Psyllid ID: psy14769

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Coil and Loop (DISEMBL)
MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSslrdsvpslqgekvASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ
Flexible Loop (DISEMBL)
msdderdydiesaekrahhnalerkrrdhikdsfsslrdsvpslqgekvasRAQILKKAADYIQFMRrknashqqdidDLKRQNAILEAQ
Low Complexity Region (SEG)
MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ
Disordered region (IsUnstruct)
*******************************************************L*KAADYIQF*************************
Disordered Region (DISOPRED)
*******************NALERKRRDHIKDSFSSLRDSVP***********QILKKAADYIQFMR****************NAIL***
Disordered Region (DISEMBL)
**********ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ
Disordered Region (DISPRO)
******************HNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
P61244	160	Protein max OS=Homo sapie	no	N/A	0.977	0.55	0.786	1e-31
P61245	160	Protein max OS=Felis catu	N/A	N/A	0.977	0.55	0.786	1e-31
P52164	160	Protein max OS=Rattus nor	yes	N/A	0.977	0.55	0.786	1e-31
P52162	160	Protein max OS=Gallus gal	yes	N/A	0.977	0.55	0.786	1e-31
P28574	160	Protein max OS=Mus muscul	no	N/A	0.977	0.55	0.786	2e-31
Q07016	163	Protein max OS=Xenopus la	N/A	N/A	0.866	0.478	0.848	3e-31
P52161	165	Protein max OS=Danio reri	yes	N/A	0.866	0.472	0.804	4e-30
P91664	161	Protein max OS=Drosophila	yes	N/A	0.988	0.552	0.548	7e-25
P24793	437	N-myc protein OS=Xenopus	N/A	N/A	0.7	0.144	0.460	5e-10
P20389	454	N-myc 2 proto-oncogene pr	N/A	N/A	0.922	0.182	0.369	3e-09

>sp|P61244|MAX_HUMAN Protein max OS=Homo sapiens GN=MAX PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 78/89 (87%), Gaps = 1/89 (1%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct: 11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query: 62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
          YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct: 70 YIQYMRRKNHTHQQDIDDLKRQNALLEQQ 98

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.
Homo sapiens (taxid: 9606)

>sp|P61245|MAX_FELCA Protein max OS=Felis catus GN=MAX PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 78/89 (87%), Gaps = 1/89 (1%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct: 11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query: 62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
          YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct: 70 YIQYMRRKNHTHQQDIDDLKRQNALLEQQ 98

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.

Felis catus (taxid: 9685)

>sp|P52164|MAX_RAT Protein max OS=Rattus norvegicus GN=Max PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 78/89 (87%), Gaps = 1/89 (1%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct: 11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query: 62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
          YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct: 70 YIQYMRRKNHTHQQDIDDLKRQNALLEQQ 98

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.

Rattus norvegicus (taxid: 10116)

>sp|P52162|MAX_CHICK Protein max OS=Gallus gallus GN=MAX PE=3 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 78/89 (87%), Gaps = 1/89 (1%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct: 11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query: 62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
          YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct: 70 YIQYMRRKNHTHQQDIDDLKRQNALLEQQ 98

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor.

Gallus gallus (taxid: 9031)

>sp|P28574|MAX_MOUSE Protein max OS=Mus musculus GN=Max PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 78/89 (87%), Gaps = 1/89 (1%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct: 11 SDEEQARFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query: 62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
          YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct: 70 YIQYMRRKNDTHQQDIDDLKRQNALLEQQ 98

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. CpG methylation of the recognition site greatly inhibits DNA binding, suggesting that DNA methylation may regulate the MYC/MAX complex in vivo. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.

Mus musculus (taxid: 10090)

>sp|Q07016|MAX_XENLA Protein max OS=Xenopus laevis GN=max PE=2 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 72/79 (91%), Gaps = 1/79 (1%)

Query: 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNA 71
          SA+KRAHHNALERKRRDHIKDSF  LRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN 
Sbjct: 21 SADKRAHHNALERKRRDHIKDSFHGLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNH 79

Query: 72 SHQQDIDDLKRQNAILEAQ 90
          +HQQDIDDLKRQNA+LE Q
Sbjct: 80 THQQDIDDLKRQNALLEQQ 98

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor.

Xenopus laevis (taxid: 8355)

>sp|P52161|MAX_DANRE Protein max OS=Danio rerio GN=max PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 72/82 (87%), Gaps = 4/82 (4%)

Query: 13  AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGE----KVASRAQILKKAADYIQFMRR 68
           A+KRAHHNALERKRRDHIKDSF SLRDSVP+LQGE    K ASRAQIL KA +YIQ+MRR
Sbjct: 22  ADKRAHHNALERKRRDHIKDSFHSLRDSVPALQGEKQSIKQASRAQILDKATEYIQYMRR 81

Query: 69  KNASHQQDIDDLKRQNAILEAQ 90
           KN +HQQDIDDLKRQNA+LE Q
Sbjct: 82  KNHTHQQDIDDLKRQNALLEQQ 103

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor.

Danio rerio (taxid: 7955)

>sp|P91664|MAX_DROME Protein max OS=Drosophila melanogaster GN=Max PE=1 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 79/113 (69%), Gaps = 24/113 (21%)

Query: 1   MSDDERDYDIES-----------------------AEKRAHHNALERKRRDHIKDSFSSL 37
           MSDD+RD DIES                       AEKRAHHNALER+RRDHIK+SF++L
Sbjct: 3   MSDDDRDIDIESDEDGDSDTGLGSSRHTNTANFTQAEKRAHHNALERRRRDHIKESFTNL 62

Query: 38  RDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           R++VP+L+GEK ASRAQILKK  + IQ MRRK + +Q+DI+++KRQN I+  Q
Sbjct: 63  REAVPTLKGEK-ASRAQILKKTTECIQTMRRKISENQKDIEEIKRQNNIIAKQ 114

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor.

Drosophila melanogaster (taxid: 7227)

>sp|P24793|MYCN_XENLA N-myc protein OS=Xenopus laevis GN=mycn PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 2   SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
           S   R+YD E +E+R +HN LER+RR+ ++ SF +LRD VP L   + A++  ILKKA +
Sbjct: 342 SSSPRNYDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELIKNEKAAKVVILKKATE 401

Query: 62  YIQ 64
           Y+ 
Sbjct: 402 YVH 404

May be involved in CNS maturation.

Xenopus laevis (taxid: 8355)

>sp|P20389|MYC2_MARMO N-myc 2 proto-oncogene protein OS=Marmota monax GN=N-MYC2 PE=4 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 6   RDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQF 65
           R  D E + +R +HN LER+RR+ ++ SF++LRD VP L   + A++  ILKKA +Y+ +
Sbjct: 363 RKSDSEDSVRRRNHNILERQRRNDLRSSFTTLRDHVPELVKNEKAAKVVILKKACEYVHY 422

Query: 66  MRRKNASHQQDIDDLK-RQNAILE 88
           ++ K      + + L+ RQ  +L+
Sbjct: 423 LQAKEHQLLMEKEKLQARQQQLLK 446

Marmota monax (taxid: 9995)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
240849031	141	bhlhzip transcription factor max/bigmax-	1.0	0.638	0.9	6e-40
350421414	171	PREDICTED: protein max-like [Bombus impa	1.0	0.526	0.738	2e-36
383861970	171	PREDICTED: protein max-like [Megachile r	1.0	0.526	0.738	3e-36
380018849	171	PREDICTED: protein max-like isoform 1 [A	1.0	0.526	0.738	3e-36
66514865	171	PREDICTED: protein max isoform 2 [Apis m	1.0	0.526	0.738	3e-36
328789189	156	PREDICTED: protein max isoform 1 [Apis m	1.0	0.576	0.738	4e-36
380018851	156	PREDICTED: protein max-like isoform 2 [A	1.0	0.576	0.738	4e-36
340726944	161	PREDICTED: protein max-like isoform 2 [B	1.0	0.559	0.738	4e-36
340726942	171	PREDICTED: protein max-like isoform 1 [B	1.0	0.526	0.738	4e-36
156551283	198	PREDICTED: protein max-like [Nasonia vit	1.0	0.454	0.738	1e-35

>gi|240849031|ref|NP_001155631.1| bhlhzip transcription factor max/bigmax-like [Acyrthosiphon pisum] gi|239790453|dbj|BAH71787.1| ACYPI005523 [Acyrthosiphon pisum]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 87/90 (96%)

Query: 1  MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAA 60
          MSDD+RD ++E+AEKRAHHNALERKRRDHIKDSF+SLRDSVPSLQGEKVASRAQILKKAA
Sbjct: 1  MSDDDRDVELETAEKRAHHNALERKRRDHIKDSFTSLRDSVPSLQGEKVASRAQILKKAA 60

Query: 61 DYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
          DYIQFMRRKN SHQQDIDDLKRQN ILE+Q
Sbjct: 61 DYIQFMRRKNVSHQQDIDDLKRQNNILESQ 90

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421414|ref|XP_003492834.1| PREDICTED: protein max-like [Bombus impatiens]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 89/111 (80%), Gaps = 21/111 (18%)

Query: 1   MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
           MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1   MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40  SVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           SVP+LQGEKVASRAQILKKAA+YIQFMRRKN+SHQQDIDDLKRQN++LE+Q
Sbjct: 61  SVPALQGEKVASRAQILKKAAEYIQFMRRKNSSHQQDIDDLKRQNSLLESQ 111

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861970|ref|XP_003706457.1| PREDICTED: protein max-like [Megachile rotundata]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 88/111 (79%), Gaps = 21/111 (18%)

Query: 1   MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
           MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1   MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40  SVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           SVP+LQGEKVASRAQILKKAA+YIQFMRRKN+SHQQDIDDLKRQN +LE+Q
Sbjct: 61  SVPALQGEKVASRAQILKKAAEYIQFMRRKNSSHQQDIDDLKRQNNLLESQ 111

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018849|ref|XP_003693333.1| PREDICTED: protein max-like isoform 1 [Apis florea]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 88/111 (79%), Gaps = 21/111 (18%)

Query: 1   MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
           MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1   MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40  SVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           SVP LQGEKVASRAQILKKAA+YIQFMRRKN+SHQQDIDDLKRQN++LE+Q
Sbjct: 61  SVPVLQGEKVASRAQILKKAAEYIQFMRRKNSSHQQDIDDLKRQNSLLESQ 111

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66514865|ref|XP_623530.1| PREDICTED: protein max isoform 2 [Apis mellifera]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 88/111 (79%), Gaps = 21/111 (18%)

Query: 1   MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
           MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1   MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40  SVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           SVP LQGEKVASRAQILKKAA+YIQFMRRKN+SHQQDIDDLKRQN++LE+Q
Sbjct: 61  SVPVLQGEKVASRAQILKKAAEYIQFMRRKNSSHQQDIDDLKRQNSLLESQ 111

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789189|ref|XP_003251241.1| PREDICTED: protein max isoform 1 [Apis mellifera]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 88/111 (79%), Gaps = 21/111 (18%)

Query: 1   MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
           MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1   MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40  SVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           SVP LQGEKVASRAQILKKAA+YIQFMRRKN+SHQQDIDDLKRQN++LE+Q
Sbjct: 61  SVPVLQGEKVASRAQILKKAAEYIQFMRRKNSSHQQDIDDLKRQNSLLESQ 111

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018851|ref|XP_003693334.1| PREDICTED: protein max-like isoform 2 [Apis florea]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 88/111 (79%), Gaps = 21/111 (18%)

Query: 1   MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
           MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1   MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40  SVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           SVP LQGEKVASRAQILKKAA+YIQFMRRKN+SHQQDIDDLKRQN++LE+Q
Sbjct: 61  SVPVLQGEKVASRAQILKKAAEYIQFMRRKNSSHQQDIDDLKRQNSLLESQ 111

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726944|ref|XP_003401811.1| PREDICTED: protein max-like isoform 2 [Bombus terrestris]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 88/111 (79%), Gaps = 21/111 (18%)

Query: 1   MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
           MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1   MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40  SVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           SVP+LQGEKVASRAQILKKAA+YIQFMRRKN+SHQQDIDDLKRQN +LE+Q
Sbjct: 61  SVPALQGEKVASRAQILKKAAEYIQFMRRKNSSHQQDIDDLKRQNNLLESQ 111

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726942|ref|XP_003401810.1| PREDICTED: protein max-like isoform 1 [Bombus terrestris]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 88/111 (79%), Gaps = 21/111 (18%)

Query: 1   MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
           MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1   MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40  SVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           SVP+LQGEKVASRAQILKKAA+YIQFMRRKN+SHQQDIDDLKRQN +LE+Q
Sbjct: 61  SVPALQGEKVASRAQILKKAAEYIQFMRRKNSSHQQDIDDLKRQNNLLESQ 111

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551283|ref|XP_001601193.1| PREDICTED: protein max-like [Nasonia vitripennis]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/111 (73%), Positives = 88/111 (79%), Gaps = 21/111 (18%)

Query: 1   MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
           MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1   MSDDDRDIDIESDEGDDSDSRQRHSNNQQYFSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40  SVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
           SVPSLQ EKVASRAQILKKAA+YIQFMRRKN+SHQQDIDDLKRQN++LE+Q
Sbjct: 61  SVPSLQNEKVASRAQILKKAAEYIQFMRRKNSSHQQDIDDLKRQNSLLESQ 111

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
UNIPROTKB|G3V2R5	125	MAX "Protein max" [Homo sapien	0.977	0.704	0.802	2.3e-32
UNIPROTKB|G3V563	121	MAX "Protein max" [Homo sapien	0.977	0.727	0.802	2.3e-32
UNIPROTKB|Q6V3B1	94	MAX "MAX protein" [Homo sapien	0.977	0.936	0.802	2.3e-32
UNIPROTKB|F2Z5K0	151	MAX "Uncharacterized protein"	0.977	0.582	0.802	2.3e-32
UNIPROTKB|P52162	160	MAX "Protein max" [Gallus gall	0.977	0.55	0.786	2e-31
UNIPROTKB|E2QZS2	160	MAX "Uncharacterized protein"	0.977	0.55	0.786	2e-31
UNIPROTKB|P61244	160	MAX "Protein max" [Homo sapien	0.977	0.55	0.786	2e-31
UNIPROTKB|P61245	160	MAX "Protein max" [Felis catus	0.977	0.55	0.786	2e-31
RGD|621101	160	Max "MYC associated factor X"	0.977	0.55	0.786	2e-31
MGI|MGI:96921	160	Max "Max protein" [Mus musculu	0.977	0.55	0.786	2.6e-31

UNIPROTKB|G3V2R5 MAX "Protein max" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 73/91 (80%), Positives = 82/91 (90%)

Query:     1 MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKA 59
             MSD++ D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA
Sbjct:     1 MSDND-DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKA 58

Query:    60 ADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
              +YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    59 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 89

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|G3V563 MAX "Protein max" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 73/91 (80%), Positives = 82/91 (90%)

Query:     1 MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKA 59
             MSD++ D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA
Sbjct:     1 MSDND-DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKA 58

Query:    60 ADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
              +YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    59 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 89

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|Q6V3B1 MAX "MAX protein" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 73/91 (80%), Positives = 82/91 (90%)

Query:     1 MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKA 59
             MSD++ D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA
Sbjct:     1 MSDND-DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKA 58

Query:    60 ADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
              +YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    59 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 89

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F2Z5K0 MAX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 73/91 (80%), Positives = 82/91 (90%)

Query:     1 MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKA 59
             MSD++ D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA
Sbjct:     1 MSDND-DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKA 58

Query:    60 ADYIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
              +YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    59 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 89

GO:0071339 "MLL1 complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|P52162 MAX "Protein max" [Gallus gallus (taxid:9031)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 70/89 (78%), Positives = 78/89 (87%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query:    62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
             YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    70 YIQYMRRKNHTHQQDIDDLKRQNALLEQQ 98

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0071339 "MLL1 complex" evidence=ISS

UNIPROTKB|E2QZS2 MAX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 70/89 (78%), Positives = 78/89 (87%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query:    62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
             YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    70 YIQYMRRKNHTHQQDIDDLKRQNALLEQQ 98

GO:0071339 "MLL1 complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|P61244 MAX "Protein max" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 70/89 (78%), Positives = 78/89 (87%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query:    62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
             YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    70 YIQYMRRKNHTHQQDIDDLKRQNALLEQQ 98

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048678 "response to axon injury" evidence=IEA

GO:0051402 "neuron apoptotic process" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0071375 "cellular response to peptide hormone stimulus" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003712 "transcription cofactor activity" evidence=TAS

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P61245 MAX "Protein max" [Felis catus (taxid:9685)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 70/89 (78%), Positives = 78/89 (87%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query:    62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
             YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    70 YIQYMRRKNHTHQQDIDDLKRQNALLEQQ 98

GO:0071339 "MLL1 complex" evidence=ISS

RGD|621101 Max "MYC associated factor X" [Rattus norvegicus (taxid:10116)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 70/89 (78%), Positives = 78/89 (87%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query:    62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
             YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    70 YIQYMRRKNHTHQQDIDDLKRQNALLEQQ 98

GO:0003677 "DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;IMP

GO:0006461 "protein complex assembly" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0010243 "response to organic nitrogen" evidence=IEP

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0016605 "PML body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0032403 "protein complex binding" evidence=IDA

GO:0032868 "response to insulin stimulus" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IDA;IPI

GO:0048678 "response to axon injury" evidence=IEP

GO:0051402 "neuron apoptotic process" evidence=IEP

GO:0060041 "retina development in camera-type eye" evidence=IEP

GO:0071339 "MLL1 complex" evidence=ISO;ISS

GO:0071375 "cellular response to peptide hormone stimulus" evidence=IEP

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:96921 Max "Max protein" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 70/89 (78%), Positives = 78/89 (87%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAAD 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +
Sbjct:    11 SDEEQARFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATE 69

Query:    62 YIQFMRRKNASHQQDIDDLKRQNAILEAQ 90
             YIQ+MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct:    70 YIQYMRRKNDTHQQDIDDLKRQNALLEQQ 98

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;IGI

GO:0006461 "protein complex assembly" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=ISO

GO:0016605 "PML body" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0071339 "MLL1 complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52162	MAX_CHICK	No assigned EC number	0.7865	0.9777	0.55	yes	N/A
P52161	MAX_DANRE	No assigned EC number	0.8048	0.8666	0.4727	yes	N/A
P52164	MAX_RAT	No assigned EC number	0.7865	0.9777	0.55	yes	N/A
P91664	MAX_DROME	No assigned EC number	0.5486	0.9888	0.5527	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	90
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	9e-14
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	3e-12
smart00353	53	smart00353, HLH, helix loop helix domain	6e-10

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 59.4 bits (145), Expect = 9e-14
 Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMR 67
          +R  HN  ER+RRD I D+F  LR+ +P+   +K+ S+A+IL+ A +YI+ ++
Sbjct: 1  RRKAHNERERRRRDRINDAFEELRELLPTPPNKKL-SKAEILRLAIEYIKHLQ 52

Length = 52

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 55.7 bits (135), Expect = 3e-12
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNA 71
             +R  HN  ER+RR+ I D+F  LR  +P+L   K  S+A+IL+KA DYI+ ++    
Sbjct: 1  RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 49.5 bits (119), Expect = 6e-10
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 20 NALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
          NA ER+RR  I ++F  LR  +P+L   K  S+A+IL+ A +YI+ ++ +   
Sbjct: 1  NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQK 53

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.77
KOG1319|consensus	229		99.72
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.71
KOG1318|consensus	411		99.7
smart00353	53	HLH helix loop helix domain.	99.61
KOG2483|consensus	232		99.58
KOG0561|consensus	373		99.22
KOG3561|consensus	803		99.14
KOG4304|consensus	250		99.1
KOG3960|consensus	284		99.07
KOG4029|consensus	228		98.93
KOG2588|consensus	953		98.91
PLN03217	93	transcription factor ATBS1; Provisional	98.39
KOG4447|consensus	173		98.13
KOG3898|consensus	254		98.08
KOG3910|consensus	632		98.05
KOG4395|consensus	285		98.03
KOG3582|consensus	856		96.02
KOG4447|consensus	173		93.79
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.42
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	91.61
smart00338	65	BRLZ basic region leucin zipper.	91.51
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	90.3
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.21
KOG3560|consensus	712		89.99
PF14775	60	NYD-SP28_assoc: Sperm tail C-terminal domain	89.87
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	89.82
PHA03386	94	P10 fibrous body protein; Provisional	89.13
KOG3558|consensus	768		88.41
KOG3559|consensus	598		87.39
KOG4343|consensus	655		84.44
smart00340	44	HALZ homeobox associated leucin zipper.	83.71
PRK14127	109	cell division protein GpsB; Provisional	83.61

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.77  E-value=2.3e-18  Score=95.61  Aligned_cols=53  Identities=45%  Similarity=0.747  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhcCCCC--CCcccccHHHHHHHHHHHHHHHH
Q psy14769         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSL--QGEKVASRAQILKKAADYIQFMR   67 (90)
Q Consensus        15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~--~~~~k~sK~~iL~~ai~yIk~L~   67 (90)
                      +|..||..|++||..||.+|+.|+.+||.+  ....+++|++||..||+||++||
T Consensus         1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999999997  24456999999999999999996

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1319|consensus

Probab=99.72  E-value=8.4e-17  Score=108.56  Aligned_cols=76  Identities=33%  Similarity=0.597  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG----EKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~----~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      ..+|.+|...|++||+.||.+|+.|+.|||.|..    +.|++|+.||+++|+||.+|..+....+.++..|++++..|+
T Consensus        60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~  139 (229)
T KOG1319|consen   60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALK  139 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3469999999999999999999999999999863    337999999999999999999999999999999999999886

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.71  E-value=6.1e-17  Score=90.66  Aligned_cols=57  Identities=42%  Similarity=0.679  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769         14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      .+|..|+..|+.||..||.+|+.|+.+||......+++|+.||..|++||+.|+..+
T Consensus         3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999975567999999999999999999764

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>KOG1318|consensus

Probab=99.70  E-value=1.2e-16  Score=118.28  Aligned_cols=86  Identities=23%  Similarity=0.388  Sum_probs=69.2

Q ss_pred             CcCCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHH----------
Q psy14769          4 DERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFMRRKNAS----------   72 (90)
Q Consensus         4 ~~~~~~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L~~~~~~----------   72 (90)
                      .+..++..+..||.+||.+|||||++||++|.+|+.+||.+.. .-++.|+.||..+++||+.|++..++          
T Consensus       222 ~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~  301 (411)
T KOG1318|consen  222 TDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKK  301 (411)
T ss_pred             cccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            3444555668899999999999999999999999999999853 23688999999999999999998774          


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy14769         73 HQQDIDDLKRQNAILEA   89 (90)
Q Consensus        73 l~~~~~~L~~~~~~L~~   89 (90)
                      |+..+..|..+++.|+.
T Consensus       302 le~~n~~L~~rieeLk~  318 (411)
T KOG1318|consen  302 LESTNQELALRIEELKS  318 (411)
T ss_pred             HHhHHHHHHHHHHHHHH
Confidence            33455566666666654

>smart00353 HLH helix loop helix domain

Probab=99.61  E-value=2.2e-15  Score=82.69  Aligned_cols=52  Identities=38%  Similarity=0.638  Sum_probs=47.1

Q ss_pred             HHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHH
Q psy14769         20 NALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNA   71 (90)
Q Consensus        20 n~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~   71 (90)
                      |..||+||..||.+|..|+.+||.+.+..+++|+.||..|++||++|+..+.
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999998655679999999999999999998764

>KOG2483|consensus

Probab=99.58  E-value=7.8e-15  Score=102.18  Aligned_cols=80  Identities=54%  Similarity=0.796  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769         11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ   90 (90)
Q Consensus        11 ~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q   90 (90)
                      .....|..||+.|++||++|++||..|+..||..++.++-.-+.||.+|++||+.|+....+..+.++.|..++..|++|
T Consensus        55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~r  134 (232)
T KOG2483|consen   55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKAR  134 (232)
T ss_pred             CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999999998877444799999999999999999999999999999999888764

>KOG0561|consensus

Probab=99.22  E-value=1.9e-11  Score=87.83  Aligned_cols=77  Identities=34%  Similarity=0.447  Sum_probs=66.0

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAIL   87 (90)
Q Consensus        10 ~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L   87 (90)
                      .+..-+|...|..||+|...||.+|..|+.+||...+.+ +||+.||+.+.+||..|....-++-.+..+|++.+.++
T Consensus        55 ~erRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~~E~  131 (373)
T KOG0561|consen   55 PERRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKTELLPQNGELKRLKLEE  131 (373)
T ss_pred             HHHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhcccccccccchHHHHHhhh
Confidence            344457778899999999999999999999999987655 99999999999999999998888877777777766554

>KOG3561|consensus

Probab=99.14  E-value=7.4e-11  Score=93.50  Aligned_cols=66  Identities=21%  Similarity=0.500  Sum_probs=57.2

Q ss_pred             CcCCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHHHHH
Q psy14769          4 DERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFMRRK   69 (90)
Q Consensus         4 ~~~~~~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L~~~   69 (90)
                      |+.+++..+...|.+||.+||+||+.+|..|++|..+||.+.. ..|++|.+||.+||.+|+.+...
T Consensus         9 d~~~~d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen    9 DDAESDSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             CcccccchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            4445566666789999999999999999999999999999852 36899999999999999998874

>KOG4304|consensus

Probab=99.10  E-value=9.1e-11  Score=82.76  Aligned_cols=61  Identities=21%  Similarity=0.379  Sum_probs=53.0

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-----cccccHHHHHHHHHHHHHHHHHHH
Q psy14769         10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-----EKVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        10 ~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-----~~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      .....++..|-.+||+||+.||.|+++|+.+||..-.     ..|+.|+.||+.|++|++.|+...
T Consensus        27 ~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~   92 (250)
T KOG4304|consen   27 KTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ   92 (250)
T ss_pred             hhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            3445689999999999999999999999999997642     257999999999999999998754

>KOG3960|consensus

Probab=99.07  E-value=9.3e-10  Score=77.33  Aligned_cols=66  Identities=21%  Similarity=0.387  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDID   78 (90)
Q Consensus        12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~   78 (90)
                      ..++|....+.||||-.++|++|+.|+...-++++.. +.|+.||..||+||..||.-++++.+.-.
T Consensus       115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQR-LPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQR-LPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-ccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            4678999999999999999999999999997777666 99999999999999999999888765443

>KOG4029|consensus

Probab=98.93  E-value=8.6e-10  Score=76.57  Aligned_cols=63  Identities=27%  Similarity=0.488  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFMRRKNASHQ   74 (90)
Q Consensus        12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L~~~~~~l~   74 (90)
                      ....|..+|.+||.|-..+|.+|..|+.+||.... .+|+||+.+|..||.||.+|+.-+....
T Consensus       106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~  169 (228)
T KOG4029|consen  106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE  169 (228)
T ss_pred             hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence            35578889999999999999999999999999987 8899999999999999999998766543

>KOG2588|consensus

Probab=98.91  E-value=7.4e-10  Score=88.58  Aligned_cols=66  Identities=33%  Similarity=0.539  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLK   81 (90)
Q Consensus        14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~   81 (90)
                      .+|.+||.+||++|..||+.|.+|+.+||+.  ..|..|..+|..||+||.+|+..+..+.++...++
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~--~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGT--EAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCcc--HhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            6899999999999999999999999999998  44799999999999999999999999998888777

>PLN03217 transcription factor ATBS1; Provisional

Probab=98.39  E-value=1.6e-06  Score=52.03  Aligned_cols=56  Identities=23%  Similarity=0.442  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCC---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         27 RDHIKDSFSSLRDSVPSLQG---EKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKR   82 (90)
Q Consensus        27 R~~i~~~~~~L~~llP~~~~---~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~   82 (90)
                      -+.|++.+..|+.++|....   ..+.|-+-||+.|+.||+.|+.++..|-+.+.+|-.
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~   77 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA   77 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36799999999999998642   346999999999999999999998888877776643

>KOG4447|consensus

Probab=98.13  E-value=1.8e-06  Score=57.02  Aligned_cols=56  Identities=36%  Similarity=0.615  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHH
Q psy14769         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK   69 (90)
Q Consensus        13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~   69 (90)
                      ..+|..||..|++|-..+|++|..|+.++|..+..+ +||.-.|+.|.-||-+|-+-
T Consensus        76 q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~v  131 (173)
T KOG4447|consen   76 QKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQV  131 (173)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhhc
Confidence            348999999999999999999999999999998666 99999999999999887653

>KOG3898|consensus

Probab=98.08  E-value=1.3e-06  Score=61.83  Aligned_cols=56  Identities=29%  Similarity=0.427  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHH
Q psy14769         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR   68 (90)
Q Consensus        13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~   68 (90)
                      ..+|..-|..||+|...+|++|+.|+.+||......|++|..+|..|-+||-.|..
T Consensus        70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~  125 (254)
T KOG3898|consen   70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE  125 (254)
T ss_pred             hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence            55788999999999999999999999999976666679999999999999998875

>KOG3910|consensus

Probab=98.05  E-value=9.3e-06  Score=62.11  Aligned_cols=61  Identities=26%  Similarity=0.332  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCC-CCcccccHHHHHHHHHHHHHHHHHHHHH
Q psy14769         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSL-QGEKVASRAQILKKAADYIQFMRRKNAS   72 (90)
Q Consensus        12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~-~~~~k~sK~~iL~~ai~yIk~L~~~~~~   72 (90)
                      +.+||+..|++||-|-..||++|.+|+.+.-.. ...+--.|..||..||..|-.|++.+++
T Consensus       523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999987543 3344578999999999999999998876

>KOG4395|consensus

Probab=98.03  E-value=8.1e-06  Score=57.74  Aligned_cols=58  Identities=29%  Similarity=0.375  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      ..+|..-|..|++|...+|.+|+.|+.+||.....+++||-..|+.|-.||--|-...
T Consensus       172 ~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l  229 (285)
T KOG4395|consen  172 SHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL  229 (285)
T ss_pred             HhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence            3578899999999999999999999999999988889999999999999998876544

>KOG3582|consensus

Probab=96.02  E-value=0.00094  Score=53.16  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC--CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ--GEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~--~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      .+.++|...|++||.+++-+|+.|-+++....  ...|+++.+.++.++.||..++.+...+..+--.|+.+...+.
T Consensus       650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~  726 (856)
T KOG3582|consen  650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELN  726 (856)
T ss_pred             CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHH
Confidence            57899999999999999999999988875432  2346999999999999999888887776666666666655554

>KOG4447|consensus

Probab=93.79  E-value=0.14  Score=34.11  Aligned_cols=50  Identities=20%  Similarity=0.255  Sum_probs=41.6

Q ss_pred             HHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Q psy14769         22 LERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS   72 (90)
Q Consensus        22 ~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~   72 (90)
                      .|+.|-..+++.|.-|+.++|+.+..+ +++.-.|..+.+||.++.+-..+
T Consensus        29 ~e~~R~~~ls~~s~l~g~l~pgspa~g-k~~~ktlr~~~~~~~~~dE~q~q   78 (173)
T KOG4447|consen   29 KERGRKRRLSDASTLLGKLEPGSPADG-KRGKKTLRIGTDSIQSLDELQKQ   78 (173)
T ss_pred             HHHhHHhhhhhhhhhccccCCCCCCcc-cccccccccCCCchhhHHHHHHH
Confidence            488999999999999999999988666 66666688899999888766553

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.42  E-value=0.48  Score=27.54  Aligned_cols=32  Identities=22%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAIL   87 (90)
Q Consensus        56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L   87 (90)
                      +..||+-|..|+.++.+|+.+...|..++..|
T Consensus        13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L   44 (72)
T PF06005_consen   13 IQQAVETIALLQMENEELKEKNNELKEENEEL   44 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            46788889999998888888755544444444

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.61  E-value=0.81  Score=26.67  Aligned_cols=30  Identities=13%  Similarity=0.257  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         56 LKKAADYIQFMRRKNASHQQDIDDLKRQNA   85 (90)
Q Consensus        56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~   85 (90)
                      ++.||+-|.-||-++.+|.++...|..+.+
T Consensus        13 iqqAvdTI~LLQmEieELKEknn~l~~e~q   42 (79)
T COG3074          13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQ   42 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence            455667776666666666555554444433

>smart00338 BRLZ basic region leucin zipper

Probab=91.51  E-value=0.57  Score=26.16  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         61 DYIQFMRRKNASHQQDIDDLKRQNAIL   87 (90)
Q Consensus        61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L   87 (90)
                      .||..|+..+..|..++..|..++..|
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~l   52 (65)
T smart00338       26 AEIEELERKVEQLEAENERLKKEIERL   52 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555544444444

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=90.30  E-value=1.2  Score=24.81  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         61 DYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      .||..|+..+..|..++..|..++..|.
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~   53 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLK   53 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555444443

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.21  E-value=1.5  Score=26.01  Aligned_cols=31  Identities=13%  Similarity=0.219  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAI   86 (90)
Q Consensus        56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~   86 (90)
                      ++.||+-|.-|+-++.+++.+...|..++..
T Consensus        13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422         13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888888888776666665443

>KOG3560|consensus

Probab=89.99  E-value=0.35  Score=38.22  Aligned_cols=42  Identities=17%  Similarity=0.391  Sum_probs=35.4

Q ss_pred             HhHHHHHHHHHHHHHhhcCCCCCCc-ccccHHHHHHHHHHHHH
Q psy14769         23 ERKRRDHIKDSFSSLRDSVPSLQGE-KVASRAQILKKAADYIQ   64 (90)
Q Consensus        23 Er~RR~~i~~~~~~L~~llP~~~~~-~k~sK~~iL~~ai~yIk   64 (90)
                      -+|-|+.+|.-++.|.+++|-..+- .|++|.+||..++-|++
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR   75 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence            3566889999999999999976532 36999999999999975

>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain

Probab=89.87  E-value=2.2  Score=23.82  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             HHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         34 FSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        34 ~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      +..+..++|..    +..-...|..+.+.=..+-.+...+..+++.|++++.+|+.
T Consensus         3 W~~~~~vip~~----~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~   54 (60)
T PF14775_consen    3 WERLANVIPDE----KIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRS   54 (60)
T ss_pred             HHHHhhcCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888876    35557788888766555556667777888999999988863

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=89.82  E-value=1.5  Score=23.69  Aligned_cols=30  Identities=13%  Similarity=0.192  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         60 ADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      -.|+..|+..+..|..++..|..++..|+.
T Consensus        24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen   24 KQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            457777888888888888888888887764

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PHA03386 P10 fibrous body protein; Provisional

Probab=89.13  E-value=0.9  Score=27.73  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         50 ASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        50 ~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      |||..||..-..-|+.+-.++..++.+++.++.-...|.+
T Consensus         1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa   40 (94)
T PHA03386          1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLEEDSQPLDG   40 (94)
T ss_pred             CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhcchhhhh
Confidence            6889999999999999999999998888888865554443

>KOG3558|consensus

Probab=88.41  E-value=0.86  Score=36.85  Aligned_cols=49  Identities=18%  Similarity=0.330  Sum_probs=38.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhcCCCCC-CcccccHHHHHHHHHHHHH
Q psy14769         16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVASRAQILKKAADYIQ   64 (90)
Q Consensus        16 R~~hn~~Er~RR~~i~~~~~~L~~llP~~~-~~~k~sK~~iL~~ai~yIk   64 (90)
                      |..-.-.-|.||.+=|.-|.+|..+||... ....++|++|+..||-|++
T Consensus        47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR   96 (768)
T KOG3558|consen   47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR   96 (768)
T ss_pred             hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence            444444567789888999999999999543 2336999999999999987

>KOG3559|consensus

Probab=87.39  E-value=0.7  Score=35.49  Aligned_cols=44  Identities=20%  Similarity=0.392  Sum_probs=36.4

Q ss_pred             HHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHH
Q psy14769         22 LERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQF   65 (90)
Q Consensus        22 ~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~   65 (90)
                      .-|.||+.=|.-|.+|..++|.... ...++|++|+..|.-|||-
T Consensus         8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen    8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence            3567888889999999999997641 2249999999999999984

>KOG4343|consensus

Probab=84.44  E-value=1.6  Score=34.58  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769         58 KAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ   90 (90)
Q Consensus        58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q   90 (90)
                      +--+|+..|+..++++..+.+.|++|+..|+.|
T Consensus       299 KKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~q  331 (655)
T KOG4343|consen  299 KKKEYMLGLEARLQALLSENEQLKKENATLKRQ  331 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            345899999999999999999999999999865

>smart00340 HALZ homeobox associated leucin zipper

Probab=83.71  E-value=4.6  Score=21.18  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         65 FMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        65 ~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      +|+.....|-.+...|++++++|++
T Consensus         9 ~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        9 LLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455666666666667777666654

>PRK14127 cell division protein GpsB; Provisional

Probab=83.61  E-value=5.3  Score=25.02  Aligned_cols=37  Identities=22%  Similarity=0.188  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769         54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ   90 (90)
Q Consensus        54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q   90 (90)
                      ..|...++-+..|..++..|+.++..|+.++..++.|
T Consensus        30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~   66 (109)
T PRK14127         30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ   66 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566777777777788888888888888888777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
1an2_A	86	Recognition By Max Of Its Cognate Dna Through A Dim		6e-32
1nlw_B	76	Crystal Structure Of Mad-Max Recognizing Dna Length		2e-31
1nkp_B	83	Crystal Structure Of Myc-Max Recognizing Dna Length		2e-31
1hlo_A	80	The Crystal Structure Of An Intact Human Max-Dna Co		3e-30
1r05_A	87	Solution Structure Of Max B-Hlh-Lz Length = 87		8e-30
1nkp_A	88	Crystal Structure Of Myc-Max Recognizing Dna Length		4e-08
1a93_B	34	Nmr Solution Structure Of The C-Myc-Max Heterodimer		7e-06
1an4_A	65	Structure And Function Of The BHLHZ DOMAIN OF USF L		1e-05
1am9_A	82	Human Srebp-1a Bound To Ldl Receptor Promoter Lengt		4e-05
3u5v_A	76	Crystal Structure Of Max-E47 Length = 76		1e-04

>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric BHLHZ DOMAIN Length = 86

Iteration: 1
 Score =  132 bits (331), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 72/78 (92%), Gaps = 1/78 (1%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
          A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN +
Sbjct: 1  ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHT 59
Query: 73 HQQDIDDLKRQNAILEAQ 90
          HQQDIDDLKRQNA+LE Q
Sbjct: 60 HQQDIDDLKRQNALLEQQ 77

>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna Length = 76

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 70/76 (92%), Gaps = 1/76 (1%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQ 74
          KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN +HQ
Sbjct: 1  KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQ 59
Query: 75 QDIDDLKRQNAILEAQ 90
          QDIDDLKRQNA+LE Q
Sbjct: 60 QDIDDLKRQNALLEQQ 75

>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna Length = 83

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/77 (85%), Positives = 71/77 (92%), Gaps = 1/77 (1%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASH 73
          +KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN +H
Sbjct: 1  DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH 59
Query: 74 QQDIDDLKRQNAILEAQ 90
          QQDIDDLKRQNA+LE Q
Sbjct: 60 QQDIDDLKRQNALLEQQ 76

>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex: New Insights Into Mechanisms Of Transcriptional Control Length = 80

Iteration: 1
 Score =  126 bits (316), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 72/79 (91%), Gaps = 2/79 (2%)
Query: 7  DYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQF 65
          D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+
Sbjct: 3  DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQY 61
Query: 66 MRRKNASHQQDIDDLKRQN 84
          MRRKN +HQQDIDDLKRQN
Sbjct: 62 MRRKNHTHQQDIDDLKRQN 80

>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz Length = 87

Iteration: 1
 Score =  125 bits (313), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 70/78 (89%), Gaps = 1/78 (1%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
          A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRK  +
Sbjct: 2  ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKVHT 60
Query: 73 HQQDIDDLKRQNAILEAQ 90
           QQDIDDLKRQNA+LE Q
Sbjct: 61 LQQDIDDLKRQNALLEQQ 78

>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna Length = 88

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYI 63
          KR  HN LER+RR+ +K SF +LRD +P L+  + A +  ILKKA  YI
Sbjct: 6  KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYI 54

>pdb|1A93|B Chain B, Nmr Solution Structure Of The C-Myc-Max Heterodimeric Leucine Zipper, Nmr, Minimized Average Structure Length = 34

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/25 (84%), Positives = 23/25 (92%)
Query: 66 MRRKNASHQQDIDDLKRQNAILEAQ 90
          MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct: 5  MRRKNDTHQQDIDDLKRQNALLEQQ 29

>pdb|1AN4|A Chain A, Structure And Function Of The BHLHZ DOMAIN OF USF Length = 65

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVP--SLQGEKVA-SRAQILKKAADYIQFMRRKN 70
          ++RA HN +ER+RRD I +    L   +P  S++  K   S+  IL KA+DYIQ +R+ N
Sbjct: 4  KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63

>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter Length = 82

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
           EKR  HNA+E++ R  I D    L+D V   + +   +++ +L+KA DYI+F++  N  
Sbjct: 4  GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAK--LNKSAVLRKAIDYIRFLQHSNQK 61
Query: 73 HQQD 76
           +Q+
Sbjct: 62 LKQE 65

>pdb|3U5V|A Chain A, Crystal Structure Of Max-E47 Length = 76

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 12 SAEKRAHHNALERKRRDHIKDSFSSL-RDSVPSLQGEKVASRAQILKKAADYI 63
           A+KRAHHNALERKRR  I ++F  L R     L+ +K  ++  IL++A   I
Sbjct: 2  GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVI 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	2e-23
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	1e-22
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	2e-22
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	1e-18
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	3e-16
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	5e-15
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	2e-07
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	2e-06
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	3e-05
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	4e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04
1a0a_A	63	BHLH, protein (phosphate system positive regulator	5e-04

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 84.7 bits (210), Expect = 2e-23
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query: 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN 70
              KR  HN LER+RR+ +K SF +LRD +P L+  + A +  ILKKA  YI  ++ + 
Sbjct: 2  HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEE 61

Query: 71 ASHQQDIDDLKRQNAILEAQ 90
               + D L+++   L+ +
Sbjct: 62 QKLISEEDLLRKRREQLKHK 81

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 82.0 bits (203), Expect = 1e-22
 Identities = 63/72 (87%), Positives = 67/72 (93%), Gaps = 1/72 (1%)

Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
          A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN +
Sbjct: 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHT 68

Query: 73 HQQDIDDLKRQN 84
          HQQDIDDLKRQN
Sbjct: 69 HQQDIDDLKRQN 80

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 81.7 bits (202), Expect = 2e-22
 Identities = 65/77 (84%), Positives = 70/77 (90%), Gaps = 1/77 (1%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASH 73
          +KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK  SRAQIL KA +YIQ+MRRKN +H
Sbjct: 1  DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTH 59

Query: 74 QQDIDDLKRQNAILEAQ 90
          QQDIDDLKRQNA+LE Q
Sbjct: 60 QQDIDDLKRQNALLEQQ 76

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 71.8 bits (176), Expect = 1e-18
 Identities = 21/75 (28%), Positives = 36/75 (48%)

Query: 16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQ 75
          R+ HN +E+ RR H++ S   L+  VP        +   +L KA  +I+ +   +     
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61

Query: 76 DIDDLKRQNAILEAQ 90
           ID L+R+   L+ Q
Sbjct: 62 QIDQLQREQRHLKRQ 76

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 65.9 bits (161), Expect = 3e-16
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
           EKR  HNA+E++ R  I D    L+D V   + +   +++ +L+KA DYI+F++  N  
Sbjct: 4  GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAK--LNKSAVLRKAIDYIRFLQHSNQK 61

Query: 73 HQQDIDDLKRQNAILEA 89
           +Q+   L+      ++
Sbjct: 62 LKQENLSLRTAVHKSKS 78

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 62.3 bits (152), Expect = 5e-15
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVA---SRAQILKKAADYIQFMRRKN 70
          ++RA HN +ER+RRD I +    L   +P    E      S+  IL KA+DYIQ +R+ N
Sbjct: 4  KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63

Query: 71 A 71
           
Sbjct: 64 H 64

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76

 Score = 43.7 bits (103), Expect = 2e-07
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 12 SAEKRAHHNALERKRRDHIKDSFSSL-RDSVPSLQGEKVASRAQILKKAADYI----QFM 66
           A+KRAHHNALERKRR  I ++F  L R     L+ +K  ++  IL++A   I    Q +
Sbjct: 2  GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQV 61

Query: 67 RRKNASHQQD 76
          R +N +    
Sbjct: 62 RERNLNPLNH 71

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60

 Score = 40.3 bits (95), Expect = 2e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR 68
          +R   NA ER R   +  +  +LR  VP     +  S+ + L+ A +YI  +  
Sbjct: 2  RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSE 55

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68

 Score = 37.4 bits (87), Expect = 3e-05
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR 68
          +A++R      ER+R   + ++F +L+ S  S   +++  + +IL+ A  YI+ ++ 
Sbjct: 9  NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQA 64

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B Length = 34

 Score = 36.6 bits (84), Expect = 4e-05
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query: 66 MRRKNASHQQDIDDLKRQNAILEAQ 90
          MRRKN +HQQDIDDLKRQNA+LE Q
Sbjct: 5  MRRKNDTHQQDIDDLKRQNALLEQQ 29

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 12/37 (32%)

Query: 23 ERKRRDHIKDSFSSLR----DSVPSLQGEKVASRAQI 55
          E++    +K   +SL+    DS P+L     A +A +
Sbjct: 18 EKQA---LKKLQASLKLYADDSAPAL-----AIKATM 46

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 34.4 bits (79), Expect = 5e-04
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK----VASRAQILKKAADYIQFMRRKN 70
          KR  H   E+ RR+ +  +   L   +P+   ++      S+A  ++ A  YI+ +++  
Sbjct: 2  KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61

Query: 71 AS 72
          ++
Sbjct: 62 ST 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.92
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.91
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.9
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.89
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.88
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.85
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.8
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.79
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.76
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.74
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.74
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.73
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.69
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	99.52
4ath_A	83	MITF, microphthalmia-associated transcription fact	99.51
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	99.34
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.32
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	99.28
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	93.81
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	93.37
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	93.37
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	93.28
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	93.15
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	92.52
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.98
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	91.68
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	91.57
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	91.35
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	91.16
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	91.11
3m48_A	33	General control protein GCN4; leucine zipper, synt	90.76
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	90.73
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	90.69
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	89.95
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	89.78
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	89.47
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	89.36
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	89.16
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	88.67
2hy6_A	34	General control protein GCN4; protein design, para	87.39
1uo4_A	34	General control protein GCN4; four helix bundle, c	86.75
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	86.57
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	86.52
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	86.29
2bni_A	34	General control protein GCN4; four helix bundle, a	86.18
3w03_C	184	DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS	83.76
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	83.56
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	83.21
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	83.14
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	83.02
2wuj_A	57	Septum site-determining protein diviva; bacterial	82.98
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	82.73
3ra3_A	28	P1C; coiled coil domain, fiber, KIH interactions,	82.14
3v86_A	27	De novo design helix; computational design of A pr	82.0

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.92  E-value=1.1e-24  Score=131.19  Aligned_cols=79  Identities=35%  Similarity=0.539  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        11 ~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      ++..+|.+||.+||+||..||++|..|+.+||.+++..|+||++||..||+||++|+..+..+..+++.|+.++..|++
T Consensus         2 ed~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~   80 (88)
T 1nkp_A            2 HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKH   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677999999999999999999999999999998766789999999999999999999999998888888888888765

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.91  E-value=4.5e-24  Score=126.49  Aligned_cols=76  Identities=28%  Similarity=0.407  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ   90 (90)
Q Consensus        15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q   90 (90)
                      +|.+||.+||+||..||.||..|+++||..++..|+||++||.+|++||+.|+..+..+..+++.|+.++..|+++
T Consensus         1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~   76 (80)
T 1nlw_A            1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ   76 (80)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999999999987777899999999999999999999999999999999999999763

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.90  E-value=1.1e-23  Score=125.47  Aligned_cols=75  Identities=87%  Similarity=1.186  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ   90 (90)
Q Consensus        15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q   90 (90)
                      +|.+||.+||+||..||.+|..|+.+||.+++. |+||++||..||+||+.|+..+..++.+++.|+.++..|+++
T Consensus         2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~-k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~   76 (83)
T 1nkp_B            2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ   76 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999997654 499999999999999999999999999999999999998763

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.89  E-value=1.9e-23  Score=123.66  Aligned_cols=74  Identities=84%  Similarity=1.147  Sum_probs=67.7

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQN   84 (90)
Q Consensus        10 ~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~   84 (90)
                      .+...+|.+||.+||+||..||.+|..|+.+||.+.+. |+||+.||..||+||++|+..+..|..+++.|++++
T Consensus         7 ~~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~-k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~n   80 (80)
T 1hlo_A            7 ESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN   80 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             cchHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44567999999999999999999999999999998654 599999999999999999999999999999998763

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.88  E-value=6.8e-22  Score=117.55  Aligned_cols=75  Identities=32%  Similarity=0.489  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      ...+|.+||.+||+||..||.+|..|+.+||++  ..+++|++||..||+||++|+..+..|..++..|+..++..+
T Consensus         3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~   77 (82)
T 1am9_A            3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456899999999999999999999999999986  457999999999999999999999999999999999888754

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.85  E-value=3.6e-21  Score=121.25  Aligned_cols=85  Identities=26%  Similarity=0.352  Sum_probs=51.9

Q ss_pred             cCCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy14769          5 ERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFMRRKNASHQQD-------   76 (90)
Q Consensus         5 ~~~~~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~-------   76 (90)
                      +.........+|.+||.+||+||+.||.+|..|+.+||.+.+ ..|++|++||..||+||++|+..+..+...       
T Consensus        17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l   96 (118)
T 4ati_A           17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKL   96 (118)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344556789999999999999999999999999999864 346999999999999999999999888754       


Q ss_pred             ---HHHHHHHHHHHhh
Q psy14769         77 ---IDDLKRQNAILEA   89 (90)
Q Consensus        77 ---~~~L~~~~~~L~~   89 (90)
                         ...|..++++|+.
T Consensus        97 ~~~n~~L~~riqeLE~  112 (118)
T 4ati_A           97 EHANRHLLLRVQELEM  112 (118)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence               3345555555554

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.80  E-value=2.5e-19  Score=103.76  Aligned_cols=63  Identities=24%  Similarity=0.364  Sum_probs=55.0

Q ss_pred             chhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Q psy14769          9 DIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASH   73 (90)
Q Consensus         9 ~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l   73 (90)
                      +..+..+|.+||.+||+||+.||.+|.+|+.+||+.  ..|++|++||..||+||+.|+....=+
T Consensus         2 d~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~--~~K~dK~sIL~~aI~yik~Lq~~~~~~   64 (71)
T 4h10_B            2 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN--ARKMDKSTVLQKSIDFLRKHKEITAWL   64 (71)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC--CSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC--CCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence            345678999999999999999999999999999965  447999999999999999999876543

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.79  E-value=5.1e-20  Score=108.03  Aligned_cols=62  Identities=37%  Similarity=0.551  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPS-LQGEKVASRAQILKKAADYIQFMRRKNASHQ   74 (90)
Q Consensus        13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~-~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~   74 (90)
                      ..+|.+||.+||+||..||.+|..|+.+||. ..+.+..||++||..||+||++|++.++++.
T Consensus         3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A            3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5689999999999999999999999999995 4444544899999999999999999888753

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.76  E-value=2.8e-18  Score=96.54  Aligned_cols=56  Identities=27%  Similarity=0.388  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      +|..||..||+|+..||.+|+.|+.+||..+..+|+||+.||..|++||..|++.+
T Consensus         2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L   57 (60)
T 2ql2_B            2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999877788999999999999999999754

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.74  E-value=1e-19  Score=103.69  Aligned_cols=57  Identities=42%  Similarity=0.640  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCc---ccccHHHHHHHHHHHHHHHHHHH
Q psy14769         14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGE---KVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~---~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      .+|.+||.+|++||..||.+|.+|+.+||.+.+.   .+++|++||..||+||++|+..+
T Consensus         4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            3678999999999999999999999999998643   36999999999999999998754

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.74  E-value=1.4e-17  Score=95.72  Aligned_cols=59  Identities=24%  Similarity=0.406  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769         11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        11 ~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      ....+|..||..||+|+..||++|+.|+.+||..+ ..|+||+.||..||+||.+|++.+
T Consensus         8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A            8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999876 456999999999999999998743

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.73  E-value=3.2e-19  Score=101.25  Aligned_cols=56  Identities=23%  Similarity=0.426  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCC----cccccHHHHHHHHHHHHHHHHHHH
Q psy14769         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQG----EKVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~----~~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      +|.+|+.+||+||+.||.+|.+|+.+||.+..    ..++||++||..||+||++|++.+
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999997631    346999999999999999998753

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.69  E-value=2.9e-17  Score=95.60  Aligned_cols=57  Identities=21%  Similarity=0.399  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC-CcccccHHHHHHHHHHHHHHHHH
Q psy14769         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVASRAQILKKAADYIQFMRR   68 (90)
Q Consensus        12 ~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~-~~~k~sK~~iL~~ai~yIk~L~~   68 (90)
                      -..+|.+|+.+||+||+.||.+|.+|+.+||.+. ...|++|++||..||+||+.|+.
T Consensus         6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            4568999999999999999999999999999874 23579999999999999999864

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=5e-15  Score=84.59  Aligned_cols=49  Identities=24%  Similarity=0.365  Sum_probs=45.7

Q ss_pred             HHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHH
Q psy14769         20 NALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRR   68 (90)
Q Consensus        20 n~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~   68 (90)
                      +..||+|+..||.+|+.|+.+||..+..+|+||+.||..||+||..|+.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            4679999999999999999999999888899999999999999999984

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=99.51  E-value=1.1e-13  Score=81.88  Aligned_cols=63  Identities=24%  Similarity=0.309  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhhcCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhh
Q psy14769         27 RDHIKDSFSSLRDSVPSLQ-GEKVASRAQILKKAADYIQFMRRKNASHQQDID----------DLKRQNAILEA   89 (90)
Q Consensus        27 R~~i~~~~~~L~~llP~~~-~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~----------~L~~~~~~L~~   89 (90)
                      |.+||++|.+|+.+||.+. ...+++|++||.+||+||++|++++..+.++..          .|-.++++|+-
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~   77 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEM   77 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            7899999999999999864 234799999999999999999988887765554          44446666653

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=99.34  E-value=3.4e-12  Score=77.48  Aligned_cols=57  Identities=26%  Similarity=0.349  Sum_probs=46.3

Q ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Q psy14769         16 RAHHNAL-ERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS   72 (90)
Q Consensus        16 R~~hn~~-Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~   72 (90)
                      |..++.. |++|...||.+|+.|+.+||..+..+|+||+.||..||+||..|+..+..
T Consensus        25 R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           25 RSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            3334433 57899999999999999999988778899999999999999999987654

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.32  E-value=1.9e-12  Score=93.07  Aligned_cols=60  Identities=23%  Similarity=0.392  Sum_probs=42.1

Q ss_pred             cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHH
Q psy14769          8 YDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK   69 (90)
Q Consensus         8 ~~~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~   69 (90)
                      ++.....+|.+||.+||+||+.||..|.+|+.+||..  ..|++|++||..||.||+.++.-
T Consensus         5 ~~~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~--~~~~dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A            5 EDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN--ARKMDKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHTCCSS--SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCC--CCCcCHHHHHHHHHHHHHHHHhh
Confidence            4445567899999999999999999999999999943  45799999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.28  E-value=2.3e-12  Score=93.58  Aligned_cols=59  Identities=20%  Similarity=0.362  Sum_probs=50.5

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC-CcccccHHHHHHHHHHHHHHHHH
Q psy14769         10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVASRAQILKKAADYIQFMRR   68 (90)
Q Consensus        10 ~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~-~~~k~sK~~iL~~ai~yIk~L~~   68 (90)
                      .....+|.+||.+||+||+.||..|.+|+.+||.+. ...|++|++||..||.||+.|+.
T Consensus         8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B            8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred             chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence            344568999999999999999999999999999753 23579999999999999999874

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=93.81  E-value=0.18  Score=26.93  Aligned_cols=29  Identities=14%  Similarity=0.249  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         61 DYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      .||..|+..+..|+.++..|..++..|+.
T Consensus        22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~   50 (55)
T 1dh3_A           22 EYVKSLENRVAVLENQNKTLIEELKALKD   50 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999998875

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=93.37  E-value=0.12  Score=23.40  Aligned_cols=27  Identities=37%  Similarity=0.473  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      |..|.+.+..+.+++..|.-++..|++
T Consensus         2 irrlkqknarlkqeiaaleyeiaaleq   28 (28)
T 3ra3_B            2 IRRLKQKNARLKQEIAALEYEIAALEQ   28 (28)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence            567889999999999999999888864

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=93.37  E-value=0.19  Score=31.88  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=32.1

Q ss_pred             HHHHHHHHhhcCCCCCC-cccccHHHHHHHHHHHHHHH
Q psy14769         30 IKDSFSSLRDSVPSLQG-EKVASRAQILKKAADYIQFM   66 (90)
Q Consensus        30 i~~~~~~L~~llP~~~~-~~k~sK~~iL~~ai~yIk~L   66 (90)
                      |.-+|+.|..++|-.++ ..++.|-.||.+|.+++..|
T Consensus        96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~  133 (138)
T 3muj_A           96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL  133 (138)
T ss_dssp             HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence            67799999999998763 45799999999999998876

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=93.28  E-value=0.35  Score=26.53  Aligned_cols=33  Identities=12%  Similarity=0.062  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769         58 KAADYIQFMRRKNASHQQDIDDLKRQNAILEAQ   90 (90)
Q Consensus        58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~q   90 (90)
                      +-.+|+..|+..+..|..+...|..++..|+.+
T Consensus        27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~   59 (63)
T 2dgc_A           27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKL   59 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345788888888888888888888888888754

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=93.15  E-value=0.065  Score=28.63  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         64 QFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        64 k~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      ..|+.++.+|+.+++.|..+++.|++
T Consensus        22 eaLk~E~~eLk~k~~~L~~~~~el~~   47 (53)
T 2yy0_A           22 ELLRLELAEMKEKYEAIVEENKKLKA   47 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777777777654

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=92.52  E-value=0.21  Score=28.09  Aligned_cols=28  Identities=11%  Similarity=0.107  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         61 DYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      .||+.|+..+..++.....|..++..|+
T Consensus        29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr   56 (70)
T 1gd2_E           29 DHLKALETQVVTLKELHSSTTLENDQLR   56 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555544444444444443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.98  E-value=0.6  Score=26.99  Aligned_cols=31  Identities=13%  Similarity=0.219  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         56 LKKAADYIQFMRRKNASHQQDIDDLKRQNAI   86 (90)
Q Consensus        56 L~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~   86 (90)
                      ++.||+-|.-|+-++.+|+.+...|..+++.
T Consensus        15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A           15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888888888777775555544

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=91.68  E-value=0.49  Score=25.75  Aligned_cols=29  Identities=10%  Similarity=0.140  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         60 ADYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      .+||..|+..+..|..+...|..++..|+
T Consensus        22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~   50 (63)
T 2wt7_A           22 RELTDTLQAETDQLEDEKSALQTEIANLL   50 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555555555555555555555555443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=91.57  E-value=0.51  Score=25.53  Aligned_cols=29  Identities=14%  Similarity=0.190  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         60 ADYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        60 i~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      .+||..|+..+..|..+...|..++..|+
T Consensus        21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~   49 (62)
T 1jnm_A           21 LERIARLEEKVKTLKAQNSELASTANMLR   49 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555566665555555555555555544

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=91.35  E-value=0.64  Score=22.45  Aligned_cols=27  Identities=11%  Similarity=0.058  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      +.+|+.++.+|-.+...|..++..|+.
T Consensus         3 MnQLE~kVEeLl~~n~~Le~eV~rLk~   29 (34)
T 2oxj_A            3 MXQLEXKVXELLXKNXHLEXEVXRLKX   29 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            567888888888888888888888763

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=91.16  E-value=0.66  Score=22.66  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      +.+|+..+++|-.+...|..++..|+
T Consensus         3 MnQLE~KVEeLl~~~~~Le~eV~RLk   28 (36)
T 1kd8_B            3 VKQLKAKVEELKSKLWHLKNKVARLK   28 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            56788888888888888888887776

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=91.11  E-value=0.23  Score=24.15  Aligned_cols=26  Identities=81%  Similarity=1.023  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy14769         65 FMRRKNASHQQDIDDLKRQNAILEAQ   90 (90)
Q Consensus        65 ~L~~~~~~l~~~~~~L~~~~~~L~~q   90 (90)
                      ++..++...++.+++|++++..|+.|
T Consensus         4 ~mRrKn~a~qqDIddlkrQN~~Le~Q   29 (34)
T 1a93_B            4 GMRRKNDTHQQDIDDLKRQNALLEQQ   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhhHhhHhhHHHHHHHHHHHHHH
Confidence            35567777777788888777777654

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=90.76  E-value=0.43  Score=22.95  Aligned_cols=26  Identities=15%  Similarity=0.031  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         64 QFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        64 k~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      .+|+.++.+|-.+...|..++..|+.
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            46888888888888888888888763

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=90.73  E-value=0.42  Score=25.37  Aligned_cols=21  Identities=5%  Similarity=0.142  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy14769         69 KNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        69 ~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      ++..|+.++..|+.++..|.+
T Consensus        20 d~eaLk~E~~eLk~k~~~L~~   40 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVE   40 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            455555666666666555543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=90.69  E-value=0.71  Score=24.84  Aligned_cols=27  Identities=15%  Similarity=0.229  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         61 DYIQFMRRKNASHQQDIDDLKRQNAIL   87 (90)
Q Consensus        61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L   87 (90)
                      .|+..|+..+..|..+...|..++..|
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L   48 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLL   48 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555444444444444444443

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=89.95  E-value=0.92  Score=21.75  Aligned_cols=26  Identities=8%  Similarity=0.050  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      +.+|+.+++++-.+...|..++..|+
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk   27 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIK   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            46788888888888888888888776

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=89.78  E-value=0.94  Score=22.91  Aligned_cols=27  Identities=19%  Similarity=0.416  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      .+.|+..+.+|++.+..|..++.-|++
T Consensus        12 ~k~le~~naeLEervstLq~EN~mLRq   38 (42)
T 2oqq_A           12 VKDLENKNSELEERLSTLQNENQMLRH   38 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            445555566666666666666666654

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=89.47  E-value=0.69  Score=22.60  Aligned_cols=26  Identities=15%  Similarity=0.221  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      +++|..++.++..++..|..++..|+
T Consensus         3 MnQLE~kVEeLl~~~~~Le~EV~RL~   28 (36)
T 1kd8_A            3 VKQLEAEVEEIESEVWHLENEVARLE   28 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45677777777777777777777765

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=89.36  E-value=1.2  Score=22.54  Aligned_cols=29  Identities=10%  Similarity=0.256  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         61 DYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      .|+..|+...+.++..+.+|..++..|+.
T Consensus         3 aYl~eLE~r~k~le~~naeLEervstLq~   31 (42)
T 2oqq_A            3 AYLSELENRVKDLENKNSELEERLSTLQN   31 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48888999999999999999888887753

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=89.16  E-value=1.1  Score=21.49  Aligned_cols=26  Identities=12%  Similarity=0.023  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      +++|+.+++++-.++..|..++..|+
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~   27 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNT   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            46788888888888888888888776

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=88.67  E-value=1.2  Score=21.43  Aligned_cols=27  Identities=7%  Similarity=0.076  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      +.+|+.++++|-.+...|..++..|+.
T Consensus         3 MnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            3 MXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            567888888888888888888887763

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=87.39  E-value=1.2  Score=21.50  Aligned_cols=27  Identities=11%  Similarity=-0.007  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      +++|..++++|-.+...|..++..|+.
T Consensus         3 MnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            3 VKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            467788888888888888888877763

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=86.75  E-value=1.3  Score=21.32  Aligned_cols=27  Identities=7%  Similarity=0.147  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      +.+|+.+++++-.+...|..++..|+.
T Consensus         3 M~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            3 MKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            467888888888888888888887763

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=86.57  E-value=1.5  Score=23.77  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         62 YIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        62 yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      -+..|...+.+|..++..|..++..|+
T Consensus        31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk   57 (63)
T 1ci6_A           31 ECKELEKKNEALKERADSLAKEIQYLK   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666666664

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=86.52  E-value=2.7  Score=24.28  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         54 QILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        54 ~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      .-|..|++=-+.|...+..++.++..|+.++..|+
T Consensus        39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~   73 (83)
T 1uii_A           39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELA   73 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777788888888888888888888887775

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=86.29  E-value=1.6  Score=20.33  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      |-.|.++...+..++..|+-++..|++
T Consensus         4 iaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            4 IAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            556778888888888888888887764

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=86.18  E-value=1.5  Score=21.15  Aligned_cols=27  Identities=7%  Similarity=0.005  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      +.+|+.++.++-.+...|..++..|+.
T Consensus         3 MnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            3 MKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            467888888888888888888887763

>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}

Probab=83.76  E-value=3  Score=27.50  Aligned_cols=38  Identities=18%  Similarity=0.123  Sum_probs=29.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         51 SRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        51 sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      .-..++.-+++.+..|+..+..|+++.+.|..+-....
T Consensus       142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l  179 (184)
T 3w03_C          142 VIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQ  179 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557778888888888888888888888888766543

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=83.56  E-value=4.9  Score=23.99  Aligned_cols=19  Identities=21%  Similarity=0.268  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy14769         70 NASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        70 ~~~l~~~~~~L~~~~~~L~   88 (90)
                      +.+|+.+++.|+.+++.|.
T Consensus        67 v~eLe~everL~~ENq~L~   85 (104)
T 3s9g_A           67 VRELELELDRLRAENLQLL   85 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4445555666666665554

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=83.21  E-value=2.7  Score=20.24  Aligned_cols=27  Identities=7%  Similarity=-0.013  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         63 IQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        63 Ik~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      +++|..+++++-.+...|..++..|+.
T Consensus         3 MnQledKvEel~~~~~~l~nEv~Rl~~   29 (34)
T 2r2v_A            3 LKQVADKLEEVASKLYHNANELARVAK   29 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            567888888888888888888887763

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=83.14  E-value=3.9  Score=22.09  Aligned_cols=31  Identities=10%  Similarity=0.067  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         59 AADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        59 ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      -.+++..|+..+..|..++..|..++..|+.
T Consensus        21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~   51 (63)
T 1ci6_A           21 KRAEQEALTGECKELEKKNEALKERADSLAK   51 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467788888888888888888888887764

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=83.02  E-value=4.2  Score=23.48  Aligned_cols=36  Identities=17%  Similarity=0.233  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14769         53 AQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILE   88 (90)
Q Consensus        53 ~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~   88 (90)
                      -.-|..|.+=-..|+..+..++.++..|+.++..|+
T Consensus        30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~   65 (83)
T 1wlq_A           30 RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA   65 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345777888888888888888888888888888775

>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A

Probab=82.98  E-value=1.9  Score=22.90  Aligned_cols=29  Identities=10%  Similarity=0.240  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         61 DYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        61 ~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      +|+..+-.....+..++..|+.++..|+.
T Consensus        27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~   55 (57)
T 2wuj_A           27 EFLAQVRKDYEIVLRKKTELEAKVNELDE   55 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556666666666666666666666654

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=82.73  E-value=4  Score=21.86  Aligned_cols=32  Identities=16%  Similarity=0.268  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         58 KAADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        58 ~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      ..-+-+..|...+..|..++..|..++..|+.
T Consensus        26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~   57 (62)
T 1jnm_A           26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQ   57 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344677889999999999999999988865

>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=82.14  E-value=1.9  Score=19.40  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         65 FMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        65 ~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      .|+=++..+++.+..|++.+..|++
T Consensus         4 alefendaleqkiaalkqkiaslkq   28 (28)
T 3ra3_A            4 ALEFENDALEQKIAALKQKIASLKQ   28 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHhccHHHHHHHHHHHHHHHHhcC
Confidence            3555677888888888888887763

>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}

Probab=82.00  E-value=2.4  Score=18.88  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         62 YIQFMRRKNASHQQDIDDLKRQNAIL   87 (90)
Q Consensus        62 yIk~L~~~~~~l~~~~~~L~~~~~~L   87 (90)
                      |+-+|..++-++.-++..|+-++.-|
T Consensus         1 yvyqlkdevgelkgevralkdevkdl   26 (27)
T 3v86_A            1 YVYQLKDEVGELKGEVRALKDEVKDL   26 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHhHHHHHHHHHhcc
Confidence            45567777777777777777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	4e-14
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	5e-14
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	2e-12
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	2e-10
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	8e-10
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	5e-09
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	2e-07
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	3e-07

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 4e-14
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQ 74
          KR  HN LER+RR+ +K SF +LRD +P L+  + A +  ILKKA  YI  ++ +     
Sbjct: 6  KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65

Query: 75 QDIDDLKRQNAILEAQ 90
           + D L+++   L+ +
Sbjct: 66 SEEDLLRKRREQLKHK 81

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 5e-14
 Identities = 66/77 (85%), Positives = 71/77 (92%), Gaps = 1/77 (1%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASH 73
          +KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK ASRAQIL KA +YIQ+MRRKN +H
Sbjct: 1  DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTH 59

Query: 74 QQDIDDLKRQNAILEAQ 90
          QQDIDDLKRQNA+LE Q
Sbjct: 60 QQDIDDLKRQNALLEQQ 76

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 2e-12
 Identities = 21/75 (28%), Positives = 36/75 (48%)

Query: 16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQ 75
          R+ HN +E+ RR H++ S   L+  VP        +   +L KA  +I+ +   +     
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61

Query: 76 DIDDLKRQNAILEAQ 90
           ID L+R+   L+ Q
Sbjct: 62 QIDQLQREQRHLKRQ 76

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 2e-10
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVA---SRAQILKKAADYIQFMRRKN 70
          ++RA HN +ER+RRD I +    L   +P    E      S+  IL KA+DYIQ +R+ N
Sbjct: 4  KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63

Query: 71 A 71
           
Sbjct: 64 H 64

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (114), Expect = 8e-10
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKV----ASRAQILKKAADYIQFMRRKN 70
          KR  H   E+ RR+ +  +   L   +P+   ++      S+A  ++ A  YI+ +++  
Sbjct: 2  KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61

Query: 71 AS 72
          ++
Sbjct: 62 ST 63

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (109), Expect = 5e-09
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRK 69
           +A++R      ER+R   + ++F +L+ S  S    +   + +IL+ A  YI+ ++  
Sbjct: 8  TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQAL 65

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 2e-07
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 27 RDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNA 85
          R  I D    L+D V     +    ++ +L+KA DYI+++++ N   +Q+   LK  N 
Sbjct: 1  RSSINDKIIELKDLVMG--TDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ 57

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 3e-07
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNAS 72
           EKR  HNA+E++ R  I D    L+D V   +     +++ +L+KA DYI+F++  N  
Sbjct: 4  GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTE--AKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 73 HQQDIDDLKRQNAILE 88
           +Q+   L+      +
Sbjct: 62 LKQENLSLRTAVHKSK 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.89
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.8
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.74
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.72
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=122.51  Aligned_cols=75  Identities=27%  Similarity=0.401  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      .|.+||.+||+||..||++|+.|+++||++++..|+||++||..||+||+.|+..+..+..+++.|..++..|+.
T Consensus         1 ~R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~   75 (79)
T d1nlwa_           1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR   75 (79)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999999999998777779999999999999999999999999999999999999875

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.1e-23  Score=122.60  Aligned_cols=77  Identities=36%  Similarity=0.557  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      ..+|.+||.+||+||..||++|+.|+.+||+.+...++||++||..|++||++|+..+..+..+++.|+.++..|..
T Consensus         4 ~~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~   80 (88)
T d1nkpa_           4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKH   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999998766789999999999999999999999999999999988887764

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.9e-23  Score=119.76  Aligned_cols=75  Identities=85%  Similarity=1.186  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      ++|.+||.+||+||..||++|..|+++||++++. ++||++||..||+||+.|+..+..+..+++.|..++..|..
T Consensus         1 ~rR~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~-k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~   75 (83)
T d1nkpb_           1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGE-KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQ   75 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999999987655 59999999999999999999999999999999998888765

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.4e-22  Score=116.37  Aligned_cols=75  Identities=32%  Similarity=0.495  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14769         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAILEA   89 (90)
Q Consensus        13 ~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~L~~   89 (90)
                      ..+|.+||.+||+||..||++|..|+++||++  ..++||++||..||+||+.|+..+..|..++..|+.++..+++
T Consensus         4 ~~kR~~H~~~Er~RR~~in~~~~~L~~llP~~--~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~~   78 (80)
T d1am9a_           4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKS   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            46899999999999999999999999999987  3479999999999999999999999999999999998887653

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=8.2e-20  Score=103.74  Aligned_cols=60  Identities=23%  Similarity=0.395  Sum_probs=54.1

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769         10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        10 ~~~~~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      .....+|..||..||+||..||.+|..|+.+||++++. ++||++||..||+||++|++.+
T Consensus         7 ~~~~~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~-k~sK~~iL~~Ai~YI~~Lq~~l   66 (68)
T d1mdya_           7 TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQ-RLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTS-CCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            34567899999999999999999999999999998654 5999999999999999998754

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.7e-19  Score=100.13  Aligned_cols=56  Identities=23%  Similarity=0.433  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhcCCCC----CCcccccHHHHHHHHHHHHHHHHHHH
Q psy14769         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSL----QGEKVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        15 ~R~~hn~~Er~RR~~i~~~~~~L~~llP~~----~~~~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      +|.+||.+||+||..||.+|..|+.+||++    ....|+||+.||..||+||++|++.+
T Consensus         2 rR~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            578999999999999999999999999963    23456999999999999999998743

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.5e-20  Score=102.79  Aligned_cols=57  Identities=40%  Similarity=0.640  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC---CcccccHHHHHHHHHHHHHHHHHHH
Q psy14769         14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ---GEKVASRAQILKKAADYIQFMRRKN   70 (90)
Q Consensus        14 ~~R~~hn~~Er~RR~~i~~~~~~L~~llP~~~---~~~k~sK~~iL~~ai~yIk~L~~~~   70 (90)
                      .+|.+||.+||+||..||.+|..|+.+||.+.   ...++||++||..|++||+.|++.+
T Consensus         4 ~rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            46789999999999999999999999999864   2347999999999999999998754

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.3e-17  Score=89.54  Aligned_cols=58  Identities=29%  Similarity=0.423  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14769         27 RDHIKDSFSSLRDSVPSLQGEKVASRAQILKKAADYIQFMRRKNASHQQDIDDLKRQNAI   86 (90)
Q Consensus        27 R~~i~~~~~~L~~llP~~~~~~k~sK~~iL~~ai~yIk~L~~~~~~l~~~~~~L~~~~~~   86 (90)
                      |..||++|..|+.+||++  ..|++|++||..||+||+.|+..+..|.++...|+..++.
T Consensus         1 R~~in~~f~~L~~lvP~~--~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~   58 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGT--DAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQK   58 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCS--SCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHhhCCCC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999987  3479999999999999999999999999999999887753