Psyllid ID: psy14919

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKAPAPLTSQEEERAELRKFESSGQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELHPKKTAERPKFDKPKGPPNRGAKRITKPQATPQS
cHHHHHHHHHcccccEEEEEEEEcccEEEEcEEEcccccccccHHHHccccccccccEEEEEEEEcccccccccEEEEEEEcccccccccEEEEccHHHHHHHcccccEEEEEEEcccccccHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEEccHHHHHHHHHHHHccccEEEEEEEccccEEEEccccccccccccccccccccEEEEEEEEEccccccEEcEEEEEEccccccccccEEEEccccHHHHHHHHHcccEEEEEEEccccccccHHHHHHHccccccccccccccccccccccccccccccccccc
cHHHHHHHHHHHcccccEEEEEEcccEEEEEEEEcccccHHHHHHHHcHHHccccccEEEEEEEEEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcHHHEEEEEEEccHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccEcccccccccccHHHHHHHHHHHcccccEEEEEEcccccEEEEEccccccHHHHHHHccccccEEEEEEEccccccccccEEEEEEEcccccccHHHHHHHcccHHHHHHHHHHcccEEEEEEEEccHHHccHHHHHHHcccccccccHHcccccccccccccEEEcccccccc
NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLiqeaqpcyilyrfdsknetgghdwllifwspddspvrQKMLYASTkstlkqdfgsgqikeeihatvpvdvtlhgyelhkravkapapltsqEEERAELRKfessgqcqisidtrtqtlsgvafpllpdaesSVHKLIKAKYNYVQFRIDLQEETINLVQSGEvtlkqlpsmiptdsaryHLFNfrhefegkiIDSVVFIysmpgyslpikermlyssckapllenlhhlgltidkkleidsgselTEEFLLeelhpkktaerpkfdkpkgppnrgakritkpqatpqs
nealkkffgsirdekirVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKravkapapltsQEEERAELRkfessgqcqiSIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLeelhpkktaerpkfdkpkgppnrgakritkpqatpqs
NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKAPAPLTSQEEERAELRKFESSGQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSelteeflleelHPKKTAERPKFDKPKGPPNRGAKRITKPQATPQS
*****KFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSPD*******MLY**********F**GQIKEEIHATVPVDVTLHGYELHKR***************************QISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEID************************************************
*EALKKFFGSIRDEKIRVFKVSIENEALVLAG******TWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYE**********************************************FPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQ***********MIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEF***************************************
NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKAP*********************CQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELHPKK******************************
NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKAPAPLTSQEEERAELRKFESSGQC*********TLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELHP********************************
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKAPAPLTSQEEERAELRKFESSGQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELHPKKTAERPKFDKPKGPPNRGAKRITKPQATPQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
Q7QG28343 Twinfilin OS=Anopheles ga yes N/A 0.982 0.970 0.559 1e-104
Q298X4345 Twinfilin OS=Drosophila p yes N/A 0.988 0.971 0.544 1e-103
Q9VFM9343 Twinfilin OS=Drosophila m yes N/A 0.979 0.967 0.546 1e-102
Q17A58343 Twinfilin OS=Aedes aegypt N/A N/A 0.982 0.970 0.544 1e-102
Q5ZM35349 Twinfilin-2 OS=Gallus gal yes N/A 0.961 0.934 0.501 1e-91
Q7ZXP0349 Twinfilin-2-A OS=Xenopus N/A N/A 0.961 0.934 0.501 4e-91
Q91YR1350 Twinfilin-1 OS=Mus muscul yes N/A 0.991 0.96 0.483 5e-91
Q5R7N2350 Twinfilin-1 OS=Pongo abel yes N/A 0.991 0.96 0.478 1e-90
Q640W2349 Twinfilin-2-B OS=Xenopus N/A N/A 0.961 0.934 0.492 2e-90
Q5RJR2350 Twinfilin-1 OS=Rattus nor yes N/A 0.991 0.96 0.480 3e-90
>sp|Q7QG28|TWF_ANOGA Twinfilin OS=Anopheles gambiae GN=twf PE=3 SV=2 Back     alignment and function desciption
 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/336 (55%), Positives = 236/336 (70%), Gaps = 3/336 (0%)

Query: 1   NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
           N  L KFFG  +D K RV KVSIENE L L  +  V   W +D+D  V  LI+E+ PCYI
Sbjct: 10  NAELLKFFGKCKDGKTRVLKVSIENEELRLVSHSDVKRDWEKDYDTLVRPLIEESTPCYI 69

Query: 61  LYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD 120
           LYR D K  TG + WLL+ W P+ + VRQKMLYASTK+TLK +FGSG IKEE++AT   +
Sbjct: 70  LYRLDYKIPTG-YAWLLMSWVPESATVRQKMLYASTKATLKLEFGSGHIKEELNATSKEE 128

Query: 121 VTLHGYELHKRAVKAPAPLTSQEEERAELRKFESSGQCQISIDTRTQTLSGVAFPLLPDA 180
            TL GY+ HK     PAPLTS+EEE AELRK E   +    IDT+ QTL G+  P+    
Sbjct: 129 TTLQGYQKHKVDFNTPAPLTSREEELAELRKTEV--KTDFGIDTKQQTLGGINCPIADAV 186

Query: 181 ESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFE 240
             ++H + +  YNY+QFRIDL+EE I+LV++  + L  LP+ IPTD ARYHL+ F+H  E
Sbjct: 187 AQALHDMRRGGYNYLQFRIDLEEEKIHLVKADNIELTGLPAQIPTDHARYHLYIFKHHHE 246

Query: 241 GKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEF 300
           G  ++SVVF+YSMPGYS  I+ERM+YSSCK P    +   G+ + KKLEID+G+ELTEEF
Sbjct: 247 GNYLESVVFVYSMPGYSCSIRERMMYSSCKGPFSATIEKHGIQVAKKLEIDNGAELTEEF 306

Query: 301 LLEELHPKKTAERPKFDKPKGPPNRGAKRITKPQAT 336
           L EELHP+K   RP+F KPKGPP+RGAKR+TKPQA 
Sbjct: 307 LHEELHPRKLNLRPQFSKPKGPPSRGAKRLTKPQAV 342
Actin-binding protein involved in motile and morphological processes. Inhibits actin polymerization, likely by sequestering G-actin.
Anopheles gambiae (taxid: 7165)
>sp|Q298X4|TWF_DROPS Twinfilin OS=Drosophila pseudoobscura pseudoobscura GN=twf PE=3 SV=2 Back     alignment and function description
>sp|Q9VFM9|TWF_DROME Twinfilin OS=Drosophila melanogaster GN=twf PE=1 SV=1 Back     alignment and function description
>sp|Q17A58|TWF_AEDAE Twinfilin OS=Aedes aegypti GN=twf PE=3 SV=1 Back     alignment and function description
>sp|Q5ZM35|TWF2_CHICK Twinfilin-2 OS=Gallus gallus GN=TWF2 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZXP0|TWF2A_XENLA Twinfilin-2-A OS=Xenopus laevis GN=twf2-a PE=2 SV=1 Back     alignment and function description
>sp|Q91YR1|TWF1_MOUSE Twinfilin-1 OS=Mus musculus GN=Twf1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R7N2|TWF1_PONAB Twinfilin-1 OS=Pongo abelii GN=TWF1 PE=2 SV=1 Back     alignment and function description
>sp|Q640W2|TWF2B_XENLA Twinfilin-2-B OS=Xenopus laevis GN=twf2-b PE=2 SV=1 Back     alignment and function description
>sp|Q5RJR2|TWF1_RAT Twinfilin-1 OS=Rattus norvegicus GN=Twf1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
91090079344 PREDICTED: similar to twinfilin [Triboli 0.976 0.962 0.595 1e-116
156537411347 PREDICTED: twinfilin-like isoform 1 [Nas 0.994 0.971 0.616 1e-116
350411244350 PREDICTED: twinfilin-like [Bombus impati 0.979 0.948 0.616 1e-114
340729882350 PREDICTED: LOW QUALITY PROTEIN: twinfili 0.979 0.948 0.610 1e-113
66556839350 PREDICTED: twinfilin [Apis mellifera] 0.979 0.948 0.607 1e-113
380023082350 PREDICTED: twinfilin-like [Apis florea] 0.979 0.948 0.610 1e-113
383851319350 PREDICTED: twinfilin-like [Megachile rot 0.979 0.948 0.607 1e-113
332024500 488 Twinfilin [Acromyrmex echinatior] 0.994 0.690 0.587 1e-111
307191543347 Twinfilin [Camponotus floridanus] 0.979 0.956 0.595 1e-111
322789175344 hypothetical protein SINV_08596 [Solenop 0.979 0.965 0.586 1e-110
>gi|91090079|ref|XP_969933.1| PREDICTED: similar to twinfilin [Tribolium castaneum] gi|270013504|gb|EFA09952.1| hypothetical protein TcasGA2_TC012105 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/334 (59%), Positives = 259/334 (77%), Gaps = 3/334 (0%)

Query: 1   NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
           N+ LKKF G  RD K+R+ K+SIENE L LA +K+V  +W +DFD  +  LI+E QPCY+
Sbjct: 10  NDELKKFLGKCRDGKVRIVKISIENEQLTLASHKEVKHSWDKDFDACITPLIEENQPCYL 69

Query: 61  LYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD 120
           LYR DSKN + G++WL I WSPD +PVRQKMLYASTK+TLKQ+FG+ QIKEE+H TV  D
Sbjct: 70  LYRLDSKN-SSGYEWLFISWSPDTAPVRQKMLYASTKATLKQEFGTSQIKEELHGTVTSD 128

Query: 121 VTLHGYELHKRAVKAPAPLTSQEEERAELRKFESSGQCQISIDTRTQTLSGVAFPLLPDA 180
           +TL+GY+ HK+AV APAPLT++EEE  E+R+  +     IS+D++ QTLSGVAFPL   A
Sbjct: 129 ITLNGYQKHKKAVSAPAPLTTREEELQEIRR--TVVHTDISVDSKQQTLSGVAFPLTEAA 186

Query: 181 ESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFE 240
             +V  + +  Y+Y+QF+I+++EETI+LV + ++++++LPS +P DS RYHL+ F+H  E
Sbjct: 187 RQAVVDMARGSYDYLQFKINIEEETIHLVTAEKLSIEKLPSKVPADSGRYHLYKFKHTHE 246

Query: 241 GKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEF 300
           G  ++++VFIYSMPGY+ PIKERMLYSSCK PL + +  LGL I KKLEIDSGSELTEEF
Sbjct: 247 GDYMENIVFIYSMPGYNCPIKERMLYSSCKNPLTDTITSLGLEIVKKLEIDSGSELTEEF 306

Query: 301 LLEELHPKKTAERPKFDKPKGPPNRGAKRITKPQ 334
           L EE+HP K   RPKF KPKGPPNRG KR+TK Q
Sbjct: 307 LYEEIHPTKNLHRPKFAKPKGPPNRGPKRMTKSQ 340

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156537411|ref|XP_001606836.1| PREDICTED: twinfilin-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350411244|ref|XP_003489283.1| PREDICTED: twinfilin-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340729882|ref|XP_003403223.1| PREDICTED: LOW QUALITY PROTEIN: twinfilin-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|66556839|ref|XP_393653.2| PREDICTED: twinfilin [Apis mellifera] Back     alignment and taxonomy information
>gi|380023082|ref|XP_003695358.1| PREDICTED: twinfilin-like [Apis florea] Back     alignment and taxonomy information
>gi|383851319|ref|XP_003701181.1| PREDICTED: twinfilin-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332024500|gb|EGI64698.1| Twinfilin [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307191543|gb|EFN75046.1| Twinfilin [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322789175|gb|EFZ14561.1| hypothetical protein SINV_08596 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
UNIPROTKB|Q298X4345 twf "Twinfilin" [Drosophila ps 0.988 0.971 0.520 2.2e-89
FB|FBgn0038206343 twf "twinfilin" [Drosophila me 0.979 0.967 0.522 5.9e-89
MGI|MGI:1100520350 Twf1 "twinfilin, actin-binding 0.991 0.96 0.466 4.1e-81
RGD|1311872350 Twf1 "twinfilin, actin-binding 0.991 0.96 0.463 6.6e-81
UNIPROTKB|F1NZP0341 TWF2 "Twinfilin-2" [Gallus gal 0.961 0.956 0.480 1.1e-80
UNIPROTKB|Q5ZM35349 TWF2 "Twinfilin-2" [Gallus gal 0.961 0.934 0.480 1.1e-80
UNIPROTKB|E1C198350 TWF1 "Uncharacterized protein" 0.991 0.96 0.457 1.2e-79
UNIPROTKB|Q56JV6350 TWF1 "Twinfilin-1" [Bos taurus 0.991 0.96 0.460 1.6e-79
UNIPROTKB|F1SGZ8350 TWF1 "Uncharacterized protein" 0.991 0.96 0.454 2e-79
UNIPROTKB|J9NRP8350 TWF1 "Uncharacterized protein" 0.991 0.96 0.454 2.6e-79
UNIPROTKB|Q298X4 twf "Twinfilin" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 176/338 (52%), Positives = 223/338 (65%)

Query:     1 NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
             NE L K  G  ++ K+RV KVSIENE L  +    V   W +D+DK +  L++E  PCYI
Sbjct:    10 NEQLAKVLGKAKNGKLRVVKVSIENEQLSCSATADVKKDWERDYDKLLGPLLEETVPCYI 69

Query:    61 LYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD 120
             LYR D+K   G H WLLI W PD + +RQKM+YASTK+TLK +FGS  I EE+HAT   +
Sbjct:    70 LYRLDAKIPLG-HSWLLISWIPDTASIRQKMVYASTKATLKTEFGSAYITEELHATTLEE 128

Query:   121 VTLHGYELHKRAVKAPAPLTSQEEERAELRKFESSGQCQISIDTRTQTLSGVAFPLLPDA 180
              TL GY  HKR   APAPLT++EEE  ELRK E     +IS +TR QTL G++ PL    
Sbjct:   129 TTLEGYRKHKRDFAAPAPLTTREEELKELRKTEV--HTEISTNTRHQTLGGISCPLTDAT 186

Query:   181 ESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFE 240
              ++V  L++  Y+Y+QFRIDL+EE I++  + +V L  LP  +P D ARYHLF FRH  E
Sbjct:   187 VAAVQDLVRGNYDYLQFRIDLEEERIHVSHAAQVELSALPKQVPEDHARYHLFLFRHTHE 246

Query:   241 GKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSXXXXXX 300
             G   +S VF+YSMPGY+  ++ERM+YSSCKAP LE L  LG+ + KKLEID+G+      
Sbjct:   247 GDYQESYVFVYSMPGYTCSVRERMMYSSCKAPFLEQLAALGVDVVKKLEIDNGNELTEAY 306

Query:   301 XXXXXHPKKTAERPKFDKPKGPPNRGAKRITKPQATPQ 338
                  HPKK   RP F KPKGPPNRGAKR+T+P    Q
Sbjct:   307 LLDELHPKKILHRPAFAKPKGPPNRGAKRLTRPSNEDQ 344
GO:0003779 "actin binding" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISS
GO:0030833 "regulation of actin filament polymerization" evidence=ISS
FB|FBgn0038206 twf "twinfilin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1100520 Twf1 "twinfilin, actin-binding protein, homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311872 Twf1 "twinfilin, actin-binding protein, homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZP0 TWF2 "Twinfilin-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZM35 TWF2 "Twinfilin-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C198 TWF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q56JV6 TWF1 "Twinfilin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGZ8 TWF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRP8 TWF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O94399TWF1_SCHPONo assigned EC number0.25570.84360.8719yesN/A
Q6IBS0TWF2_HUMANNo assigned EC number0.49100.97050.9426yesN/A
Q7ZXP0TWF2A_XENLANo assigned EC number0.50150.96160.9340N/AN/A
Q5R7N2TWF1_PONABNo assigned EC number0.47800.99110.96yesN/A
Q7QG28TWF_ANOGANo assigned EC number0.55950.98230.9708yesN/A
Q9VFM9TWF_DROMENo assigned EC number0.54620.97930.9679yesN/A
Q298X4TWF_DROPSNo assigned EC number0.54430.98820.9710yesN/A
Q5RJR2TWF1_RATNo assigned EC number0.48090.99110.96yesN/A
Q869T1TWF_DICDINo assigned EC number0.33330.91440.9253yesN/A
Q56JV6TWF1_BOVINNo assigned EC number0.48090.99110.96yesN/A
Q5ZM35TWF2_CHICKNo assigned EC number0.50150.96160.9340yesN/A
Q17A58TWF_AEDAENo assigned EC number0.54460.98230.9708N/AN/A
Q91YR1TWF1_MOUSENo assigned EC number0.48380.99110.96yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
cd11284132 cd11284, ADF_Twf-C_like, C-terminal ADF domain of 5e-50
cd11285139 cd11285, ADF_Twf-N_like, N-terminal ADF domain of 2e-49
smart00102127 smart00102, ADF, Actin depolymerisation factor/cof 1e-21
smart00102127 smart00102, ADF, Actin depolymerisation factor/cof 2e-21
cd11286133 cd11286, ADF_cofilin_like, Cofilin, Destrin, and r 5e-16
cd0001397 cd00013, ADF_gelsolin, Actin depolymerization fact 4e-14
cd0001397 cd00013, ADF_gelsolin, Actin depolymerization fact 2e-13
pfam00241127 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type a 3e-13
cd11284132 cd11284, ADF_Twf-C_like, C-terminal ADF domain of 2e-07
pfam00241127 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type a 6e-07
cd11286133 cd11286, ADF_cofilin_like, Cofilin, Destrin, and r 4e-06
cd11283122 cd11283, ADF_GMF-beta_like, ADF-homology domain of 0.001
>gnl|CDD|200440 cd11284, ADF_Twf-C_like, C-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information 
 Score =  162 bits (413), Expect = 5e-50
 Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 7/137 (5%)

Query: 170 SGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGE-VTLKQLPSMIPTDSA 228
            GVAFP+  +A+ ++ +L     N VQ  IDL+ ETI LV S        L S+IP+D  
Sbjct: 1   PGVAFPVSEEAKDALSELASGGVNLVQLSIDLENETIELVSSSSISIPDDLSSLIPSDHP 60

Query: 229 RYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENL-HHLGLTIDKK 287
           RYH + + H +      SVVFIYS P  S  +KERMLY+S K+ LL +      + IDKK
Sbjct: 61  RYHFYRYPHTYL----SSVVFIYSCPSGS-KVKERMLYASSKSGLLNHAEDEGKIEIDKK 115

Query: 288 LEIDSGSELTEEFLLEE 304
           +EI    ELTE FL +E
Sbjct: 116 IEIGDPDELTESFLSDE 132

Actin depolymerization factor/cofilin-like domains (ADF domains) are present in a family of essential eukaryotic actin regulatory proteins. Twinfilin contains two ADF domains, and inhibits the assembly of actin filaments by strongly interacting with monomeric ADP-actin (ADP-G-actin) in a 1:1 stochiometry (with it's C-terminal ADF domain, Twf-C) and inhibiting the actin monomer's nucleotide exchange. Mammalian twinfilin may also cap the barbed ends of F-actin filaments and prevent further assembly (or disassembly), in a process which requires both ADF domains. The N-terminal ADF domain (Twf-N) binds G-actin with a lower affinity than Twf-C; Twf-C can also bind F-actin. During capping, Twf-N may interact with the terminal actin subunit, and Twf-C may bind between two adjacent subunits at the side of the filament. Length = 132
>gnl|CDD|200441 cd11285, ADF_Twf-N_like, N-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin depolymerizing factors Back     alignment and domain information
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and gelsolin-like domains Back     alignment and domain information
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and gelsolin-like domains Back     alignment and domain information
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding protein Back     alignment and domain information
>gnl|CDD|200440 cd11284, ADF_Twf-C_like, C-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding protein Back     alignment and domain information
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin depolymerizing factors Back     alignment and domain information
>gnl|CDD|200439 cd11283, ADF_GMF-beta_like, ADF-homology domain of glia maturation factor beta and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
KOG1747|consensus342 100.0
PLN03216141 actin depolymerizing factor; Provisional 100.0
PLN03216141 actin depolymerizing factor; Provisional 99.97
cd00013132 ADF Actin depolymerisation factor/cofilin -like do 99.97
KOG1735|consensus146 99.97
PF00241127 Cofilin_ADF: Cofilin/tropomyosin-type actin-bindin 99.96
smart00102127 ADF Actin depolymerisation factor/cofilin -like do 99.96
PF00241127 Cofilin_ADF: Cofilin/tropomyosin-type actin-bindin 99.95
KOG1735|consensus146 99.95
PTZ00152122 cofilin/actin-depolymerizing factor 1-like protein 99.94
cd00013132 ADF Actin depolymerisation factor/cofilin -like do 99.94
smart00102127 ADF Actin depolymerisation factor/cofilin -like do 99.94
PTZ00152122 cofilin/actin-depolymerizing factor 1-like protein 99.91
KOG1736|consensus143 99.88
KOG1736|consensus143 99.73
KOG1747|consensus 342 99.68
KOG3655|consensus 484 99.23
KOG3655|consensus 484 99.13
>KOG1747|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.8e-74  Score=525.03  Aligned_cols=329  Identities=51%  Similarity=0.853  Sum_probs=312.2

Q ss_pred             ChhHHHHHHccccCCeeEEEEEEeCCEEEEeeeeccCCCccCChhhhchhccCCCCcEEEEEEeeecCCCCceeEEEEEE
Q psy14919          1 NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFW   80 (339)
Q Consensus         1 s~e~~~af~~~~~~~~r~ii~~i~~e~i~v~~~~~~~~~~~~d~~~l~~~~l~~~~p~Y~ly~~~~~~~~g~~klvfI~w   80 (339)
                      ++++.+.|++.+++++|.+++.|+++++++..+.+++++|+.||++++..++.+.+|||+||+.+..++    +|+||+|
T Consensus        10 ~e~l~~~l~~~~~~k~R~ikIvI~nEql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds~~~----~w~lIs~   85 (342)
T KOG1747|consen   10 TEALKKFLNEAKNGKLRLIKIVIENEQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDSKNA----EWLLISW   85 (342)
T ss_pred             HHHHHHHHHhcccCceEEEEEEEecccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecCCCc----cEEEEEE
Confidence            367899999999999999999999999999999999999999999999998999999999999987753    7999999


Q ss_pred             cCCCchhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCcccCChhHHHhhhhhccCCCCCCHHHHHHHHHHhhhccCcccc
Q psy14919         81 SPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKAPAPLTSQEEERAELRKFESSGQCQI  160 (339)
Q Consensus        81 ~Pd~a~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~dl~~~~i~~~~~~~~~~~~lt~~E~~~~~~~~~e~~~~~~~  160 (339)
                      +||+|+||+||||||||++|++++|+.++..+.++++++||+...+.+.+..+++++|||++|++++|++++|  ..+.+
T Consensus        86 vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l~~~~~~~PLt~~EeEl~ei~~~e--~~t~~  163 (342)
T KOG1747|consen   86 VPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSLSSQAAPAPLTSDEEELKEINKNE--VLTEI  163 (342)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhhhhccCCCCCchhHHHHHHHHHHH--HHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888  34456


Q ss_pred             cccccccccCccccccChhHHHHHHHHHcCCccEEEEEEeCCCceEEEeecCC-CCcccccccCCCCCCeEEEEeeeeec
Q psy14919        161 SIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGE-VTLKQLPSMIPTDSARYHLFNFRHEF  239 (339)
Q Consensus       161 ~~~~~~~~~sgv~~~~s~e~~~~~~~lk~~~~~~v~~ki~~~~e~I~l~~~~~-~~~~~l~~~Lp~~~prY~vy~~~~~~  239 (339)
                      +..+++++++||+|++++++..++++|++++++||+|.||..+|+|.|.++.. ++++||...+|.+.|||++|.|.++|
T Consensus       164 ~~~~kh~tl~Gva~pi~~~a~kAl~~L~~~~~n~vql~ID~~nE~I~l~~t~~~~e~sdL~s~vP~d~prY~ff~~~ht~  243 (342)
T KOG1747|consen  164 HTSPKHQTLQGVAFPIDRNAEKALQDLKSSKLNYVQLSIDLENETIQLSQTDTCTEPSDLPSRVPRDGPRYHFFLFKHTH  243 (342)
T ss_pred             ccCcceeeccceeecccHHHHHHHHHHHhhccceEEEEeccccceeeeeccCCCCChHHhhhhcCCCCCceEEEeccccc
Confidence            77888888999999999999999999998889999999999999999999875 69999999999999999999999999


Q ss_pred             CCceeceEEEEEEeCCCCCCcccceeeecchHHHHHHhhh-cCcceeEEEEeCCCCCCCHHHHHhhcCCCCCCCCCCCCC
Q psy14919        240 EGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHH-LGLTIDKKLEIDSGSELTEEFLLEELHPKKTAERPKFDK  318 (339)
Q Consensus       240 ~g~~~~k~vFI~w~P~~~a~vk~KMlYAssk~~~~~~l~~-~~i~i~~~ie~~d~~el~~~~i~~~l~p~~~~~~~~f~k  318 (339)
                      +|...+.++|||.||.++|+||+||||||||.+|++.++. +||.|.++||++|.+||+++.+.+.+||.+-.+...|+|
T Consensus       244 eGD~~es~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~Hp~~i~h~qafa~  323 (342)
T KOG1747|consen  244 EGDPLESIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELHPKQIAHPQAFAK  323 (342)
T ss_pred             CCCCceeEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhCcccccccccccC
Confidence            9999999999999999999999999999999999999996 999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccCCCC
Q psy14919        319 PKGPPNRGAKRITKPQA  335 (339)
Q Consensus       319 P~~p~~r~~~~~~~~~~  335 (339)
                      |+|||+|+++|.+++.+
T Consensus       324 P~~p~~rg~~R~~r~~~  340 (342)
T KOG1747|consen  324 PKGPGGRGKPRLPRRPA  340 (342)
T ss_pred             CCCCCCCCCCCCCCCCC
Confidence            99999999898776654

>PLN03216 actin depolymerizing factor; Provisional Back     alignment and domain information
>PLN03216 actin depolymerizing factor; Provisional Back     alignment and domain information
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments Back     alignment and domain information
>KOG1735|consensus Back     alignment and domain information
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma Back     alignment and domain information
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma Back     alignment and domain information
>KOG1735|consensus Back     alignment and domain information
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments Back     alignment and domain information
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>KOG1736|consensus Back     alignment and domain information
>KOG1736|consensus Back     alignment and domain information
>KOG1747|consensus Back     alignment and domain information
>KOG3655|consensus Back     alignment and domain information
>KOG3655|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3daw_B164 Structure Of The Actin-Depolymerizing Factor Homolo 2e-37
2d8b_A166 Solution Structure Of The Second Tandem Cofilin-Dom 3e-37
1m4j_A142 Crystal Structure Of The N-Terminal Adf-H Domain Of 1e-33
2vac_A134 Structure Of N-Terminal Actin Depolymerizing Factor 2e-33
2hd7_A142 Solution Structure Of C-Teminal Domain Of Twinfilin 3e-33
2w0i_A135 Structure Of C-Terminal Actin Depolymerizing Factor 4e-29
2lj8_A144 Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA B 1e-05
2i2q_A137 Fission Yeast Cofilin Length = 137 2e-05
1ak6_A174 Destrin, Nmr, Minimized Average Structure Length = 2e-05
1q8g_A166 Nmr Structure Of Human Cofilin Length = 166 9e-05
1f7s_A139 Crystal Structure Of Adf1 From Arabidopsis Thaliana 1e-04
1cnu_A137 Phosphorylated Actophorin From Acantamoeba Polyphag 3e-04
1cnu_A137 Phosphorylated Actophorin From Acantamoeba Polyphag 3e-04
1ahq_A137 Recombinant Actophorin Length = 137 3e-04
1ahq_A137 Recombinant Actophorin Length = 137 3e-04
1tvj_A166 Solution Structure Of Chick Cofilin Length = 166 3e-04
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology Domain In Complex With Actin Length = 164 Back     alignment and structure 
Iteration: 1

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 161 SIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLP 220
           S+DT+ QTL GVAFP+  DA  ++ KL K + NYVQ  ID++ ETI L  +    L+ LP
Sbjct: 9   SMDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENTELRDLP 68
Query: 221 SMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENL-HH 279
             IP DSARYH F ++H  EG  ++SVVFIYSMPGY+  I+ERMLYSSCK+PLLE +   
Sbjct: 69  KRIPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQ 128
Query: 280 LGLTIDKKLEIDSGSXXXXXXXXXXXHPKKTAER 313
           L + + +K+EID+G            HPK+ A +
Sbjct: 129 LQMDVIRKIEIDNGDELTADFLYDEVHPKQHAHK 162
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of Mouse Twinfilin Length = 166 Back     alignment and structure
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse Twinfilin Isoform-1 Length = 142 Back     alignment and structure
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor Homology (Adf-H) Domain Of Human Twinfilin-2 Length = 134 Back     alignment and structure
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1 Length = 142 Back     alignment and structure
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor Homology (Adf-H) Domain Of Human Twinfilin-2 Length = 135 Back     alignment and structure
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI Length = 144 Back     alignment and structure
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin Length = 137 Back     alignment and structure
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure Length = 174 Back     alignment and structure
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin Length = 166 Back     alignment and structure
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana Length = 139 Back     alignment and structure
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga Length = 137 Back     alignment and structure
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga Length = 137 Back     alignment and structure
>pdb|1AHQ|A Chain A, Recombinant Actophorin Length = 137 Back     alignment and structure
>pdb|1AHQ|A Chain A, Recombinant Actophorin Length = 137 Back     alignment and structure
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 4e-53
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 1e-09
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 1e-51
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 7e-09
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 2e-45
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 4e-10
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 5e-41
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 3e-08
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 3e-40
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 2e-08
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 4e-32
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 1e-13
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 1e-26
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 6e-18
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 2e-25
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 1e-16
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 1e-24
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 1e-13
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 8e-23
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 1e-12
2xfa_A148 Actin depolymerization factor 2; actin binding pro 1e-22
2xfa_A148 Actin depolymerization factor 2; actin binding pro 2e-08
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 2e-21
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 2e-13
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 1e-20
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 1e-19
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 5e-20
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 1e-09
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 7e-20
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 4e-15
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 4e-19
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 5e-19
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 2e-12
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 5e-07
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 6e-07
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Length = 164 Back     alignment and structure
 Score =  171 bits (435), Expect = 4e-53
 Identities = 83/162 (51%), Positives = 111/162 (68%), Gaps = 1/162 (0%)

Query: 154 SSGQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGE 213
           S      S+DT+ QTL GVAFP+  DA  ++ KL K + NYVQ  ID++ ETI L  +  
Sbjct: 2   SHHHHHHSMDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTEN 61

Query: 214 VTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPL 273
             L+ LP  IP DSARYH F ++H  EG  ++SVVFIYSMPGY+  I+ERMLYSSCK+PL
Sbjct: 62  TELRDLPKRIPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPL 121

Query: 274 LENL-HHLGLTIDKKLEIDSGSELTEEFLLEELHPKKTAERP 314
           LE +   L + + +K+EID+G ELT +FL +E+HPK+ A + 
Sbjct: 122 LEIVERQLQMDVIRKIEIDNGDELTADFLYDEVHPKQHAHKQ 163
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Length = 164 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Length = 166 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Length = 166 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Length = 135 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Length = 135 Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Length = 142 Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Length = 142 Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Length = 134 Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Length = 134 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Length = 151 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Length = 151 Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Length = 137 Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Length = 137 Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Length = 154 Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Length = 154 Back     alignment and structure
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Length = 139 Back     alignment and structure
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Length = 139 Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Length = 148 Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Length = 148 Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Length = 143 Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Length = 143 Back     alignment and structure
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Length = 137 Back     alignment and structure
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Length = 137 Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Length = 139 Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Length = 139 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Length = 174 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Length = 174 Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Length = 124 Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Length = 166 Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Length = 166 Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Length = 141 Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Length = 141 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 100.0
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 100.0
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 100.0
2kvk_A144 Actin severing and dynamics regulatory protein; AD 100.0
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 100.0
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 100.0
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 100.0
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 100.0
2lj8_A144 Cofilin/actin depolymerizing factor, putative; pro 100.0
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 99.98
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 99.98
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 99.98
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 99.97
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 99.97
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 99.97
2xfa_A148 Actin depolymerization factor 2; actin binding pro 99.97
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 99.97
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 99.97
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 99.96
2lj8_A144 Cofilin/actin depolymerizing factor, putative; pro 99.96
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 99.96
2kvk_A144 Actin severing and dynamics regulatory protein; AD 99.96
2xfa_A148 Actin depolymerization factor 2; actin binding pro 99.96
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 99.96
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 99.96
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 99.96
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 99.96
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 99.96
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 99.96
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 99.96
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 99.96
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 99.96
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 99.95
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 99.95
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 99.95
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 99.95
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 99.95
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 99.95
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 99.95
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 99.94
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 99.94
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 99.94
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 99.92
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 99.92
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Back     alignment and structure
Probab=100.00  E-value=7.3e-38  Score=270.94  Aligned_cols=154  Identities=53%  Similarity=0.912  Sum_probs=132.3

Q ss_pred             ccccccccccCccccccChhHHHHHHHHHcCCccEEEEEEeCCCceEEEeecCCCCcccccccCCCCCCeEEEEeeeeec
Q psy14919        160 ISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEF  239 (339)
Q Consensus       160 ~~~~~~~~~~sgv~~~~s~e~~~~~~~lk~~~~~~v~~ki~~~~e~I~l~~~~~~~~~~l~~~Lp~~~prY~vy~~~~~~  239 (339)
                      ++++.++++++||.|+|+++|+++|++|+.++++||+|+|+.++++|+|+...+.++++|.+.||+++|||+||+|++++
T Consensus         8 ~~~~~~~~~~~gv~~~v~~e~~~a~~~lk~~~~~~iifkId~~~e~I~v~~~~~~~~~df~~~Lp~~~pRY~vyd~~~~~   87 (164)
T 3daw_B            8 HSMDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENTELRDLPKRIPKDSARYHFFLYKHSH   87 (164)
T ss_dssp             ----------CCCCCCBCHHHHHHHHHHHTTSCSEEEEEEETTTTEEEEEECCCCCGGGSGGGSCSSSCEEEEEEEEEEE
T ss_pred             ccccchhhccCcceEEECHHHHHHHHHHHcCCceEEEEEEeCCCCEEEEEeCCCCCHHHHHHhCCccCceEEEEeccccc
Confidence            35667788899999999999999999999888999999999989999999886679999999999999999999999999


Q ss_pred             CCceeceEEEEEEeCCCCCCcccceeeecchHHHHHHhhh-cCcceeEEEEeCCCCCCCHHHHHhhcCCCCCCCC
Q psy14919        240 EGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHH-LGLTIDKKLEIDSGSELTEEFLLEELHPKKTAER  313 (339)
Q Consensus       240 ~g~~~~k~vFI~w~P~~~a~vk~KMlYAssk~~~~~~l~~-~~i~i~~~ie~~d~~el~~~~i~~~l~p~~~~~~  313 (339)
                      +|+...+++||||||+++|+||+||||||||++|++.|+. +||.|.++||++|++||+++.|.++|+|+...++
T Consensus        88 ~g~~~~~~ifi~~~P~~~a~ik~kMlYASsK~~l~~~l~~~~Gi~i~k~iea~d~~Elt~e~l~ekl~p~~~~~~  162 (164)
T 3daw_B           88 EGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVHPKQHAHK  162 (164)
T ss_dssp             TTEEEEEEEEEEECCSTTSCHHHHHHHHHTHHHHHHHHHHHHCCCEEEEEEESSSSSCCHHHHHHHHSCC-----
T ss_pred             CCCccccEEEEEEcCCCCCCHHHHHHHHHhHHHHHHHHhhccCCceeEEEEeCChHHcCHHHHHhHhCCcccccC
Confidence            8888889999999999679999999999999999999985 6888899999999999999999999999876543
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Back     alignment and structure
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani} Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Back     alignment and structure
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei} Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Back     alignment and structure
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Back     alignment and structure
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei} Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Back     alignment and structure
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani} Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Back     alignment and structure
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Back     alignment and structure
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 339
d1m4ja_133 d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 4e-36
d1m4ja_133 d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 1e-12
d1vkka_137 d.109.1.2 (A:) Glia maturation factor gamma, GMF-g 1e-22
d1vkka_137 d.109.1.2 (A:) Glia maturation factor gamma, GMF-g 6e-21
d1f7sa_124 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 6e-19
d1f7sa_124 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 8e-16
d1cnua_134 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 2e-18
d1cnua_134 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 2e-18
d1q8ga_166 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 2e-18
d1q8ga_166 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 1e-13
d1ak7a_174 d.109.1.2 (A:) Destrin {Human and pig (Homo sapien 3e-18
d1ak7a_174 d.109.1.2 (A:) Destrin {Human and pig (Homo sapien 3e-18
d1cfya_133 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 9e-17
d1cfya_133 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 8e-16
d1t3ya1130 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 ( 2e-15
d1t3ya1130 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 ( 2e-13
d1hqz1_139 d.109.1.2 (1:) Cofilin-like domain of actin-bindin 3e-13
d1hqz1_139 d.109.1.2 (1:) Cofilin-like domain of actin-bindin 4e-10
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Adf-H domain of twinfilin isoform-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 4e-36
 Identities = 63/129 (48%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 1   NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
           +E +K+ F   R+ K R+ K+SIENE LV+        +W QD+D +V  L+++ QPCY+
Sbjct: 4   SEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYV 63

Query: 61  LYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD 120
           L+R DS+N   G++W+ I WSPD S VRQKMLYA+T++TLK++FG G IK+E+  TV  D
Sbjct: 64  LFRLDSQN-AQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKED 122

Query: 121 VTLHGYELH 129
           V+LHGY+ +
Sbjct: 123 VSLHGYKKY 131
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133 Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Length = 124 Back     information, alignment and structure
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Length = 124 Back     information, alignment and structure
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Length = 134 Back     information, alignment and structure
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Length = 134 Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 133 Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 133 Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
d1vkka_137 Glia maturation factor gamma, GMF-gamma {Mouse (Mu 99.97
d1m4ja_133 Adf-H domain of twinfilin isoform-1 {Mouse (Mus mu 99.97
d1cnua_134 Cofilin (actin depolymerizing factor, ADF) {Acanth 99.97
d1f7sa_124 Cofilin (actin depolymerizing factor, ADF) {Plant 99.97
d1cfya_133 Cofilin (actin depolymerizing factor, ADF) {Baker' 99.97
d1ak7a_174 Destrin {Human and pig (Homo sapiens) and (Sus scr 99.96
d1cfya_133 Cofilin (actin depolymerizing factor, ADF) {Baker' 99.96
d1cnua_134 Cofilin (actin depolymerizing factor, ADF) {Acanth 99.96
d1q8ga_166 Cofilin (actin depolymerizing factor, ADF) {Human 99.96
d1vkka_137 Glia maturation factor gamma, GMF-gamma {Mouse (Mu 99.95
d1f7sa_124 Cofilin (actin depolymerizing factor, ADF) {Plant 99.95
d1m4ja_133 Adf-H domain of twinfilin isoform-1 {Mouse (Mus mu 99.95
d1ak7a_174 Destrin {Human and pig (Homo sapiens) and (Sus scr 99.94
d1q8ga_166 Cofilin (actin depolymerizing factor, ADF) {Human 99.94
d1t3ya1130 Coactosin-like protein Cotl1 (Clp) {Human (Homo sa 99.93
d1t3ya1130 Coactosin-like protein Cotl1 (Clp) {Human (Homo sa 99.93
d1hqz1_139 Cofilin-like domain of actin-binding protein abp1p 99.92
d1hqz1_139 Cofilin-like domain of actin-binding protein abp1p 99.92
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Glia maturation factor gamma, GMF-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.9e-32  Score=228.29  Aligned_cols=127  Identities=20%  Similarity=0.412  Sum_probs=116.5

Q ss_pred             cccChhHHHHHHHHHc---CCccEEEEEEeCCCceEEEeecC-CCCcccccccCCCCCCeEEEEeeeeec-CCceeceEE
Q psy14919        174 FPLLPDAESSVHKLIK---AKYNYVQFRIDLQEETINLVQSG-EVTLKQLPSMIPTDSARYHLFNFRHEF-EGKIIDSVV  248 (339)
Q Consensus       174 ~~~s~e~~~~~~~lk~---~~~~~v~~ki~~~~e~I~l~~~~-~~~~~~l~~~Lp~~~prY~vy~~~~~~-~g~~~~k~v  248 (339)
                      +.+++||.++|++|+.   ++++||+|+|+.++++|+++... +.++++|.+.||+++|||+||+|++++ +|+.+++++
T Consensus         3 ~~v~~e~~~~l~~~k~~~~~~~~~ii~~Id~~~~~iv~~~~~~~~~~~~~~~~lp~~~prY~vy~~~~~~~~g~~~~k~v   82 (137)
T d1vkka_           3 CEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLC   82 (137)
T ss_dssp             CEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEESCCHHHHHHHSCSSSCEEEEEECCEECTTSCEECCEE
T ss_pred             EEcCHHHHHHHHHHHhccCCCCCEEEEEECCCceEEEEEecCCCCCHHHHHhhCCCCCcEEEEEEcccccCCCCccccEE
Confidence            5799999999999973   35899999999999999988774 679999999999999999999999988 678899999


Q ss_pred             EEEEeCCCCCCcccceeeecchHHHHHHhhhcCcceeEEEEeCCCCCCCHHHHHhhcC
Q psy14919        249 FIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELH  306 (339)
Q Consensus       249 FI~w~P~~~a~vk~KMlYAssk~~~~~~l~~~~i~i~~~ie~~d~~el~~~~i~~~l~  306 (339)
                      ||+|||+ +||+|.||||||||.+|++.|+     +.+.+|++|.+||+++.|.++|+
T Consensus        83 fi~w~Pd-~a~ik~kMlYassk~~l~~~l~-----~~k~ie~~d~del~~e~l~ekl~  134 (137)
T d1vkka_          83 FIFSSPV-GCKPEQQMMYAGSKNRLVQTAE-----LTKVFEIRTTDDLTETWLKEKLA  134 (137)
T ss_dssp             EEEECCT-TSCHHHHHHHHHHHHHHHHHTT-----CCCEEEESSGGGCCHHHHHHHHH
T ss_pred             EEEECCC-CCChHHhhhhHHHHHHHHHHhC-----CeEEEEeCChHHcCHHHHHHHhh
Confidence            9999999 9999999999999999999994     45779999999999999999885
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Back     information, alignment and structure
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure