++...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999998764

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.03  E-value=0.0045  Score=48.52  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+.-|+++|.+||||||+..+|..
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~   57 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTR   57 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.99  E-value=0.004  Score=45.94  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+++.|++|+||||+++.+.+.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.99  E-value=0.0017  Score=46.16  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..+++.|++|+|||+++.++...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998763

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.97  E-value=0.0045  Score=45.15  Aligned_cols=24  Identities=33%  Similarity=0.549  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-.+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999887753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.95  E-value=0.0048  Score=42.52  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=20.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ...-|++.|++||||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            345689999999999999998754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.95  E-value=0.0036  Score=46.69  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-.+++.|++|+|||++++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            447999999999999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.95  E-value=0.0037  Score=49.06  Aligned_cols=19  Identities=32%  Similarity=0.487  Sum_probs=0.0

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q psy14754          8 LVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~   26 (192)
                      ++|+|++|||||||++.++
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.0051  Score=46.45  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +-.|++.||||+|||+|+.++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            457999999999999999999764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.92  E-value=0.0027  Score=50.11  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ..|+++|++|||||||.+.|.+.-
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHhh
Confidence            468999999999999999987643

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.91  E-value=0.0039  Score=43.40  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=17.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..-|++.|++||||||+++.|..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999988764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.90  E-value=0.0044  Score=48.24  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -.++++|++|+|||+|++++.+..
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999988653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.89  E-value=0.0054  Score=51.45  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            579999999999999999986543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.88  E-value=0.0044  Score=46.12  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.+++.|++|+|||+++.++...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.87  E-value=0.0049  Score=45.89  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.|++.|++|+|||+|+.++...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35999999999999999998764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.87  E-value=0.0044  Score=46.89  Aligned_cols=20  Identities=20%  Similarity=0.217  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCchhHHHHHHh
Q psy14754          7 KLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~   26 (192)
                      -++|+|++|+|||||+..+.
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            37899999999999999875

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.86  E-value=0.0047  Score=47.37  Aligned_cols=23  Identities=35%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.+++.|++|+|||+|++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-51
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-51
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-47
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-46
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-45
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	5e-45
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-43
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-42
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	9e-42
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-40
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-40
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-38
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-38
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-37
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-36
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-36
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-36
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-36
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-35
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-34
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	8e-32
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	9e-32
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-31
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-31
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-30
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	7e-30
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-29
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-29
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-29
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	7e-29
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-28
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	8e-27
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-26
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-26
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-25
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-25
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-24
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-24
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-24
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-23
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-23
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-22
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-22
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-21
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	9e-21
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-19
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-19
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	7e-19
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-18
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-18
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-18
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-17
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-16
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	5e-13
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	8e-13
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-10
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	6e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-04
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	2e-04
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	2e-04
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	3e-04
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	4e-04
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	0.002
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	0.002
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	0.002
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	0.002
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	0.004

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  162 bits (409), Expect = 1e-51
 Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 1/187 (0%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ ++FP  YVPTVF+NY   + +  +   L L+DTAGQEDY
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP  P +LVG + DLR+DP+
Sbjct: 65  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ-VKKKK 185
           TI++L K KQ+P+ PE    +A+ + A  Y+ECSA +++G++ VF+ A  AAL+  + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184

Query: 186 KGRCRLL 192
             RC LL
Sbjct: 185 SRRCVLL 191

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (407), Expect = 2e-51
 Identities = 160/177 (90%), Positives = 166/177 (93%)

Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
           IRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDTAG 
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL 60

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
           EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 120

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           D +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  151 bits (382), Expect = 1e-47
 Identities = 91/178 (51%), Positives = 129/178 (72%), Gaps = 1/178 (0%)

Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
           ++ K+V+VGD  CGKT LL VF+KD FPE YVPTVFENY A  E+D++++EL+LWDT+G 
Sbjct: 1   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 60

Query: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
             YD +RPLSYPD+D +L+CF I  P++L+++ +KW  E++ FCPN  ++LVG K DLR 
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQ 180
           D +T+ EL+  +Q PV  ++G  MA++I A  Y+ECSA   E  VR++F  AT A + 
Sbjct: 121 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (374), Expect = 3e-46
 Identities = 94/173 (54%), Positives = 130/173 (75%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLL+ ++ D FPE YVPTVF++Y   + V  KQ  L L+DTAGQEDY
Sbjct: 11  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ +P S +N+ E+W PE+K + PNVP +L+G + DLR+DP 
Sbjct: 71  DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 130

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
           T+  LN MK++P+  E+G+ +A++I A  Y+ECSA +++G++ VF+ A  A L
Sbjct: 131 TLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 2e-45
 Identities = 104/174 (59%), Positives = 130/174 (74%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K V+VGDGA GKTCLLI ++ + FP  Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
           DRLRPLSYP TDV L+CFS+ SP S EN+  KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 67  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           TI++L + K  P+   +G AMA++I A  YLECSA ++ G++ VF+ A RA L 
Sbjct: 127 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  144 bits (365), Expect = 5e-45
 Identities = 47/179 (26%), Positives = 95/179 (53%), Gaps = 18/179 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++++GD   GK+CLL+ F +D+F   ++ T+  ++ +  ++++ K+V+L +WDTAGQE 
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y     I++ + I    +  NI + +    +H      ++LVGNK D+    
Sbjct: 64  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 123

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
            T              ++G A+A+++    ++E SAK+ + V E+F T  +    +++K
Sbjct: 124 VT-------------ADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAK---LIQEK 165

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  141 bits (356), Expect = 1e-43
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++GD   GKTC+L  FS+D F   ++ T+  ++ +  IE+D K+++L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y     I++ + I +  S +NI        +H   +V  +++GNK       
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC------ 121

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
                 +   +  V  E G  +A       ++E SAK+   V   F T  R    +K K 
Sbjct: 122 ------DVNDKRQVSKERGEKLALDYGI-KFMETSAKANINVENAFFTLAR---DIKAKM 171

Query: 186 K 186
            
Sbjct: 172 D 172

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 1e-42
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 14/178 (7%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
           K+V++G+   GKTCL+  F++  FP     T+  +  +  +E++ ++V+L +WDTAGQE 
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y   + +++ + I   +S   +PE      ++    V  +LVGNK DL    
Sbjct: 67  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 126

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
              ++  +   E                  YLE SAK  + V ++F       +   +
Sbjct: 127 EVSQQRAEEFSE-------------AQDMYYLETSAKESDNVEKLFLDLACRLISEAR 171

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  137 bits (345), Expect = 9e-42
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 25/197 (12%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           KL+++G+   GK+CLL+ FS D +   Y+ T+  ++ +  +E+D K V+L +WDTAGQE 
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y  +  I++ + +   +S   +        ++    V  +LVGNK DL++  
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ----- 180
               ++ K   +  K               +LE SA     V + F T  R   +     
Sbjct: 128 VVEYDVAKEFADANK-------------MPFLETSALDSTNVEDAFLTMARQIKESMSQQ 174

Query: 181 ------VKKKKKGRCRL 191
                  KK+ KG   L
Sbjct: 175 NLNETTQKKEDKGNVNL 191

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 3e-40
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVP-TVFENYVADIEVDSKQVELALWDTAGQED 65
           K+V++GD   GK+ LL  F++++F          E     I+VD K ++  +WDTAGQE 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           Y R+    Y      L+ + I    + EN+         H   N+ I+LVGNK D     
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD----- 120

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
                        V  +E RA A+K N  +++E SA     V E F+       ++  +K
Sbjct: 121 -------LRHLRAVPTDEARAFAEKNNL-SFIETSALDSTNVEEAFKNILTEIYRIVSQK 172

Query: 186 K 186
           +
Sbjct: 173 Q 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 6e-40
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 14/172 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQED 65
           K +I+GD   GK+CLL  F++ +F      T+  E     IEV  ++++L +WDTAGQE 
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y      LM + I    +  ++    T       PN  IIL+GNK DL    
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           +               EE +  A++     +LE SAK+ E V + F  A + 
Sbjct: 126 DVTY------------EEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKK 164

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 1e-38
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 16/182 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
           K +I+GD   GK+CLL+ F+  +F  V+  T+  E     + +D KQ++L +WDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y      L+ + I   ++  ++        +H   N+ I+L+GNK DL +  
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
           +  +            EEG A A++     ++E SAK+   V E F    +     +K +
Sbjct: 125 DVKR------------EEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIY--RKIQ 169

Query: 186 KG 187
           +G
Sbjct: 170 QG 171

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 4e-38
 Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 14/181 (7%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K +++G+   GK+CLL  F + +F +    T+   +    I V  K V+L +WDTAGQE 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  +    Y      L+ + I S ++   +    T        N+ IIL GNKKD     
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD----- 121

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
                   +  +        +   + N   +LE SA + E V E F    R  L   +  
Sbjct: 122 --------LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 173

Query: 186 K 186
           +
Sbjct: 174 E 174

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 6e-37
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+V++G G  GK+ L + F    F E Y PT+ + Y  +IEVDS    L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDP 125
             +R L   +    ++ +S+ +  S ++I       ++      VP+ILVGNK DL    
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL---- 120

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
                     +  V   EGRA+A++     ++E SAKSK  V E+F    R
Sbjct: 121 --------ESEREVSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVR 162

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  123 bits (309), Expect = 1e-36
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 14/175 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
           K++I+G+ + GKT  L  ++ D F   +V TV  ++ V  I  + K+++L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           Y  +    Y      ++ + I + +S   + +  T    +   N  ++LVGNK       
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC------ 120

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                 +   +  V  E GR +A  +  F + E SAK    V++ FE       +
Sbjct: 121 ------DMEDERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVICE 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 2e-36
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 18/179 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN--YVADIEVDSKQVELALWDTAGQE 64
           K+++VGD   GKTCLL+ F    F      +          ++VD  +V+L +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
            +  +    Y D   +L+ + + +  S +NI    T   ++   +V ++L+GNK      
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV----- 122

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                  +   +  VK E+G  +A++     ++E SAK+   V   F    +   ++K+
Sbjct: 123 -------DSAHERVVKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIAK---ELKR 170

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 3e-36
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 14/172 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DSKQVELALWDTAGQED 65
           KLV +G+ + GKT L+  F  D F   Y  T+  ++++     + + + L LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  L P    D+   ++ + I + +S +   +           +V I+LVGNK DL +  
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
                           EEG   A+++N   ++E SAK+   V+++F     A
Sbjct: 122 QVS------------IEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAA 160

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 6e-36
 Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 25/191 (13%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-----------VADIEVDSKQVEL 55
           KL+ +GD   GKT  L  ++ ++F   ++ TV  ++                  + +V L
Sbjct: 7   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66

Query: 56  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIIL 114
            LWDTAGQE +  L    + D    L+ F + S  S  N+    +    + +C N  I+L
Sbjct: 67  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126

Query: 115 VGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETA 174
           +GNK DL              Q  V   + R +A K     Y E SA + + V +  ET 
Sbjct: 127 IGNKADL------------PDQREVNERQARELADKYGI-PYFETSAATGQNVEKAVETL 173

Query: 175 TRAALQVKKKK 185
               ++  ++ 
Sbjct: 174 LDLIMKRMEQC 184

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 14/175 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
           K++I+G+   GK+ LL+ F+ D F      T+  +  V  I VD  + +LA+WDTAGQE 
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  L P  Y     +++ + +   D+   +         +   N  + ++   K      
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK------ 122

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                    +   V   EG   A+K +   ++E SAK+ +GV+  FE      +Q
Sbjct: 123 ------IDKENREVDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKIIQ 170

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 3e-34
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 18/179 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQED 65
           K++++GDG  GK+ L+  +  ++F      T+   ++     VD   V + +WDTAGQE 
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDL 121
           +  LR   Y  +D  L+ FS+D   S +N+       + +       + P +++GNK D+
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                +              EE +A  +    + Y E SAK    V   FE A R  L 
Sbjct: 128 SERQVS-------------TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 8e-32
 Identities = 43/175 (24%), Positives = 90/175 (51%), Gaps = 14/175 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
           K+V++G+G  GKT L++ + +++F + ++ T+  +++   + +  K+V LA+WDTAGQE 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  L P+ Y D++  ++ + I   DS + +        K     + + +VGNK DL  + 
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           +   +  +            + A+ + A  +   SAK  +G+ E+F    +  ++
Sbjct: 125 HVSIQEAE------------SYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 9e-32
 Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 16/178 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV++G G  GK+ L + F +  F E Y PT+ ++Y   +EVD +Q  L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDP 125
             +R L   +     + +SI +  +  ++ +     ++     +VP+ILVGNK D     
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD----- 119

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                     +  V  E+G+ +A++    A+LE SAKSK  V E+F    R   Q+ +
Sbjct: 120 -------LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR---QINR 167

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-31
 Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG G  GK+ L I   ++ F + Y PT+ ++Y   + +D +   L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDP 125
             +R       +  L  F+I++  S E+I +      +     +VP++LVGNK DL    
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
              ++   + +                   Y+E SAK+++GV + F T  R   Q
Sbjct: 125 VESRQAQDLARS--------------YGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 5e-31
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQED 65
           KLV++G+ A GK+ L++ F K QF E    T+        + +D   V+  +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           Y  L P+ Y      ++ + I + +S            +   PN+ I L GNK D     
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD----- 122

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                   +  +     +        N+  ++E SAK+   V E+F    +   +
Sbjct: 123 --------LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (267), Expect = 2e-30
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 17/183 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE--VDSKQVELALWDTAGQE 64
           K++I+GD   GKT L+  +  D++ + Y  T+  +++         K   + +WDTAGQE
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN----VPIILVGNKKD 120
            +  L    Y   D  ++ + + +  S ENI       + H   N     P +++GNK D
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                  + E +  +           +A+ +        SAK+   V   FE   R+ALQ
Sbjct: 124 AEESKKIVSEKSAQE-----------LAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

Query: 181 VKK 183
             +
Sbjct: 173 QNQ 175

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 7e-30
 Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 15/177 (8%)

Query: 3   AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELA-LWDT 60
           A+R+ K+ ++GD   GK+ ++  F +D F     PT+  +++        ++    +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
           AG E +  L P+ Y  +   ++ + I   ++   +        +H  P++ + + GNK D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
           L +    +              + +  A  I+A  ++E SAK+   + E+F   +R 
Sbjct: 121 LTDVREVM------------ERDAKDYADSIHAI-FVETSAKNAININELFIEISRR 164

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 1e-29
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 14/179 (7%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VG G  GK+ L I F +  F   Y PT+ ++Y     VD     L + DTAGQE++
Sbjct: 8   KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 67

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDP 125
             +R          L+ F+I+   S   + + +T  ++     + P++LVGNK DL +  
Sbjct: 68  GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ- 126

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                          P    +     +  AY E SAK +  V E FE   RA  + +++
Sbjct: 127 ------------RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (261), Expect = 2e-29
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 14/179 (7%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDS-KQVELALWDTAGQED 65
           KLV++G+ A GK+ +++ F  + F E   PT+   ++      +   V+  +WDTAGQE 
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
           +  L P+ Y +    L+ + +  P S            +    ++ I LVGNK D+  + 
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE- 123

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                     +  V  EEG  +A++     + E SAK+ E V +VF        ++  K
Sbjct: 124 --------GGERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIGE---KIPLK 170

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  104 bits (260), Expect = 2e-29
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 19/180 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+++VG G  GK+ L + F  D+F E Y PT  ++Y   + +D ++V++ + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
             +R   +   +  L  FSI   +S       +  ++       NVP +LVGNK DL   
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDL--- 121

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                      +  V  EE +  A + N   Y+E SAK++  V +VF    R   +++ +
Sbjct: 122 ---------EDKRQVSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMR---EIRAR 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (258), Expect = 7e-29
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQED 65
           K++I+GD   GKT L+  +   +F   Y  T+       ++ VD + V + +WDTAGQE 
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDL 121
           +  L    Y   D  ++ F + +P++ + +       +    P    N P +++GNK DL
Sbjct: 64  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123

Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
            N                  +  +A     N   Y E SAK    V + F+T  R AL+ 
Sbjct: 124 ENRQVA-------------TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170

Query: 182 KKKKK 186
           + + +
Sbjct: 171 ETEVE 175

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-28
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 18/181 (9%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           ++ + G G  GK+ L++ F K  F E Y+PTV + Y   I  D     L + DT G   +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT--PEVKHFCPNVPIILVGNKKDLRND 124
             ++ LS       ++ +SI S  SLE +   +    E+K    ++PI+LVGNK      
Sbjct: 64  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK------ 117

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
                  ++     V+  E  A+A+     A++E SAK    V+E+F+         K++
Sbjct: 118 ------CDESPSREVQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLN---LEKRR 167

Query: 185 K 185
            
Sbjct: 168 T 168

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (243), Expect = 8e-27
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 14/178 (7%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +LV+VG G  GK+ L I F +  F   Y PT+ ++Y     +D +   L + DTAGQE++
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDP 125
             +R       +  L+ FS+    S E I +     ++       P+IL+GNK DL +  
Sbjct: 67  GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR 126

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
                           EEG+ +A+++    Y+E SAK +  V + F    R   + ++
Sbjct: 127 QVT------------QEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVRVIRKFQE 171

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.8 bits (242), Expect = 1e-26
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 15/176 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV+VGDG  GK+ L I F +  F   Y PT+ ++Y+   E+D++   L + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDP 125
             +R       D  L+ +S+    S E++       ++     + P+ILV NK DL +  
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-- 123

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQ 180
                        V  ++G+ MA K N   Y+E SAK     V + F    R   Q
Sbjct: 124 ----------LRKVTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 96.3 bits (238), Expect = 3e-26
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 13/167 (7%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           ++++VG  A GKT +L      +         F        V+ K +   +WD  GQ+  
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 57

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
             L    + +T  ++     +  + +    E+    +        ++LV   K    +  
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
              E        +  + G    +  N +      A S +G+ E  + 
Sbjct: 118 NAAE--------ITDKLGLHSLRHRNWY-IQATCATSGDGLYEGLDW 155

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.3 bits (233), Expect = 2e-25
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 19/173 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
           K++++GD   GKTCL   F   +FP+    T+  +     +++D +++++ LWDTAGQE 
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 66  YDRL-RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRN 123
           + +      Y +   ++  + + +  S  ++P       +H    ++P ILVGNK DL  
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL-- 121

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK---EGVREVFET 173
                          V  +  +  A   +     E SAK+    + V  +F T
Sbjct: 122 ----------RSAIQVPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMT 163

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.8 bits (229), Expect = 8e-25
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 15/178 (8%)

Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAG 62
           +  K+V+VG+GA GK+ ++  + K  F + Y  T+  +++   I+V+ + V L LWDTAG
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE++D +    Y      ++ FS    +S E I   W  +V     ++P  LV NK D  
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKID-- 117

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
                      +    +K EE   +A+++    +   S K    V EVF+      LQ
Sbjct: 118 ----------LLDDSCIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 2e-24
 Identities = 31/183 (16%), Positives = 66/183 (36%), Gaps = 19/183 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +L ++GD   GK+ L+  F    +      T  E Y  ++ VD +   + + + AG  D 
Sbjct: 7   RLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 65

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRN 123
                      D ++  FS++  +S + +                 + + LVG +  +  
Sbjct: 66  KF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 120

Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
               +                RA+   +   +Y E  A     V  VF+   +  + ++K
Sbjct: 121 SSPRVVG----------DARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 170

Query: 184 KKK 186
           +++
Sbjct: 171 QQQ 173

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 2e-24
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 17/178 (9%)

Query: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAG 62
           ++ KLV+VGDG  GKT  +      +F + YV T+           +   ++  +WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
           QE +  LR   Y      ++ F + S  +       W  ++   C N+PI+L GNK D++
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVT-YKNVPNWHRDLVRVCENIPIVLCGNKVDIK 120

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
           +     K +   +++ ++               Y + SAKS     + F    R  + 
Sbjct: 121 DRKVKAKSIVFHRKKNLQ---------------YYDISAKSNYNFEKPFLWLARKLIG 163

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 3e-24
 Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 19/181 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KL I G    GK+ L++ F   +F   Y PT+   Y     +D + V + + DTAGQED 
Sbjct: 4   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT 63

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDP 125
            + R       +  ++ + I    S E +        +     NV +ILVGNK DL +  
Sbjct: 64  IQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-- 120

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEG-VREVFETATRAALQVKKK 184
                        V  EEG  +A ++   A+ ECSA + EG + E+F    R   +V+++
Sbjct: 121 ----------SRQVSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELCR---EVRRR 166

Query: 185 K 185
           +
Sbjct: 167 R 167

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 90.5 bits (223), Expect = 1e-23
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 7/169 (4%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KLV +G    GKT LL +   D+  +        +     E+    +    +D  G    
Sbjct: 15  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELTIAGMTFTTFDLGGHIQA 70

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDP 125
            R+     P  + I+        + L    E+    +      NVPI+++GNK D     
Sbjct: 71  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 130

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINA--FAYLECSAKSKEGVREVFE 172
           +  +             +G    +++NA       CS   ++G  E F 
Sbjct: 131 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.0 bits (219), Expect = 2e-23
 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 14/174 (8%)

Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           +K+ I+G  + GK+ L I F + QF + Y PT+   +   I V+ ++  L L DTAGQ++
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRND 124
           Y         D +  ++ +S+ S  S E I       +       +PI+LVGNKKDL   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL--- 121

Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
                      +  +  EEG+A+A+  NA A+LE SAK  +   +VF      A
Sbjct: 122 ---------HMERVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEA 165

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 1e-22
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 15/167 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +++++G  A GKT +L      Q         F           K V+  +WD  GQ+  
Sbjct: 14  RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKI 69

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDP 125
             L    Y  T  ++        D ++   ++    +      +  I++  NK+DL +  
Sbjct: 70  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA- 128

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                   MK   ++ + G    +  N +      A S +G+ E   
Sbjct: 129 --------MKPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGLT 166

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.9 bits (211), Expect = 4e-22
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 8/167 (4%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KL+ +G    GKT LL +   D+      PT         E+    ++   +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE---ELAIGNIKFTTFDLGGHIQA 57

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLEN-IPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
            RL    +P+ + I+       P+  +    E           +VP +++GNK D  N  
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
           +  +  + +        +     +         CS   + G  E F+
Sbjct: 118 SEAELRSALGLLNTTGSQ---RIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 85.0 bits (209), Expect = 1e-21
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 18/180 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +++I+G    GKT +L      +      PT+  N      +  K ++L +WD  GQ   
Sbjct: 19  RILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVE---TLSYKNLKLNVWDLGGQTSI 74

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDP 125
                  Y DT  ++        D +    ++    ++     +  +++  NK+D     
Sbjct: 75  RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 134

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
           +  +   ++    +K             ++ +  SA   EG+ E  +        +K+++
Sbjct: 135 SASEVSKELNLVELKDRS----------WSIVASSAIKGEGITEGLDWLID---VIKEEQ 181

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 9e-21
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 15/167 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K++IVG    GKT +L  FS ++                 E+        +WD  GQE  
Sbjct: 17  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 72

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDP 125
                  Y +T+ +++       + +    E+    + H       +++  NK+D++   
Sbjct: 73  RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK--- 129

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
                   M    +         +         C A + EG+ +  E
Sbjct: 130 ------ECMTVAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLE 169

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 79.2 bits (194), Expect = 2e-19
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 15/168 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +++++G    GKT LL   + +    +     F        V S+  +L +WD  GQ   
Sbjct: 18  RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKI 73

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDP 125
                  + +TD+++           E   ++ T  ++      VP+++  NK+DL    
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL---- 129

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                L       +         +         CSA + EGV++    
Sbjct: 130 -----LTAAPASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGMNW 171

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (192), Expect = 3e-19
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 20/183 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFS--KDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           ++V++G+   GK+ L  +F+   D           + Y   + VD +   + L D    +
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 65  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE--VKHFCPNVPIILVGNKKDLR 122
             +              +     +  +      +   +        ++PIILVGNK    
Sbjct: 65  GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS--- 121

Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
                    + ++   V   EGRA A   +   ++E SA  +  V+E+FE   R   QV+
Sbjct: 122 ---------DLVRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVR---QVR 168

Query: 183 KKK 185
            ++
Sbjct: 169 LRR 171

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 77.4 bits (189), Expect = 7e-19
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 14/168 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +L +VG    GKT  + V +  QF E  +PT         ++    V + LWD  GQ  +
Sbjct: 4   ELTLVGLQYSGKTTFVNVIASGQFNEDMIPT---VGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDP 125
             +          I+        + +E    +    +       +P++++GNK+DL    
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP--- 117

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
                   + ++ +  +   +  Q          S K K+ +    + 
Sbjct: 118 ------GALDEKELIEKMNLSAIQDREI-CCYSISCKEKDNIDITLQW 158

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (187), Expect = 1e-18
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K++++G    GK+ L  +F   +            Y   I VD ++  L ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRNDP 125
             L        D  ++ +S+    S E   E      +    + VPIILVGNK       
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS------ 115

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
                 + ++   V  +EGRA A   +   ++E SA     V+ +FE   R     +  K
Sbjct: 116 ------DLVRSREVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.9 bits (188), Expect = 2e-18
 Identities = 30/198 (15%), Positives = 56/198 (28%), Gaps = 32/198 (16%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KL+++G G  GK+ ++            +               K +   ++D  GQ   
Sbjct: 4   KLLLLGAGESGKSTIVKQMKIIHEAGTGIVE--------THFTFKDLHFKMFDVGGQRSE 55

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDS----------LENIPEKWTPEVKHFC-PNVPIILV 115
            +     +     I+ C ++   D           +    + +     +    +  IIL 
Sbjct: 56  RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 115

Query: 116 GNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA-------------FAYLECSAK 162
            NKKDL  +      L     E          A  I                      A 
Sbjct: 116 LNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCAT 175

Query: 163 SKEGVREVFETATRAALQ 180
             + V+ VF+  T   ++
Sbjct: 176 DTKNVQFVFDAVTDVIIK 193

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 4e-18
 Identities = 25/179 (13%), Positives = 61/179 (34%), Gaps = 18/179 (10%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +L+++G    GKT +L  F+ +       PT+  N         +  +L +WD  GQ+  
Sbjct: 4   RLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEH---RGFKLNIWDVGGQKSL 59

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDP 125
                  +  TD ++          +++   +    +         +++  NK+DL    
Sbjct: 60  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 119

Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
           +       ++ + ++             +    CSA + E +    +        +  +
Sbjct: 120 SCNAIQEALELDSIRSHH----------WRIQGCSAVTGEDLLPGIDWLLD---DISSR 165

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 16/179 (8%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +++I+G    GKT +L      +         F           K ++  +WD  G    
Sbjct: 7   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTY----KNLKFQVWDLGGLTSI 62

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
                  Y +TD ++        D +     +    ++       I++V   K       
Sbjct: 63  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
           T  E+            G    +        + SA    G+ E  E        +K ++
Sbjct: 123 TSSEMAN--------SLGLPALKDRKW-QIFKTSATKGTGLDEAMEWLVE---TLKSRQ 169

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.7 bits (177), Expect = 1e-16
 Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 29/198 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KL+++G G  GK+  +            VPT           D + V   + D  GQ   
Sbjct: 4   KLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIE---YPFDLQSVIFRMVDVGGQRSE 58

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIP----------EKWTPEVKH-FCPNVPIILV 115
            R     + +   I+   ++   D +                +   + + +  N  +IL 
Sbjct: 59  RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 118

Query: 116 GNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI-------------NAFAYLECSAK 162
            NKKDL  +      L     E   P+     A++                       A 
Sbjct: 119 LNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCAT 178

Query: 163 SKEGVREVFETATRAALQ 180
             E +R VF       LQ
Sbjct: 179 DTENIRFVFAAVKDTILQ 196

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.6 bits (151), Expect = 5e-13
 Identities = 35/199 (17%), Positives = 57/199 (28%), Gaps = 31/199 (15%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K++++G G  GK+  L      +      PT   +     + + K V   + D  GQ   
Sbjct: 4   KILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQRSE 57

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----------PNVPIILV 115
            +     +     IL   S    D +     +     +               NV IIL 
Sbjct: 58  RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILF 117

Query: 116 GNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL--------------ECSA 161
            NK DL  +   +  +     E           QK     +                 +A
Sbjct: 118 LNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTA 177

Query: 162 KSKEGVREVFETATRAALQ 180
            + E +R VF       L 
Sbjct: 178 INTENIRLVFRDVKDTILH 196

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 8e-13
 Identities = 24/173 (13%), Positives = 59/173 (34%), Gaps = 8/173 (4%)

Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           + ++ VG    GKT L +     Q+ +    ++ ++       +++   L L D  G E 
Sbjct: 1   RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHES 59

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE------KWTPEVKHFCPNVPIILVGNKK 119
                   +       + F +DS      + +      +   +      +  +++  NK+
Sbjct: 60  LRFQLLDRFKS-SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 118

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
           D+    +      ++++E       R+ A      +    +   K+G    F 
Sbjct: 119 DIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFS 171

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 29/194 (14%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           +L+++G G  GK+ ++            V T     + + +    +V   ++D  GQ D 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTS---GIFETKFQVDKVNFHMFDVGGQRDE 60

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDS-----------LENIPEKWTPEVKHFCPNVPIILV 115
            R     + D   I+   +  S +             E +    +     +   + +IL 
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 116 GNKKDL-----RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREV 170
            NK+DL         + I++          PE+      +           ++K  +R+ 
Sbjct: 121 LNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRV------TRAKYFIRDE 174

Query: 171 FETATRAALQVKKK 184
           F   + A+   +  
Sbjct: 175 FLRISTASGDGRHY 188

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 15/173 (8%)

Query: 8   LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67
           ++I G    GKT LL + + D      V +         + D   V L  +    +  Y 
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYK 62

Query: 68  RLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFC-----PNVPIILVGNKKD 120
               L      V  + F +DS    + +    ++  ++           + I++  NK +
Sbjct: 63  LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 122

Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           L       K  + ++ E  K  E R       +   +E     ++      + 
Sbjct: 123 LFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEEDYAENTLDV 170

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 26/171 (15%), Positives = 52/171 (30%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           K+ IVG    GK+ L       +   V           D EV     +    DTAG    
Sbjct: 10  KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 69

Query: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
            R+ P +        +  SI+  D +  + +      +       ++    +  +     
Sbjct: 70  SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNK 129

Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
               +++ K+     +  R     I+    +  SA     +  + +    A
Sbjct: 130 WDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 180

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 19/125 (15%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
           R K+ I+G G  G +    +  +    E+ +  VF+              + +       
Sbjct: 1   RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKA-------IGEAMDINHGLPFM 53

Query: 65  DYDRLRPLSYPDTDVILMCFS------------IDSPDSLENIPEKWTPEVKHFCPNVPI 112
               L    Y D     +               +D       I ++ T  +  +  +  I
Sbjct: 54  GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 113

Query: 113 ILVGN 117
           ++V N
Sbjct: 114 LVVSN 118

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 27/174 (15%)

Query: 7   KLVIVGDGACGKTCLLIVFSK-------DQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
           K+VI G    GK+ LL   +        D             ++  + +           
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62

Query: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
           +   E     R     +    ++     +     +  E W   +      +PI +V NK 
Sbjct: 63  SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122

Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
           D+  +   + E+N                        +  SA++ EGV  +   
Sbjct: 123 DITGETLGMSEVNGHA--------------------LIRLSARTGEGVDVLRNH 156

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 19/125 (15%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
            +K+V+VGDGA G +    +  +    E  +  V ++         K   L L D     
Sbjct: 5   HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT-------KGDALDLEDAQAFT 57

Query: 65  DYDRLRPLSYPDT---DVILMCFSIDSPDSLEN---------IPEKWTPEVKHFCPNVPI 112
              ++    Y D    D++++                     I       V     +   
Sbjct: 58  APKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIF 117

Query: 113 ILVGN 117
           ++  N
Sbjct: 118 LVAAN 122

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
           A + K+V+VG G  G     ++  K+   +V +  + +N      +D+    +  +    
Sbjct: 1   APKAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN------------IPEKWTPEVKHFCPNV 110
               +    L+  D  ++   F+     S +             I  +    +K  CPN 
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 111 PIILVGNKKDL 121
            II+V N  D+
Sbjct: 120 FIIVVTNPVDV 130

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 18/125 (14%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN---YVADIEVDSKQVELALWDTA 61
           RKK+ I+G G  G T    + +K+    V +  V         D+  ++  +E       
Sbjct: 1   RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLY-EASPIEGFDVRVT 59

Query: 62  GQEDYDRLRPLSYPDTDVILMCFSI---------DSPDSLENIPEKWTPEVKHFCPNVPI 112
           G  +Y         ++DVI++             D      +I      +     PN  I
Sbjct: 60  GTNNYADTA-----NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVI 114

Query: 113 ILVGN 117
           I+V N
Sbjct: 115 IMVNN 119

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 16/129 (12%)

Query: 6   KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
           +K+ I+G G  G      + ++    +       E      +    Q  +A  +  G   
Sbjct: 2   RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA-KVKADQIDFQDAMANLEAHGNIV 60

Query: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-------------TPEVKHFCPNVPI 112
            +    L+    DV++               +++                +K    +  +
Sbjct: 61  INDWAALADA--DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVL 118

Query: 113 ILVGNKKDL 121
           +++ N  D+
Sbjct: 119 VVISNPVDV 127

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 6/123 (4%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA--G 62
           R K+ +VG G  G  C + +  K    E+ +     + +    +D +   L L       
Sbjct: 19  RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVF 78

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK----WTPEVKHFCPNVPIILVGNK 118
            +DY+                 S  +   L            P V    P+  II+V N 
Sbjct: 79  GKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 119 KDL 121
            D+
Sbjct: 139 VDI 141

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 7/122 (5%)

Query: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
           KL  VG G  G T            E+ +  + E+      +D       +         
Sbjct: 2   KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG 61

Query: 67  DRLRPLSYPDTDVILMCFS-------IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
                L   +  V+    +       +D       I +    ++    P   I++V N  
Sbjct: 62  ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121

Query: 120 DL 121
           D+
Sbjct: 122 DV 123

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 16/124 (12%)

Query: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA--G 62
             ++V++G G  G + +  + ++    E+ +    E+      +D    ++         
Sbjct: 6   GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE---------KWTPEVKHFCPNVPII 113
             DYD  R       D++++C   +       +                V         +
Sbjct: 66  HGDYDDCRD-----ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL 120

Query: 114 LVGN 117
           +  N
Sbjct: 121 VATN 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.96
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.95
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.92
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.89
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.89
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.89
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.88
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.88
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.86
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.85
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.83
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.81
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.8
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.78
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.77
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.77
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.75
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.7
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.64
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.55
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.46
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.45
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.27
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.26
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.18
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.17
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.05
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.91
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.56
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.56
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.42
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.42
d1okkd2	207	GTPase domain of the signal recognition particle r	98.39
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.38
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.34
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.28
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.28
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.24
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.24
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.14
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.0
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.99
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.9
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.89
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.86
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.86
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.81
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.79
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.79
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.78
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.77
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.75
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.72
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.7
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.69
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.67
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.63
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.6
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.58
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.57
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.56
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.53
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.52
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.49
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.49
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.48
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.48
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.46
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.46
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.45
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.42
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.42
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.42
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.42
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.4
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.39
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.39
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.39
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.38
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.37
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.37
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.36
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.35
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.33
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.32
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.32
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.3
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.29
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.28
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.28
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.27
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.26
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.25
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.25
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.25
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.24
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.23
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.22
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.21
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.17
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.14
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.13
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.11
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.11
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.1
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.05
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.01
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.98
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.97
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.96
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.95
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.92
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.89
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.87
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.86
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.81
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.8
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.78
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.74
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.68
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.68
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.68
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.67
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.66
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.65
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.64
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.59
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.58
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.5
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.46
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.46
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.44
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.44
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.39
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.38
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.34
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.31
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.29
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.23
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.2
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.15
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.13
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.11
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.07
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.06
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.02
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.99
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.96
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.96
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.95
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.93
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.86
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.82
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.73
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.63
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.61
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.6
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.6
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.53
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.47
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.45
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.45
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.35
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.34
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.33
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.28
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.25
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.21
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.18
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.16
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.13
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.07
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.84
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.66
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.54
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.38
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.27
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.16
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.78
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.6
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.23
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.2
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	92.76
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.11
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.93
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.32
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.02
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.84
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.35
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.15
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.71
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.64
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.62
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.58
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.55
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.54
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.53
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.03
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.97
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	88.82
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.66
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.65
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.82
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	87.75
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.55
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	87.14
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	86.68
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.46
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	86.19
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	85.8
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	85.13
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	84.54
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	84.53
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	84.05
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	83.82
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	83.76
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	83.34
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.08
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.92
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	80.42
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	80.2

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-41  Score=229.51  Aligned_cols=189  Identities=53%  Similarity=0.978  Sum_probs=170.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ..+||+++|++|+|||||+++|..+.+...+.++.+.........++..+.+.+||++|+++|...+..+++.+|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            36899999999999999999999999999888888877777778888999999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||++++++|+.+.+.|...+....++.|+++|+||+|+...............+.+..+++..+++.++..+|+++||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            99999999999988888888888889999999999999887776666666667889999999999998878999999999


Q ss_pred             cCCHHHHHHHHHHHHhhhccc-cccccccC
Q psy14754        164 KEGVREVFETATRAALQVKKK-KKGRCRLL  192 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~~~~~-~~~~c~~~  192 (192)
                      |.||+++|+.+.+.+.+.... ++.+|.||
T Consensus       162 ~~~V~e~f~~l~~~~~~~~~~k~~~~C~i~  191 (191)
T d2ngra_         162 QKGLKNVFDEAILAALEPPEPKKSRRCVLL  191 (191)
T ss_dssp             CTTHHHHHHHHHHHHTSCCSTTCCCSCCCC
T ss_pred             CcCHHHHHHHHHHHHhcCcCCCCCCCCeEC
Confidence            999999999999988877554 55578775

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-40  Score=223.29  Aligned_cols=176  Identities=90%  Similarity=1.403  Sum_probs=161.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +.||+|+|++|+|||||++++.++.+.+.+.++...........++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            68999999999999999999999999998888888777777788999999999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++++++.....|...+....++.|++||+||+|+...............+.++.+++..+++.++..+|++|||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~  161 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK  161 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            99999999999888889888888899999999999998877666666666778899999999999999889999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy14754        165 EGVREVFETATRAALQ  180 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~  180 (192)
                      .||+++|+.+.+.+++
T Consensus       162 ~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         162 DGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhC
Confidence            9999999999998763

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-40  Score=223.48  Aligned_cols=178  Identities=53%  Similarity=0.985  Sum_probs=162.2

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..-+||+++|.+|+|||||+++|..+.+...+.++........+...+..+.+.+||++|++.+...+..+++.+|++++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il   86 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   86 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence            45789999999999999999999999999888888877777777778888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++++++.....|...++...++.|+++|+||+|+..+............+.++.+++.++++.++.++|++|||+
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk  166 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  166 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCC
Confidence            99999999999987889998888888999999999999988777766666777788999999999999987899999999


Q ss_pred             CcCCHHHHHHHHHHHHhh
Q psy14754        163 SKEGVREVFETATRAALQ  180 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~  180 (192)
                      +|.||+++|+.++++++.
T Consensus       167 ~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         167 TQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHcC
Confidence            999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-39  Score=217.68  Aligned_cols=180  Identities=58%  Similarity=1.003  Sum_probs=164.1

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      .++++||+|+|++|+|||||+++|+++.+...+.++........+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            46789999999999999999999999999998888888777777888999999999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|||++++++++.+...|...++....+.|++||+||+|+..+............+.....++..+++.++.++|++|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            99999999999999878888888888899999999999998877666666666677888899999999998889999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++|.||+++|+.+++.++.+
T Consensus       162 k~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCcCHHHHHHHHHHHHcCC
Confidence            99999999999999988754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-38  Score=214.82  Aligned_cols=177  Identities=51%  Similarity=0.978  Sum_probs=161.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+++|++|+|||||++++..+.+++.+.++...........++..+.+.+||++|++.+...+...++.+|++++|
T Consensus         1 ~~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           1 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            36899999999999999999999999999888888777777778888999999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||++++++|+.+.+.|...+....++.|+++|+||+|+..+............+.++.+++..++++++..+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999999988888888888889999999999999887776666666677889999999999999878999999999


Q ss_pred             cC-CHHHHHHHHHHHHhh
Q psy14754        164 KE-GVREVFETATRAALQ  180 (192)
Q Consensus       164 ~~-gi~~~~~~i~~~~~~  180 (192)
                      |. |++++|+.+.+.++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999998875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=208.56  Aligned_cols=168  Identities=33%  Similarity=0.502  Sum_probs=147.9

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +...+||+++|++|+|||||+++|.++.+...+.++........+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            44679999999999999999999999999988888877777777888999999999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      +|||++++.++..+. .|...+.+.  .++.|+++|+||+|+..            .+....+++..+++.++ ++|++|
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilvgnK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~  148 (173)
T d2fn4a1          83 LVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLES------------QRQVPRSEASAFGASHH-VAYFEA  148 (173)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGG------------GCCSCHHHHHHHHHHTT-CEEEEC
T ss_pred             eecccccccccchhh-hhhHHHHHHhccCCCceEEEEEeechhh------------ccccchhhhhHHHHhcC-CEEEEE
Confidence            999999999999985 666655432  35889999999999876            35677888999999988 599999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        160 SAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ||++|.||+++|+.+.+.+.+.++
T Consensus       149 Sak~g~gv~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         149 SAKLRLNVDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             eCCCCcCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999866543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-37  Score=207.02  Aligned_cols=161  Identities=32%  Similarity=0.530  Sum_probs=145.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .+||+++|++|+|||||+++|.++.+...+.++.+. .........+..+.+.+||++|+..+...+..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            589999999999999999999999998887777764 3456667788899999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||++++++++.+ ..|++.+.+..++.|+++|+||+|+..            .+.+..+++..+++.++. +|+++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sak~  147 (164)
T d1z2aa1          82 FSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLD------------DSCIKNEEAEGLAKRLKL-RFYRTSVKE  147 (164)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGG------------GCSSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             Eeccchhhhhhc-ccccccccccCCCceEEEeeccCCccc------------ceeeeehhhHHHHHHcCC-EEEEeccCC
Confidence            999999999998 489988888888999999999999876            366788889999999985 999999999


Q ss_pred             cCCHHHHHHHHHHHHh
Q psy14754        164 KEGVREVFETATRAAL  179 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~  179 (192)
                      |.||+++|+.|.+.+.
T Consensus       148 g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         148 DLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             TBSSHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-37  Score=207.39  Aligned_cols=164  Identities=26%  Similarity=0.358  Sum_probs=129.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|+|||||++++.+..+... .++....+...+.+++..+.+.+||+||++.+...+..+++.+|++|+|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            6999999999999999999998776443 445555556677889999999999999999999999999999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ++++++++.+. .|...+....  ...|+++|+||+|+..            .+.++..+++++++.++ ++|+++||++
T Consensus        81 ~t~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sak~  146 (168)
T d2gjsa1          81 VTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVR------------SREVSVDEGRACAVVFD-CKFIETSAAL  146 (168)
T ss_dssp             TTCHHHHHHHH-HHHHHHHHHCC--CCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-SEEEECBTTT
T ss_pred             ccccccccccc-cccchhhcccccccceEEEeecccchhh------------hcchhHHHHHHHHHhcC-CEEEEEeCCC
Confidence            99999999995 6777766543  4689999999999976            35678889999999998 4999999999


Q ss_pred             cCCHHHHHHHHHHHHhhhccc
Q psy14754        164 KEGVREVFETATRAALQVKKK  184 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~~~~~  184 (192)
                      |.|++++|..|.+.+..++.+
T Consensus       147 ~~~v~~~f~~l~~~i~~~~~~  167 (168)
T d2gjsa1         147 HHNVQALFEGVVRQIRLRRDS  167 (168)
T ss_dssp             TBSHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHhhC
Confidence            999999999999988776544

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=206.53  Aligned_cols=166  Identities=27%  Similarity=0.492  Sum_probs=142.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+++|++|+|||||+++|.++.+...+.++.+... ...+.+.+..+.+.+|||||++.+...+..++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            458999999999999999999999998887776665444 5667788999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+|++++.++....+.|....+......|+++|+||+|+..            .+.+..+++..+++.++ ++++++||+
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~------------~~~v~~~~~~~~~~~~~-~~~~~~SAk  150 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE------------RREVSQQRAEEFSEAQD-MYYLETSAK  150 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG------------GCSSCHHHHHHHHHHHT-CCEEECCTT
T ss_pred             eeecccchhhhhhhhhhhhhcccccccccEEEEEeeccccc------------ccchhhhHHHHHHHhCC-CEEEEEccC
Confidence            99999999999997544444444446799999999999865            35677888899999988 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +|.||+++|.+|.+.++...
T Consensus       151 tg~gV~e~f~~l~~~l~~~~  170 (171)
T d2ew1a1         151 ESDNVEKLFLDLACRLISEA  170 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhc
Confidence            99999999999998887654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.9e-37  Score=205.37  Aligned_cols=165  Identities=29%  Similarity=0.501  Sum_probs=141.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+++|++|+|||||+++|.++.+...+.++.+ +.....+......+.+.+|||||++.+...+..+++.+|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            358999999999999999999999998887777665 4445677778889999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||+++++++......|........+..|+++++||.|+..            .+.+..+++..+++.++ ++++++||+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sak  150 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED------------ERVVSSERGRQLADHLG-FEFFEASAK  150 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEECBTT
T ss_pred             EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc------------ccccchhhhHHHHHHcC-CEEEEecCC
Confidence            99999999999986444443334446799999999999876            45677888899999988 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhhh
Q psy14754        163 SKEGVREVFETATRAALQV  181 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~  181 (192)
                      +|.|++++|++|.+.+.++
T Consensus       151 ~g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         151 DNINVKQTFERLVDVICEK  169 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhhC
Confidence            9999999999999988653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-37  Score=205.64  Aligned_cols=164  Identities=34%  Similarity=0.537  Sum_probs=145.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ++++||+++|++|+|||||++++..+.+...+.++.+..+...+..+...+.+.+||++|++.+...+..+++.+|++|+
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            46899999999999999999999999999988888887777777888999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh-h-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH-F-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~-~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++++++++.+. .|...+.+ . .++.|+++|+||+|+..            ......+++..+++++..++|+++|
T Consensus        81 v~d~~~~~sf~~~~-~~~~~~~~~~~~~~~p~ilvgnK~Dl~~------------~~~~~~~~~~~~~~~~~~~~~~e~S  147 (167)
T d1c1ya_          81 VYSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLED------------ERVVGKEQGQNLARQWCNCAFLESS  147 (167)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTTSCEEEECB
T ss_pred             eeeccchhhhHhHH-HHHHHHHHhcCCCCCeEEEEEEecCccc------------ccccchhHHHHHHHHhCCCEEEEEc
Confidence            99999999999996 55555443 2 46899999999999976            3567778888999887768999999


Q ss_pred             cCCcCCHHHHHHHHHHHHh
Q psy14754        161 AKSKEGVREVFETATRAAL  179 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~  179 (192)
                      |++|.|++++|.+|.+.+.
T Consensus       148 ak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         148 AKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TTTTBSHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHhc
Confidence            9999999999999998775

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=203.31  Aligned_cols=163  Identities=33%  Similarity=0.483  Sum_probs=145.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +..+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||++|.+.+...+...++.+|++|+
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            46789999999999999999999999998888888887777778889999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||++++++++.+. .|...+.+.  .++.|+++|+||+|+..            .+.++.++++++++.++ ++|+++|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~------------~r~v~~~~~~~~a~~~~-~~~~e~S  147 (167)
T d1xtqa1          82 VYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHM------------ERVISYEEGKALAESWN-AAFLESS  147 (167)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHHCSSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEECC
T ss_pred             hcccchhhhhhhhh-hhhhhhhhcccccccceeeecccccccc------------ccchhHHHHHHHHHHcC-CEEEEEe
Confidence            99999999999985 666655443  25789999999999866            36688899999999998 4999999


Q ss_pred             cCCcCCHHHHHHHHHHHHh
Q psy14754        161 AKSKEGVREVFETATRAAL  179 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~  179 (192)
                      |++|.||+++|+.|++.+.
T Consensus       148 ak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         148 AKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHhc
Confidence            9999999999999988764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=203.51  Aligned_cols=163  Identities=28%  Similarity=0.582  Sum_probs=136.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +.+||+++|++|+|||||++++.++.+.+.+.++..... ......++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            578999999999999999999999999988888776554 4566677888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||++++++++.+. .|+..+.. .....|+++++||+|+..            .+.++.++++.+++.++ ++++++||
T Consensus        82 v~d~~~~~Sf~~~~-~~~~~~~~~~~~~~~~ilvgnK~Dl~~------------~~~v~~~e~~~~a~~~~-~~~~e~Sa  147 (167)
T d1z08a1          82 VYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEK------------ERHVSIQEAESYAESVG-AKHYHTSA  147 (167)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGG------------GCCSCHHHHHHHHHHTT-CEEEEEBT
T ss_pred             EEeCCchhHHHhhh-hhhhhcccccccccceeeecccccccc------------ccccchHHHHHHHHHcC-CeEEEEec
Confidence            99999999999996 55554443 345789999999999976            36688899999999998 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      ++|.||+++|.+|.+.+++
T Consensus       148 k~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         148 KQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TTTBSHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhh
Confidence            9999999999999998864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=8.6e-37  Score=204.62  Aligned_cols=161  Identities=34%  Similarity=0.562  Sum_probs=141.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..+++.+|++++|||
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d   84 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFS   84 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEee
Confidence            69999999999999999999999999888888887777777889999999999999999998888889999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         86 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ++++.+++.+. .|+..+.+.  .++.|+++|+||+|+..            .+.++.+++..+++.++ ++++++||++
T Consensus        85 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piiivgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sak~  150 (168)
T d1u8za_          85 ITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLED------------KRQVSVEEAKNRADQWN-VNYVETSAKT  150 (168)
T ss_dssp             TTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGG------------GCCSCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred             ccchhhhhhHH-HHHHHHHHhhCCCCCcEEEEeccccccc------------cccccHHHHHHHHHHcC-CeEEEEcCCC
Confidence            99999999985 677776654  35899999999999865            36678889999999998 5999999999


Q ss_pred             cCCHHHHHHHHHHHHhh
Q psy14754        164 KEGVREVFETATRAALQ  180 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~  180 (192)
                      |.||+++|++|.+.+..
T Consensus       151 g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHC
Confidence            99999999999988754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-37  Score=205.28  Aligned_cols=162  Identities=30%  Similarity=0.489  Sum_probs=141.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++||+++|++|+|||||+++|+++.+...+.++....+......++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            68999999999999999999999999888888888777777788999999999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhh---hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKH---FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+++++++..+. .|...+..   ..++.|+++|+||+|+..            .+.+..+++.++++.++ ++|+++||
T Consensus        82 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilVgnK~Dl~~------------~~~v~~~e~~~~~~~~~-~~~~e~Sa  147 (171)
T d2erxa1          82 SITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESP------------SREVQSSEAEALARTWK-CAFMETSA  147 (171)
T ss_dssp             ETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGG------------GCCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred             ecccccchhccc-chhhhhhhhhccCCCCcEEEEeecccccc------------cccccHHHHHHHHHHcC-CeEEEEcC
Confidence            999999999996 55544432   346899999999999866            36678889999999998 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      ++|.||+++|+.|.+.+.+
T Consensus       148 k~~~~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         148 KLNHNVKELFQELLNLEKR  166 (171)
T ss_dssp             TTTBSHHHHHHHHHHTCCS
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999976543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-36  Score=201.87  Aligned_cols=163  Identities=34%  Similarity=0.531  Sum_probs=145.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      -.+||+++|++|+|||||++++.++.+...+.++....+...+..++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            35899999999999999999999999988888888777777778899999999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      ||+++++++..+. .|...+.+.  ..+.|+++++||+|+..            .+.++.+++.++++.++ ++|+++||
T Consensus        83 ~d~~d~~Sf~~~~-~~~~~i~~~~~~~~~p~ilvgnK~Dl~~------------~~~v~~e~~~~~~~~~~-~~~~e~Sa  148 (169)
T d1x1ra1          83 YSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMH------------LRKVTRDQGKEMATKYN-IPYIETSA  148 (169)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCST------------TCCSCHHHHHHHHHHHT-CCEEEEBC
T ss_pred             cccccchhhhccc-hhhHHHHhhccccCccEEEEecccchhh------------hceeehhhHHHHHHHcC-CEEEEEcC
Confidence            9999999999985 677766544  24799999999999976            46688899999999999 49999999


Q ss_pred             CCcC-CHHHHHHHHHHHHhh
Q psy14754        162 KSKE-GVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~-gi~~~~~~i~~~~~~  180 (192)
                      +++. ||+++|..|.+.+.+
T Consensus       149 k~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         149 KDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             SSSCBSHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHh
Confidence            9876 999999999998765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-36  Score=201.71  Aligned_cols=163  Identities=24%  Similarity=0.492  Sum_probs=142.4

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI   80 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   80 (192)
                      +++++||+++|.+|+|||||+++|.++.+...+.++..... ............+.+||++|++.+...+..+++.++++
T Consensus         1 ~~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (167)
T d1z0ja1           1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   80 (167)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccce
Confidence            36789999999999999999999999999888877766555 45556778888999999999999999999999999999


Q ss_pred             EEEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         81 LMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      |+|||+++++++..+. .|...... ..++.|+++|+||+|+..            .+.+..++++++++.++ ++|+++
T Consensus        81 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~  146 (167)
T d1z0ja1          81 IIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTD------------VREVMERDAKDYADSIH-AIFVET  146 (167)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CEEEEC
T ss_pred             EEEeeechhhhhhhHH-HhhhhhhhccCCcceEEEecccchhcc------------ccchhHHHHHHHHHHcC-CEEEEE
Confidence            9999999999999996 55544444 446899999999999965            36678889999999988 499999


Q ss_pred             ccCCcCCHHHHHHHHHHHH
Q psy14754        160 SAKSKEGVREVFETATRAA  178 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ||++|.||+++|.+|.+.+
T Consensus       147 SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         147 SAKNAININELFIEISRRI  165 (167)
T ss_dssp             BTTTTBSHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHHHhC
Confidence            9999999999999999876

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=202.68  Aligned_cols=165  Identities=32%  Similarity=0.555  Sum_probs=142.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|+|||||++++.++.+...+.++........+.+++..+.+.+||++|+..+...+...++.+|++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            45799999999999999999999999998888888888888888889999999999999999999988889999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||.++++++..+. .|...+.+.  ....|++||+||+|+..            .+.+..+++..+++.++ ++|+++|
T Consensus        83 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~S  148 (171)
T d2erya1          83 VFSVTDRGSFEEIY-KFQRQILRVKDRDEFPMILIGNKADLDH------------QRQVTQEEGQQLARQLK-VTYMEAS  148 (171)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHTSSCCSEEEEEECTTCTT------------SCSSCHHHHHHHHHHTT-CEEEECB
T ss_pred             eeccccccchhhHH-HHhHHHHhhcccCCCCEEEEEeccchhh------------hccchHHHHHHHHHHcC-CEEEEEc
Confidence            99999999999995 566554433  35799999999999866            46678889999999998 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhh
Q psy14754        161 AKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |++|.||+++|..|.+.+.+.
T Consensus       149 ak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         149 AKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHh
Confidence            999999999999999988544

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=201.55  Aligned_cols=163  Identities=31%  Similarity=0.457  Sum_probs=139.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      ++||+++|++|+|||||++++.++.+.+.+.|+.+..+......++..+.+.+||++|++.+. ....+++.++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            689999999999999999999999999998888887777777788999999999999998764 3445778899999999


Q ss_pred             ECCChhhhhchhhhhHHHH--hhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         85 SIDSPDSLENIPEKWTPEV--KHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~--~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+++++++..+. .|....  ....++.|+++|+||+|+..            .+.++.+++.++++.++ ++|+++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilvgnK~Dl~~------------~r~V~~~e~~~~a~~~~-~~~~e~Sak  146 (168)
T d2atva1          81 DITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDH------------SRQVSTEEGEKLATELA-CAFYECSAC  146 (168)
T ss_dssp             ETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGG------------GCCSCHHHHHHHHHHHT-SEEEECCTT
T ss_pred             ccCCccchhhhh-hhcccccccccccCcceeeeccchhhhh------------hccCcHHHHHHHHHHhC-CeEEEEccc
Confidence            999999999995 444333  23346899999999999965            36688899999999998 599999999


Q ss_pred             CcCC-HHHHHHHHHHHHhhhc
Q psy14754        163 SKEG-VREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~g-i~~~~~~i~~~~~~~~  182 (192)
                      +|.| |+++|..|.+.+.+++
T Consensus       147 tg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         147 TGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHHhc
Confidence            9985 9999999999887654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=202.82  Aligned_cols=163  Identities=34%  Similarity=0.545  Sum_probs=144.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ++++||+++|++|+|||||+++++++.+...+.++..+........++..+.+.+||++|++.+...+..+++++|++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            46899999999999999999999999999888888887777777889999999999999999999998899999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |||+++++++..+. .|...+...  .++.|++||+||+|+..            .+.....++..+++.++ .+++++|
T Consensus        81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilvgnK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~S  146 (167)
T d1kaoa_          81 VYSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLES------------EREVSSSEGRALAEEWG-CPFMETS  146 (167)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGG------------GCCSCHHHHHHHHHHHT-SCEEEEC
T ss_pred             eeeecchhhhhhhh-chhhhhhhhccCCCCCEEEEEEccchhh------------cccchHHHHHHHHHHcC-CeEEEEC
Confidence            99999999999996 566555443  35799999999999876            35567788889999888 4999999


Q ss_pred             cCCcCCHHHHHHHHHHHHh
Q psy14754        161 AKSKEGVREVFETATRAAL  179 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~  179 (192)
                      |++|.||+++|+.|.+.+.
T Consensus       147 ak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         147 AKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999988763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-36  Score=200.40  Aligned_cols=162  Identities=32%  Similarity=0.545  Sum_probs=140.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+++|++|+|||||++++.++.+...+.++..... ......++..+.+.+||+||++.+...+...++.+|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            358999999999999999999999998888776665444 5566788899999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|+++.++++.+. .|...+.. ..+..|+++++||.|+..            ......+++..+++.++ ++++++||
T Consensus        83 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sa  148 (166)
T d1z0fa1          83 VYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEA------------QRDVTYEEAKQFAEENG-LLFLEASA  148 (166)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred             EeccCchHHHHHHH-HHHHHHHhhccccceEEEEcccccchh------------hcccHHHHHHHHHHHcC-CEEEEEeC
Confidence            99999999999986 45555544 446899999999999866            35567788999999988 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHh
Q psy14754        162 KSKEGVREVFETATRAAL  179 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~  179 (192)
                      ++|.||+++|..|.+.++
T Consensus       149 ktg~~v~e~f~~i~~~i~  166 (166)
T d1z0fa1         149 KTGENVEDAFLEAAKKIY  166 (166)
T ss_dssp             TTCTTHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHhC
Confidence            999999999999998763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=199.60  Aligned_cols=167  Identities=31%  Similarity=0.442  Sum_probs=142.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +.+||+++|++|+|||||+++|.++.+...+.++..... ...+..+.....+.+||+||++.+...+..+++.++++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            458999999999999999999999998888777666554 4556778889999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+|.++++++..+...+........++.|+++|+||+|+..            ...........+++.++ ++++++||+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sak  150 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA------------DREVTFLEASRFAQENE-LMFLETSAL  150 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG------------GCCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred             EEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc------------hhchhhhHHHHHHHhCC-CEEEEeeCC
Confidence            99999999999986444444444456899999999999865            35566777888888887 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhcc
Q psy14754        163 SKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      +|+|++++|.++.+.+.++.+
T Consensus       151 ~~~gi~e~f~~l~~~i~~~~~  171 (174)
T d2bmea1         151 TGENVEEAFVQCARKILNKIE  171 (174)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHh
Confidence            999999999999999886643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-36  Score=199.33  Aligned_cols=161  Identities=30%  Similarity=0.492  Sum_probs=139.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|.+|+|||||+++|.++.+...+.++.+... ......++..+.+.+||++|++.+...+...++.++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6899999999999999999999999888877765444 455566778899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |++++.++..+...|........++.|+++|+||.|+.+            .+....+++..+++.++ ++|+++||++|
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~SAk~g  147 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD------------KRQVSIEEGERKAKELN-VMFIETSAKAG  147 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CEEEECCTTTC
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhh------------hhhhhHHHHHHHHHHcC-CEEEEecCCCC
Confidence            999999999996444444444557899999999999976            35567788999999998 59999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q psy14754        165 EGVREVFETATRAAL  179 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~  179 (192)
                      .||+++|++|.+++.
T Consensus       148 ~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         148 YNVKQLFRRVAAALP  162 (164)
T ss_dssp             TTHHHHHHHHHHHSC
T ss_pred             cCHHHHHHHHHHhhC
Confidence            999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=199.32  Aligned_cols=166  Identities=30%  Similarity=0.526  Sum_probs=138.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+|+|++|+|||||++++.++.+...+.++..... ............+.+||++|++.+...+...++.+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            458999999999999999999999998887766665444 4455667788999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++++++.+.+.|........++.|++||+||+|+..            .+....+++..+++.++ ++|+++||+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~------------~~~~~~~~~~~~a~~~~-~~~~e~Sa~  148 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES------------RRDVKREEGEAFAREHG-LIFMETSAK  148 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEEECTT
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhh------------hhhhHHHHHHHHHHHcC-CEEEEecCC
Confidence            99999999999996444444444446899999999999866            35667888999998888 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +|.||+++|.++.+.+.++.
T Consensus       149 tg~~V~e~f~~i~~~i~~~~  168 (173)
T d2a5ja1         149 TACNVEEAFINTAKEIYRKI  168 (173)
T ss_dssp             TCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999987543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-36  Score=200.42  Aligned_cols=162  Identities=33%  Similarity=0.591  Sum_probs=144.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+++|++|||||||+++|.++.+...+.++.+..+...+...+..+.+.+||++|++.+...+...++.++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            57999999999999999999999999998888888877777777888999999999999999998888899999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|++++.+++.+ ..|...+.+.  .++.|+++|+||+|+..             +.+..+++.++++.++ ++|+++||
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~e~Sa  146 (166)
T d1ctqa_          82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA-------------RTVESRQAQDLARSYG-IPYIETSA  146 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEECCT
T ss_pred             ecccccccHHHH-HHHHHHHHHhcCCCCCeEEEEeccccccc-------------ccccHHHHHHHHHHhC-CeEEEEcC
Confidence            999999999998 4788877654  35799999999999854             5567788899999988 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhh
Q psy14754        162 KSKEGVREVFETATRAALQ  180 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~  180 (192)
                      ++|+||+++|.+|.+.+.+
T Consensus       147 k~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         147 KTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHh
Confidence            9999999999999988754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-35  Score=200.31  Aligned_cols=165  Identities=28%  Similarity=0.508  Sum_probs=143.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+|+|++|+|||||+++|.++.+...+.++.+... ...+.+.+..+.+.+|||||++.+...|..+++.++++|+
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            458999999999999999999999998888777776554 4567788999999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |+|+++++++......|.........+.|+++|+||+|+..            ...+..++...++...+ .+++++||+
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~e~SAk  151 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD------------KRVVEYDVAKEFADANK-MPFLETSAL  151 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT------------TCCSCHHHHHHHHHHTT-CCEEECCTT
T ss_pred             EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc------------ccchhHHHHhhhhhccC-cceEEEecC
Confidence            99999999999986544444444567899999999999876            35567788888888877 589999999


Q ss_pred             CcCCHHHHHHHHHHHHhhh
Q psy14754        163 SKEGVREVFETATRAALQV  181 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~  181 (192)
                      +|.|++++|+++.+.+...
T Consensus       152 ~g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         152 DSTNVEDAFLTMARQIKES  170 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHHHHHH
Confidence            9999999999999888765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-35  Score=200.08  Aligned_cols=166  Identities=30%  Similarity=0.516  Sum_probs=112.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+++|.+++|||||+++|+++.+...+.++.+.. ....+..++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            34899999999999999999999998888777776644 35677888889999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++.++..+...+........++.|+++|+||.|+..            ......+++..++...+ ++++++||+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sa~  151 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND------------KRQVSKERGEKLALDYG-IKFMETSAK  151 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS------------CCCSCHHHHHHHHHHHT-CEEEECCC-
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh------------hcccHHHHHHHHHHhcC-CEEEEEeCC
Confidence            99999999999986444444445557899999999999876            34566677788888887 599999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +|+||+++|++|.+.+.++.
T Consensus       152 ~g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         152 ANINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             --CCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999886654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=197.72  Aligned_cols=166  Identities=33%  Similarity=0.538  Sum_probs=137.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      +-+||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||++|++.|...+...++.++++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            45899999999999999999999999888776666543 35566788899999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||.++++++.... .|+..+.... ++.|+++|+||+|+...            +....+....+...++ .+++++||
T Consensus        83 v~d~~~~~S~~~~~-~~~~~i~~~~~~~~piilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa  148 (175)
T d2f9la1          83 VYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNN-LSFIETSA  148 (175)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred             EEECCCcccchhHH-HHHHHHHHhcCCCCcEEEEEeeeccccc------------ccchHHHHHHhhcccC-ceEEEEec
Confidence            99999999999996 5555555544 67999999999999762            4455566667777766 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhhcc
Q psy14754        162 KSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ++|+|++++|+++.+.+.+...
T Consensus       149 ~~g~~i~e~f~~l~~~i~~~~~  170 (175)
T d2f9la1         149 LDSTNVEEAFKNILTEIYRIVS  170 (175)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999875443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-35  Score=197.95  Aligned_cols=163  Identities=30%  Similarity=0.516  Sum_probs=141.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .+||+++|++|+|||||+++|.++.+.+.+.++.+... ..........+.+.+||++|++.+...+..++++++++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            68999999999999999999999999888777766554 45666788889999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      +|.++.+++..+...|....+...++.|+++|+||+|+..            .+.++.++++.+++.++ ++|+++||++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~------------~~~v~~e~~~~~~~~~~-~~~~e~SAk~  152 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN------------KRAVDFQEAQSYADDNS-LLFMETSAKT  152 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG------------GCCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc------------cccccHHHHHHHHHhcC-CEEEEeeCCC
Confidence            9999999999996544444455567899999999999876            46678889999999888 5999999999


Q ss_pred             cCCHHHHHHHHHHHHhh
Q psy14754        164 KEGVREVFETATRAALQ  180 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~~~  180 (192)
                      |.||+++|..|.+.+.+
T Consensus       153 g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         153 SMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             CTTHHHHHHHHHHTSCC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999887653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-35  Score=197.96  Aligned_cols=165  Identities=27%  Similarity=0.500  Sum_probs=127.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE-E-ECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-E-VDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      +||+++|++|+|||||+++|.++.+...+.++.+....... . .......+.+||++|++.+...+..+++.++++++|
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLV   82 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEE
Confidence            79999999999999999999999988877766654443322 2 234557799999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh-----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      ||++++.++..+. .|...+...     .++.|+++++||+|+...           .+.+..++++++++.++..++++
T Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~v~~~~~~~~~~~~~~~~~~e  150 (175)
T d1ky3a_          83 YDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEES-----------KKIVSEKSAQELAKSLGDIPLFL  150 (175)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-----------GCCSCHHHHHHHHHHTTSCCEEE
T ss_pred             eecccccccchhh-hcchhhhhhhhhcccccCcEEEEecccchhhh-----------hcchhHHHHHHHHHHcCCCeEEE
Confidence            9999999998874 777766532     247899999999998653           34567788899999988789999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        159 CSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +||++|.||+++|++|.+.+.+++
T Consensus       151 ~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         151 TSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHhcc
Confidence            999999999999999999887765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-36  Score=201.57  Aligned_cols=163  Identities=29%  Similarity=0.507  Sum_probs=133.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||++|+..+...+..++++++++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            36899999999999999999999999988877776533 35566677888999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      |||++++++++.+. .|+..+.+..++.|+++|+||+|+....              ...+...++...+ ++|+++||+
T Consensus        82 v~d~~~~~Sf~~~~-~~~~~~~~~~~~~piilvgnK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~e~Sak  145 (170)
T d1i2ma_          82 MFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKN-LQYYDISAK  145 (170)
T ss_dssp             EEETTSGGGGTTHH-HHHHHHHHHHCSCCEEEEEECCCCSCSC--------------CTTTSHHHHSSCS-SEEEEEBTT
T ss_pred             ccccccccccchhH-HHHHHHhhccCCCceeeecchhhhhhhh--------------hhhHHHHHHHHcC-CEEEEEeCC
Confidence            99999999999995 6777777777899999999999986532              1223446666666 699999999


Q ss_pred             CcCCHHHHHHHHHHHHhhhc
Q psy14754        163 SKEGVREVFETATRAALQVK  182 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +|.|++++|.+|.+.+...+
T Consensus       146 ~~~~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         146 SNYNFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             TTBTTTHHHHHHHHHHHTCT
T ss_pred             CCCCHHHHHHHHHHHHccCC
Confidence            99999999999999887543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-35  Score=196.42  Aligned_cols=164  Identities=28%  Similarity=0.505  Sum_probs=143.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .+||+++|++|+|||||++++.++.+.+.+.++.+..+ ...+...+..+.+.+||++|++.+...+..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999999999999999988888776544 56778889999999999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS  163 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (192)
                      ||++++.++..+...|...........|+++++||+|+.....         .+.+..+++..+++.++. +|+++||++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~---------~~~v~~~~~~~~~~~~~~-~~~e~Sak~  152 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGG---------ERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSC---------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccc---------hhhhhHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999986444444444556899999999999876433         577888999999999984 999999999


Q ss_pred             cCCHHHHHHHHHHHH
Q psy14754        164 KEGVREVFETATRAA  178 (192)
Q Consensus       164 ~~gi~~~~~~i~~~~  178 (192)
                      |.||+++|..|.+.+
T Consensus       153 g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         153 GENVNDVFLGIGEKI  167 (170)
T ss_dssp             CTTHHHHHHHHHTTS
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=193.73  Aligned_cols=163  Identities=29%  Similarity=0.476  Sum_probs=131.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc-ee-eeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-VF-ENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      .-+||+++|++++|||||+++++++.+.....++ .+ +.....+..++..+.+.+|||||++.+...+...++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            3589999999999999999999999876554333 33 333556678888899999999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      +|+|+++++++..+...|...........|+++++||.|+..            ...+..+++..+++.++ ++++++||
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa  151 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH------------ERVVKREDGEKLAKEYG-LPFMETSA  151 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS------------CCCSCHHHHHHHHHHHT-CCEEECCT
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh------------cccccHHHHHHHHHHcC-CEEEEEeC
Confidence            999999999999997555555555556889999999999876            46678889999999988 59999999


Q ss_pred             CCcCCHHHHHHHHHHHHh
Q psy14754        162 KSKEGVREVFETATRAAL  179 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~  179 (192)
                      ++|.||+++|++|.+.+.
T Consensus       152 k~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         152 KTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHcC
Confidence            999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-34  Score=193.63  Aligned_cols=162  Identities=28%  Similarity=0.602  Sum_probs=135.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+++|++|+|||||+++|+++.+...+.++.+... ...+..++..+.+.+|||||++.+...+..++++++++++|+
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY   82 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            7999999999999999999999999888877776555 567778888999999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      |.+++++++.+...+...........|++++++|.|+..             +....++.+.++..++ ++++++||++|
T Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  148 (166)
T d1g16a_          83 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSAKND  148 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-------------CCSCHHHHHHHHHHHT-CCEEECBTTTT
T ss_pred             ECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-------------hhhhHHHHHHHHHhcC-CeEEEECCCCC
Confidence            999999999986444444555556789999999999865             4566788889999888 59999999999


Q ss_pred             CCHHHHHHHHHHHHhhh
Q psy14754        165 EGVREVFETATRAALQV  181 (192)
Q Consensus       165 ~gi~~~~~~i~~~~~~~  181 (192)
                      +|++++|++|.+.+.++
T Consensus       149 ~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         149 DNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             BSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999887653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-34  Score=191.17  Aligned_cols=162  Identities=33%  Similarity=0.598  Sum_probs=137.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      -+||+|+|++|+|||||++++.++.+...+.++..... .......+..+.+.+||++|...+...+...+..+++++++
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~   85 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT   85 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEE
Confidence            47999999999999999999999999888777665554 55666788889999999999999888999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh-----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE  158 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
                      +|.+++.+++.+. .|.+.+...     .++.|+++|+||.|+.+             +.+..++++++++..+.++|++
T Consensus        86 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-------------~~v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          86 FSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHTTCCCEEE
T ss_pred             Eeeecccccchhh-hHHHHHHHHhccccCCCceEEEeccccchhh-------------ccCcHHHHHHHHHHcCCCeEEE
Confidence            9999999999985 677666542     24789999999999854             5678889999998887689999


Q ss_pred             eccCCcCCHHHHHHHHHHHHhh
Q psy14754        159 CSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      +||++|.||+++|+++.+.++.
T Consensus       152 ~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=190.93  Aligned_cols=164  Identities=32%  Similarity=0.610  Sum_probs=142.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999998887766665544 5566788899999999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      |+|++++.+++... .|+..+.+..  ...|+++++||.|...             +.+...++..+++.++ ++++++|
T Consensus        86 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~i~~~~nk~d~~~-------------~~v~~~~~~~~~~~~~-~~~~e~S  150 (177)
T d1x3sa1          86 VYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-------------REVDRNEGLKFARKHS-MLFIEAS  150 (177)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred             EEECCCccccccch-hhhhhhcccccccceeeEEEeecccccc-------------ccccHHHHHHHHHHCC-CEEEEEe
Confidence            99999999999885 6776665543  4689999999999754             5677888999999988 5999999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhhc
Q psy14754        161 AKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      |++|+|++++|+++.+.+.+..
T Consensus       151 a~tg~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         151 AKTCDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTSG
T ss_pred             CCCCCCHHHHHHHHHHHHccCc
Confidence            9999999999999999988765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-35  Score=198.39  Aligned_cols=166  Identities=30%  Similarity=0.524  Sum_probs=139.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC----------CeEEEEEEEeCCCCCcccccccc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD----------SKQVELALWDTAGQEDYDRLRPL   72 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~   72 (192)
                      +-+||+++|++|+|||||+++|.++.+...+.++....+ ...+.++          ...+.+.+||++|++.|...+..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            358999999999999999999999998887766665443 3333222          23578999999999999999999


Q ss_pred             cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754         73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK  150 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (192)
                      +++++|++|+|||++++.+++.+. .|...+...  .+..|+++|+||.|+..            .+.+..+++.++++.
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~------------~~~v~~~e~~~~~~~  150 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPD------------QREVNERQARELADK  150 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGG------------GCCSCHHHHHHHHHH
T ss_pred             HHhcCCEEEEEEeccccccceeee-eccchhhhhccCCCceEEEEeeeccchh------------hhcchHHHHHHHHHH
Confidence            999999999999999999999985 677665543  35688999999999976            366888999999999


Q ss_pred             cCCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        151 INAFAYLECSAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ++ ++++++||++|+||+++|++|.+.+.++.+
T Consensus       151 ~~-~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         151 YG-IPYFETSAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             TT-CCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             cC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            98 599999999999999999999998876543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-33  Score=191.21  Aligned_cols=164  Identities=30%  Similarity=0.569  Sum_probs=139.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   84 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   84 (192)
                      +||+|+|.+|+|||||+++|.++.+...+.++.+... .......+..+.+.+||++|+..+...+...+..++++++++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            7999999999999999999999999888777765443 556677888899999999999999999999999999999999


Q ss_pred             ECCChhhhhchhhhhHHHHhhh-----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         85 SIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        85 d~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      |.++..++..+. .|++.+...     ..+.|+++|+||+|+..             +.+..++..+++.....++++++
T Consensus        83 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~e~  148 (184)
T d1vg8a_          83 DVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPYFET  148 (184)
T ss_dssp             ETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-------------CCSCHHHHHHHHHHTTSCCEEEC
T ss_pred             cccchhhhhcch-hhHHHHHHHhccccccCCCEEEEEEeecccc-------------cchhHHHHHHHHHHhcCCeEEEE
Confidence            999999999984 777666543     23689999999999854             44666777778776666799999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754        160 SAKSKEGVREVFETATRAALQVKK  183 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~~~  183 (192)
                      ||++|.||+++|+++.+.+.+.+.
T Consensus       149 Sak~~~gI~e~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         149 SAKEAINVEQAFQTIARNALKQET  172 (184)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHhccc
Confidence            999999999999999998887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-33  Score=187.69  Aligned_cols=165  Identities=19%  Similarity=0.352  Sum_probs=137.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+++|++|+|||||+++++++.+... .++....+.+.+.+++..+.+.+||++|+..+.     +++.+|++|+|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            479999999999999999999999998664 455556666777889999999999999987653     56789999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      ||++++++|+.+. .|...+...    .++.|+++|+||.|+....          .+.+...++..++......+|+++
T Consensus        78 fd~~~~~Sf~~~~-~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~----------~~~v~~~~~~~~~~~~~~~~~~e~  146 (175)
T d2bmja1          78 FSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASS----------PRVVGDARARALCADMKRCSYYET  146 (175)
T ss_dssp             EETTCHHHHHHHH-HHHHHHHHHCC--CCCCEEEEEEECTTCCSSS----------CCCSCHHHHHHHHHTSTTEEEEEE
T ss_pred             eecccchhhhhhH-HHHHHHHHHhhcccCCccEEEEeeecCcchhh----------hcchhHHHHHHHHHHhCCCeEEEe
Confidence            9999999999984 677766543    2467999999999986542          366788888889877766799999


Q ss_pred             ccCCcCCHHHHHHHHHHHHhhhcccc
Q psy14754        160 SAKSKEGVREVFETATRAALQVKKKK  185 (192)
Q Consensus       160 Sa~~~~gi~~~~~~i~~~~~~~~~~~  185 (192)
                      ||++|.|++++|..+.+.+...++++
T Consensus       147 SAk~~~~v~~~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         147 CATYGLNVDRVFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999998876543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-33  Score=187.23  Aligned_cols=163  Identities=26%  Similarity=0.379  Sum_probs=131.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCc-eeeeeeEEEEECCeEEEEEEEeCCC---CCcccccccccCCCCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPT-VFENYVADIEVDSKQVELALWDTAG---QEDYDRLRPLSYPDTD   78 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~D~~g---~~~~~~~~~~~~~~~~   78 (192)
                      ..+||+++|++|+|||||+++|.+..+.... .++ ........+.+++..+.+.+||+++   ++++  .+..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            4689999999999999999999987654332 222 3345566778889999999999875   4443  4566789999


Q ss_pred             EEEEEEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         79 VILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        79 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      ++|+|||++++++++.+. .|...+...  .++.|+++|+||+|+..            .+.++.++++.+++.++ ++|
T Consensus        80 ~~ilvfd~t~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~  145 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVR------------CREVSVSEGRACAVVFD-CKF  145 (172)
T ss_dssp             EEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEE
T ss_pred             eeeeeecccccchhhhhh-hhhhhhhhccccCCceEEEEeccccccc------------cccccHHHHHHHHHHcC-CeE
Confidence            999999999999999985 566655432  35899999999999876            35678888999999988 599


Q ss_pred             EEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        157 LECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      +++||++|.||+++|+.|.+.+..++
T Consensus       146 ~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         146 IETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            99999999999999999999886654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-32  Score=181.81  Aligned_cols=157  Identities=29%  Similarity=0.581  Sum_probs=133.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc-cccccCCCCCEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR-LRPLSYPDTDVIL   81 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i   81 (192)
                      +-+||+++|++|+|||||+++|..+.+...+.++.+... ............+.+||++|...+.. .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999998888777766554 56667888999999999999877654 4567889999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      +|||++++++++.+. .|+..+.+..  ++.|++||+||+|+..            .+.++.+++.++++.++ ++++++
T Consensus        81 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pi~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~  146 (165)
T d1z06a1          81 FVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRS------------AIQVPTDLAQKFADTHS-MPLFET  146 (165)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CCEEEC
T ss_pred             EEEEeehhhhhhhhh-hhhHHHHhhccCCCCeEEEEeccccchh------------ccchhHHHHHHHHHHCC-CEEEEE
Confidence            999999999999984 6776665543  5899999999999976            35678889999999998 499999


Q ss_pred             ccCC---cCCHHHHHHHH
Q psy14754        160 SAKS---KEGVREVFETA  174 (192)
Q Consensus       160 Sa~~---~~gi~~~~~~i  174 (192)
                      ||++   ++||+++|.+|
T Consensus       147 SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         147 SAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             CSSSGGGGSCHHHHHHHH
T ss_pred             ecccCCcCcCHHHHHHHh
Confidence            9987   56999999876

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=186.70  Aligned_cols=162  Identities=22%  Similarity=0.323  Sum_probs=123.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      .++||+++|++|+|||||+++|.++.+...+.++.+.... .+  +...+.+.+||+||++.+...+..++..++++++|
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KI--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EE--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-ee--eeeeEEEEEeeccccccccccccccccccchhhcc
Confidence            3799999999999999999999999988877776554332 22  33457899999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      ||+++.+++......|...+... .++.|+++|+||.|+..........+.+..         ..+... .++++++||+
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~---------~~~~~~-~~~~~e~Sa~  147 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL---------SAIQDR-EICCYSISCK  147 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG---------GGCCSS-CEEEEECCTT
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHH---------HHHHhC-CCEEEEEeCc
Confidence            99999999998865555555443 368999999999998764322211111100         111112 2589999999


Q ss_pred             CcCCHHHHHHHHHHHH
Q psy14754        163 SKEGVREVFETATRAA  178 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~  178 (192)
                      +|+|++++|++|.+.+
T Consensus       148 ~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         148 EKDNIDITLQWLIQHS  163 (164)
T ss_dssp             TCTTHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHcc
Confidence            9999999999998754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=1.2e-32  Score=183.80  Aligned_cols=163  Identities=15%  Similarity=0.244  Sum_probs=121.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      +++||+++|++|||||||+++|.+..+.. ..++.+.. ..  .+...++.+.+||+||++.++..+...++.+++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~-~~~t~~~~-~~--~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFN-IK--TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSS-CCCCSSEE-EE--EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCc-ccceEeee-ee--eccccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            47899999999999999999999877643 23333322 22  2334557899999999999999999999999999999


Q ss_pred             EECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754         84 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK  162 (192)
Q Consensus        84 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (192)
                      +|+++..++......|...+... ..+.|++||+||+|+.+..........+..         ... ....++++++||+
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~Sa~  146 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL---------DSI-RSHHWRIQGCSAV  146 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG---------GGC-CSSCEEEEECCTT
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHh---------hhh-hcCCCEEEEEECC
Confidence            99999999988877777666533 368999999999998653322111111000         000 1123578999999


Q ss_pred             CcCCHHHHHHHHHHHHhh
Q psy14754        163 SKEGVREVFETATRAALQ  180 (192)
Q Consensus       163 ~~~gi~~~~~~i~~~~~~  180 (192)
                      +|+|++++|++|.+++..
T Consensus       147 ~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         147 TGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             TCTTHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHc
Confidence            999999999999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.6e-32  Score=185.07  Aligned_cols=162  Identities=19%  Similarity=0.327  Sum_probs=119.0

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      .+++||+++|++|||||||+++|.++.+.........  ....  +...++.+.+||++|++.+...+...++.+|++++
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~--~~~~--i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   89 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF--NIKS--VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE--EEEE--EEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeee--eEEE--eccCCeeEeEeeccccccchhHHHHHhhccceeEE
Confidence            4689999999999999999999999877543221111  1222  23345789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |||+++..++......|........ .+.|++|++||+|+..........+.+..         .... ...++++++||
T Consensus        90 v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~SA  159 (176)
T d1fzqa_          90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL---------HTIR-DRVWQIQSCSA  159 (176)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG---------GGCC-SSCEEEEECCT
T ss_pred             eeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHH---------HHHH-hcCCEEEEEeC
Confidence            9999999999988655555544332 47899999999999764322111111000         0111 12368999999


Q ss_pred             CCcCCHHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRAA  178 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~  178 (192)
                      ++|+|++++|++|.+.+
T Consensus       160 ~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         160 LTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             TTCTTHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhcC
Confidence            99999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=6.1e-32  Score=183.14  Aligned_cols=165  Identities=17%  Similarity=0.259  Sum_probs=116.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      .+++||+++|++|||||||++++....+... .++.... ..  .....++.+.+||+||++.+...+..+++.++++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~-~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   90 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN-VE--TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIF   90 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCC-EE--EEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceE-EE--EEeeCCEEEEEEecccccccchhHHhhhccceeEEE
Confidence            4689999999999999999999987765433 2222211 11  223345789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|+++..++......|...+... ..+.|++|++||+|+.......+....+...         .+... .+++++|||
T Consensus        91 v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~---------~~~~~-~~~~~e~SA  160 (182)
T d1moza_          91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLV---------ELKDR-SWSIVASSA  160 (182)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTT---------TCCSS-CEEEEEEBG
T ss_pred             EeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHH---------HHhhC-CCEEEEEEC
Confidence            999999999888765555545433 3579999999999986532211111111000         01112 268999999


Q ss_pred             CCcCCHHHHHHHHHHHHhhh
Q psy14754        162 KSKEGVREVFETATRAALQV  181 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++|+|++++|++|.+.+.++
T Consensus       161 ~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHc
Confidence            99999999999999988664

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=179.36  Aligned_cols=162  Identities=20%  Similarity=0.270  Sum_probs=119.1

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+++|++|||||||++++..+.+.... ++..   ..........+.+.+||+||+..++..+..+++.++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVG---FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETT---EEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceee---eeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            35799999999999999999999987754322 1111   1112233345789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA  161 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (192)
                      |+|+++.+++..+.+.|...+... ..+.|+++++||+|+............+         ....+... .++++++||
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~---------~~~~~~~~-~~~~~e~SA  155 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKL---------GLTRIRDR-NWYVQPSCA  155 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHT---------TGGGCCSS-CEEEEECBT
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHH---------HHHHHHhC-CCEEEEeeC
Confidence            999999999999876666655543 3589999999999997643221111110         00111112 257899999


Q ss_pred             CCcCCHHHHHHHHHHHH
Q psy14754        162 KSKEGVREVFETATRAA  178 (192)
Q Consensus       162 ~~~~gi~~~~~~i~~~~  178 (192)
                      ++|+||+++|++|.+.+
T Consensus       156 ~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         156 TSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TTTBTHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHhc
Confidence            99999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=2.8e-30  Score=171.19  Aligned_cols=159  Identities=18%  Similarity=0.274  Sum_probs=118.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   85 (192)
                      +||+++|++|||||||+++|.++.+..........    ....+...+.+.+||+||...+...+...+..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            69999999999999999999998876553333222    22344566789999999999998888899999999999999


Q ss_pred             CCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy14754         86 IDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK  164 (192)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (192)
                      ..++.++......+....... ....|+++++||.|+.......+..         ......++...+ ++++++||++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~---------~~~~~~~~~~~~-~~~~~~SAktg  146 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT---------DKLGLHSLRHRN-WYIQATCATSG  146 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHH---------HHTTGGGCSSCC-EEEEECBTTTT
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHH---------HHHHHHHHhhCC-CEEEEeECCCC
Confidence            999999888865555555433 3578999999999987643211110         000111222233 68999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy14754        165 EGVREVFETATRAA  178 (192)
Q Consensus       165 ~gi~~~~~~i~~~~  178 (192)
                      +|++++|++|.+++
T Consensus       147 ~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         147 DGLYEGLDWLSNQL  160 (160)
T ss_dssp             BTHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhcC
Confidence            99999999998764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.2e-28  Score=166.26  Aligned_cols=159  Identities=19%  Similarity=0.143  Sum_probs=112.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc--------cccCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR--------PLSYPD   76 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~~~   76 (192)
                      .-.|+|+|.+|+|||||+|+|++...........++...........+..+.+|||||........        ...+++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~   84 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD   84 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence            447999999999999999999987654332222222222221222334578999999975543222        234678


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      +|++|+|+|++++  +....+.|...++....+.|+++|+||+|+....               .+....+.+.++...+
T Consensus        85 ad~il~v~D~~~~--~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~---------------~~~~~~~~~~~~~~~~  147 (178)
T d1wf3a1          85 VNAVVWVVDLRHP--PTPEDELVARALKPLVGKVPILLVGNKLDAAKYP---------------EEAMKAYHELLPEAEP  147 (178)
T ss_dssp             CSEEEEEEETTSC--CCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH---------------HHHHHHHHHTSTTSEE
T ss_pred             ccceeeeechhhh--hcccccchhhheeccccchhhhhhhcccccccCH---------------HHHHHHHHhhcccCce
Confidence            9999999999876  3334456777777777789999999999986521               2333445555665688


Q ss_pred             EEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        157 LECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      +++||+++.|+++++++|.+.+.+
T Consensus       148 ~~iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         148 RMLSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             EECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EEEecCCCCCHHHHHHHHHHhCCC
Confidence            999999999999999999987754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=159.45  Aligned_cols=166  Identities=17%  Similarity=0.234  Sum_probs=121.5

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   81 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   81 (192)
                      +..++||+++|++|||||||++++.++.+.... ++....   ......+...+.+||.+|...+...+...+...++++
T Consensus         2 m~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (169)
T d1upta_           2 MTREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN---VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   77 (169)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEE---EEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhCCCCccee-ccccee---eeeeccCceEEEEeeccccccccccchhhhhhhhhhh
Confidence            567899999999999999999999999876542 222211   1122334568899999999999999999999999999


Q ss_pred             EEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754         82 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS  160 (192)
Q Consensus        82 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (192)
                      +++|+.+..++......+...... .....|+++++||.|+.......+...         .....++...+ ++++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~---------~~~~~~~~~~~-~~~~~~S  147 (169)
T d1upta_          78 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMAN---------SLGLPALKDRK-WQIFKTS  147 (169)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHH---------HHTGGGCTTSC-EEEEECC
T ss_pred             hhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHH---------HHHHHHHhcCC-CEEEEEe
Confidence            999999887777776555554443 235789999999999976432211111         01111222223 6899999


Q ss_pred             cCCcCCHHHHHHHHHHHHhhh
Q psy14754        161 AKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       161 a~~~~gi~~~~~~i~~~~~~~  181 (192)
                      |++|+||+++|++|.+.+.++
T Consensus       148 A~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         148 ATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999887543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=160.71  Aligned_cols=158  Identities=19%  Similarity=0.285  Sum_probs=112.7

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      ..++||+|+|.+|||||||++++.+..+........ .. ...  .......+.+||+++++.....+...+..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-SN-VEE--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC-SS-CEE--EEETTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccc-ee-EEE--EeecceEEEEeccccccccccchhhhhccceeeee
Confidence            468999999999999999999999988754322221 11 112  22234789999999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHh-hhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----HcCCceEE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KINAFAYL  157 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  157 (192)
                      ++|.++..++......+..... ....+.|+++|+||+|+......              .+......    .....+++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--------------~~i~~~~~~~~~~~~~~~~~  154 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV--------------AEISQFLKLTSIKDHQWHIQ  154 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH--------------HHHHHHHTGGGCCSSCEEEE
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH--------------HHHHHHHHHHhhHhcCCEEE
Confidence            9999998888776433333332 23358999999999998664321              12222111    11236899


Q ss_pred             EeccCCcCCHHHHHHHHHHHH
Q psy14754        158 ECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ++||++|+|+++++++|.+++
T Consensus       155 ~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         155 ACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.2e-27  Score=158.70  Aligned_cols=152  Identities=22%  Similarity=0.282  Sum_probs=110.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc--------ccccCCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL--------RPLSYPDT   77 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~   77 (192)
                      +||+++|++|||||||+|+|++.........+..+.......+...+..+.+||+||.......        ....+..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            6999999999999999999998876543333333322222233334467899999996543322        22345789


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL  157 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
                      |++++++|..+..+.... +.|...+.....+.|+++|+||+|+..+....                    .+....+++
T Consensus        82 d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~--------------------~~~~~~~~~  140 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLGM--------------------SEVNGHALI  140 (161)
T ss_dssp             SEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE--------------------EEETTEEEE
T ss_pred             cccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhHHHH--------------------HHhCCCcEE
Confidence            999999999988766665 46667777666689999999999987643211                    112336899


Q ss_pred             EeccCCcCCHHHHHHHHHHHH
Q psy14754        158 ECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      ++||+++.|+++++++|.+.+
T Consensus       141 ~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         141 RLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHhhC
Confidence            999999999999999998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.3e-27  Score=163.14  Aligned_cols=170  Identities=19%  Similarity=0.243  Sum_probs=118.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      +++||+++|..|+|||||+++|....++..+.        ....++.....+++||++|++.+...|..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~--------~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGI--------VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSE--------EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccE--------EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            47999999999999999999998876654322        1123344557899999999999999999999999999999


Q ss_pred             EECCChhhhhchhh----------hhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCC---CCCHHHHHH---
Q psy14754         84 FSIDSPDSLENIPE----------KWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQE---PVKPEEGRA---  146 (192)
Q Consensus        84 ~d~~~~~~~~~~~~----------~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~---  146 (192)
                      +|+++..++.....          .|...+.. ...+.|+++++||.|+..............+.   .....+...   
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            99999887765432          23333333 23578999999999985432221111111111   111222211   


Q ss_pred             --HHHHc-----CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        147 --MAQKI-----NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       147 --~~~~~-----~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                        +.+..     ..+++++|||+++.||+++|+.+.+.++..
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence              11111     225678899999999999999998877653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=8.7e-27  Score=159.58  Aligned_cols=174  Identities=20%  Similarity=0.198  Sum_probs=124.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      +++||+++|..|||||||+++|..+.+.  +.||.+...   ..+....+.+++||++|++.++..|..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIE---YPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEE---EEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEE---EEEeccceeeeeccccccccccccccccccccceeeEe
Confidence            4799999999999999999999988774  356554332   23445667899999999999999999999999999999


Q ss_pred             EECCChhhhh----------chhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhh----hccCCCCCHHHHHHHH
Q psy14754         84 FSIDSPDSLE----------NIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELN----KMKQEPVKPEEGRAMA  148 (192)
Q Consensus        84 ~d~~~~~~~~----------~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  148 (192)
                      +|.++.+.+.          +..+.|...+... ..+.|+++++||.|+...........    ..............+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998875432          2234577666543 46899999999999965333222111    1112222333333332


Q ss_pred             HH---------cCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        149 QK---------INAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       149 ~~---------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ..         ...+.++++||+++.||+++|+.+.+.+.+.+
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            11         11245789999999999999999998887654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.8e-26  Score=149.80  Aligned_cols=163  Identities=19%  Similarity=0.314  Sum_probs=115.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI   86 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   86 (192)
                      ||+++|++|+|||||+++|.++.+... .++.....   ...........+||++|...+...+......++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPTS---EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCSCEE---EEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-eceeeEeE---EEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            799999999999999999999887643 33332222   23444556789999999999999999999999999999999


Q ss_pred             CChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy14754         87 DSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE  165 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (192)
                      ++..++......+...... ...+.|+++++||.|+............+........  ..+... ..++++++||++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~--~~~~~~-~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGS--QRIEGQ-RPVEVFMCSVVMRN  154 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC-----CCSS-CCEEEEEEBTTTTB
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHH--Hhhccc-CCCEEEEeeCCCCC
Confidence            9988877775444443332 2357899999999999764433222222111111101  111111 22579999999999


Q ss_pred             CHHHHHHHHHH
Q psy14754        166 GVREVFETATR  176 (192)
Q Consensus       166 gi~~~~~~i~~  176 (192)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=3.9e-27  Score=158.74  Aligned_cols=167  Identities=19%  Similarity=0.149  Sum_probs=109.9

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee------eEEEEECCeEEEEEEEeCCCCCcccccccccC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY------VADIEVDSKQVELALWDTAGQEDYDRLRPLSY   74 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   74 (192)
                      |+.+.++|+++|++|+|||||+|+|++............+..      .....+...+..+.++|+||+..|.......+
T Consensus         1 ~~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           1 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhh
Confidence            888999999999999999999999997543222111111110      00011112335688999999998888888888


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH---c
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK---I  151 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  151 (192)
                      ..+|++++++|+.++...+.  ......+...  +.|+++|+||+|+........          .......+...   .
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~--~~~~~~~~~~--~~p~iiv~NKiD~~~~~~~~~----------~~~~~~~~~~~~~~~  146 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQT--GEHMLILDHF--NIPIIVVITKSDNAGTEEIKR----------TEMIMKSILQSTHNL  146 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCBCEEEECTTSSCHHHHHH----------HHHHHHHHHHHSSSG
T ss_pred             hhccccccccccccccchhh--hhhhhhhhhc--CCcceeccccccccCHHHHHH----------HHHHHHHHHHHhhcC
Confidence            89999999999998632222  2333444443  799999999999876322110          01111222221   2


Q ss_pred             CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        152 NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ...+++++||++|+|++++++.|.+.+.+.
T Consensus       147 ~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         147 KNSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             GGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             CCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            235899999999999999999999887654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.93  E-value=5.5e-26  Score=158.42  Aligned_cols=177  Identities=15%  Similarity=0.198  Sum_probs=112.0

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eE----------------EEEECCeEEEEEEEeCCCC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VA----------------DIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~l~D~~g~   63 (192)
                      |..++..|+|+|++++|||||+++|++...........+... ..                ...+......+.++||||+
T Consensus         1 ~~~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh   80 (227)
T d1g7sa4           1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH   80 (227)
T ss_dssp             CEECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred             CCCCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccce
Confidence            334445599999999999999999987532221111111000 00                0112344557899999999


Q ss_pred             CcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh---hhccCCCCC
Q psy14754         64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL---NKMKQEPVK  140 (192)
Q Consensus        64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~  140 (192)
                      ..|.......+..+|++|+|+|+.++  ++...+..+..+...  +.|+||++||+|+..........   .........
T Consensus        81 ~~f~~~~~~~~~~~D~~ilVvda~~g--~~~~~~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~  156 (227)
T d1g7sa4          81 EAFTTLRKRGGALADLAILIVDINEG--FKPQTQEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (227)
T ss_dssp             SCCTTSBCSSSBSCSEEEEEEETTTC--CCHHHHHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             ecccccchhcccccceEEEEEecccC--cccchhHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHH
Confidence            99988888888999999999999875  444444566666655  79999999999997754321110   000000000


Q ss_pred             -----HHHHH----HHHHH-------------cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        141 -----PEEGR----AMAQK-------------INAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       141 -----~~~~~----~~~~~-------------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                           .....    .+...             ....+++++||++|.|++++++.|.....+.
T Consensus       157 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                 00000    11110             1225789999999999999999988776554

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=6.7e-26  Score=152.87  Aligned_cols=160  Identities=18%  Similarity=0.114  Sum_probs=104.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-------ccccCCCCCE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-------RPLSYPDTDV   79 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~~   79 (192)
                      +|+++|.+|||||||+|+|++...........+............+..+.+|||||.......       ....+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            599999999999999999998765443333333333333344445567899999995432211       1123568899


Q ss_pred             EEEEEECCChh--hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754         80 ILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL  157 (192)
Q Consensus        80 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
                      +++++|.....  ++... ..|+........++|+++|+||+|+.....              .....+.....+ .+++
T Consensus        83 ~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--------------~~~~~~~~~~~~-~~~~  146 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEEA--------------VKALADALAREG-LAVL  146 (180)
T ss_dssp             EEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHHH--------------HHHHHHHHHTTT-SCEE
T ss_pred             hhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHHH--------------HHHHHHHHHhcC-CeEE
Confidence            99999986632  22222 123332222223689999999999866321              112222223333 6999


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        158 ECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ++||++|+|++++++.|.+.+....
T Consensus       147 ~iSA~tg~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         147 PVSALTGAGLPALKEALHALVRSTP  171 (180)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhhcC
Confidence            9999999999999999988886543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=4.2e-26  Score=152.63  Aligned_cols=157  Identities=18%  Similarity=0.113  Sum_probs=100.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc---------ccccccCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD---------RLRPLSYPDT   77 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~~   77 (192)
                      .|+++|++|||||||+++|++............+.......+......+.+||++|.....         ......+..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            5899999999999999999987654333222222222222344445678999999943322         1222345689


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL  157 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
                      |+++++.+.++....  ....+...++..  ++|+++|+||+|+.....              .+...++.+ .+..+++
T Consensus        82 d~i~~~~~~~~~~~~--~~~~~~~~l~~~--~~pviiv~NK~Dl~~~~~--------------~~~~~~~~~-~~~~~~i  142 (171)
T d1mkya1          82 DLVLFVVDGKRGITK--EDESLADFLRKS--TVDTILVANKAENLREFE--------------REVKPELYS-LGFGEPI  142 (171)
T ss_dssp             SEEEEEEETTTCCCH--HHHHHHHHHHHH--TCCEEEEEESCCSHHHHH--------------HHTHHHHGG-GSSCSCE
T ss_pred             cEEEEeecccccccc--cccccccccccc--cccccccchhhhhhhhhh--------------hHHHHHHHh-cCCCCeE
Confidence            999999998765332  334566666665  789999999999864211              111122222 2334779


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        158 ECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ++||++|.|+++++++|.+.+.++.
T Consensus       143 ~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         143 PVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999999886654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.93  E-value=5.4e-26  Score=153.72  Aligned_cols=171  Identities=19%  Similarity=0.250  Sum_probs=111.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   82 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   82 (192)
                      .++.||+++|++|||||||+++|.+..+.... ++.... ...+...  +..+..||++++..+...+....+..+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT-SEELTIA--GMTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEET--TEEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccc-eeEEEec--ccccccccccchhhhhhHHhhhhcccceeee
Confidence            46899999999999999999999998876543 222222 2223333  3568899999999999999999999999999


Q ss_pred             EEECCChhhhhchhhhhHHHHh-hhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH---HHHHHHHcCCceEEE
Q psy14754         83 CFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE---GRAMAQKINAFAYLE  158 (192)
Q Consensus        83 v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  158 (192)
                      ++|.++...+......+..... ....+.|+++++||.|+......................   ........ .+++++
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  165 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNAR-PLEVFM  165 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC-CEEEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcC-CCEEEE
Confidence            9999998877776554444443 334689999999999987654432211111111110000   00001111 257999


Q ss_pred             eccCCcCCHHHHHHHHHHHH
Q psy14754        159 CSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       159 ~Sa~~~~gi~~~~~~i~~~~  178 (192)
                      +||++|+|++|+|+||.+++
T Consensus       166 ~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         166 CSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHTTC
T ss_pred             EeCCCCCCHHHHHHHHHHhh
Confidence            99999999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.9e-25  Score=149.28  Aligned_cols=159  Identities=18%  Similarity=0.126  Sum_probs=100.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcc--cCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc------------
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL------------   69 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------------   69 (192)
                      ..+||+++|++|+|||||+|+|++.......  ..++.......+..++  ..+.++|+||.......            
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            4699999999999999999999987643221  1222222222333443  46789999996433222            


Q ss_pred             ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HHH
Q psy14754         70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AMA  148 (192)
Q Consensus        70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  148 (192)
                      ....++.+|++++|+|+..+.  ......+...+...  +.|+|+|+||+|+.....            ....+.. .+.
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~--~~~~~~~~~~~~~~--~~~~i~v~nK~D~~~~~~------------~~~~~~~~~~~  148 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGI--TRQDQRMAGLMERR--GRASVVVFNKWDLVVHRE------------KRYDEFTKLFR  148 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCC--CHHHHHHHHHHHHT--TCEEEEEEECGGGSTTGG------------GCHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEeecccccc--hhhHHHHHHHHHHc--CCceeeeccchhhhcchh------------hhhhhHHHHHH
Confidence            122345789999999998653  23323555555554  789999999999876432            1111211 222


Q ss_pred             H---HcCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        149 Q---KINAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       149 ~---~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      +   ..+..+++++||++|.|+++|++.|.+.+..
T Consensus       149 ~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         149 EKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             HHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            2   2334589999999999999999999776543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=3.7e-25  Score=146.40  Aligned_cols=150  Identities=23%  Similarity=0.213  Sum_probs=97.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc--c-------ccccCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR--L-------RPLSYPD   76 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~-------~~~~~~~   76 (192)
                      +||+++|.+|+|||||+|+|++.........+..+.......+...+..+.+|||||......  .       ....+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            699999999999999999999876544332222222222222233346789999999432111  1       1112457


Q ss_pred             CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754         77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY  156 (192)
Q Consensus        77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (192)
                      +|++++|+|++++...+..  .+...    ....|+++++||.|+.....              .++...  ......++
T Consensus        81 ad~ii~v~d~~~~~~~~~~--~~~~~----~~~~~~i~~~~k~d~~~~~~--------------~~~~~~--~~~~~~~~  138 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDR--KILER----IKNKRYLVVINKVDVVEKIN--------------EEEIKN--KLGTDRHM  138 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHH--HHHHH----HTTSSEEEEEEECSSCCCCC--------------HHHHHH--HHTCSTTE
T ss_pred             CCEEEEEEeCCCCcchhhh--hhhhh----cccccceeeeeeccccchhh--------------hHHHHH--HhCCCCcE
Confidence            9999999999987543322  22222    23689999999999976322              222211  11223589


Q ss_pred             EEeccCCcCCHHHHHHHHHHH
Q psy14754        157 LECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       157 ~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      +++||++|+|+++|+++|.+.
T Consensus       139 ~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         139 VKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEEGGGTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            999999999999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.3e-25  Score=152.54  Aligned_cols=173  Identities=20%  Similarity=0.218  Sum_probs=108.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      +.+||+++|++|||||||++++.   +...+.||.+-..   ..++.....+.+||++|++.++..|...++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~---~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE---EEEEETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE---EEEeeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999993   3344455554322   23444567899999999999999999999999999999


Q ss_pred             EECCChhhhhc----------hhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhh----hccCCCCCHHHHHHHH
Q psy14754         84 FSIDSPDSLEN----------IPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELN----KMKQEPVKPEEGRAMA  148 (192)
Q Consensus        84 ~d~~~~~~~~~----------~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  148 (192)
                      +|.++..++..          ....|...+.. ...+.|+++++||.|+...........    +........+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99998654422          11122233332 345899999999999865322211111    1111112223333322


Q ss_pred             HH-c---------CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        149 QK-I---------NAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       149 ~~-~---------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      .. +         ..+.++++||+++.||+++|+.+.+.+...+
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            21 1         1134567999999999999999988876543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=4.9e-24  Score=144.01  Aligned_cols=152  Identities=15%  Similarity=0.180  Sum_probs=97.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc---------------cccc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD---------------RLRP   71 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------------~~~~   71 (192)
                      .|+++|++|+|||||+|+|++........+.++. ....+...    .+.+|||||.....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~-~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEee-cccccccc----cceecccCCceeccccccccccccchhhhhhhh
Confidence            5899999999999999999987765443333332 22222222    36789999942211               1112


Q ss_pred             ccCCCCCEEEEEEECCChhh---------hhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHH
Q psy14754         72 LSYPDTDVILMCFSIDSPDS---------LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPE  142 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  142 (192)
                      ..++.+|++++|+|+.....         .......+...+...  +.|+++|+||+|+..+...               
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~~---------------  139 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQE---------------  139 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHHH---------------
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHHH---------------
Confidence            34567899999999876421         111112334444443  7999999999998753221               


Q ss_pred             HHHHHHHHcC------CceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        143 EGRAMAQKIN------AFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       143 ~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                      ....+.+.+.      ...++++||++|+|+++++++|.+.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         140 VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            1111111111      1357899999999999999999988765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=1.9e-24  Score=146.22  Aligned_cols=159  Identities=18%  Similarity=0.162  Sum_probs=99.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc----cc---ccCCCCCE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL----RP---LSYPDTDV   79 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----~~---~~~~~~~~   79 (192)
                      +|+++|++|||||||+|+|++........++++............+..+.+|||||.......    ..   ..+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            699999999999999999998765433333333332222222223346899999995321111    11   12345788


Q ss_pred             EEEEEECCChhhhhchhhh-----hHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc-CC
Q psy14754         80 ILMCFSIDSPDSLENIPEK-----WTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI-NA  153 (192)
Q Consensus        80 ~i~v~d~~~~~~~~~~~~~-----~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (192)
                      ++++++....+........     +.........++|+++|+||+|+....                .....+.+.+ ..
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----------------~~~~~~~~~~~~~  146 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----------------ENLEAFKEKLTDD  146 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----------------HHHHHHHHHCCSC
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----------------HHHHHHHHHhccC
Confidence            8888877654333322111     111111223478999999999986521                1223333333 23


Q ss_pred             ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        154 FAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      .+++.+||++|.|++++++.|.+.+.+.
T Consensus       147 ~~v~~iSA~~g~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         147 YPVFPISAVTREGLRELLFEVANQLENT  174 (185)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence            6899999999999999999999988553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.89  E-value=5.8e-24  Score=144.94  Aligned_cols=163  Identities=11%  Similarity=0.060  Sum_probs=104.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCccc---Ccee-----eeeeEE-----------------EEECCeEEEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV---PTVF-----ENYVAD-----------------IEVDSKQVELALW   58 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---~~~~-----~~~~~~-----------------~~~~~~~~~~~l~   58 (192)
                      ..++|+++|+.++|||||+++|++........   ...+     ......                 .........+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            36899999999999999999998743222110   0000     000000                 0112234678999


Q ss_pred             eCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCC
Q psy14754         59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEP  138 (192)
Q Consensus        59 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  138 (192)
                      |+||+.+|.......+..+|++++++|+.++...+... ..+..+... ...++++++||+|+.+.......        
T Consensus        84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~-e~~~~~~~~-~~~~iiv~inK~D~~d~~~~~~~--------  153 (195)
T d1kk1a3          84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR-EHLMALQII-GQKNIIIAQNKIELVDKEKALEN--------  153 (195)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHH-HHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHH--------
T ss_pred             ccchhhhhhHHhhcccccccccccccchhhhhhhhhhH-HHHHHHHHh-cCccceeeeecccchhhHHHHHH--------
Confidence            99999999888888888999999999998863222222 223333332 13457889999998763221111        


Q ss_pred             CCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        139 VKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       139 ~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                        .....++....  ..+|++++||++|+|+++|++.|.+.+
T Consensus       154 --~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         154 --YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             --HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             --HHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence              12222333322  236899999999999999999988754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.89  E-value=2.8e-23  Score=140.85  Aligned_cols=161  Identities=16%  Similarity=0.142  Sum_probs=107.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC----------------CCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ----------------FPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      .++|+++|+.++|||||+++|++..                ......... +.......+......+.++|+||+.+|..
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgi-Ti~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI-TINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTE-EEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCc-cCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            5899999999999999999997510                011111111 11222334455567899999999999988


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA  148 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (192)
                      .....+..+|++++|+|+.++-  +......+..+... ...|+||++||+|+..+....+..         ..+.+.+.
T Consensus        82 ~~~~~~~~aD~allVVda~~G~--~~QT~~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~~~~i---------~~~i~~~l  149 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGP--MPQTREHLLLARQI-GVEHVVVYVNKADAVQDSEMVELV---------ELEIRELL  149 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCS--CHHHHHHHHHHHHT-TCCCEEEEEECGGGCSCHHHHHHH---------HHHHHHHH
T ss_pred             HHHHHHhhcCeEEEEEEcCCCC--chhHHHHHHHHHHh-cCCcEEEEEecccccccHHHHHHH---------HHHHHHHH
Confidence            8888889999999999999863  22222334443332 146899999999987643221111         11233333


Q ss_pred             HHcC----CceEEEeccCCc----------CCHHHHHHHHHHHH
Q psy14754        149 QKIN----AFAYLECSAKSK----------EGVREVFETATRAA  178 (192)
Q Consensus       149 ~~~~----~~~~~~~Sa~~~----------~gi~~~~~~i~~~~  178 (192)
                      ..++    .+|++++||++|          .|+.++++.|.+.+
T Consensus       150 ~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            3333    268999999998          58999998887654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.88  E-value=4.4e-23  Score=141.55  Aligned_cols=165  Identities=12%  Similarity=0.085  Sum_probs=104.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccC--------ceeeeeeEEE----------------------EECCeEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP--------TVFENYVADI----------------------EVDSKQV   53 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--------~~~~~~~~~~----------------------~~~~~~~   53 (192)
                      ..++|+++|+.++|||||+++|++.........        ..........                      .......
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            358999999999999999999986332111000        0000000000                      0012235


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhh
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNK  133 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  133 (192)
                      .+.++|+|||.+|.......+..+|++|+|+|+.++-. +......+..+... .-.|+||++||+|+.........   
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~-~~~t~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~~~~---  161 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP-QPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQ---  161 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSS-CHHHHHHHHHHHHT-TCCCEEEEEECGGGSCHHHHHHH---
T ss_pred             EEEEeccchHHHHHhhhhcceecccccccccccccccc-chhHHHHHHHHHHc-CCceeeeccccCCCccchHHHHH---
Confidence            68999999999998888888889999999999987521 11111223333322 23589999999999764322111   


Q ss_pred             ccCCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        134 MKQEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                             ......+....  ..+|++++||++|.||+++++.|...+..
T Consensus       162 -------~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         162 -------YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             -------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             -------HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence                   11122222221  23689999999999999999999887653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=6.6e-23  Score=139.69  Aligned_cols=153  Identities=12%  Similarity=0.129  Sum_probs=93.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc-------------cccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYVADIEVDSKQVELALWDTAGQEDYD-------------RLRP   71 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------------~~~~   71 (192)
                      .+|+|+|++|||||||+|+|++...... ......+..........   .+.+.|++|.....             ....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            3899999999999999999998653221 11111111122222222   34456766632211             1122


Q ss_pred             ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH-
Q psy14754         72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK-  150 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  150 (192)
                      ..+..++++++++|+.++  +......++..++..  ++|+++|+||+|+......             .+....+.+. 
T Consensus       101 ~~~~~~~~vi~viD~~~~--~~~~~~~~~~~l~~~--~~piivv~NK~D~~~~~~~-------------~~~~~~~~~~l  163 (195)
T d1svia_         101 TTREELKAVVQIVDLRHA--PSNDDVQMYEFLKYY--GIPVIVIATKADKIPKGKW-------------DKHAKVVRQTL  163 (195)
T ss_dssp             HHCTTEEEEEEEEETTSC--CCHHHHHHHHHHHHT--TCCEEEEEECGGGSCGGGH-------------HHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhcccc--ccccccccccccccc--cCcceechhhccccCHHHH-------------HHHHHHHHHHh
Confidence            344577999999999865  333334666666665  7899999999998653221             1122222222 


Q ss_pred             --cCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754        151 --INAFAYLECSAKSKEGVREVFETATRAA  178 (192)
Q Consensus       151 --~~~~~~~~~Sa~~~~gi~~~~~~i~~~~  178 (192)
                        ....+++++||++|.|+++++++|.+.+
T Consensus       164 ~~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         164 NIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence              2335899999999999999999998875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6.2e-23  Score=141.08  Aligned_cols=120  Identities=14%  Similarity=0.199  Sum_probs=86.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc-ccccccCCCCCEEEEEEE
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD-RLRPLSYPDTDVILMCFS   85 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~~~~i~v~d   85 (192)
                      +|+++|++|||||||+++|+++.+.... ++.+.............+.+.+||++|++.++ ..+..+++.++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6999999999999999999998887653 33333332222224566789999999998775 456677789999999999


Q ss_pred             CCChhhh-hchhhhhHHHHhh---hCCCCcEEEEeecccccCCccc
Q psy14754         86 IDSPDSL-ENIPEKWTPEVKH---FCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                      +++..+. ....+.+...+..   ...+.|++|++||+|+..+.+.
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~  126 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA  126 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCH
Confidence            9997653 3443344444332   2246899999999999875543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=2.3e-22  Score=139.47  Aligned_cols=172  Identities=16%  Similarity=0.223  Sum_probs=114.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   83 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   83 (192)
                      ...||+++|+.|||||||++++..+.+.    ||.+-. ...  +..+++.+.+||++|+..++..|..+++.+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~----pTiG~~-~~~--~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIF-ETK--FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC----CCCSCE-EEE--EEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC----CCCCeE-EEE--EEECcEEEEEEecCccceeccchhhhcccccceEEE
Confidence            4689999999999999999999766543    333311 222  333457899999999999999999999999999999


Q ss_pred             EECCChhhhh----------chhhhhHHHHhh-hCCCCcEEEEeecccccCCccch-----hh-hhhccC---------C
Q psy14754         84 FSIDSPDSLE----------NIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTI-----KE-LNKMKQ---------E  137 (192)
Q Consensus        84 ~d~~~~~~~~----------~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~-----~~-~~~~~~---------~  137 (192)
                      +|.++.+.+.          +....|...+.. ...+.|++|++||+|+.......     .. ..+...         .
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            9998764332          222234444433 34689999999999997543211     10 001000         0


Q ss_pred             CC---CHHHHHH-----HHHHc-------CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754        138 PV---KPEEGRA-----MAQKI-------NAFAYLECSAKSKEGVREVFETATRAALQVK  182 (192)
Q Consensus       138 ~~---~~~~~~~-----~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~  182 (192)
                      ..   ....+..     +.+..       ..+..+++||++..+|+.+|+.+.+.++...
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence            00   1122222     22111       1134568999999999999999888777654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6.2e-22  Score=132.99  Aligned_cols=158  Identities=15%  Similarity=0.093  Sum_probs=102.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc---------ccccccccCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED---------YDRLRPLSYPDT   77 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~~~   77 (192)
                      .|+++|.+|+|||||+|+|++........+..+...............+..+|++|...         +..........+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV   86 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence            58999999999999999999877544333333332222212222333567788888432         122333344567


Q ss_pred             CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754         78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL  157 (192)
Q Consensus        78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
                      ++++++.|..+......   .+...+..  ...|.++++||.|...+..            ........+...++..+++
T Consensus        87 ~~~l~~~d~~~~~~~~~---~~~~~l~~--~~~~~i~v~~k~d~~~~~~------------~~~~~~~~~~~~~~~~~~~  149 (179)
T d1egaa1          87 ELVIFVVEGTRWTPDDE---MVLNKLRE--GKAPVILAVNKVDNVQEKA------------DLLPHLQFLASQMNFLDIV  149 (179)
T ss_dssp             EEEEEEEETTCCCHHHH---HHHHHHHS--SSSCEEEEEESTTTCCCHH------------HHHHHHHHHHTTSCCSEEE
T ss_pred             ceeEEEEecCccchhHH---HHHHHhhh--ccCceeeeeeeeeccchhh------------hhhhHhhhhhhhcCCCCEE
Confidence            88888888776432222   22233332  2689999999999876422            1123344555666767999


Q ss_pred             EeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        158 ECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       158 ~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      ++||++|.|+++|++.|.+.+.+.
T Consensus       150 ~vSA~~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         150 PISAETGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             ECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             EEeCcCCCCHHHHHHHHHHhCCCC
Confidence            999999999999999998887554

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=6.8e-21  Score=134.59  Aligned_cols=119  Identities=18%  Similarity=0.094  Sum_probs=83.2

Q ss_pred             cce-eEEEEcCCCCchhHHHHHHhhCC--CCCc---ccCc------------eeeeeeEEEEECCeEEEEEEEeCCCCCc
Q psy14754          4 IRK-KLVIVGDGACGKTCLLIVFSKDQ--FPEV---YVPT------------VFENYVADIEVDSKQVELALWDTAGQED   65 (192)
Q Consensus         4 ~~~-~i~v~G~~~~GKSsli~~l~~~~--~~~~---~~~~------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~   65 (192)
                      .++ +|+++|+.++|||||+.+++...  ....   ...+            ..+.......+...+..+.++||||+.+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence            344 69999999999999999987421  1100   0000            0011111223344556899999999999


Q ss_pred             ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754         66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  126 (192)
                      |.......++.+|++|+|+|+.++  .+...+..+....++  +.|.++++||+|....+.
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~G--v~~~T~~~w~~a~~~--~lP~i~fINKmDr~~ad~  140 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQG--VEPQSETVWRQAEKY--KVPRIAFANKMDKTGADL  140 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTS--SCHHHHHHHHHHHTT--TCCEEEEEECTTSTTCCH
T ss_pred             hHHHHHHHHHhhhheEEeccccCC--cchhHHHHHHHHHHc--CCCEEEEEeccccccccc
Confidence            999999999999999999999987  333334455555555  899999999999976443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=8.1e-22  Score=134.69  Aligned_cols=116  Identities=18%  Similarity=0.210  Sum_probs=81.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC--------CCCCcc--c--C----ceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD--------QFPEVY--V--P----TVFENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~--------~~~~~~--~--~----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      +++|+++|++++|||||+++|+..        ......  .  +    ...+.......+...+..+.++||||+.+|..
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence            589999999999999999999742        111100  0  0    01112222334455566889999999999998


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCC
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRND  124 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  124 (192)
                      .....+..+|++|+|+|+.++-..+.  ...+..+...  +.| ++|++||+|+.+.
T Consensus        83 ~~~~~~~~aD~avlVvda~~Gv~~qt--~~~~~~~~~~--gi~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDD  135 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCC
T ss_pred             HHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEecccCCC
Confidence            88888899999999999988743333  3444444444  666 7788999998653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.83  E-value=2.1e-20  Score=128.86  Aligned_cols=153  Identities=18%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC--CCC--------cccC----------------------ceeeeeeEEEEECCe
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPE--------VYVP----------------------TVFENYVADIEVDSK   51 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~--------~~~~----------------------~~~~~~~~~~~~~~~   51 (192)
                      ..+||+++|+.++|||||+.+|+...  ...        ....                      ...+.......+...
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~   87 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA   87 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEecc
Confidence            46899999999999999999997421  100        0000                      000111111223334


Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhh
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKE  130 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~  130 (192)
                      ...+.++|+|||.+|.......+..+|++++|+|+.++-.-+.  ...+..+...  ++| +|+++||+|+.+.+.....
T Consensus        88 ~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt--~e~~~~~~~~--gv~~iiv~vNK~D~~~~~~~~~~  163 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE  163 (222)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch--HHHHHHHHHc--CCCEEEEEEEccccccccceehh
Confidence            5678999999999999888888899999999999988632222  2333333333  544 8899999999764321100


Q ss_pred             hhhccCCCCCHHHHHHHHHHc----CCceEEEeccCCcCCHH
Q psy14754        131 LNKMKQEPVKPEEGRAMAQKI----NAFAYLECSAKSKEGVR  168 (192)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~  168 (192)
                              ....+...+.+..    ..++++++||++|+|+.
T Consensus       164 --------~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         164 --------SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             --------HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             --------hhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence                    0112233444444    22578999999999984

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.81  E-value=8.3e-20  Score=128.70  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=78.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcc-----cC------------ceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-----VP------------TVFENYVADIEVDSKQVELALWDTAGQEDYDR   68 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   68 (192)
                      .+|+++|+.++|||||+.+|+...-....     ..            ...+.......+...+..+.++||||+.+|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            36999999999999999998642211000     00            00011111122333445789999999999999


Q ss_pred             cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      .....++.+|++|+|+|+.++-..+.  +..+......  +.|.++++||+|..
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t--~~~~~~~~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             hhhhhhcccCceEEEeeccCCccchh--HHHHHhhhhc--cccccccccccccc
Confidence            98889999999999999998743333  3444455544  79999999999974

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.80  E-value=1.2e-20  Score=132.10  Aligned_cols=161  Identities=13%  Similarity=0.123  Sum_probs=86.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC--CCCcc-------------c---------Cc------eeeeeeEEEEECCeEE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPEVY-------------V---------PT------VFENYVADIEVDSKQV   53 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~-------------~---------~~------~~~~~~~~~~~~~~~~   53 (192)
                      ..++|+++|+.++|||||+.+|+...  .....             .         ..      ..........+.....
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            46789999999999999999985311  10000             0         00      0000000012223345


Q ss_pred             EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhh---h--hchhhhhHHHHhhhCCCC-cEEEEeecccccCCccc
Q psy14754         54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---L--ENIPEKWTPEVKHFCPNV-PIILVGNKKDLRNDPNT  127 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~--~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~  127 (192)
                      .+.+.|+|||..|..........+|++++|+|+.++..   +  .......+..+...  ++ ++++++||+|+......
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iNKmD~~~~~~~  180 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQWS  180 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCSSC
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEEcCCCCccchh
Confidence            78999999999999999999999999999999987521   1  11111222222222  45 48899999999764433


Q ss_pred             hhhhhhccCCCCCHHHHHHHHHHc------CCceEEEeccCCcCCHHHHHH
Q psy14754        128 IKELNKMKQEPVKPEEGRAMAQKI------NAFAYLECSAKSKEGVREVFE  172 (192)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~~~~~  172 (192)
                      ...++++      ..+...+....      ..++++++||++|+||.++++
T Consensus       181 e~~~~ei------~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         181 EERYKEC------VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             HHHHHHH------HHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             HHHHHHH------HHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            2222211      01111221111      125899999999999977543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=4.5e-20  Score=124.44  Aligned_cols=162  Identities=12%  Similarity=0.066  Sum_probs=83.7

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccccc----------c
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRL----------R   70 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~   70 (192)
                      +...++|+++|.+|+|||||+|+|++...........+... ............+..++.++.......          .
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            45679999999999999999999998776544333333222 222222222222333333221111110          1


Q ss_pred             cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH-HHH
Q psy14754         71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MAQ  149 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  149 (192)
                      .........++.+.+.....  ......+.......  ..++++++||+|+..........          ....+ +..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~v~~k~D~~~~~~~~~~~----------~~~~~~l~~  158 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAVDS--NIAVLVLLTKADKLASGARKAQL----------NMVREAVLA  158 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHH----------HHHHHHHGG
T ss_pred             hhhhhheeEEEEeecccccc--hhHHHHHHHHhhhc--cccccchhhhhhccCHHHHHHHH----------HHHHHHHHh
Confidence            11122344555555555432  22222344444443  78999999999987632211111          11122 222


Q ss_pred             HcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754        150 KINAFAYLECSAKSKEGVREVFETATRA  177 (192)
Q Consensus       150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~  177 (192)
                      ..+..+++++||++|.|+++|++.|...
T Consensus       159 ~~~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         159 FNGDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             GCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hCCCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            2334689999999999999999988654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=4.2e-19  Score=123.63  Aligned_cols=155  Identities=12%  Similarity=0.113  Sum_probs=97.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC--CCCC-----------------------------cccCceeeeeeEEEEECCeE
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD--QFPE-----------------------------VYVPTVFENYVADIEVDSKQ   52 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   52 (192)
                      ..++|+++|+.++|||||+.+|+..  ....                             ......+ .......+...+
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiT-i~~~~~~~~~~~   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT-IDIALWKFETPK   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCC-CSCSCEEEECSS
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceec-cccceeEeccCC
Confidence            4689999999999999999998631  1100                             0001111 111122344455


Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhh-----hhchhhhhHHHHhhhCCCCc-EEEEeecccccCCcc
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS-----LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPN  126 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~  126 (192)
                      ..+.++|+|||.+|.......+..+|++|+|+|+.+...     .+......+......  ++| +||++||+|+.+.+.
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~--gv~~iiv~iNKmD~~~~d~  161 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAVNKMDSVKWDE  161 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEEECGGGGTTCH
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc--CCCeEEEEEECCCCCCCCH
Confidence            789999999999999988889999999999999987521     111112222333333  565 788999999877432


Q ss_pred             chhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy14754        127 TIKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~  169 (192)
                      ..  +.      ....+...+....+    .++++++|+.+|.|+.+
T Consensus       162 ~~--~~------~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         162 SR--FQ------EIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HH--HH------HHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HH--HH------HHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            10  00      00122333333332    25789999999998743

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.4e-19  Score=124.23  Aligned_cols=119  Identities=17%  Similarity=0.170  Sum_probs=81.5

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccccc----CCCCC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLS----YPDTD   78 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~~~~   78 (192)
                      +++.+|+++|++|||||||+|+|.+..+...    ++ .......+...+..+.+||+||+..+...+...    ...++
T Consensus         1 ~~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VV-SQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CC-CSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EE-ecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            4678999999999999999999999876432    21 222223455566778999999988766554433    34568


Q ss_pred             EEEEEEECCC-hhhhhchhhhh---HHHHhh-hCCCCcEEEEeecccccCCcc
Q psy14754         79 VILMCFSIDS-PDSLENIPEKW---TPEVKH-FCPNVPIILVGNKKDLRNDPN  126 (192)
Q Consensus        79 ~~i~v~d~~~-~~~~~~~~~~~---~~~~~~-~~~~~p~ivv~nK~D~~~~~~  126 (192)
                      .+++++|+.+ ..++....+.+   ...+.. ...+.|+++++||+|+.....
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            8999999775 44444443222   222222 235899999999999976543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=9.6e-19  Score=121.13  Aligned_cols=158  Identities=15%  Similarity=0.183  Sum_probs=96.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC--CCCc----------------------------ccCceeeeeeEEEEECCeEEE
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ--FPEV----------------------------YVPTVFENYVADIEVDSKQVE   54 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~   54 (192)
                      .++|+++|+.++|||||+.+|+...  ....                            ......+.......++.....
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            6899999999999999999986411  0000                            000000111111233445567


Q ss_pred             EEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhh-----hchhhhhHHHHhhhCCCCcEEEEeecccccCCccchh
Q psy14754         55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL-----ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIK  129 (192)
Q Consensus        55 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  129 (192)
                      +.++|||||.+|.......+..+|++|+|+|+.++-.-     .......+.... .....++|+++||+|+........
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~~~~~iIv~iNK~D~~~~~~~~~  161 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMGLDQLIVAVNKMDLTEPPYDEK  161 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTTCTTCEEEEECGGGSSSTTCHH
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-HhCCCceEEEEEcccCCCccccHH
Confidence            99999999999999999999999999999999986321     111111111111 122457899999999976443332


Q ss_pred             hhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy14754        130 ELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE  169 (192)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~  169 (192)
                      .++..      ..+...+...++    .++++++||..|.|+.+
T Consensus       162 ~~~~v------~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         162 RYKEI------VDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHH------HHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHH------HHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            22211      122333333332    25789999999999853

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=4e-18  Score=127.21  Aligned_cols=168  Identities=11%  Similarity=0.099  Sum_probs=97.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCccc-C---ceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-----ccccC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV-P---TVFENYVADIEVDSKQVELALWDTAGQEDYDRL-----RPLSY   74 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~~   74 (192)
                      .+++|+|+|.+|+|||||+|+|.+....+... +   ..++.....+.. .....+.+|||||.......     ....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            47999999999999999999999855432211 1   111221222222 22234789999995432211     12234


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH----HH-----
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE----GR-----  145 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~-----  145 (192)
                      ..+|++|++.|..    +......+...+.+.  ++|+++|.||+|....+.....     ......+.    .+     
T Consensus       134 ~~~d~~l~~~~~~----~~~~d~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~-----~~~~~~e~~l~~ir~~~~~  202 (400)
T d1tq4a_         134 YEYDFFIIISATR----FKKNDIDIAKAISMM--KKEFYFVRTKVDSDITNEADGE-----PQTFDKEKVLQDIRLNCVN  202 (400)
T ss_dssp             GGCSEEEEEESSC----CCHHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTC-----CTTCCHHHHHHHHHHHHHH
T ss_pred             hcceEEEEecCCC----CCHHHHHHHHHHHHc--CCCEEEEEeCcccccchhhhcc-----cccccHHHHHHHHHHHHHH
Confidence            5678888877643    333333555666665  7999999999997532221110     11111111    11     


Q ss_pred             HHHHH-cCCceEEEeccCC--cCCHHHHHHHHHHHHhhhcc
Q psy14754        146 AMAQK-INAFAYLECSAKS--KEGVREVFETATRAALQVKK  183 (192)
Q Consensus       146 ~~~~~-~~~~~~~~~Sa~~--~~gi~~~~~~i~~~~~~~~~  183 (192)
                      .+... ....++|.+|..+  ..|+.++.+.+.+.+.+.++
T Consensus       203 ~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~  243 (400)
T d1tq4a_         203 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  243 (400)
T ss_dssp             HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             HHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHHH
Confidence            11111 2224678888764  45899999999888776543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3e-16  Score=113.88  Aligned_cols=116  Identities=13%  Similarity=0.107  Sum_probs=79.5

Q ss_pred             cce-eEEEEcCCCCchhHHHHHHhhC--CCCCc------c--------cCcee-eeeeEEEEE--------------CCe
Q psy14754          4 IRK-KLVIVGDGACGKTCLLIVFSKD--QFPEV------Y--------VPTVF-ENYVADIEV--------------DSK   51 (192)
Q Consensus         4 ~~~-~i~v~G~~~~GKSsli~~l~~~--~~~~~------~--------~~~~~-~~~~~~~~~--------------~~~   51 (192)
                      ..+ +|+|+|+.++|||||+.+|+..  .....      +        ....+ ......+..              +..
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            456 4999999999999999998731  11100      0        00000 000111111              335


Q ss_pred             EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      .+.+.++|||||.+|.......++.+|++++|+|+.++-..+..  ..+......  +.|+++++||+|...
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~--~~~~~a~~~--~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE--TVLRQALGE--RIKPVVVINKVDRAL  162 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH--HHHHHHHHT--TCEEEEEEECHHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH--HHHHHHHHc--CCCeEEEEECccccc
Confidence            67899999999999999999999999999999999987444333  344444433  799999999999854

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=6.2e-16  Score=108.88  Aligned_cols=121  Identities=12%  Similarity=0.109  Sum_probs=74.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc-------c--ccC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR-------P--LSY   74 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~--~~~   74 (192)
                      .+++|+++|.+|+|||||+|++++...........++...........+..+.++||||..+.....       .  ...
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~  110 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD  110 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhc
Confidence            5799999999999999999999997755443322333222222223334579999999953321110       0  122


Q ss_pred             CCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-C--CCcEEEEeecccccCCc
Q psy14754         75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-P--NVPIILVGNKKDLRNDP  125 (192)
Q Consensus        75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~D~~~~~  125 (192)
                      ...+++++|++++... +.......+..+...+ +  -.+++||+||.|...+.
T Consensus       111 ~~~~~il~v~~~~~~r-~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         111 KTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             CEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             CCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            3578899998876531 2222223333333222 1  35899999999987643

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.55  E-value=1.9e-15  Score=105.55  Aligned_cols=124  Identities=16%  Similarity=0.085  Sum_probs=69.5

Q ss_pred             EEEEEeCCCCCcccccccc---c--CCCCCEEEEEEECCCh---hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754         54 ELALWDTAGQEDYDRLRPL---S--YPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP  125 (192)
Q Consensus        54 ~~~l~D~~g~~~~~~~~~~---~--~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  125 (192)
                      .+.+.|+||+..+......   .  ....+.+++++|+...   .................  ..|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccHH
Confidence            5889999998664322111   1  1245688999987543   22222110111111122  78999999999998754


Q ss_pred             cchhhhhh----------ccCCC-CCHHHHHH----HHHHcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754        126 NTIKELNK----------MKQEP-VKPEEGRA----MAQKINAFAYLECSAKSKEGVREVFETATRAAL  179 (192)
Q Consensus       126 ~~~~~~~~----------~~~~~-~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~  179 (192)
                      ........          ..... ........    ..+..+.++++++||++|+|+++++..|.++..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            33221100          00000 00011111    122334578999999999999999999988754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1e-13  Score=100.16  Aligned_cols=104  Identities=19%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             EEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhc
Q psy14754         55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKM  134 (192)
Q Consensus        55 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  134 (192)
                      +.+++|.|.-.-.   ......+|.+++|.+....+..+......++        .+-++|+||+|+.........    
T Consensus       149 ~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e--------~aDi~VvNKaD~~~~~~~~~~----  213 (327)
T d2p67a1         149 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLME--------VADLIVINKDDGDNHTNVAIA----  213 (327)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHH--------HCSEEEECCCCTTCHHHHHHH----
T ss_pred             eEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhc--------cccEEEEEeecccchHHHHHH----
Confidence            4555555531111   1234578999999988888777777554443        244899999998663221110    


Q ss_pred             cCCCCCHHHHHHHHH-------HcCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        135 KQEPVKPEEGRAMAQ-------KINAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       135 ~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                            ..+......       .+. .|++.+||++|+|++++++.|.++...
T Consensus       214 ------~~~~~~al~~~~~~~~~w~-p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         214 ------RHMYESALHILRRKYDEWQ-PRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             ------HHHHHHHHHHSCCSBTTBC-CEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHhhhcccCCCCCc-ceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence                  011111111       122 479999999999999999999876543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.45  E-value=1.6e-13  Score=98.98  Aligned_cols=105  Identities=13%  Similarity=0.128  Sum_probs=64.0

Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhh
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELN  132 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  132 (192)
                      +.+.+++|.|.-.-..   .....+|..++|.....++..+..+...+.        .+-++|+||+|+.+.......  
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE--------~aDi~vvNKaD~~~~~~~~~~--  210 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFE--------LADMIAVNKADDGDGERRASA--  210 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHH--------HCSEEEEECCSTTCCHHHHHH--
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhhHhh--------hhheeeEeccccccchHHHHH--
Confidence            4567888887432221   233458999999999998888776544443        344999999998764321111  


Q ss_pred             hccCCCCCHHHHHHHHHHc---------CCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754        133 KMKQEPVKPEEGRAMAQKI---------NAFAYLECSAKSKEGVREVFETATRAALQ  180 (192)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~  180 (192)
                                ....+...+         ...|++.+||++++|+++++++|.++...
T Consensus       211 ----------~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         211 ----------AASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             ----------HHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence                      111111111         12479999999999999999999877543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.27  E-value=1.3e-11  Score=87.46  Aligned_cols=84  Identities=18%  Similarity=0.089  Sum_probs=52.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCe------------E---EEEEEEeCCCCCcc-
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSK------------Q---VELALWDTAGQEDY-   66 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~---~~~~l~D~~g~~~~-   66 (192)
                      +.+||.++|.|+||||||++++++........|+++..... .+.+.+.            .   ..++++|+||.-.- 
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            35799999999999999999999887655444444322211 1112111            1   35899999994332 


Q ss_pred             ------cccccccCCCCCEEEEEEECC
Q psy14754         67 ------DRLRPLSYPDTDVILMCFSID   87 (192)
Q Consensus        67 ------~~~~~~~~~~~~~~i~v~d~~   87 (192)
                            ....-..++.+|+++.|+|+.
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhccceEEEeecc
Confidence                  222234567899999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=1.1e-11  Score=89.61  Aligned_cols=83  Identities=10%  Similarity=0.055  Sum_probs=46.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE-----------------------EECCeEEEEEEEeCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-----------------------EVDSKQVELALWDTAG   62 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~D~~g   62 (192)
                      ++|+++|.||||||||+|+|++........|+++......+                       ........++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999997765544443332111110                       0112446799999999


Q ss_pred             CCc-------ccccccccCCCCCEEEEEEECCC
Q psy14754         63 QED-------YDRLRPLSYPDTDVILMCFSIDS   88 (192)
Q Consensus        63 ~~~-------~~~~~~~~~~~~~~~i~v~d~~~   88 (192)
                      .-.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            422       22333445678999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=3.2e-11  Score=86.35  Aligned_cols=120  Identities=20%  Similarity=0.169  Sum_probs=69.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeeeeEEEEE-----------C-----------------------
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEV-----------D-----------------------   49 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~-----------~-----------------------   49 (192)
                      -.+|+|+|..++|||||+|+|++..+ +....+++.......+..           .                       
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            34799999999999999999999885 333333221111111000           0                       


Q ss_pred             ------C--e--------EEEEEEEeCCCCCccc-------------ccccccCCCCC-EEEEEEECCChhhhhchhhhh
Q psy14754         50 ------S--K--------QVELALWDTAGQEDYD-------------RLRPLSYPDTD-VILMCFSIDSPDSLENIPEKW   99 (192)
Q Consensus        50 ------~--~--------~~~~~l~D~~g~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~   99 (192)
                            .  -        ...+.++|+||.....             .....++...+ ++++|.++....+.... ..+
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH-HHH
Confidence                  0  0        0137899999953321             11222344555 55566666554333332 244


Q ss_pred             HHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754        100 TPEVKHFCPNVPIILVGNKKDLRNDPNT  127 (192)
Q Consensus       100 ~~~~~~~~~~~p~ivv~nK~D~~~~~~~  127 (192)
                      ...+...  ..++++|+||+|...+.+.
T Consensus       185 ~~~~~~~--~~r~i~Vltk~D~~~~~~~  210 (299)
T d2akab1         185 AKEVDPQ--GQRTIGVITKLDLMDEGTD  210 (299)
T ss_dssp             HHHHCTT--CSSEEEEEECGGGSCTTCC
T ss_pred             HHHhCcC--CCceeeEEeccccccchhh
Confidence            4444333  5789999999999875443

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.17  E-value=1.5e-11  Score=88.38  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=23.2

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .+|+|+|..++|||||+|+|++..+
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            4799999999999999999999876

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.05  E-value=1.5e-10  Score=82.66  Aligned_cols=85  Identities=19%  Similarity=0.113  Sum_probs=55.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCCCC-CcccCceeeee-eEEEEECC---------------eEEEEEEEeCCCCCcc
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENY-VADIEVDS---------------KQVELALWDTAGQEDY   66 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~---------------~~~~~~l~D~~g~~~~   66 (192)
                      ..+||+++|.|+||||||+|++++...+ ....|.++... .-.+.+.+               ....+++.|+||...-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            5689999999999999999999987542 22233333221 11122221               1247899999984332


Q ss_pred             cc-------cccccCCCCCEEEEEEECCC
Q psy14754         67 DR-------LRPLSYPDTDVILMCFSIDS   88 (192)
Q Consensus        67 ~~-------~~~~~~~~~~~~i~v~d~~~   88 (192)
                      .+       ..-..++.+|+++.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence            21       22335678999999999866

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=7.4e-10  Score=78.09  Aligned_cols=58  Identities=22%  Similarity=0.243  Sum_probs=36.9

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ   63 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   63 (192)
                      ...++|+|+|.||+|||||+|+|.+.........++.+.....+..+.   .+.++||||-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCC---CeEEecCCCc
Confidence            357899999999999999999999987766554444443333233322   4899999994

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.56  E-value=8.6e-08  Score=64.79  Aligned_cols=86  Identities=19%  Similarity=0.320  Sum_probs=58.1

Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc-C
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI-N  152 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (192)
                      ..+.|.+++|+.+.+|+--....+.++-.....  ++|.+||+||+|+.++..              .+....+...+ .
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~--------------~~~~~~~~~~~~~   71 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDD--------------LRKVRELEEIYSG   71 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHH--------------HHHHHHHHHHHTT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHH--------------HHHHHHhhccccc
Confidence            357899999999887653223334555544444  899999999999976211              11222333322 3


Q ss_pred             CceEEEeccCCcCCHHHHHHHHH
Q psy14754        153 AFAYLECSAKSKEGVREVFETAT  175 (192)
Q Consensus       153 ~~~~~~~Sa~~~~gi~~~~~~i~  175 (192)
                      .++++.+|++++.|++++.+.+.
T Consensus        72 ~~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          72 LYPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             TSCEEECCTTTCTTHHHHHHHHS
T ss_pred             ceeEEEeccccchhHhhHHHHhc
Confidence            36889999999999999988763

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.56  E-value=3.6e-08  Score=66.70  Aligned_cols=59  Identities=19%  Similarity=0.105  Sum_probs=35.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcc-------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-------VPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      -..+++|++|+|||||+|+|.+.....+.       ....+++...-+.+..+   -.++||||...+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            35689999999999999999875432221       11122222333344433   3689999975544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.42  E-value=2e-07  Score=65.37  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754         72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI  151 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (192)
                      ..++.+|++|+|+|+.+|.+..+-  .+    .+...++|.|+|+||+|+.+..             ....+...| ...
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~~--~l----~~~~~~Kp~IlVlNK~DLv~~~-------------~~~~w~~~f-~~~   70 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRNP--MI----EDILKNKPRIMLLNKADKADAA-------------VTQQWKEHF-ENQ   70 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCH--HH----HHHCSSSCEEEEEECGGGSCHH-------------HHHHHHHHH-HTT
T ss_pred             HHHHhCCEEEEEEECCCCCCCCCH--HH----HHHHcCCCeEEEEECccCCchH-------------HHHHHHHHH-Hhc
Confidence            356789999999999988554431  23    2333479999999999997621             111222222 222


Q ss_pred             CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754        152 NAFAYLECSAKSKEGVREVFETATRAALQV  181 (192)
Q Consensus       152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~  181 (192)
                      + .+.+.+|+.++.|..++...+.+.+...
T Consensus        71 ~-~~~i~isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          71 G-IRSLSINSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             T-CCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             C-CccceeecccCCCccccchhhhhhhhhh
Confidence            2 4788999999999988888776665543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.42  E-value=5.9e-08  Score=65.16  Aligned_cols=92  Identities=13%  Similarity=0.046  Sum_probs=51.4

Q ss_pred             EEEEEEeCCCCCcccccc------ccc--CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754         53 VELALWDTAGQEDYDRLR------PLS--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND  124 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~------~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  124 (192)
                      ..+.++||+|...+....      ...  .-..+-.++|++++...  +.. .........   --+--+++||.|... 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~~~~~---~~~~~lI~TKlDet~-  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAY-DLASKFNQA---SKIGTIIITKMDGTA-  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHH-HHHHHHHHH---CTTEEEEEECTTSCS-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc--chH-HHHhhhhcc---cCcceEEEecccCCC-
Confidence            468999999965443211      111  11357788999887652  222 122222222   123457899999654 


Q ss_pred             ccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHH
Q psy14754        125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE  169 (192)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  169 (192)
                                     ..-..-......+ .|+..++.  |+++++
T Consensus       168 ---------------~~G~~l~~~~~~~-lPi~~it~--Gq~v~D  194 (211)
T d1j8yf2         168 ---------------KGGGALSAVAATG-ATIKFIGT--GEKIDE  194 (211)
T ss_dssp             ---------------CHHHHHHHHHTTT-CCEEEEEC--SSSTTC
T ss_pred             ---------------cccHHHHHHHHHC-cCEEEEeC--CCCccc
Confidence                           2344455556666 57776663  655543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.39  E-value=1.1e-07  Score=63.63  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+--|+++|++||||||.+-+|..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345578999999999999977754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=6.3e-08  Score=65.69  Aligned_cols=58  Identities=22%  Similarity=0.190  Sum_probs=32.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCCCCCcc-------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-------VPTVFENYVADIEVDSKQVELALWDTAGQEDYD   67 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   67 (192)
                      -..+++|++|+|||||+|+|.+.....+.       ....+++...-+..++ +   .++||||...+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g---~iiDTPG~r~~~  162 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-G---LVADTPGFSSLE  162 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-E---EEESSCSCSSCC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-C---EEEECCcccccc
Confidence            35689999999999999999985422211       1111222222233443 2   478999976654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=9.5e-08  Score=64.24  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=20.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+.-|+++|++|+||||.+.+|..
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            466789999999999999877654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=4.4e-08  Score=65.74  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=19.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +.-|+++|++|+||||.+.+|..
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45578899999999999988764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.28  E-value=4.2e-07  Score=60.85  Aligned_cols=65  Identities=22%  Similarity=0.134  Sum_probs=37.3

Q ss_pred             EEEEEEeCCCCCccccccccc------CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         53 VELALWDTAGQEDYDRLRPLS------YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      ..+.++||+|...........      ..+.+-.++|.|++.+..-......+...+      -+--+++||.|...
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~------~~~~~I~TKlDe~~  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------GVTGLVLTKLDGDA  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT------CCCEEEEECGGGCS
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC------CCCeeEEeecCccc
Confidence            468999999965543322111      125688899999877632222212222221      23359999999644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.24  E-value=1.9e-07  Score=63.25  Aligned_cols=85  Identities=19%  Similarity=0.272  Sum_probs=56.6

Q ss_pred             CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH---HH
Q psy14754         74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA---QK  150 (192)
Q Consensus        74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  150 (192)
                      ..+.|.+++|+++.+|+--....+.++-.....  +++.+||+||+|+.++...             ......+.   ..
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~-------------~~~~~~~~~~y~~   72 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDT-------------EDTIQAYAEDYRN   72 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHH-------------HHHHHHHHHHHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc--CCCEEEEEecccccccHHH-------------HHHHHHHHHHHhh
Confidence            357899999999988743222223444444433  8999999999999764221             11222222   23


Q ss_pred             cCCceEEEeccCCcCCHHHHHHHH
Q psy14754        151 INAFAYLECSAKSKEGVREVFETA  174 (192)
Q Consensus       151 ~~~~~~~~~Sa~~~~gi~~~~~~i  174 (192)
                      ++ ++++.+|+++++|++++.+.+
T Consensus        73 ~g-~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          73 IG-YDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             HT-CCEEECCHHHHTTCTTTGGGG
T ss_pred             cc-ccceeeecCChhHHHHHHHhh
Confidence            34 689999999999999887665

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1.2e-06  Score=59.39  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      .+|.|..|||||||+++++...
T Consensus         6 ~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEeeCCCCCHHHHHHHHHhcC
Confidence            6789999999999999998853

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.14  E-value=5.8e-07  Score=58.59  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      +||+++|++|+|||||++.+++.-
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcC
Confidence            589999999999999999998743

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.00  E-value=1.4e-06  Score=56.99  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-+|+|.|++|||||||+++|...
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.99  E-value=2e-06  Score=55.61  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +..++|++.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            56789999999999999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.97  E-value=1.9e-06  Score=55.66  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -.+|+++|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.90  E-value=3e-06  Score=55.83  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=21.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+++|+++|++||||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999988765

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.2e-06  Score=54.39  Aligned_cols=21  Identities=29%  Similarity=0.230  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -|+|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            389999999999999999985

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.86  E-value=3.9e-06  Score=54.76  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +||+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.86  E-value=4.7e-06  Score=54.96  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=23.6

Q ss_pred             cccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          2 AAIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         2 ~~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +.+-+||+++|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999998763

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.81  E-value=6.2e-06  Score=54.28  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .-+||+++|+|||||||....|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=6.1e-06  Score=53.87  Aligned_cols=23  Identities=13%  Similarity=0.384  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +||+++|+|||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.79  E-value=6e-06  Score=53.99  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ++|+++|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999888764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.78  E-value=6.3e-06  Score=52.05  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |++.|+|||||||++++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.77  E-value=7.5e-06  Score=54.02  Aligned_cols=24  Identities=13%  Similarity=0.188  Sum_probs=21.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+..|+|+|+|||||||+.+.|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=7e-06  Score=53.47  Aligned_cols=22  Identities=14%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +||+++|+|||||||....|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988865

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=9.5e-06  Score=52.91  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+||+++|+|||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.1e-05  Score=53.16  Aligned_cols=23  Identities=13%  Similarity=0.172  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999988865

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.69  E-value=1e-05  Score=51.98  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -|++.|++||||||+.++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.67  E-value=1.2e-05  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=18.9

Q ss_pred             eE-EEEcCCCCchhHHHHHHhhC
Q psy14754          7 KL-VIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i-~v~G~~~~GKSsli~~l~~~   28 (192)
                      || .|+|.+|||||||+++|...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            45 59999999999999998753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=1.9e-05  Score=51.09  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=21.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhh
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +.+.=|+++|.|||||||+..++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566799999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.7e-05  Score=50.39  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .|+++|++||||||+...|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=2e-05  Score=51.37  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |+++||+||||||+++.|....
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6789999999999999987653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=1.9e-05  Score=52.48  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.1e-05  Score=50.95  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .|+|.|++|+|||||+.++..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.3e-05  Score=53.40  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      +|+|+|++|||||||++.+.+-..
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            689999999999999999988653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2.5e-05  Score=50.08  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .||+++|.+||||||+...|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999888754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.6e-05  Score=51.72  Aligned_cols=22  Identities=18%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |+++||+|+|||||+++|+...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8899999999999999998643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.49  E-value=3e-05  Score=49.54  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +|+++|++||||||+...|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.48  E-value=2.9e-05  Score=50.38  Aligned_cols=20  Identities=20%  Similarity=0.204  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhHHHHHHhh
Q psy14754          8 LVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~   27 (192)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=3e-05  Score=50.74  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |+|+||+|||||||+++|....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7999999999999999997754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=6e-05  Score=52.46  Aligned_cols=59  Identities=20%  Similarity=0.116  Sum_probs=36.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC--CCcc--cCceeeeee-EEEEECCeEEEEEEEeCCCCCc
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF--PEVY--VPTVFENYV-ADIEVDSKQVELALWDTAGQED   65 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~--~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~D~~g~~~   65 (192)
                      =|.|+|+.++|||+|+|.|++...  ....  .+.+..... ..-..+.....+.++||.|...
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            478999999999999999998663  2211  111111111 1111234556789999999644

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.3e-05  Score=49.50  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ++++|++||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667999999999999998763

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.45  E-value=3.4e-05  Score=49.64  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999988764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=3.9e-05  Score=50.54  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .--|+++|+|||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999998763

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.42  E-value=4.5e-05  Score=51.18  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..++|+|-||+||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.42  E-value=5.1e-05  Score=50.28  Aligned_cols=24  Identities=29%  Similarity=0.223  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcccc
Confidence            478999999999999999988654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.42  E-value=5.4e-05  Score=51.64  Aligned_cols=24  Identities=13%  Similarity=0.257  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|+.|||||||++.+.+-..
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            689999999999999999987654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.40  E-value=5.2e-05  Score=49.65  Aligned_cols=24  Identities=38%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .++=|+|.|++|||||||.++|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356689999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.39  E-value=4.6e-05  Score=48.95  Aligned_cols=21  Identities=14%  Similarity=0.415  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999998774

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=5.6e-05  Score=51.08  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            378999999999999999887653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.39  E-value=5.6e-05  Score=51.04  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|++|||||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCcchhhHhccCCCC
Confidence            378999999999999998877643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.38  E-value=5.5e-05  Score=51.95  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++|+|++|||||||++.+++-..
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCChHHHHHHHHhcccC
Confidence            689999999999999999987553

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.37  E-value=4.9e-05  Score=48.95  Aligned_cols=23  Identities=13%  Similarity=0.171  Sum_probs=19.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -+-|.++|.+||||||+...|..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36688999999999999988764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.37  E-value=4.5e-05  Score=50.16  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-|+++|+|||||||+...|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34789999999999999988763

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6.4e-05  Score=51.52  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++|+|+.|||||||++.+.+-..
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcccC
Confidence            689999999999999999987654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=5.3e-05  Score=49.73  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |+|+||+|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6.8e-05  Score=49.99  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            67799999999999999998865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.32  E-value=8e-05  Score=50.48  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.5

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      ++++|+.|||||||++.+.+-..
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCChHHHHHHHHHcCCC
Confidence            67899999999999999998654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.32  E-value=8e-05  Score=50.50  Aligned_cols=25  Identities=36%  Similarity=0.575  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      -++++|+.|||||||++.+.+-..+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            3789999999999999999887543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=7.7e-05  Score=52.01  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++|+|+.|||||||++.+++-..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCc
Confidence            589999999999999999988654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.29  E-value=7.8e-05  Score=51.41  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      +.-|++.|+||+||||+..++.+..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4459999999999999999987643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.28  E-value=7.4e-05  Score=48.03  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999988854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=7.3e-05  Score=49.70  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |+|+||+|||||||+++|+...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6789999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.27  E-value=6.2e-05  Score=50.71  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=21.0

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      ++++|+.|||||||++.+.+-..
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCcC
Confidence            78999999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.26  E-value=0.0001  Score=50.06  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            478999999999999999987654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.25  E-value=9.1e-05  Score=52.70  Aligned_cols=26  Identities=19%  Similarity=0.249  Sum_probs=22.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      ..+|+|.|++|||||||+++|+....
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcc
Confidence            45799999999999999999997543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.25  E-value=9.6e-05  Score=50.28  Aligned_cols=24  Identities=21%  Similarity=0.291  Sum_probs=21.3

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      ++++|+.|||||||++.+.+-..+
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~~p   58 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCC
Confidence            689999999999999999987543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=9e-05  Score=50.31  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|++|||||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCcc
Confidence            378999999999999999988653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.24  E-value=4.8e-05  Score=52.25  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      +++|+|++|||||||++.+.+-..
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHhcCC
Confidence            689999999999999998877543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.0001  Score=50.07  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.3

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQFP   31 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~~   31 (192)
                      ++++|+.|||||||++.+.+-..+
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCC
Confidence            679999999999999999987643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=4.2e-05  Score=50.06  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=19.8

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..-|.++|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999998865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=6.2e-05  Score=50.98  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=19.4

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ++++|+.|||||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            789999999999999999874

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.17  E-value=9.9e-05  Score=47.96  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=17.6

Q ss_pred             eEE-EEcCCCCchhHHHHHHhh
Q psy14754          7 KLV-IVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~-v~G~~~~GKSsli~~l~~   27 (192)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            565 569999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.14  E-value=0.00015  Score=49.83  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      ++++|+.|||||||++.+.+-..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHHCCCc
Confidence            68999999999999999998754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.00013  Score=49.54  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ...+++.||||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.00013  Score=49.40  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..+++.||||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46999999999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.11  E-value=0.00017  Score=49.60  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -++++|+.|||||||++.+.+-..
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcc
Confidence            478999999999999999987643

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.10  E-value=8.4e-05  Score=50.45  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      .++++|++|||||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcC
Confidence            478999999999999999998654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00019  Score=47.01  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=21.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-+++++|+||+|||+++..|...
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            3558999999999999999887653

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.01  E-value=0.00019  Score=47.00  Aligned_cols=26  Identities=31%  Similarity=0.307  Sum_probs=22.6

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..++-|+|-|..||||||+++.|...
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45778999999999999999998754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00021  Score=47.68  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      =|+|.|||||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4778899999999999888653

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00023  Score=49.09  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=21.1

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+-+++++|++|+|||++++.|...
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999887653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.96  E-value=0.00022  Score=48.72  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..|++.|+||+|||++++++.+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            45999999999999999998753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.95  E-value=0.00023  Score=47.94  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+++.|++|+||||++..+.+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999988764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.92  E-value=0.00035  Score=45.57  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=21.3

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++=|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            3677899999999999999988653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00027  Score=48.17  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ..+++.||||+||||++.++.+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            358999999999999999998753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.00028  Score=49.86  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-.++++||||+|||.|.+++.+.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            346999999999999999998764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.86  E-value=0.00097  Score=42.00  Aligned_cols=24  Identities=25%  Similarity=0.149  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      -|++-|+-|||||||++.+...--
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEecCCCccHHHHHHHHHhhcc
Confidence            478899999999999999887543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.81  E-value=0.00035  Score=47.83  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.80  E-value=0.00036  Score=46.32  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=20.5

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ...-|.+.|.||||||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999874

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00038  Score=47.50  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.|++.|+||+|||++++++.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.74  E-value=0.00036  Score=47.87  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -|+|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477899999999999998875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00042  Score=47.11  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..+++.|++|+||||++..+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00076  Score=44.65  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=21.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      +.+=|+|.|.+||||||+.+.|....
T Consensus         2 mk~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHCC
Confidence            34568899999999999999876543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00058  Score=46.79  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -.+++.||||+|||++++++...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            45999999999999999998863

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00049  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+++.|++|+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            5899999999999999988764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.0006  Score=46.79  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +-.|++.||||+|||++++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            446999999999999999998874

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.65  E-value=0.00029  Score=48.58  Aligned_cols=21  Identities=29%  Similarity=0.203  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00055  Score=45.79  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..+++.|++|+||||+++.+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            35899999999999999887653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.0006  Score=45.61  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+++.|++|+||||++..+.+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.00064  Score=44.76  Aligned_cols=21  Identities=29%  Similarity=0.340  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00076  Score=47.41  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=20.8

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .++=|+|.|++|||||||.+.|..
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHH
Confidence            478899999999999999887754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.46  E-value=0.00078  Score=49.85  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +-+|+++||+|+|||-|.++|.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999865

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00076  Score=46.46  Aligned_cols=25  Identities=28%  Similarity=0.488  Sum_probs=21.5

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ...|++.|++|+|||+|++++.+..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3469999999999999999997654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.44  E-value=0.0014  Score=43.24  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      +=|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999987754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.00098  Score=43.94  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=19.7

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      +.|.|+||+|||+|+..+.....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999876543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.38  E-value=0.0012  Score=42.43  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ..-|++.|++|+||||+...|....
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3468999999999999999988754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.34  E-value=0.00065  Score=47.18  Aligned_cols=23  Identities=13%  Similarity=0.371  Sum_probs=16.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..=|+|.|.+||||||+.++|..
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            34599999999999999987643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0015  Score=45.34  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=19.6

Q ss_pred             cceeEEEEcCCCCchhHHHHHHh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~   26 (192)
                      .++=|+|.|.+|||||||...+.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            46778999999999999997653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0011  Score=43.79  Aligned_cols=20  Identities=35%  Similarity=0.341  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhHHHHHHhh
Q psy14754          8 LVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~   27 (192)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.00092  Score=48.55  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=18.9

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .-+++++|+||+|||++++.|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            45689999999999999965543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.20  E-value=0.0014  Score=42.03  Aligned_cols=25  Identities=12%  Similarity=0.220  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ..-|++.|++|+||||+...|....
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            3468999999999999999988654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.15  E-value=0.0014  Score=44.01  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.4

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ++|.|+||+|||+|...+....
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6899999999999999987654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.13  E-value=0.0014  Score=44.30  Aligned_cols=23  Identities=22%  Similarity=0.140  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      ++|.|+||+|||+|..+++....
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999876543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.11  E-value=0.0015  Score=46.33  Aligned_cols=29  Identities=17%  Similarity=0.071  Sum_probs=24.8

Q ss_pred             CcccceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |-+.-++|.|=|..||||||+++.|...-
T Consensus         1 ~~m~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           1 VKMGVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             CCEEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             CCccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            44567899999999999999999987653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0011  Score=44.58  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999987764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.06  E-value=0.0019  Score=41.14  Aligned_cols=25  Identities=24%  Similarity=0.318  Sum_probs=21.6

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -.-|++.|++|+||||+.-.+....
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            4568999999999999998888764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0018  Score=42.85  Aligned_cols=20  Identities=20%  Similarity=0.268  Sum_probs=16.5

Q ss_pred             EEEEcCCCCchhHHHHHHhh
Q psy14754          8 LVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~   27 (192)
                      |++-|..||||||++..|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56669999999998877654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.99  E-value=0.0012  Score=46.83  Aligned_cols=21  Identities=19%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.96  E-value=0.0023  Score=45.98  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .--+++.||||+|||+|...+.+
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.96  E-value=0.002  Score=47.06  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      |+|.|+.||||||.+..++...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            8999999999999999988743

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.00038  Score=45.50  Aligned_cols=18  Identities=22%  Similarity=0.510  Sum_probs=16.1

Q ss_pred             EEEcCCCCchhHHHHHHh
Q psy14754          9 VIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         9 ~v~G~~~~GKSsli~~l~   26 (192)
                      +|+|+.||||||++.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            568999999999999975

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.86  E-value=0.0023  Score=43.01  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -++|.|+||+|||+|+.++...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3689999999999999888764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.73  E-value=0.0021  Score=44.86  Aligned_cols=17  Identities=29%  Similarity=0.526  Sum_probs=15.9

Q ss_pred             EEEcCCCCchhHHHHHH
Q psy14754          9 VIVGDGACGKTCLLIVF   25 (192)
Q Consensus         9 ~v~G~~~~GKSsli~~l   25 (192)
                      +++|+.||||||++.++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            68899999999999987

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.63  E-value=0.0031  Score=42.29  Aligned_cols=22  Identities=18%  Similarity=0.078  Sum_probs=19.3

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      ++|.|++|+|||+|+..+....
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6899999999999999987654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.61  E-value=0.0037  Score=44.32  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=22.8

Q ss_pred             ccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          3 AIRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         3 ~~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-++|.|=|..|+||||+++.|...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            45689999999999999999988763

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0033  Score=42.19  Aligned_cols=23  Identities=30%  Similarity=0.554  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      --|+|=|..||||||+++.|...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            45889999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0035  Score=42.19  Aligned_cols=23  Identities=22%  Similarity=0.101  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhCC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      -++|.|++|+|||+|..++....
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999987643

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.53  E-value=0.003  Score=41.22  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=20.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+--+++.||+++|||.|+++++.-
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            3456899999999999999987754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.47  E-value=0.0037  Score=44.19  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=21.2

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .-++|.|=|..|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            456899999999999999998864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.45  E-value=0.0045  Score=43.60  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=18.1

Q ss_pred             eEEE-EcCCCCchhHHHHHHhhC
Q psy14754          7 KLVI-VGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v-~G~~~~GKSsli~~l~~~   28 (192)
                      .+++ .|+||+|||.|.+++.+.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            4444 699999999999998764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.45  E-value=0.0044  Score=42.78  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -|+|.|..|.|||||+..+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999998754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.35  E-value=0.0051  Score=41.29  Aligned_cols=21  Identities=14%  Similarity=0.121  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999998864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.0041  Score=45.18  Aligned_cols=18  Identities=28%  Similarity=0.512  Sum_probs=16.3

Q ss_pred             EEEcCCCCchhHHHHHHh
Q psy14754          9 VIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         9 ~v~G~~~~GKSsli~~l~   26 (192)
                      +|+|+.|||||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            688999999999999973

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0049  Score=43.37  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .++++||+|+|||.|...+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            588999999999999998875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.0057  Score=40.23  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.25  E-value=0.0054  Score=42.06  Aligned_cols=20  Identities=10%  Similarity=0.253  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchhHHHHHHhh
Q psy14754          8 LVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~   27 (192)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999877653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.0059  Score=41.05  Aligned_cols=20  Identities=25%  Similarity=0.461  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhHHHHHHhh
Q psy14754          8 LVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~   27 (192)
                      +++.|++|+||||++..+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999988754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.18  E-value=0.0054  Score=40.72  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -++|.|++|+|||+|...++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            367899999999999877643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.0057  Score=40.43  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |++=|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999887643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.13  E-value=0.0076  Score=43.27  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .-+++++||+|+|||-+..+|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45699999999999999998865

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.07  E-value=0.0069  Score=40.04  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=19.1

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.84  E-value=0.0053  Score=42.55  Aligned_cols=15  Identities=20%  Similarity=0.481  Sum_probs=13.4

Q ss_pred             EEEEcCCCCchhHHH
Q psy14754          8 LVIVGDGACGKTCLL   22 (192)
Q Consensus         8 i~v~G~~~~GKSsli   22 (192)
                      ++|.|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            789999999999865

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.66  E-value=0.0068  Score=42.34  Aligned_cols=16  Identities=38%  Similarity=0.592  Sum_probs=13.9

Q ss_pred             eEEEEcCCCCchhHHH
Q psy14754          7 KLVIVGDGACGKTCLL   22 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli   22 (192)
                      .++|.|.+||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3789999999999765

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.54  E-value=0.0098  Score=40.58  Aligned_cols=20  Identities=25%  Similarity=0.441  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhHHHHHHhh
Q psy14754          8 LVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+|.|++|+|||+|+..+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999977653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.012  Score=43.02  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .-.++|+|.+|||||+++..++..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            346999999999999998877644

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.27  E-value=0.014  Score=39.93  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .+--+.+.|++++|||+|++.+...
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3455788999999999999998764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.015  Score=40.19  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999887753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.019  Score=41.02  Aligned_cols=19  Identities=32%  Similarity=0.337  Sum_probs=15.8

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy14754          7 KLVIVGDGACGKTCLLIVF   25 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l   25 (192)
                      -.+|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4688999999999988543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.60  E-value=0.026  Score=33.45  Aligned_cols=23  Identities=13%  Similarity=0.078  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhh
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      -+-|.+-|..|+||||+.++|..
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.028  Score=38.33  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchhHHHHHHhhCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      +.+.|++++|||||+-.+....
T Consensus        57 tei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHHH
Confidence            5789999999999998877544

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.20  E-value=0.024  Score=39.75  Aligned_cols=22  Identities=23%  Similarity=0.375  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      .++++|++|+|||.+...|...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            4678899999999999887653

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.76  E-value=0.031  Score=35.69  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchhHHHHHHhhCCC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKDQF   30 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~~~   30 (192)
                      |+|+|...||||.+..++.....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCS
T ss_pred             EEEECCCCccHHHHHHHHHhcCC
Confidence            68999999999999999875543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.11  E-value=0.048  Score=37.29  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCchhHHHHHHhhC
Q psy14754          7 KLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999888654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.93  E-value=0.049  Score=36.63  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754          5 RKKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      ..-|+|.|++|+||+.+...+-..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHh
Confidence            456899999999999999888653

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.32  E-value=0.06  Score=36.43  Aligned_cols=69  Identities=13%  Similarity=0.166  Sum_probs=37.6

Q ss_pred             EEEEEEeCCCCCcccc-cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC--CCCc-EEEEeecccccC
Q psy14754         53 VELALWDTAGQEDYDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVP-IILVGNKKDLRN  123 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~D~~~  123 (192)
                      +.+.++|+|+.-.... ........+|.++++... +..++.... .....+....  .+.+ .-++.|+.+...
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~-~~~~~i~~~~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAAN-NISKGIQKYAKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHH-HHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHH-HHHHHHHhhccccceeccceEEeeecCCC
Confidence            4688999987533222 112223457877777654 455666553 3444443322  1333 347889887654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.054  Score=36.82  Aligned_cols=21  Identities=29%  Similarity=0.623  Sum_probs=15.3

Q ss_pred             ceeEEEE-cCCCCchhHHHHHH
Q psy14754          5 RKKLVIV-GDGACGKTCLLIVF   25 (192)
Q Consensus         5 ~~~i~v~-G~~~~GKSsli~~l   25 (192)
                      .-||+++ |..|+||||+.-.|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3455554 99999999987554

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.84  E-value=0.1  Score=31.23  Aligned_cols=21  Identities=10%  Similarity=-0.020  Sum_probs=16.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhh
Q psy14754          7 KLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         7 ~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ..+|.++.|+|||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            457799999999998866543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.35  E-value=0.091  Score=34.99  Aligned_cols=19  Identities=26%  Similarity=0.410  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q psy14754          8 LVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~   26 (192)
                      ++|.|+..+||||+++++.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999998754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.15  E-value=0.095  Score=34.63  Aligned_cols=19  Identities=26%  Similarity=0.448  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchhHHHHHHh
Q psy14754          8 LVIVGDGACGKTCLLIVFS   26 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~   26 (192)
                      ++|.|+..+||||+++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            7899999999999998754

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.71  E-value=0.071  Score=37.00  Aligned_cols=14  Identities=43%  Similarity=0.506  Sum_probs=12.9

Q ss_pred             EEEcCCCCchhHHH
Q psy14754          9 VIVGDGACGKTCLL   22 (192)
Q Consensus         9 ~v~G~~~~GKSsli   22 (192)
                      +++|.+|+|||||.
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999976

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.64  E-value=0.11  Score=33.64  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=17.8

Q ss_pred             eeEEEEcCC-CCchhHHHHHHhh
Q psy14754          6 KKLVIVGDG-ACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~-~~GKSsli~~l~~   27 (192)
                      -|+.|.|.. |+||||+.-.|..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            378999995 9999999866543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.62  E-value=0.1  Score=35.49  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +.+.|++++|||+|+..+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            568999999999999887764

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.58  E-value=0.083  Score=36.28  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~   28 (192)
                      -|++++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            37899999999999998776654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.54  E-value=0.11  Score=35.28  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhHHHHHHhhC
Q psy14754          8 LVIVGDGACGKTCLLIVFSKD   28 (192)
Q Consensus         8 i~v~G~~~~GKSsli~~l~~~   28 (192)
                      +.+.|++++|||+|+-.+...
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            568999999999999777643

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.53  E-value=0.12  Score=35.24  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=17.4

Q ss_pred             cceeEEEEcCCCCchhHHHHHH
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVF   25 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l   25 (192)
                      .+.-|++.|..|+||||+...+
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHH
Confidence            3445788999999999987554

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.03  E-value=0.15  Score=31.42  Aligned_cols=21  Identities=14%  Similarity=0.271  Sum_probs=16.7

Q ss_pred             ccceeEEEEcC-CCCchhHHHH
Q psy14754          3 AIRKKLVIVGD-GACGKTCLLI   23 (192)
Q Consensus         3 ~~~~~i~v~G~-~~~GKSsli~   23 (192)
                      ++++||.|+|. .++|.+....
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~   22 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYS   22 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHH
T ss_pred             CCceEEEEECCCCHHHHHHHHH
Confidence            46899999995 7899886554

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.97  E-value=0.079  Score=36.87  Aligned_cols=16  Identities=38%  Similarity=0.405  Sum_probs=13.7

Q ss_pred             EEEEcCCCCchhHHHH
Q psy14754          8 LVIVGDGACGKTCLLI   23 (192)
Q Consensus         8 i~v~G~~~~GKSsli~   23 (192)
                      -+++|.+|+|||||..
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4789999999999763

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=88.82  E-value=0.11  Score=35.43  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSKDQ   29 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~~~   29 (192)
                      =|++|+|.+|+|||+|+..+....
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ceEeeccCCCCChHHHHHHHHhhh
Confidence            378999999999999997765443

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.66  E-value=0.095  Score=36.51  Aligned_cols=15  Identities=40%  Similarity=0.443  Sum_probs=13.5

Q ss_pred             EEEEcCCCCchhHHH
Q psy14754          8 LVIVGDGACGKTCLL   22 (192)
Q Consensus         8 i~v~G~~~~GKSsli   22 (192)
                      -+++|.+|+|||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999987

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.65  E-value=0.65  Score=28.12  Aligned_cols=49  Identities=16%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             cCCCCCEEEEEEECCCh--hhhh-------chhhhhHHHHhhhCCCCcEEEEeecccc
Q psy14754         73 SYPDTDVILMCFSIDSP--DSLE-------NIPEKWTPEVKHFCPNVPIILVGNKKDL  121 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~--~~~~-------~~~~~~~~~~~~~~~~~p~ivv~nK~D~  121 (192)
                      .++++|++++..-....  ++-.       .+.+.+.+.+.++.++.-++++.|-.|.
T Consensus        65 ~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~  122 (144)
T d1mlda1          65 CLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNS  122 (144)
T ss_dssp             HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHH
T ss_pred             HhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Confidence            45789988887543221  1111       1123455566677788888899999994

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.82  E-value=0.16  Score=32.72  Aligned_cols=24  Identities=8%  Similarity=0.077  Sum_probs=20.7

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      ....+++-|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999988775

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.75  E-value=0.16  Score=34.60  Aligned_cols=67  Identities=10%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             EEEEEEeCCCCCccccccc-ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhh--CCCCcE-EEEeecccc
Q psy14754         53 VELALWDTAGQEDYDRLRP-LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPI-ILVGNKKDL  121 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~-ivv~nK~D~  121 (192)
                      +.+.++|+|+......... .....++.++++.. .+..++..+. .....+...  ..+.++ .+|.|+.+.
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~-~~~~~i~~~~~~~~~~~~gvv~n~~~~  189 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAAN-NISKGIVKYANSGSVRLGGLICNSRNT  189 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHH-HHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHH-HHHHHHHhhhhcccccccceeehhhcc
Confidence            4678889887543222211 11234566666644 4455555553 333333321  124444 378898764

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.55  E-value=0.75  Score=27.74  Aligned_cols=19  Identities=42%  Similarity=0.357  Sum_probs=14.9

Q ss_pred             EEEcCCCCchhHHHHHHhh
Q psy14754          9 VIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         9 ~v~G~~~~GKSsli~~l~~   27 (192)
                      +++|+=.|||||-+-+...
T Consensus        11 lI~GpMfSGKTteLi~~~~   29 (141)
T d1xx6a1          11 VIVGPMYSGKSEELIRRIR   29 (141)
T ss_dssp             EEECSTTSSHHHHHHHHHH
T ss_pred             EEEeccccHHHHHHHHHHH
Confidence            4589999999998855543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=87.14  E-value=0.2  Score=30.35  Aligned_cols=17  Identities=35%  Similarity=0.430  Sum_probs=13.2

Q ss_pred             EEEcCCCCchhH-HHHHH
Q psy14754          9 VIVGDGACGKTC-LLIVF   25 (192)
Q Consensus         9 ~v~G~~~~GKSs-li~~l   25 (192)
                      +++||=.||||| |+.++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            468999999999 44443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=86.68  E-value=0.14  Score=30.27  Aligned_cols=19  Identities=21%  Similarity=0.039  Sum_probs=14.6

Q ss_pred             cceeEEEEcCCCCchhHHH
Q psy14754          4 IRKKLVIVGDGACGKTCLL   22 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli   22 (192)
                      ..-++++.+++|+|||...
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            3456788899999999443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.46  E-value=0.25  Score=31.43  Aligned_cols=19  Identities=26%  Similarity=0.294  Sum_probs=14.8

Q ss_pred             ceeEEEEcCCCCchhHHHH
Q psy14754          5 RKKLVIVGDGACGKTCLLI   23 (192)
Q Consensus         5 ~~~i~v~G~~~~GKSsli~   23 (192)
                      .-++++.++.|+|||.+..
T Consensus        23 ~~n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          23 ETNCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             GSCEEEECCTTSCHHHHHH
T ss_pred             cCCeEEEeCCCCcHHHHHH
Confidence            3468899999999997433

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=86.19  E-value=0.54  Score=29.54  Aligned_cols=101  Identities=14%  Similarity=0.130  Sum_probs=54.9

Q ss_pred             cceeEEEEcC-CCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-----------------
Q psy14754          4 IRKKLVIVGD-GACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-----------------   65 (192)
Q Consensus         4 ~~~~i~v~G~-~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------------   65 (192)
                      .++||.|+|. .+.|-| |+..|..+.....                ...+.+.+.|.+....                 
T Consensus        23 ~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~   85 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNH-LLFKLASGEVFGQ----------------DQPIALKLLGSERSFQALEGVAMELEDSLYPLL   85 (175)
T ss_dssp             CCEEEEEETTTSHHHHH-HHHHHHHTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE
T ss_pred             CCcEEEEECCCcHHHHH-HHHHHHcCcccCC----------------CceEEEEEecCccccchhcchhhhhcccccccc
Confidence            5789999997 667754 5555655543211                1123456666554110                 


Q ss_pred             ----ccccccccCCCCCEEEEEEECCCh--hhhhch-------hhhhHHHHhhhCC-CCcEEEEeecccc
Q psy14754         66 ----YDRLRPLSYPDTDVILMCFSIDSP--DSLENI-------PEKWTPEVKHFCP-NVPIILVGNKKDL  121 (192)
Q Consensus        66 ----~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~-------~~~~~~~~~~~~~-~~p~ivv~nK~D~  121 (192)
                          ........++++|+++++-.....  ++..++       ...+.+.+.++.+ +.-++++.|-.|.
T Consensus        86 ~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          86 REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             EEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                011112346789999888655432  111111       1234455566665 5667788888875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.80  E-value=0.53  Score=28.58  Aligned_cols=50  Identities=18%  Similarity=0.328  Sum_probs=30.2

Q ss_pred             cCCCCCEEEEEEECCChh--hhhc-------hhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         73 SYPDTDVILMCFSIDSPD--SLEN-------IPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~--~~~~-------~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      .++++|+++++.-.....  +-.+       +.....+.+.++.++.-++++.|-+|..
T Consensus        66 ~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m  124 (145)
T d2cmda1          66 ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTT  124 (145)
T ss_dssp             HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHH
T ss_pred             ccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHH
Confidence            356889988876443211  1111       1123345566677888889999999953

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=85.13  E-value=1.2  Score=26.94  Aligned_cols=50  Identities=16%  Similarity=0.174  Sum_probs=27.7

Q ss_pred             cCCCCCEEEEEEECCChh---hhh------chhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         73 SYPDTDVILMCFSIDSPD---SLE------NIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~---~~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      .+.++|++++........   ..+      .+...+.+.+.++.++.-++++-|-+|..
T Consensus        69 ~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~  127 (146)
T d1ez4a1          69 DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDIL  127 (146)
T ss_dssp             GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHH
T ss_pred             HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHH
Confidence            457899888875443221   111      11224555666677777777777777753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=84.54  E-value=1.2  Score=26.68  Aligned_cols=51  Identities=18%  Similarity=0.281  Sum_probs=28.5

Q ss_pred             ccCCCCCEEEEEEECCChhh---hh------chhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         72 LSYPDTDVILMCFSIDSPDS---LE------NIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~---~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      ..+.++|.+++..-......   .+      .+...+.+.+.+++++.-++++.|-+|..
T Consensus        65 ~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~  124 (142)
T d1guza1          65 ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIM  124 (142)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHH
T ss_pred             HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHH
Confidence            34678888887754322111   11      11123445566677777677777887753

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.53  E-value=1.8  Score=27.80  Aligned_cols=65  Identities=14%  Similarity=0.088  Sum_probs=43.4

Q ss_pred             EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEE-EEeecccccC
Q psy14754         53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRN  123 (192)
Q Consensus        53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~  123 (192)
                      +.+.++|+|+....  .....+..+|.++++.... ..++.... .....+.+.  +.|++ +|+|+.+...
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~-~~~~~~~~~--~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTM-KVGIVLKKA--GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHH-HHHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhh-HHHHHHhhh--hhhhhhhhhccccccc
Confidence            46899999986432  2334566799999998754 45566653 444555543  67765 8999998644

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.05  E-value=0.49  Score=28.95  Aligned_cols=51  Identities=18%  Similarity=0.317  Sum_probs=28.7

Q ss_pred             ccCCCCCEEEEEEECCChhhhh---------chhhhhHHHHhhhCC-CCcEEEEeeccccc
Q psy14754         72 LSYPDTDVILMCFSIDSPDSLE---------NIPEKWTPEVKHFCP-NVPIILVGNKKDLR  122 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~~~---------~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~  122 (192)
                      ..++++|++++.........-+         .....+.+.+.++++ +.-++++.|-.|..
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~  136 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTN  136 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHH
Confidence            4567899999887554321111         111234445556654 45566778888753

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.82  E-value=1.6  Score=27.04  Aligned_cols=54  Identities=15%  Similarity=0.099  Sum_probs=39.8

Q ss_pred             CChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754         87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC  159 (192)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (192)
                      +|..+++...+.....+..-  ..|+|+++.......                ..++..+|++..+ +|++.+
T Consensus         3 sd~~~l~~~v~~~~~~l~~A--krPvIi~G~g~~~~~----------------a~~~l~~lae~~~-~Pv~tt   56 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIANR--DKVAVLVGSKLRAAG----------------AEEAAVKFTDALG-GAVATM   56 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC--SCEEEEECTTTTTTT----------------CHHHHHHHHHHHC-CCEEEE
T ss_pred             CChHHHHHHHHHHHHHHHcC--CCEEEEECcCccccc----------------hHHHHHHHHHhhc-eeEEec
Confidence            56667777666666666654  899999999997543                4677888999988 477654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.76  E-value=1.8  Score=26.07  Aligned_cols=52  Identities=13%  Similarity=0.166  Sum_probs=30.8

Q ss_pred             ccCCCCCEEEEEEECCChhh---hhch------hhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         72 LSYPDTDVILMCFSIDSPDS---LENI------PEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        72 ~~~~~~~~~i~v~d~~~~~~---~~~~------~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      ..+.++|.+++..-......   .+.+      ...+.+.+.++.++.-++++-|-+|...
T Consensus        70 ~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t  130 (148)
T d1ldna1          70 DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILT  130 (148)
T ss_dssp             GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHH
T ss_pred             HHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHH
Confidence            45678898888754433211   1111      1234455567778887888888888643

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.34  E-value=1.6  Score=26.42  Aligned_cols=53  Identities=23%  Similarity=0.271  Sum_probs=33.0

Q ss_pred             cccCCCCCEEEEEEECCChh--------hhh------chhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754         71 PLSYPDTDVILMCFSIDSPD--------SLE------NIPEKWTPEVKHFCPNVPIILVGNKKDLRN  123 (192)
Q Consensus        71 ~~~~~~~~~~i~v~d~~~~~--------~~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  123 (192)
                      ...+.++|++++..-.....        ..+      .+...+.+.+.+++++.-++++-|-+|...
T Consensus        66 ~~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t  132 (150)
T d1t2da1          66 YDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV  132 (150)
T ss_dssp             GGGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHH
T ss_pred             ccccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHH
Confidence            34567899888887653321        111      112244555667778887888889888643

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.08  E-value=0.17  Score=32.46  Aligned_cols=17  Identities=41%  Similarity=0.470  Sum_probs=14.4

Q ss_pred             eeEEEEcCCCCchhHHH
Q psy14754          6 KKLVIVGDGACGKTCLL   22 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli   22 (192)
                      -++++.+++|+|||...
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            36899999999999754

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.92  E-value=0.49  Score=36.56  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=17.9

Q ss_pred             eeEEEEcCCCCchhHHHHHHhh
Q psy14754          6 KKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         6 ~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      =-|++.|.+|||||.-.+.++.
T Consensus        87 QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999998766543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.42  E-value=1.7  Score=26.00  Aligned_cols=50  Identities=18%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             cCCCCCEEEEEEECCChh---hhh------chhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754         73 SYPDTDVILMCFSIDSPD---SLE------NIPEKWTPEVKHFCPNVPIILVGNKKDLR  122 (192)
Q Consensus        73 ~~~~~~~~i~v~d~~~~~---~~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  122 (192)
                      .++++|.+++..-.....   ..+      .+...+.+.+.+++++.-++++-|-+|..
T Consensus        64 ~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~  122 (140)
T d1a5za1          64 DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVL  122 (140)
T ss_dssp             GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHH
T ss_pred             HhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHH
Confidence            467899888875442211   111      11224455666777888778888888763

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=80.20  E-value=0.46  Score=31.39  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=19.0

Q ss_pred             cceeEEEEcCCCCchhHHHHHHhh
Q psy14754          4 IRKKLVIVGDGACGKTCLLIVFSK   27 (192)
Q Consensus         4 ~~~~i~v~G~~~~GKSsli~~l~~   27 (192)
                      .+...++.|..|||||-..-....
T Consensus        75 ~~~~~LL~GdvGsGKT~V~~~a~~   98 (233)
T d2eyqa3          75 LAMDRLVCGDVGFGKTEVAMRAAF   98 (233)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHH
T ss_pred             CccCeEEEcCCCCCcHHHHHHHHH
Confidence            456789999999999987755443