Psyllid ID: psy14969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------
Protein Sequence
MTPPFASAPHGKLGLTGTLHGNDQACTDLLTILYDCIVSRSFHVLQHFADLLMGERNKRESGVFHCAGRNFELLQHFADLLMGERNKRESGVFHCAERNFELLQIHGAQEYITRKTEGSEEDEMLTGSILDWPYLEEEVVTQNDQIGRNSPRDLKCKLPWSKIFDFERESNDSDSADSQQRSLELGPVEIKLQLNSFQTSCLKVKRLILQKAHSESSDRDNFEYIRVNQPSIVMRSEDLIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKAVTSVENNFCRSEKNSPNSKLSRYKDFIADRKQSRKCPKKGISKADAEIISSLKDCSYGLRDRRVKTIPYENNRRSSLRINSNLKRKQIEDLPGGNEKKSKSTSCKVINHQAKDECLPQKGDLVRSDSSNESSQEMVEENQRPNSELKSQNENIAIVDSGRDCTSLEPLSVQEVSHLKWHPSDSGDDAIHYYHPTPLHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQKSGEIKFKAD
Secondary Structure (PSIPRED)
ccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccHHHHHHHHHHHHccccccccccEEEccccccHHHHcccccEEEcccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHcccccccccccEEEEEccccEEEEcHHHHHHHHHccEEEEEEccEEccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHcccccHHHHHccccEEEEEcccccccccccHHHHHccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHcccccEEEEEEEcHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHcccccccHHHHcccccccccHHHHHEEcccccccccccccccccccccHEEEcccccccccccccHccHcccccEEEEEEEcccHHHHHHHHHHHHHHHccccccccccEEEEEccccEEEccHHHHHHHHHccEEEEEccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHccHccccccccccEEEccccccccccEEEccccHHHHHHcccccccccccccccHEEEccccccccccccccEEccccccccHHHHHHccccccHHHcccccEEEEEccccccccccccEEEEcccccccccccccHHHccccccHHHHHHccccccEEcccccEcccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHccccccccccccccccccccEEccHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcHHHHHccccEEEEEcccccccccEEEEEcccccccEEEEccc
Coil and Loop (DISEMBL)
mtppfasaphgklgltgtlhgndqACTDLLTILYDCIVSRSFHVLQHFADLLMgernkresgvfhcaGRNFELLQHFADLLMGernkresgvfHCAERNFELLQIHGAQEYitrktegseedemltgsildwpyleeevvtqndqigrnsprdlkcklpwskifdferesndsdsadsqqrslelgPVEIKLQLNSFQTSCLKVKRLILQKAhsessdrdnfeyirvnqpsivmRSEDLIEEMIKNQVFCIKlgdivgcdfcgkqLLSKAVTSVENNfcrseknspnsklsrYKDFIAdrkqsrkcpkkgiSKADAEIISSLKDcsyglrdrrvktipyennrrsslrinsnlkrkqiedlpggnekkskstsCKVInhqakdeclpqkgdlvrsdssnessQEMVEenqrpnselksqneniaivdsgrdctsleplsvqevshlkwhpsdsgddaihyyhptplhqvlqenergvilqydgtynlcqsnqhcdftlrntisfsshFIFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVdrkdfcppnrnpyhdysvmlencsylnspsfiasslepallklkpgdtvldvgtgsgytaaclgymvrphgkvysLDHMEYLVNFSKENIRKNHAHLLDEGVVNImrtlppqqdasrvnisvepqksgeikfkad
Flexible Loop (DISEMBL)
mtppfasaphgkLGLTGTLHGNDQACTDLLTILYDCIVSRSFHVLQHFADLLMGERNKRESGVFHCAGRNFELLQHFADLLMGERNKRESGVFHCAERNFELLQIHGAQEYITrktegseedeMLTGSILDWPYLEEEVVTqndqigrnsprdlkcklPWSKIFDFeresndsdsadsQQRSLELGPVEIKLQLNSFQTSCLKVKRLILQKahsessdrdnfeyirVNQPSIVMRSEDLIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKAVTSVEnnfcrseknspnsklsrykdfiadrkqsrkcpkkgiskadaeiisslkdcsyglrdrrvktipyennrrsslrinsnlkrkqiedlpggnekkskstSCKVINhqakdeclpqkgdlVRSDSSNESSQEMVeenqrpnselksqNENIAIVDSGRDCTSLEPLSVQEVSHLKWHPSDSGDDAIHYYHPTPLHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKvdrkdfcppnrnPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLppqqdasrvnisvepqksgeikfkad
Low Complexity Region (SEG)
MTPPFASAPhgklgltgtlhgNDQACTDLLTILYDCIVSRSFHVLQHFADLLMGERNKRESGVFHCAGRNFELLQHFADLLMGERNKRESGVFHCAERNFELLQIHGAQEYITRKTEGSEEDEMLTGSILDWPYLEEEVVTQNDQIGRNSPRDLKCKLPWSKIFDFERESNDSDSADSQQRSLELGPVEIKLQLNSFQTSCLKVKRLILQKAHSESSDRDNFEYIRVNQPSIVMRSEDLIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKAVTSVENNFCRSEKNSPNSKLSRYKDFIADRKQSRKCPKKGISKADAEIISSLKDCSYGLRDRRVKTIPYEnnrrsslrinsnlkrKQIEDLPGGNEKKSKSTSCKVINHQAKDECLPQKGDLVRSDSSNESSQEMVEENQRPNSELKSQNENIAIVDSGRDCTSLEPLSVQEVSHLKWHPSDSGDDAIHYYHPTPLHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQKSGEIKFKAD
Disordered region (IsUnstruct)
************LGLTGTLHGNDQACTDLLTILYDCIVSRSFHVLQHFADLLMGERNKRESGVFHCAGRNFELLQHFADLLMGERNKRESGVFHCAERNFELLQIHGAQEYI***************SILDWPYLEEEVVTQN*********DLKCKLPWSKIFDF*********************VEIKLQLNSFQTSCLKVKRLILQK*********NFEYIRVNQPSIVMRSEDLIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKAVTSVENNFC**************************************IISSLKDCSYGLRDRRVK***********************************************************************************************************VSHLKWH****GDDAIHYYHPTPLHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR****************************
Disordered Region (DISOPRED)
********PHGKLGLTGTLHGNDQACTDLLTILYDCIVSRSFHVLQHFADLLMGERNKRESGVFHCAGRNFELLQHFADLLMGERNKRESGVFHCAERNFELLQIHGAQEY************MLTGSILDWPYLEEEVVT*********PRDLKCKLPWSKIFD*********************PVEIKLQLNSFQTSCLKVKRLI**************EYIRVNQPSIVMRSEDLIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKAVTSVEN*******************************************SSLKDCSYGLRDRR**************************************************************************************NENIAIVDSGRDCTSLEPLSVQEVSHLKWHPSDSGDDAIHYYHPTPLH*************YDGTYNLCQSNQHCDFTLRNTISFSSHFIFS*******************ALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQKSGEIKFK**
Disordered Region (DISEMBL)
*********HGKLGLTGTLHGNDQACTDLLTILYDCIVSRSFHVLQHFADLLMGERNKRESGVFHCAGRNFELLQHFADLLMGERNKRESGVFHCAERNFELLQIHGAQEYITRKTEGSEEDEMLTGSILDWPYLEEEVVTQNDQIGRNSPRDLKCKLPWSKIFDFER*************SLELGPVEIKLQLNSFQTSCLKVKRLILQ********RDNFEYIRVNQPSIVMRSEDLIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKAVTSVENNFCRSEKNSPNSKLSRYKDFIADR************KADAEIISSLKDCSYGLRDRRVKTIPYENNRRSSLRINSNLKRKQIED*************CKVINHQAKDECLPQKG**************************KSQNENIAIVDSGRDCTSLEPLSVQEVSHLKWHPSDSGDDAIHYYHPTPLHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQKSGEIKFKAD
Disordered Region (DISPRO)
****F*******LGLTGTLHGNDQACTDLLTILYDCIVSRSFHVLQHFADLLMGERNKRESGVFHCAGRNFELLQHFADLLMGERNKRESGVFHCAERNFELLQIHGAQEYITRKTEGSEEDEMLTGSILDWPYLEEEVVTQNDQIGRNSPRDLKCKLPWSKIFDFER*************SLELGPVEIKLQLNSFQTSCLKVKRLILQKAHSESSDRDNFEYIRVNQPSIVMRSEDLIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKAVTSVENNFC**E**SPNSKLSRYKDFIADRKQSRKCPKKGISKADAEIISSLKDCSYGLRDRRVKTIPYENNRRSSLRINSNLKRKQIEDLPG********TSCKVINHQAKDECLPQKGD**R***********************SQNENIAIVDSGRDCTSLEPLSVQEVSHLKWHPSDSGDDAIHYYHPTPLHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQKSGEIKFKA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPPFASAPHGKLGLTGTLHGNDQACTDLLTILYDCIVSRSFHVLQHFADLLMGERNKRESGVFHCAGRNFELLQHFADLLMGERNKRESGVFHCAERNFELLQIHGAQEYITRKTEGSEEDEMLTGSILDWPYLEEEVVTQNDQIGRNSPRDLKCKLPWSKIFDFERESNDSDSADSQQRSLELGPVEIKLQLNSFQTSCLKVKRLILQKAHSESSDRDNFEYIRVNQPSIVMRSEDLIEEMIKNQVFCIKLGDIVGCDFCGKQLLSKAVTSVENNFCRSEKNSPNSKLSRYKDFIADRKQSRKCPKKGISKADAEIISSLKDCSYGLRDRRVKTIPYENNRRSSLRINSNLKRKQIEDLPGGNEKKSKSTSCKVINHQAKDECLPQKGDLVRSDSSNESSQEMVEENQRPNSELKSQNENIAIVDSGRDCTSLEPLSVQEVSHLKWHPSDSGDDAIHYYHPTPLHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQKSGEIKFKAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	687	2.2.26 [Sep-21-2011]
Q27873	225	Protein-L-isoaspartate O-	yes	N/A	0.171	0.524	0.366	1e-13
Q43209	230	Protein-L-isoaspartate O-	N/A	N/A	0.164	0.491	0.350	6e-13
P15246	227	Protein-L-isoaspartate(D-	yes	N/A	0.168	0.511	0.355	5e-12
P80895	227	Protein-L-isoaspartate(D-	yes	N/A	0.168	0.511	0.355	6e-12
Q9YDA1	260	Protein-L-isoaspartate O-	yes	N/A	0.152	0.403	0.311	9e-11
P22061	227	Protein-L-isoaspartate(D-	yes	N/A	0.168	0.511	0.347	1e-10
Q5RA89	227	Protein-L-isoaspartate(D-	yes	N/A	0.168	0.511	0.347	2e-10
P23506	227	Protein-L-isoaspartate(D-	yes	N/A	0.168	0.511	0.338	2e-10
P22062	227	Protein-L-isoaspartate(D-	yes	N/A	0.168	0.511	0.338	2e-10
Q4R5H0	227	Protein-L-isoaspartate(D-	N/A	N/A	0.171	0.519	0.341	4e-10

>sp|Q27873|PIMT_CAEEL Protein-L-isoaspartate O-methyltransferase OS=Caenorhabditis elegans GN=pcm-1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 2/120 (1%)

Query: 539 MYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           ++ ++   D M  VDR DF P  R PY D    +   + +++P   A++L+     L  G
Sbjct: 22  VFASQRAYDAMKSVDRGDFAP--RAPYEDAPQRIGYNATVSAPHMHAAALDYLQNHLVAG 79

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSGY   C+  MV  +G V  ++HM  LV  S++NIRK+H+  L+ G V I+
Sbjct: 80  AKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQLVELSEKNIRKHHSEQLERGNVIII 139

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7

>sp|Q43209|PIMT_WHEAT Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)

Query: 536 EFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLK- 594
           ++ + +T ++ ++M  +DR  F P    PY D  + +   + +++P   A+ LE  LLK 
Sbjct: 22  QYGVVRTDKVAEVMETIDRALFVPEGFTPYTDSPMPIGYNATISAPHMHATCLE--LLKD 79

Query: 595 -LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
            L+PG   LDVG+GSGY  AC   MV P G+   ++H+  LV  S EN+ ++ A  L
Sbjct: 80  YLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPELVVASTENVERSAAAAL 136

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.

Triticum aestivum (taxid: 4565)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
           KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct: 24  KTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLNEGAK 81

Query: 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
            LDVG+GSG   AC   MV P GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct: 82  ALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3

 Score = 73.2 bits (178), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
           KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct: 24  KTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query: 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
            LDVG+GSG   AC   MV P GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct: 82  ALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q9YDA1|PIMT_AERPE Protein-L-isoaspartate O-methyltransferase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=pcm PE=3 SV=2

 Score = 69.3 bits (168), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 539 MYKTKELRDLMIKVDRKDFCPPNRN--PYHDYSVMLENCSYLNSPSFIASSLEPALLKLK 596
           +  ++ + + M +V R  F PP      Y D  + + +   +++P  +   L+  LL  +
Sbjct: 50  LVTSRRVLEAMARVPRHLFVPPEYRGMAYEDRPLPIGHGQTISAPGVVGRMLQ--LLDPQ 107

Query: 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
           PG+ VLDVG GSGY +A L  +V P G+VY+++ +  L  +++EN+ K 
Sbjct: 108 PGEKVLDVGAGSGYQSALLAELVTPGGRVYAVERIPELAEYARENLEKT 156

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
           KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct: 24  KTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query: 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
            LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct: 82  ALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
           KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct: 24  KTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query: 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
            LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct: 82  ALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPTLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
           KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct: 24  KTDKVFEVMLATDRSHYA--KSNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query: 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
            LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N++K+   LL  G V ++
Sbjct: 82  ALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
           KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct: 24  KTDKVFEVMLATDRSHYA--KSNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query: 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
            LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N++K+   LL  G V ++
Sbjct: 82  ALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)

Query: 539 MYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           + KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G
Sbjct: 22  IIKTDKVFEVMLATDRSHYA--ECNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEG 79

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct: 80  AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPTLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	687
324518734	252	Protein-L-isoaspartate(D-aspartate) O-me	0.168	0.460	0.457	4e-19
312076261	226	protein-L-isoaspartate [Loa loa] gi|3077	0.167	0.508	0.418	2e-17
312065127	320	L-isoaspartate [Loa loa] gi|307769220|gb	0.164	0.353	0.443	4e-17
170594505	319	L-isoaspartate [Brugia malayi] gi|158590	0.161	0.347	0.442	5e-17
393910331	195	protein-L-isoaspartate O-methyltransfera	0.152	0.538	0.448	9e-17
402584662	197	protein-L-isoaspartate O-methyltransfera	0.155	0.543	0.431	3e-16
324511867	293	Protein-L-isoaspartate(D-aspartate) O-me	0.199	0.467	0.370	6e-16
345563839	229	hypothetical protein AOL_s00097g248 [Art	0.167	0.502	0.369	4e-15
312076259	228	L-isoaspartate [Loa loa] gi|307764055|gb	0.196	0.592	0.351	6e-15
452824064	313	protein-L-isoaspartate(D-aspartate) O-me	0.180	0.396	0.373	7e-15

>gi|324518734|gb|ADY47190.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ascaris suum]

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 72/118 (61%), Gaps = 2/118 (1%)

Query: 538 DMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKP 597
           ++++   +   M+ VDR DFCP  RNPY D    +   + +++P   AS+LE     LK 
Sbjct: 47  NLFRDDRVGAAMLNVDRADFCP--RNPYFDNPEPIGYNATISAPHMHASALERLKDHLKE 104

Query: 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
           GDT LDVG+GSGY   C+  MV   GKV  +DH++ LV+ SK NI KNHAHLL  G V
Sbjct: 105 GDTALDVGSGSGYLTVCMAQMVGETGKVVGIDHIKELVDLSKRNIEKNHAHLLTSGRV 162

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|312076261|ref|XP_003140782.1| protein-L-isoaspartate [Loa loa] gi|307764056|gb|EFO23290.1| protein-L-isoaspartate O-methyltransferase [Loa loa]

 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 539 MYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           ++K + ++  M++VDR DFCP  RNPY D    +   + +++P   A++LE     L  G
Sbjct: 22  LFKDERVKVTMLRVDRADFCP--RNPYLDNPEPIGCNATISAPHMHAAALERLKDYLMEG 79

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
           D  LD+G+GSGY   C+ YMV   GKV  ++H++ LV+ S  NI+KNHA+LL+E V+
Sbjct: 80  DRALDIGSGSGYLTTCMAYMVGASGKVVGVEHIKQLVDLSISNIKKNHANLLEERVL 136

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|312065127|ref|XP_003135639.1| L-isoaspartate [Loa loa] gi|307769220|gb|EFO28454.1| protein-L-isoaspartate O-methyltransferase [Loa loa]

 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 538 DMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKP 597
           +++K K +RD M+KVDR DF   +  PY D+ V +   + +++P   ASSLE     LK 
Sbjct: 116 NLFKDKRVRDAMLKVDRADFT--SVTPYGDHPVSIGYGATISAPHMHASSLELLKNHLKE 173

Query: 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE 652
           G+  LDVG+GSGY  AC+  MV   GKV  +DH++ LV+ SK NI K+H  LL +
Sbjct: 174 GNRALDVGSGSGYLTACMAIMVGKTGKVVGIDHIQALVDDSKRNIAKHHGDLLTD 228

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|170594505|ref|XP_001902004.1| L-isoaspartate [Brugia malayi] gi|158590948|gb|EDP29563.1| L-isoaspartate, putative [Brugia malayi]

 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 538 DMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKP 597
           +++K K +RD M+KVDR DF      PY D+ V +   + +++P   ASSLE     LK 
Sbjct: 115 NLFKDKRVRDAMLKVDRADFTAIT--PYGDHPVSIGYGATISAPHMHASSLELLKDHLKE 172

Query: 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
           G+  LDVG+GSGY  AC+  MV   GKV  +DH++ LV+ S+ NI K+HA L 
Sbjct: 173 GNRALDVGSGSGYLTACMAVMVGKXGKVVGIDHIQALVDDSRRNIMKHHADLF 225

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|393910331|gb|EJD75823.1| protein-L-isoaspartate O-methyltransferase, variant [Loa loa]

 Score = 95.5 bits (236), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 48/107 (44%), Positives = 69/107 (64%), Gaps = 2/107 (1%)

Query: 549 MIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGS 608
           M++VDR DFCP  RNPY D    +   + +++P   A++LE     L  GD  LD+G+GS
Sbjct: 1   MLRVDRADFCP--RNPYLDNPEPIGCNATISAPHMHAAALERLKDYLMEGDRALDIGSGS 58

Query: 609 GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
           GY   C+ YMV   GKV  ++H++ LV+ S  NI+KNHA+LL+E V+
Sbjct: 59  GYLTTCMAYMVGASGKVVGVEHIKQLVDLSISNIKKNHANLLEERVL 105

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|402584662|gb|EJW78603.1| protein-L-isoaspartate O-methyltransferase [Wuchereria bancrofti]

 Score = 93.6 bits (231), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 2/109 (1%)

Query: 549 MIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGS 608
           M++VDR DFCP  RNPY D    +   + +++P   A++LE     L  GD  LD+G+GS
Sbjct: 3   MLRVDRADFCP--RNPYLDNPEPIGCNATISAPHMHAAALERLKDHLTEGDKALDIGSGS 60

Query: 609 GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI 657
           GY   C+ YMV   GKV  ++H+  LV+ S  NI+KNHA+LL+  V+ +
Sbjct: 61  GYLTTCMAYMVGASGKVVGVEHIRQLVDLSITNIKKNHANLLEGRVLMV 109

Source: Wuchereria bancrofti

Species: Wuchereria bancrofti

Genus: Wuchereria

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|324511867|gb|ADY44933.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ascaris suum]

 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 80/143 (55%), Gaps = 6/143 (4%)

Query: 539 MYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLK--LK 596
           ++  + ++D M+ VDR DF P    PY D+ V +   + +++P   A++LE  LLK  LK
Sbjct: 84  LFADQRVKDAMLSVDRGDFAP--STPYGDHPVSIGYSATISAPHMHATALE--LLKDHLK 139

Query: 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN 656
            GD  LDVG+GSGY  AC+  MV   GKV  ++H+  LVN S  N+ K+HA L+  G + 
Sbjct: 140 EGDKALDVGSGSGYLTACMAIMVGKSGKVIGIEHISELVNDSIANVEKHHADLISSGRIL 199

Query: 657 IMRTLPPQQDASRVNISVEPQKS 679
            +     + D  +   S  P K+
Sbjct: 200 FVEGDGRKGDGRKGYASEAPYKA 222

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|345563839|gb|EGX46822.1| hypothetical protein AOL_s00097g248 [Arthrobotrys oligospora ATCC 24927]

 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 73/119 (61%), Gaps = 4/119 (3%)

Query: 543 KELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVL 602
           KE  + M KVDR  F P   NPY D    +   + +++P   + + E  +  LKPG  +L
Sbjct: 26  KETYEAMKKVDRAHFAP--ANPYQDAPQPIGYSATISAPHMHSHACEEIIEYLKPGAAIL 83

Query: 603 DVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN--HAHLLDEGVVNIMR 659
           DVG+GSGY  A + +MV+P G++  ++H++ LV+ S +N+RK+  H+  LD+G + I++
Sbjct: 84  DVGSGSGYLVAVMAHMVQPGGRIVGIEHIQELVDLSIKNLRKDATHSAWLDDGTITIIK 142

Source: Arthrobotrys oligospora ATCC 24927

Species: Arthrobotrys oligospora

Genus: Orbilia

Family: Orbiliaceae

Order: Orbiliales

Class: Orbiliomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|312076259|ref|XP_003140781.1| L-isoaspartate [Loa loa] gi|307764055|gb|EFO23289.1| protein-L-isoaspartate O-methyltransferase [Loa loa]

 Score = 89.4 bits (220), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 13/148 (8%)

Query: 510 FSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYS 569
           F R   N  +   L  VG +          Y+ +E+   M+ VDR DFCP  +NPY D  
Sbjct: 3   FPRNTSNAMLVDFLKKVGHI--------QDYRVEEV---MLGVDRADFCP--QNPYQDCP 49

Query: 570 VMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
             +   + +++P   A +LE     L+ G+TVLD+G+GSGY   C+  MV   G+V  +D
Sbjct: 50  QQIGYNATISAPHMHALALELLKGHLRDGNTVLDIGSGSGYLTVCMALMVGERGRVIGID 109

Query: 630 HMEYLVNFSKENIRKNHAHLLDEGVVNI 657
           H++ LV+ S  NI K+H  LL +G + +
Sbjct: 110 HIKELVDLSINNINKHHGDLLMDGRITM 137

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|452824064|gb|EME31069.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Galdieria sulphuraria]

 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 2/126 (1%)

Query: 533 CVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPAL 592
            + E  + KT+ +   ++ VDR  FC     PY D    +   + +++P    + LE   
Sbjct: 105 ALKENGLIKTERVERTLLAVDRGHFC--KYRPYEDAPQPIGWNATISAPHMHVTCLELLN 162

Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE 652
             LKPG   LD+G+GSGY  AC+G MVRP G V  ++H+  L   S ENI ++   LL+E
Sbjct: 163 EHLKPGSKALDIGSGSGYLTACMGIMVRPKGLVVGIEHIPGLAQQSLENIERSQKSLLEE 222

Query: 653 GVVNIM 658
           GVV +M
Sbjct: 223 GVVRVM 228

Source: Galdieria sulphuraria

Species: Galdieria sulphuraria

Genus: Galdieria

Family: Cyanidiaceae

Order: Cyanidiales

Class: Bangiophyceae

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	687
WB|WBGene00003954	225	pcm-1 [Caenorhabditis elegans	0.171	0.524	0.366	4e-14
UNIPROTKB|G3MZZ6	228	PCMT1 "Protein-L-isoaspartate	0.168	0.508	0.355	2.7e-12
UNIPROTKB|P15246	227	PCMT1 "Protein-L-isoaspartate(	0.168	0.511	0.355	2.7e-12
UNIPROTKB|J9JIK8	208	PCMT1 "Protein-L-isoaspartate	0.168	0.557	0.355	3.4e-12
UNIPROTKB|P80895	227	PCMT1 "Protein-L-isoaspartate(	0.168	0.511	0.355	3.4e-12
UNIPROTKB|F1N9Y6	150	PCMT1 "Protein-L-isoaspartate	0.168	0.773	0.330	1.4e-10
UNIPROTKB|P22061	227	PCMT1 "Protein-L-isoaspartate(	0.168	0.511	0.347	1.6e-10
MGI|MGI:97502	227	Pcmt1 "protein-L-isoaspartate	0.168	0.511	0.338	3.1e-10
RGD|3268	227	Pcmt1 "protein-L-isoaspartate	0.168	0.511	0.338	3.1e-10
UNIPROTKB|P22062	227	Pcmt1 "Protein-L-isoaspartate(	0.168	0.511	0.338	3.1e-10

WB|WBGene00003954 pcm-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 192 (72.6 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 44/120 (36%), Positives = 67/120 (55%)

Query:   539 MYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
             ++ ++   D M  VDR DF P  R PY D    +   + +++P   A++L+     L  G
Sbjct:    22 VFASQRAYDAMKSVDRGDFAP--RAPYEDAPQRIGYNATVSAPHMHAAALDYLQNHLVAG 79

Query:   599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
                LDVG+GSGY   C+  MV  +G V  ++HM  LV  S++NIRK+H+  L+ G V I+
Sbjct:    80 AKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQLVELSEKNIRKHHSEQLERGNVIII 139

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006479 "protein methylation" evidence=IEA;IDA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA;IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0018197 "peptidyl-aspartic acid modification" evidence=IDA

GO:0033555 "multicellular organismal response to stress" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042594 "response to starvation" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

UNIPROTKB|G3MZZ6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 42/118 (35%), Positives = 64/118 (54%)

Query:   541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
             KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct:    24 KTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLNEGAK 81

Query:   601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV P GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct:    82 ALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLV 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|P15246 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 42/118 (35%), Positives = 64/118 (54%)

Query:   541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
             KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct:    24 KTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLNEGAK 81

Query:   601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV P GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct:    82 ALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLV 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|J9JIK8 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 42/118 (35%), Positives = 64/118 (54%)

Query:   541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
             KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct:     5 KTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 62

Query:   601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV P GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct:    63 ALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLV 120

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 42/118 (35%), Positives = 64/118 (54%)

Query:   541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
             KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct:    24 KTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query:   601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV P GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct:    82 ALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLV 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|F1N9Y6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 39/118 (33%), Positives = 64/118 (54%)

Query:   541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
             K+ ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct:     5 KSDKVFEVMLATDRCHYA--KYNPYMDSPQSIGFQATISAPHMHAYALELLSDQLHEGAK 62

Query:   601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV P G+V  +DH++ LV+ S  N++K+   LL  G V ++
Sbjct:    63 ALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPTLLSSGRVKLI 120

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 41/118 (34%), Positives = 63/118 (53%)

Query:   541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
             KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct:    24 KTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query:   601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct:    82 ALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 139

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=TAS

GO:0030091 "protein repair" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006479 "protein methylation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:97502 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 40/118 (33%), Positives = 63/118 (53%)

Query:   541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
             KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct:    24 KTDKVFEVMLATDRSHYA--KSNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query:   601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N++K+   LL  G V ++
Sbjct:    82 ALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLV 139

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006479 "protein methylation" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=ISO

GO:0046500 "S-adenosylmethionine metabolic process" evidence=ISO

RGD|3268 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 40/118 (33%), Positives = 63/118 (53%)

Query:   541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
             KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct:    24 KTDKVFEVMLATDRSHYA--KSNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query:   601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N++K+   LL  G V ++
Sbjct:    82 ALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLV 139

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA;ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006479 "protein methylation" evidence=ISO

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IDA

GO:0046500 "S-adenosylmethionine metabolic process" evidence=IDA

UNIPROTKB|P22062 Pcmt1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 40/118 (33%), Positives = 63/118 (53%)

Query:   541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
             KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G  
Sbjct:    24 KTDKVFEVMLATDRSHYA--KSNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 81

Query:   601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N++K+   LL  G V ++
Sbjct:    82 ALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLV 139

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.77	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	687
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	1e-22
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	1e-17
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	2e-16
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	3e-13
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	2e-12
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	6e-11
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	4e-07
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	2e-06
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	2e-06
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	7e-06
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	2e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-05
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	5e-05
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	5e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	1e-04
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	1e-04
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	1e-04
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	2e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	3e-04
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	8e-04
TIGR04188	363	TIGR04188, methyltr_grsp, methyltransferase, ATP-g	0.001
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	0.003

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 95.9 bits (239), Expect = 1e-22
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 541 KTKELRDLMIKVDRKDF--CPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
            + ++ + M+ VDR++F         Y D  + +     +++P   A  LE  LL+LKPG
Sbjct: 17  ASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMMLE--LLELKPG 74

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
             VL++G+GSGY  AC   MV   G V S++H+  LV  ++ N+ K    
Sbjct: 75  MRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGLE 124

Length = 210

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 81.8 bits (202), Expect = 1e-17
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 541 KTKELRDLMIKVDRKDFCPP--NRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           K+K + D ++ V R++F P       Y D  + +     +++P  +A   E  LL+LKPG
Sbjct: 21  KSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTE--LLELKPG 78

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
             VL++GTGSGY AA L  +V   G V S++ +  L   ++  +RK
Sbjct: 79  MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 13/108 (12%)

Query: 542 TKELRDLMIKVDRKDFCPPNRNPYHDYSVM-----LENCSYLNSPSFIASSLEPALLKLK 596
            + +    + V R+ F P     Y   +       +     +++P  +A  L+  LL+LK
Sbjct: 17  DERVLKAFLAVPRELFVPA---AYKHLAYEDRALPIGCGQTISAPHMVARMLQ--LLELK 71

Query: 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           PGD VL++GTGSGY AA L  +V   G+V S++ +E L   ++ N+  
Sbjct: 72  PGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLET 116

Length = 209

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 13/107 (12%)

Query: 543 KELRDLMIKVDRKDFCPPNRNPYHDYSVM-----LENCSYLNSPSFIASSLEPALLKLKP 597
           + + + +    R+ F P     +   +       +     ++ P  +A   E  LL+LKP
Sbjct: 24  ERVLEAIEATPRELFVPE---AFKHKAYENRALPIGCGQTISQPYMVARMTE--LLELKP 78

Query: 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           GD VL++GTGSGY AA L ++VR   +V+S++ ++ L   +K  +++
Sbjct: 79  GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQ 122

Length = 212

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           K+K++ D ++KV R  F P       Y D  + +     +++   +A   E  LL LK G
Sbjct: 20  KSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCE--LLDLKEG 77

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
             VL++GTGSGY AA +  +V   GKV +++ +  L   +K+ ++K
Sbjct: 78  MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK 123

Length = 212

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 62.1 bits (151), Expect = 6e-11
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRN--PYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           K++ ++  M+ V R++F  P      Y D  + L   + +++P  +A   E  L++ +PG
Sbjct: 16  KSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCE--LIEPRPG 73

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
             +L+VGTGSGY AA     +   GKVY+++ ++ L  ++ +NI      L   GVV + 
Sbjct: 74  MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE----RLGYWGVVEVY 129

Query: 659 R 659
            
Sbjct: 130 H 130

Length = 205

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 17/115 (14%)

Query: 524 ALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCP--PNRNPYHDYSVML----EN--- 574
           ALV  L         + ++  +      V R  F P  P    Y     ++    E+   
Sbjct: 7   ALVDELRED-----GVIRSPRVEAAFRTVPRHLFAPGAPLEKAYAANRAVVTKRDEDGAA 61

Query: 575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
            S +++P   A  LE A   ++PG  VL++G+G GY AA L  +V P G+V ++D
Sbjct: 62  LSSVSAPHIQAMMLEQA--GVEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVD 113

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 594 KLKPGDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
            LK G TVLDVG GSG     AA LG       KV  +D     V  ++EN R N   LL
Sbjct: 159 LLKKGKTVLDVGCGSGILAIAAAKLG-----AKKVVGVDIDPQAVEAARENARLNGVELL 213

Query: 651 DE 652
            +
Sbjct: 214 VQ 215

Length = 300

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 595 LKPGDTVLDVGTGSGY---TAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
           +KPG+TVLDVG GSG     A  LG       KV  +D     V  +KEN   N   
Sbjct: 158 VKPGETVLDVGCGSGILAIAALKLG-----AKKVVGVDIDPVAVRAAKENAELNGVE 209

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD-HMEYLVNFSKENIRKNHAHL 649
           A L + PG  VL+ GTGSG   A L   V P G V + +   ++    ++EN+ +     
Sbjct: 88  ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSE---FG 143

Query: 650 LDEGV 654
           L + V
Sbjct: 144 LGDRV 148

Length = 256

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           AL +LKPG+TVLD+G+G G+        V P GKV  +D    ++  ++ N RK
Sbjct: 71  ALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK 124

Length = 272

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
           LK G  VLD+G G+GY    L   + P  +V  +D  E  +  +KEN +K 
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKL 51

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640
            LL ++PGD VLDVG G G  A  L   V P G+V  +D  E ++  +KE
Sbjct: 13  ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE 62

Length = 241

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           + L+ +PGD + D+G G+G +      +  P G+V +++  E  +   + N  +
Sbjct: 28  SKLRPRPGDRLWDIGAGTG-SITIEWALAGPSGRVIAIERDEEALELIERNAAR 80

Length = 187

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 589 EPA--------LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640
           EPA            K GD VL+VGTGSG  A       +   KV  +D   Y V  +K 
Sbjct: 7   EPAEDSFLLAENAVDKKGDRVLEVGTGSGIVAI---VAAKNGKKVVGVDINPYAVECAKC 63

Query: 641 NIRKNH 646
           N + N+
Sbjct: 64  NAKLNN 69

Length = 188

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 585 ASSLEPALLKL-KPGDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640
              LE AL KL  PG TVLDVG GSG     AA LG       KV ++D     V  ++E
Sbjct: 107 RLCLE-ALEKLVLPGKTVLDVGCGSGILAIAAAKLG-----AKKVLAVDIDPQAVEAARE 160

Query: 641 NIRKNHAHL 649
           N   N   L
Sbjct: 161 NAELNGVEL 169

Length = 250

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L +L     +L++GT  GY+A  +   +   G++ +++  E     ++EN+ +
Sbjct: 54  LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE 106

Length = 219

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L+L+ GD +LD+G G+G        +V   GKVY++D  E  +N ++ N  K
Sbjct: 36  LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87

Length = 198

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH-- 648
           + L+L+PGD + D+G G+G        +V P+G+VY+++     ++  + N+R+      
Sbjct: 13  SKLRLRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDLIERNLRRFGVSNI 71

Query: 649 -LLDEGVVNIMRTLPPQQDA 667
            +++         L P  DA
Sbjct: 72  VIVEGDAPEAPEDLLPDPDA 91

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 588 LEPALLKLKPGD-TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
           +E AL  L   D  +LD+GTGSG  A  L     P  +V ++D     +  ++EN  +N
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALAKE-GPDAEVIAVDISPDALALARENAERN 157

Length = 280

>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 7/37 (18%)

Query: 586 SSLEPAL-------LKLKPGDTVLDVGTGSGYTAACL 615
           SS +P+L       L ++ G  VL++GTG+GY+AA L
Sbjct: 89  SSTQPSLVARMLEALDVEDGHRVLEIGTGTGYSAALL 125

Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
           K G+ V+D+  G G  +  +    +   +VY+++     V + KENI+ N      EGV+
Sbjct: 99  KEGEVVVDMFAGIGPFSIPIAKHSKA-KRVYAVELNPEAVKYLKENIKLNKV----EGVI 153

Query: 656 NIM----RTLPPQQDASRV 670
           + +    R +  +  A RV
Sbjct: 154 SPILGDVRDVILEGVADRV 172

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	687
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.94
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.93
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.9
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.88
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.87
KOG1661|consensus	237		99.86
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.82
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.76
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.73
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.22
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.08
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.07
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.07
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.06
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.05
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.04
COG4122	219	Predicted O-methyltransferase [General function pr	99.03
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.02
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.02
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.01
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.98
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.97
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.97
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.96
PRK07402	196	precorrin-6B methylase; Provisional	98.95
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.94
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.94
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.93
PLN02476	278	O-methyltransferase	98.93
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.92
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.89
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.89
COG2890	280	HemK Methylase of polypeptide chain release factor	98.86
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.86
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.85
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.85
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.83
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.82
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.81
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.81
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.8
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.8
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.77
PLN02244	340	tocopherol O-methyltransferase	98.76
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.76
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.75
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.74
PRK11207	197	tellurite resistance protein TehB; Provisional	98.72
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.72
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.72
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.72
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.71
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.71
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.71
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.7
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.69
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.68
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.68
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.67
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.66
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.66
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.66
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.66
PRK08317	241	hypothetical protein; Provisional	98.65
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.65
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.65
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.63
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.62
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.62
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.62
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.61
PRK14967	223	putative methyltransferase; Provisional	98.61
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.61
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.6
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.6
PRK04266	226	fibrillarin; Provisional	98.59
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.58
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.58
PRK12335	287	tellurite resistance protein TehB; Provisional	98.56
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.56
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.54
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.54
PRK04457	262	spermidine synthase; Provisional	98.54
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.53
KOG2904|consensus	328		98.52
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.52
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.51
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.51
PLN02672	1082	methionine S-methyltransferase	98.51
PRK14968	188	putative methyltransferase; Provisional	98.49
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.49
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.47
PRK06202	232	hypothetical protein; Provisional	98.47
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.46
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.46
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.45
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.45
PLN02336	475	phosphoethanolamine N-methyltransferase	98.45
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.44
COG4123	248	Predicted O-methyltransferase [General function pr	98.44
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.44
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.44
KOG0820|consensus	315		98.43
PLN03075	296	nicotianamine synthase; Provisional	98.42
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.4
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.38
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.37
KOG1540|consensus	296		98.37
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.37
PRK05785	226	hypothetical protein; Provisional	98.36
PTZ00146	293	fibrillarin; Provisional	98.36
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.34
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.34
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.34
KOG1663|consensus	237		98.34
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.34
KOG1270|consensus	282		98.33
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.32
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.31
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.3
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.28
PRK00811	283	spermidine synthase; Provisional	98.28
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.27
PRK06922	677	hypothetical protein; Provisional	98.27
KOG2915|consensus	314		98.24
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.24
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.23
TIGR03438	301	probable methyltransferase. This model represents	98.23
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.2
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.2
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.19
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.17
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.17
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.16
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.15
PLN02490	340	MPBQ/MSBQ methyltransferase	98.13
TIGR00438	188	rrmJ cell division protein FtsJ.	98.1
PLN02336	475	phosphoethanolamine N-methyltransferase	98.07
PHA03412	241	putative methyltransferase; Provisional	98.07
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.07
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.06
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.05
PHA03411	279	putative methyltransferase; Provisional	98.04
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.03
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.03
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.02
PLN02366	308	spermidine synthase	98.02
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.97
KOG1541|consensus	270		97.95
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.95
KOG2187|consensus	534		97.94
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.92
KOG3420|consensus	185		97.92
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.87
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.86
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.86
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.81
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.8
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.79
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.78
PRK01581	374	speE spermidine synthase; Validated	97.78
PRK03612	521	spermidine synthase; Provisional	97.76
PF13679	141	Methyltransf_32: Methyltransferase domain	97.74
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.73
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.72
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.71
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.66
KOG1499|consensus	346		97.63
PRK04148	134	hypothetical protein; Provisional	97.62
KOG3191|consensus	209		97.62
KOG1271|consensus	227		97.61
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.56
KOG1500|consensus	517		97.55
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.52
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.46
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.42
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.4
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.37
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.37
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.26
COG2520	341	Predicted methyltransferase [General function pred	97.22
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.22
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.22
PLN02823	336	spermine synthase	97.21
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.1
KOG2899|consensus	288		97.09
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.08
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.06
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.03
COG4076	252	Predicted RNA methylase [General function predicti	97.03
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.92
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.84
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.75
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.74
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	96.67
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.66
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.65
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.63
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.62
KOG4300|consensus	252		96.62
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.57
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.56
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.54
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.51
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.44
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.31
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.27
KOG3010|consensus	261		96.24
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.14
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.14
KOG1501|consensus	636		96.12
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.11
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.07
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.02
KOG1122|consensus	460		95.99
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.86
KOG2730|consensus	263		95.81
COG3897	218	Predicted methyltransferase [General function pred	95.64
PRK10742	250	putative methyltransferase; Provisional	95.63
PRK00536	262	speE spermidine synthase; Provisional	95.54
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.44
PHA01634	156	hypothetical protein	95.27
KOG1975|consensus	389		95.25
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.21
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	95.15
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.09
COG2521	287	Predicted archaeal methyltransferase [General func	94.91
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	94.65
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	94.23
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	94.23
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.23
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.12
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	93.97
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	93.77
PRK11524	284	putative methyltransferase; Provisional	93.44
KOG2361|consensus	264		93.41
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	92.66
KOG1596|consensus	317		92.53
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	92.43
COG1565	370	Uncharacterized conserved protein [Function unknow	92.21
PRK13699	227	putative methylase; Provisional	91.49
KOG4589|consensus	232		91.4
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	91.21
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	90.82
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	90.02
KOG2651|consensus	476		89.21
COG4262	508	Predicted spermidine synthase with an N-terminal m	89.09
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	89.09
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	88.96
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	88.49
KOG0024|consensus	354		87.66
KOG1227|consensus	351		87.3
COG0286	489	HsdM Type I restriction-modification system methyl	86.97
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	86.95
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	86.83
PLN02232	160	ubiquinone biosynthesis methyltransferase	86.58
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	85.75
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	85.74
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	85.15
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	84.79
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	83.38
COG4798	238	Predicted methyltransferase [General function pred	82.79
KOG3115|consensus	249		82.4
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	82.37
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	81.12
KOG2360|consensus	413		80.79
KOG2198|consensus	375		80.75
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	80.29

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6e-26  Score=223.29  Aligned_cols=143  Identities=24%  Similarity=0.376  Sum_probs=131.7

Q ss_pred             hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEc
Q psy14969        528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVG  605 (687)
Q Consensus       528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIG  605 (687)
                      .|++++|+..| +.++++++||++|||+.|+|+.  ..+|.|.++|++.|++|+.|+|+++|+++|  .+++|++|||||
T Consensus         4 ~~l~~~lr~~~-i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L--~~~~g~~VLEIG   80 (209)
T COG2518           4 RMLVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLL--ELKPGDRVLEIG   80 (209)
T ss_pred             HHHHHHHHHcC-CCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHh--CCCCCCeEEEEC
Confidence            46679999999 6779999999999999999998  569999999999999999999999999999  799999999999


Q ss_pred             CCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-----CCCCccEEEEEecCCCcC
Q psy14969        606 TGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-----PQQDASRVNISVEPQKSG  680 (687)
Q Consensus       606 CGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-----edaPFDLILVVfAP~K~g  680 (687)
                      |||||.|+.||++++   +|++||+++.+++.|++|++..|+     .++.+++||+     +..|||+|+++++.....
T Consensus        81 tGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~-----~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP  152 (209)
T COG2518          81 TGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGY-----ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP  152 (209)
T ss_pred             CCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCC-----CceEEEECCcccCCCCCCCcCEEEEeeccCCCC
Confidence            999999999999987   999999999999999999999998     4589998885     468999999998876654


Q ss_pred             c
Q psy14969        681 E  681 (687)
Q Consensus       681 E  681 (687)
                      +
T Consensus       153 ~  153 (209)
T COG2518         153 E  153 (209)
T ss_pred             H
Confidence            3

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.93  E-value=1.5e-25  Score=218.27  Aligned_cols=142  Identities=27%  Similarity=0.390  Sum_probs=120.2

Q ss_pred             hchhcCCCCCCHHHHHHHHhCCCccCCCCCC--CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCcc
Q psy14969        532 LCVSEFDMYKTKELRDLMIKVDRKDFCPPNR--NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSG  609 (687)
Q Consensus       532 QqLRsnG~IdS~EV~qAMraVPReaFVP~gy--qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTG  609 (687)
                      ++++..|.+.+++|++||++|||+.|+|..+  .+|.|.+++++.+++++.|.++++++++|  .+++|++|||||||||
T Consensus         7 ~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L--~l~pg~~VLeIGtGsG   84 (209)
T PF01135_consen    7 DNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEAL--DLKPGDRVLEIGTGSG   84 (209)
T ss_dssp             HHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHT--TC-TT-EEEEES-TTS
T ss_pred             HHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHH--hcCCCCEEEEecCCCc
Confidence            6777888799999999999999999999974  69999999999999999999999999999  7999999999999999


Q ss_pred             HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEecCCCcC
Q psy14969        610 YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVEPQKSG  680 (687)
Q Consensus       610 YLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfAP~K~g  680 (687)
                      |+|+.||+++++.++|++||+++.+++.|+++++..+.     .++.++.||+.     ..|||+|++.++..+..
T Consensus        85 Y~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-----~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip  155 (209)
T PF01135_consen   85 YQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-----DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP  155 (209)
T ss_dssp             HHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-----HSEEEEES-GGGTTGGG-SEEEEEESSBBSS--
T ss_pred             HHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-----CceeEEEcchhhccccCCCcCEEEEeeccchHH
Confidence            99999999998889999999999999999999999987     47899998853     58999999988766543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.90  E-value=6.7e-23  Score=196.83  Aligned_cols=142  Identities=25%  Similarity=0.337  Sum_probs=126.4

Q ss_pred             HhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEE
Q psy14969        527 GMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDV  604 (687)
Q Consensus       527 NlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDI  604 (687)
                      ..||+++++..+ ++|++|++||+.|||+.|+|..  ..+|.|.+++++.|++++.|.+++++++.+  .+.++.+||||
T Consensus         7 ~~~v~~l~~~~~-v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l--~~~~g~~VLdI   83 (212)
T PRK13942          7 RRVIEELIREGY-IKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELL--DLKEGMKVLEI   83 (212)
T ss_pred             HHHHHHHHhcCC-CCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHc--CCCCcCEEEEE
Confidence            356766666655 9999999999999999999997  469999999999999999999999999998  78899999999


Q ss_pred             cCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEecC
Q psy14969        605 GTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVEP  676 (687)
Q Consensus       605 GCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfAP  676 (687)
                      ||||||+|+.+++.+++.++|+++|+++++++.|+++++..++     .++.++.+|+.     ..+||+|++.++-
T Consensus        84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-----~~v~~~~gd~~~~~~~~~~fD~I~~~~~~  155 (212)
T PRK13942         84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-----DNVEVIVGDGTLGYEENAPYDRIYVTAAG  155 (212)
T ss_pred             CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence            9999999999999987678999999999999999999999886     57899999863     4689999887653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.88  E-value=1.1e-21  Score=186.83  Aligned_cols=142  Identities=25%  Similarity=0.407  Sum_probs=124.0

Q ss_pred             hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCC--CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEc
Q psy14969        528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNR--NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVG  605 (687)
Q Consensus       528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gy--qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIG  605 (687)
                      .||+ +++..+.+.+++|++||++|||+.|+|+.+  .+|.|.+++++.+++++.|.+++.+++.+  .+.++.+|||||
T Consensus         4 ~lv~-~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l--~~~~~~~VLDiG   80 (205)
T PRK13944          4 RLVE-ELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELI--EPRPGMKILEVG   80 (205)
T ss_pred             HHHH-HHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhc--CCCCCCEEEEEC
Confidence            3554 566666689999999999999999999884  59999999999999999999999999988  678899999999


Q ss_pred             CCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEecC
Q psy14969        606 TGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVEP  676 (687)
Q Consensus       606 CGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfAP  676 (687)
                      ||+||+++.+++++++.++|+|+|+++.+++.|++++...++    ..++.++.+|+.     ..+||.|++..+.
T Consensus        81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~  152 (205)
T PRK13944         81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYHGDGKRGLEKHAPFDAIIVTAAA  152 (205)
T ss_pred             cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEECCcccCCccCCCccEEEEccCc
Confidence            999999999999986678999999999999999999999886    456888888754     3579999887653

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.87  E-value=2e-21  Score=185.36  Aligned_cols=143  Identities=27%  Similarity=0.383  Sum_probs=124.7

Q ss_pred             hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEc
Q psy14969        528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVG  605 (687)
Q Consensus       528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIG  605 (687)
                      .|| ++++..+.+.+++|.+||+.|||+.|+|..  ..+|.+.+++++.+++++.|.+++.+++++  .+.++.+|||||
T Consensus         9 ~~v-~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l--~~~~~~~VLDiG   85 (215)
T TIGR00080         9 ALI-DKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELL--ELKPGMKVLEIG   85 (215)
T ss_pred             HHH-HHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHh--CCCCcCEEEEEC
Confidence            344 455555568999999999999999999987  469999999999999999999999999998  688999999999


Q ss_pred             CCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEecCCC
Q psy14969        606 TGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVEPQK  678 (687)
Q Consensus       606 CGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfAP~K  678 (687)
                      ||+||+++.|++.+++.++|+|+|+++.+++.|+++++..++     .++.++.+|+.     ..+||+|++..++..
T Consensus        86 ~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~  158 (215)
T TIGR00080        86 TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-----DNVIVIVGDGTQGWEPLAPYDRIYVTAAGPK  158 (215)
T ss_pred             CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCeEEEECCcccCCcccCCCCEEEEcCCccc
Confidence            999999999999987668899999999999999999999886     46888888864     357999988765544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG1661|consensus

Probab=99.86  E-value=1.3e-21  Score=194.42  Aligned_cols=161  Identities=27%  Similarity=0.423  Sum_probs=145.1

Q ss_pred             cCccCCC-chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHH
Q psy14969        514 MKNTAVQ-PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEP  590 (687)
Q Consensus       514 Mswrcsg-AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLEl  590 (687)
                      |+|+..+ .|++|+     ++|+.+++|++..+.+||++++|..|.|..  +.+|.|.|..+|.+.++++|+|++.++++
T Consensus         1 m~~~s~gs~n~~LI-----d~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~   75 (237)
T KOG1661|consen    1 MGWVSSGSDNDDLI-----DNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEY   75 (237)
T ss_pred             CCccccCcchHHHH-----HHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHH
Confidence            8899888 899999     999999999999999999999999999987  56999999999999999999999999999


Q ss_pred             hhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEE-EEEeCCHHHHHHHHHHHHHcC-----CCccCCCcEEEEEcC---
Q psy14969        591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKV-YSLDHMEYLVNFSKENIRKNH-----AHLLDEGVVNIMRTL---  661 (687)
Q Consensus       591 LkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrV-tGIDISpeAVE~ARKNLKkaG-----~~VaSsgRI~LI~GD---  661 (687)
                      |.++++||.+.||||+||||+|+++++++++.|.+ +|||+.+++|+++++++.+.-     ..-+..+++.++.||   
T Consensus        76 L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~  155 (237)
T KOG1661|consen   76 LDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK  155 (237)
T ss_pred             HHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc
Confidence            97779999999999999999999999998776664 999999999999999999876     334457889999888   


Q ss_pred             --CCCCCccEEEEEecCCCc
Q psy14969        662 --PPQQDASRVNISVEPQKS  679 (687)
Q Consensus       662 --AedaPFDLILVVfAP~K~  679 (687)
                        ++..|||+|.+.++-.+.
T Consensus       156 g~~e~a~YDaIhvGAaa~~~  175 (237)
T KOG1661|consen  156 GYAEQAPYDAIHVGAAASEL  175 (237)
T ss_pred             cCCccCCcceEEEccCcccc
Confidence              457999999998776554

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.82  E-value=4.2e-19  Score=168.09  Aligned_cols=140  Identities=24%  Similarity=0.340  Sum_probs=123.1

Q ss_pred             HHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeE
Q psy14969        524 ALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTV  601 (687)
Q Consensus       524 gLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RV  601 (687)
                      +..+.||+ +|+..+ +.++.+.+||+.+||+.|+|..  ..+|.|.+++++.|++++.|.+.+++++.+  .+.++.+|
T Consensus         7 ~~~~~~v~-~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l--~~~~~~~V   82 (212)
T PRK00312          7 ERFARLVL-RLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELL--ELKPGDRV   82 (212)
T ss_pred             HHHHHHHH-HHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhc--CCCCCCEE
Confidence            34556775 999999 8999999999999999999976  469999999999999999999999999988  68889999


Q ss_pred             EEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEec
Q psy14969        602 LDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVE  675 (687)
Q Consensus       602 LDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfA  675 (687)
                      ||||||+||.+..++++.+   +|+++|+++.+++.|++++++.++     .++.++.++..     ..+||+|++..+
T Consensus        83 LeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~I~~~~~  153 (212)
T PRK00312         83 LEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGL-----HNVSVRHGDGWKGWPAYAPFDRILVTAA  153 (212)
T ss_pred             EEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCC-----CceEEEECCcccCCCcCCCcCEEEEccC
Confidence            9999999999999998864   899999999999999999999876     35888888753     257999988754

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.76  E-value=7.5e-18  Score=173.91  Aligned_cols=135  Identities=21%  Similarity=0.314  Sum_probs=116.9

Q ss_pred             hchhcCCCCCCHHHHHHHHhCCCccCCCCCC---CCCCCCCccc-cCC---cccCcHHHHHHHHHHhhhcCCCCCeEEEE
Q psy14969        532 LCVSEFDMYKTKELRDLMIKVDRKDFCPPNR---NPYHDYSVML-ENC---SYLNSPSFIASSLEPALLKLKPGDTVLDV  604 (687)
Q Consensus       532 QqLRsnG~IdS~EV~qAMraVPReaFVP~gy---qAYsD~pLPI-G~G---qTISaP~VvAlLLElLkedLkpG~RVLDI  604 (687)
                      ..++..| +++ +|++||++|||+.|+|..+   .+|.|.++++ ..|   ++++.|.+.+.+++.+  .++++.+||||
T Consensus        12 ~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L--~i~~g~~VLDI   87 (322)
T PRK13943         12 WILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWV--GLDKGMRVLEI   87 (322)
T ss_pred             HHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhc--CCCCCCEEEEE
Confidence            6899999 677 9999999999999999874   3789999886 555   5888999999999987  68889999999


Q ss_pred             cCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEec
Q psy14969        605 GTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVE  675 (687)
Q Consensus       605 GCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfA  675 (687)
                      |||+|++++.+++..++.+.|+|+|+++++++.|+++++..++     .++.++.+|+.     ..+||+|++.++
T Consensus        88 G~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-----~nV~~i~gD~~~~~~~~~~fD~Ii~~~g  158 (322)
T PRK13943         88 GGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-----ENVIFVCGDGYYGVPEFAPYDVIFVTVG  158 (322)
T ss_pred             eCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCChhhcccccCCccEEEECCc
Confidence            9999999999999886557899999999999999999999886     46888888853     357999987644

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.73  E-value=9.8e-19  Score=172.57  Aligned_cols=154  Identities=16%  Similarity=0.186  Sum_probs=114.1

Q ss_pred             ccccccchhhhcccccccchhhcccCccCCC------chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCC
Q psy14969        490 SNQHCDFTLRNTISFSSHFIFSRKMKNTAVQ------PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRN  563 (687)
Q Consensus       490 m~~~CPlc~~~L~s~sk~LLLSr~Mswrcsg------AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyq  563 (687)
                      |.+.||+|+.+|...+        .+|+|.+      ++++|+|+|+++..++..+.++++|++|     |+.|+..++ 
T Consensus         1 ~~~~CP~C~~~l~~~~--------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~a-----r~~fl~~g~-   66 (272)
T PRK11088          1 MSYQCPLCHQPLTLEE--------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQA-----RRAFLDAGH-   66 (272)
T ss_pred             CcccCCCCCcchhcCC--------CEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHH-----HHHHHHCCC-
Confidence            4589999999997655        6799998      7899999999988888888899999999     888886542 


Q ss_pred             CCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHH
Q psy14969        564 PYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPH--GKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       564 AYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~--GrVtGIDISpeAVE~ARKN  641 (687)
                       |...           ...+...+.+.+   ..++.+|||||||+|+++..+++.++..  ..|+|+|+++.|++.|+++
T Consensus        67 -y~~l-----------~~~i~~~l~~~l---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~  131 (272)
T PRK11088         67 -YQPL-----------RDAVANLLAERL---DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR  131 (272)
T ss_pred             -hHHH-----------HHHHHHHHHHhc---CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence             2210           111223333332   3355789999999999999999876422  3799999999999999876


Q ss_pred             HHHcCCCccCCCcEEEEEcCCCC-----CCccEEEEEecCCCcCcc
Q psy14969        642 IRKNHAHLLDEGVVNIMRTLPPQ-----QDASRVNISVEPQKSGEI  682 (687)
Q Consensus       642 LKkaG~~VaSsgRI~LI~GDAed-----aPFDLILVVfAP~K~gEl  682 (687)
                      ..          ++.+..+++..     ..||+|+..++|....|+
T Consensus       132 ~~----------~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~~e~  167 (272)
T PRK11088        132 YP----------QVTFCVASSHRLPFADQSLDAIIRIYAPCKAEEL  167 (272)
T ss_pred             CC----------CCeEEEeecccCCCcCCceeEEEEecCCCCHHHH
Confidence            42          24455555433     359999998888776654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.22  E-value=9.9e-11  Score=98.65  Aligned_cols=73  Identities=22%  Similarity=0.361  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC---C--CCCccEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP---P--QQDASRVN  671 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA---e--daPFDLIL  671 (687)
                      |+.+|||||||+|.++..+++.. +.++|+|+|+++.+++.|++++...+.    ..++.++.++.   .  ..+||+|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDAEFDPDFLEPFDLVI   75 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCCHGGTTTSSCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECccccCcccCCCCCEEE
Confidence            57899999999999999999965 478999999999999999999977666    68999999998   2  24689887


Q ss_pred             EEe
Q psy14969        672 ISV  674 (687)
Q Consensus       672 VVf  674 (687)
                      ...
T Consensus        76 ~~~   78 (112)
T PF12847_consen   76 CSG   78 (112)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            765

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.08  E-value=9.6e-10  Score=107.96  Aligned_cols=93  Identities=17%  Similarity=0.317  Sum_probs=83.0

Q ss_pred             CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969        575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV  654 (687)
Q Consensus       575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR  654 (687)
                      |.-++.+++.+..+..|  .+.+|++++|||||||.++..++ +++|.++|||||.++++++..++|.++.++     .+
T Consensus        14 ~~p~TK~EIRal~ls~L--~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-----~n   85 (187)
T COG2242          14 GGPMTKEEIRALTLSKL--RPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV-----DN   85 (187)
T ss_pred             CCCCcHHHHHHHHHHhh--CCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCC-----Cc
Confidence            44478889999999988  79999999999999999999999 556899999999999999999999999997     78


Q ss_pred             EEEEEcCCCC----C-CccEEEEEec
Q psy14969        655 VNIMRTLPPQ----Q-DASRVNISVE  675 (687)
Q Consensus       655 I~LI~GDAed----a-PFDLILVVfA  675 (687)
                      +.++.|++++    . .+|.|++...
T Consensus        86 ~~vv~g~Ap~~L~~~~~~daiFIGGg  111 (187)
T COG2242          86 LEVVEGDAPEALPDLPSPDAIFIGGG  111 (187)
T ss_pred             EEEEeccchHhhcCCCCCCEEEECCC
Confidence            9999999875    3 4999988654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.07  E-value=4.7e-10  Score=111.25  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=61.8

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ  665 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda  665 (687)
                      .+++.+  .+.+|.+|||||||||.++..+++.+++.++|+|+|+++.|++.|+++++..+.     .+++++++|++.+
T Consensus        38 ~~~~~~--~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-----~~i~~v~~da~~l  110 (233)
T PF01209_consen   38 KLIKLL--GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-----QNIEFVQGDAEDL  110 (233)
T ss_dssp             HHHHHH--T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB-
T ss_pred             HHHhcc--CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----CCeeEEEcCHHHh
Confidence            444444  567899999999999999999999988889999999999999999999999886     4899999998765


Q ss_pred             C-----ccEEEEEecCCC
Q psy14969        666 D-----ASRVNISVEPQK  678 (687)
Q Consensus       666 P-----FDLILVVfAP~K  678 (687)
                      |     ||.|++.+.--.
T Consensus       111 p~~d~sfD~v~~~fglrn  128 (233)
T PF01209_consen  111 PFPDNSFDAVTCSFGLRN  128 (233)
T ss_dssp             -S-TT-EEEEEEES-GGG
T ss_pred             cCCCCceeEEEHHhhHHh
Confidence            4     788988876443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.07  E-value=4.3e-10  Score=113.78  Aligned_cols=129  Identities=15%  Similarity=0.163  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHHhCCCcc--CCCCCC----CCCCCCCccccCCcccCcHHHHHHHHHHhhhc--CCCCCeEEEEcCCccHH
Q psy14969        540 YKTKELRDLMIKVDRKD--FCPPNR----NPYHDYSVMLENCSYLNSPSFIASSLEPALLK--LKPGDTVLDVGTGSGYT  611 (687)
Q Consensus       540 IdS~EV~qAMraVPRea--FVP~gy----qAYsD~pLPIG~GqTISaP~VvAlLLElLked--LkpG~RVLDIGCGTGYL  611 (687)
                      +++.+..+....+.|+.  ..|-.|    ..+....+.++.+..+++|.+...+...+...  ..++.+|||+|||+|.+
T Consensus        56 ~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i  135 (284)
T TIGR03533        56 LTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCI  135 (284)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHH
Confidence            44555545544555663  456653    56667788889999999887766665554211  23467999999999999


Q ss_pred             HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEEEE
Q psy14969        612 AACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVNIS  673 (687)
Q Consensus       612 TAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLILVV  673 (687)
                      +..+++.. +.++|+|+|+++.+++.|++|++.+++    ..++.++.+|..    ...||+|+.+
T Consensus       136 ~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~~~~D~~~~~~~~~fD~Iv~N  196 (284)
T TIGR03533       136 AIACAYAF-PEAEVDAVDISPDALAVAEINIERHGL----EDRVTLIQSDLFAALPGRKYDLIVSN  196 (284)
T ss_pred             HHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhccCCCCccEEEEC
Confidence            99999886 577999999999999999999999887    567899998863    2258877554

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.06  E-value=1e-09  Score=99.07  Aligned_cols=73  Identities=16%  Similarity=0.273  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC------CccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ------DASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda------PFDL  669 (687)
                      +.+.+|||+|||+|+++..|++...+.++|+|+|+++.|++.|+++++..++     .++.++.+|...+      .||+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-----~ni~~~~~d~~~l~~~~~~~~D~   76 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-----DNIEFIQGDIEDLPQELEEKFDI   76 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-----TTEEEEESBTTCGCGCSSTTEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-----cccceEEeehhccccccCCCeeE
Confidence            4678999999999999999996655688999999999999999999999987     3899999997754      4787


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus        77 I~~~   80 (152)
T PF13847_consen   77 IISN   80 (152)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7665

...

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.05  E-value=9.1e-10  Score=110.94  Aligned_cols=81  Identities=30%  Similarity=0.404  Sum_probs=71.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----cc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----AS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FD  668 (687)
                      .+.+|.+|||||||||-.|..+++.++ .|+|+|+|+++.|++.|+++....++    .+ +.|++|||+.+|     ||
T Consensus        48 ~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~----~~-i~fv~~dAe~LPf~D~sFD  121 (238)
T COG2226          48 GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV----QN-VEFVVGDAENLPFPDNSFD  121 (238)
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc----cc-eEEEEechhhCCCCCCccC
Confidence            455899999999999999999999997 88999999999999999999999887    34 999999998777     78


Q ss_pred             EEEEEecCCCcC
Q psy14969        669 RVNISVEPQKSG  680 (687)
Q Consensus       669 LILVVfAP~K~g  680 (687)
                      ++++.+.--...
T Consensus       122 ~vt~~fglrnv~  133 (238)
T COG2226         122 AVTISFGLRNVT  133 (238)
T ss_pred             EEEeeehhhcCC
Confidence            888887654443

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.04  E-value=3.2e-09  Score=89.96  Aligned_cols=88  Identities=25%  Similarity=0.416  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      ...+.+.+++.+  .+.++.+|||+|||+|+.+..+++..+ .++|+++|+++.+++.|+++++..+.     .++.++.
T Consensus         4 ~~~~~~~~~~~~--~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~   75 (124)
T TIGR02469         4 KREVRALTLSKL--RLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV-----SNIVIVE   75 (124)
T ss_pred             hHHHHHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEe
Confidence            445677777776  567788999999999999999998874 57999999999999999999998875     3677877


Q ss_pred             cCCCC------CCccEEEEEec
Q psy14969        660 TLPPQ------QDASRVNISVE  675 (687)
Q Consensus       660 GDAed------aPFDLILVVfA  675 (687)
                      +++..      ..||.|+....
T Consensus        76 ~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        76 GDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             ccccccChhhcCCCCEEEECCc
Confidence            77542      35898877543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.03  E-value=2.7e-09  Score=106.63  Aligned_cols=95  Identities=18%  Similarity=0.250  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE-
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR-  659 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~-  659 (687)
                      |....++..++  ...++++||||||+.||.|++||..++.+|+++++|+++++++.|++++++.|+    .+++.++. 
T Consensus        45 ~e~g~~L~~L~--~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~----~~~i~~~~~  118 (219)
T COG4122          45 PETGALLRLLA--RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV----DDRIELLLG  118 (219)
T ss_pred             hhHHHHHHHHH--HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC----cceEEEEec
Confidence            55666665555  567889999999999999999999996689999999999999999999999998    77899998 


Q ss_pred             cCC-------CCCCccEEEEEecCCCcCc
Q psy14969        660 TLP-------PQQDASRVNISVEPQKSGE  681 (687)
Q Consensus       660 GDA-------edaPFDLILVVfAP~K~gE  681 (687)
                      |++       ...+||+|++.+++.+..+
T Consensus       119 gdal~~l~~~~~~~fDliFIDadK~~yp~  147 (219)
T COG4122         119 GDALDVLSRLLDGSFDLVFIDADKADYPE  147 (219)
T ss_pred             CcHHHHHHhccCCCccEEEEeCChhhCHH
Confidence            464       2478999999999877654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.02  E-value=2.7e-09  Score=101.30  Aligned_cols=92  Identities=25%  Similarity=0.419  Sum_probs=76.0

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      .++.+.+.+..+..+  .+.++.+|||+|||+|+++..+++..++.++|+++|+++.+++.|+++++..++    .+++.
T Consensus        22 ~~t~~~~r~~~l~~l--~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~   95 (198)
T PRK00377         22 PMTKEEIRALALSKL--RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIV   95 (198)
T ss_pred             CCCHHHHHHHHHHHc--CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeE
Confidence            356667777777666  788999999999999999999998876678999999999999999999999885    46788


Q ss_pred             EEEcCCCC------CCccEEEEEe
Q psy14969        657 IMRTLPPQ------QDASRVNISV  674 (687)
Q Consensus       657 LI~GDAed------aPFDLILVVf  674 (687)
                      ++.+++.+      ..||.|++..
T Consensus        96 ~~~~d~~~~l~~~~~~~D~V~~~~  119 (198)
T PRK00377         96 LIKGEAPEILFTINEKFDRIFIGG  119 (198)
T ss_pred             EEEechhhhHhhcCCCCCEEEECC
Confidence            88888743      3589887743

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.02  E-value=1.6e-09  Score=106.97  Aligned_cols=79  Identities=14%  Similarity=0.238  Sum_probs=69.8

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---------
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---------  664 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---------  664 (687)
                      ...++.+|||||||+||.+..|+..+++.++|+++|+++++++.|+++++++++    .+++.++.|++.+         
T Consensus        65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~~L~~l~~~~  140 (234)
T PLN02781         65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALSALDQLLNND  140 (234)
T ss_pred             HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHHhCC
Confidence            455788999999999999999999887789999999999999999999999998    6789999998742         


Q ss_pred             --CCccEEEEEecC
Q psy14969        665 --QDASRVNISVEP  676 (687)
Q Consensus       665 --aPFDLILVVfAP  676 (687)
                        .+||+|++.++.
T Consensus       141 ~~~~fD~VfiDa~k  154 (234)
T PLN02781        141 PKPEFDFAFVDADK  154 (234)
T ss_pred             CCCCCCEEEECCCH
Confidence              479999987653

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.01  E-value=3.6e-09  Score=98.97  Aligned_cols=90  Identities=20%  Similarity=0.278  Sum_probs=73.8

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      .++.+.+.+.+++.+  .+.++.+|||||||+|+++..+++.. ++++|+++|+++.+++.|+++++..+.     .++.
T Consensus        13 ~~~~~~~r~~~~~~l--~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~   84 (187)
T PRK08287         13 PMTKEEVRALALSKL--ELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-----GNID   84 (187)
T ss_pred             CCchHHHHHHHHHhc--CCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeE
Confidence            356667777777777  67788999999999999999999886 578999999999999999999998875     3588


Q ss_pred             EEEcCCC---CCCccEEEEEe
Q psy14969        657 IMRTLPP---QQDASRVNISV  674 (687)
Q Consensus       657 LI~GDAe---daPFDLILVVf  674 (687)
                      ++.++..   ...||+|++..
T Consensus        85 ~~~~d~~~~~~~~~D~v~~~~  105 (187)
T PRK08287         85 IIPGEAPIELPGKADAIFIGG  105 (187)
T ss_pred             EEecCchhhcCcCCCEEEECC
Confidence            8887754   23589887654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.98  E-value=1.4e-09  Score=111.65  Aligned_cols=129  Identities=16%  Similarity=0.174  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHhCCCcc--CCCCCC----CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCC--CCCeEEEEcCCccHH
Q psy14969        540 YKTKELRDLMIKVDRKD--FCPPNR----NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLK--PGDTVLDVGTGSGYT  611 (687)
Q Consensus       540 IdS~EV~qAMraVPRea--FVP~gy----qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLk--pG~RVLDIGCGTGYL  611 (687)
                      +.+.+..+....+.|+.  ..|-+|    ..+....+.++.+..+++|.+...+...+...+.  ++.+|||+|||+|++
T Consensus        68 l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~i  147 (307)
T PRK11805         68 LTPSEKARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCI  147 (307)
T ss_pred             CCHHHHHHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHH
Confidence            44444444444555663  566653    4666778888899999888776666554421122  236899999999999


Q ss_pred             HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEEE
Q psy14969        612 AACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNIS  673 (687)
Q Consensus       612 TAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILVV  673 (687)
                      +..+++.. |..+|+|+|+++.+++.|++|++..++    ..++.++.+|...    ..||+|+..
T Consensus       148 ai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~~l~~~~fDlIvsN  208 (307)
T PRK11805        148 AIACAYAF-PDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFAALPGRRYDLIVSN  208 (307)
T ss_pred             HHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhhhCCCCCccEEEEC
Confidence            99999886 578999999999999999999999886    5678999988532    358877553

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.97  E-value=4e-09  Score=106.60  Aligned_cols=97  Identities=25%  Similarity=0.359  Sum_probs=75.7

Q ss_pred             ccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccC
Q psy14969        572 LENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD  651 (687)
Q Consensus       572 IG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaS  651 (687)
                      +.++..|..|.-.+.++..+  ++.||.+|||.|+|||.+|+.|++.++|.|+|++.|+.++.++.|+++++.+++    
T Consensus        17 l~rrtQIiYpkD~~~I~~~l--~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl----   90 (247)
T PF08704_consen   17 LPRRTQIIYPKDISYILMRL--DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL----   90 (247)
T ss_dssp             S-SSS----HHHHHHHHHHT--T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----
T ss_pred             ccCCcceeeCchHHHHHHHc--CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----
Confidence            34455678888999999888  899999999999999999999999999999999999999999999999999998    


Q ss_pred             CCcEEEEEcCCCC--------CCccEEEEEe
Q psy14969        652 EGVVNIMRTLPPQ--------QDASRVNISV  674 (687)
Q Consensus       652 sgRI~LI~GDAed--------aPFDLILVVf  674 (687)
                      .+.+.+.++|...        ..+|.|++..
T Consensus        91 ~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDl  121 (247)
T PF08704_consen   91 DDNVTVHHRDVCEEGFDEELESDFDAVFLDL  121 (247)
T ss_dssp             CTTEEEEES-GGCG--STT-TTSEEEEEEES
T ss_pred             CCCceeEecceecccccccccCcccEEEEeC
Confidence            6789999988632        2478887763

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.97  E-value=1.3e-09  Score=106.75  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=69.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----------
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----------  663 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----------  663 (687)
                      ...+.+|||||||+||.|.+||+.++++|+|+++|++++.++.|+++++++|+    .++++++.|++.           
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~~~l~~l~~~~~  118 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDALEVLPELANDGE  118 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HHHHHHHHHHTTT
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccHhhHHHHHhccC
Confidence            44778999999999999999999987789999999999999999999999998    789999999974           


Q ss_pred             CCCccEEEEEecCCC
Q psy14969        664 QQDASRVNISVEPQK  678 (687)
Q Consensus       664 daPFDLILVVfAP~K  678 (687)
                      ..+||.|++.++...
T Consensus       119 ~~~fD~VFiDa~K~~  133 (205)
T PF01596_consen  119 EGQFDFVFIDADKRN  133 (205)
T ss_dssp             TTSEEEEEEESTGGG
T ss_pred             CCceeEEEEcccccc
Confidence            247999999987543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.96  E-value=6.4e-09  Score=99.18  Aligned_cols=83  Identities=19%  Similarity=0.332  Sum_probs=67.9

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..++..+  .+.++.+|||||||+|..+..+++..++.++|+|+|+++.+++.|+++++..+.     .++.++.+++..
T Consensus        35 ~~~l~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~  107 (231)
T TIGR02752        35 KDTMKRM--NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNVELVHGNAME  107 (231)
T ss_pred             HHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEechhc
Confidence            4455555  577889999999999999999999887778999999999999999999987765     468888887643


Q ss_pred             -----CCccEEEEEe
Q psy14969        665 -----QDASRVNISV  674 (687)
Q Consensus       665 -----aPFDLILVVf  674 (687)
                           ..||.|++.+
T Consensus       108 ~~~~~~~fD~V~~~~  122 (231)
T TIGR02752       108 LPFDDNSFDYVTIGF  122 (231)
T ss_pred             CCCCCCCccEEEEec
Confidence                 4588887654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.95  E-value=6.5e-09  Score=98.18  Aligned_cols=81  Identities=21%  Similarity=0.375  Sum_probs=68.5

Q ss_pred             CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969        575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV  654 (687)
Q Consensus       575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR  654 (687)
                      |..++.+.+.+.++..+  .+.++.+|||+|||+|+++..+++.. +.++|+++|+++.+++.|+++++..++     .+
T Consensus        20 ~~p~t~~~v~~~l~~~l--~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~-----~~   91 (196)
T PRK07402         20 GIPLTKREVRLLLISQL--RLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV-----KN   91 (196)
T ss_pred             CCCCCHHHHHHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-----CC
Confidence            44466777887788777  67788999999999999999998775 568999999999999999999998875     46


Q ss_pred             EEEEEcCCC
Q psy14969        655 VNIMRTLPP  663 (687)
Q Consensus       655 I~LI~GDAe  663 (687)
                      +.++.+++.
T Consensus        92 v~~~~~d~~  100 (196)
T PRK07402         92 VEVIEGSAP  100 (196)
T ss_pred             eEEEECchH
Confidence            888888864

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.94  E-value=5.4e-09  Score=102.76  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=67.6

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      ++..+...+...+.++.+|||||||+|..+..+++.+ .|.++|+|+|+++.|++.|++++...+.    ..++.++.++
T Consensus        42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d  117 (247)
T PRK15451         42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGD  117 (247)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCC
Confidence            4444433332235688999999999999999988754 3678999999999999999999998776    4579999999


Q ss_pred             CCCCC---ccEEEEE
Q psy14969        662 PPQQD---ASRVNIS  673 (687)
Q Consensus       662 AedaP---FDLILVV  673 (687)
                      ....+   +|.|+..
T Consensus       118 ~~~~~~~~~D~vv~~  132 (247)
T PRK15451        118 IRDIAIENASMVVLN  132 (247)
T ss_pred             hhhCCCCCCCEEehh
Confidence            76543   7776654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.94  E-value=3.1e-09  Score=114.77  Aligned_cols=125  Identities=14%  Similarity=0.055  Sum_probs=91.5

Q ss_pred             CCCHHHHHHHHhCCCc-cCCCCC----CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHH
Q psy14969        540 YKTKELRDLMIKVDRK-DFCPPN----RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAAC  614 (687)
Q Consensus       540 IdS~EV~qAMraVPRe-aFVP~g----yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAa  614 (687)
                      +.+.+.......+.|+ ...|-+    .+.|.+..+.++.+..+++|.+...+...+ ..+.++.+|||||||||.++..
T Consensus       190 l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL-~~l~~~~rVLDLGcGSG~Iaia  268 (423)
T PRK14966        190 MPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVL-ARLPENGRVWDLGTGSGAVAVT  268 (423)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhh-hccCCCCEEEEEeChhhHHHHH
Confidence            3444433333334333 344555    357788888999999999997766655444 2355677999999999999999


Q ss_pred             HHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccEEEE
Q psy14969        615 LGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASRVNI  672 (687)
Q Consensus       615 LArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDLILV  672 (687)
                      +++.. +.++|+|+|+|+.|++.|++|++..+.      ++.++.+|..      ..+||+|+.
T Consensus       269 LA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~fi~gDl~e~~l~~~~~FDLIVS  325 (423)
T PRK14966        269 VALER-PDAFVRASDISPPALETARKNAADLGA------RVEFAHGSWFDTDMPSEGKWDIIVS  325 (423)
T ss_pred             HHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------cEEEEEcchhccccccCCCccEEEE
Confidence            99875 467999999999999999999998764      7888888853      235787654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.93  E-value=5.1e-09  Score=108.13  Aligned_cols=86  Identities=27%  Similarity=0.240  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE-Ec
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM-RT  660 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI-~G  660 (687)
                      .+..++++++.....+|++|||||||||.++++.+++..  .+|+|+|++|.+++.|++|++.+++    ..++.+. ..
T Consensus       146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~----~~~~~v~~~~  219 (295)
T PF06325_consen  146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGV----EDRIEVSLSE  219 (295)
T ss_dssp             HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-----TTCEEESCTS
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCC----CeeEEEEEec
Confidence            456667777766678899999999999999999888753  5899999999999999999999998    5566553 23


Q ss_pred             CCCCCCccEEEEE
Q psy14969        661 LPPQQDASRVNIS  673 (687)
Q Consensus       661 DAedaPFDLILVV  673 (687)
                      +....+||+|+.+
T Consensus       220 ~~~~~~~dlvvAN  232 (295)
T PF06325_consen  220 DLVEGKFDLVVAN  232 (295)
T ss_dssp             CTCCS-EEEEEEE
T ss_pred             ccccccCCEEEEC
Confidence            4445789988765

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02476 O-methyltransferase

Probab=98.93  E-value=2.3e-09  Score=110.08  Aligned_cols=93  Identities=12%  Similarity=0.159  Sum_probs=77.5

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..|....++..++  ...++++|||||||+||.|+.+|..++++|+|+++|.+++.++.|+++++++|+    .+++.+
T Consensus       101 ~v~~~~g~lL~~L~--~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~l  174 (278)
T PLN02476        101 QVSPDQAQLLAMLV--QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNV  174 (278)
T ss_pred             ccCHHHHHHHHHHH--HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEE
Confidence            34555555444444  566789999999999999999999887789999999999999999999999998    679999


Q ss_pred             EEcCCCC-----------CCccEEEEEecC
Q psy14969        658 MRTLPPQ-----------QDASRVNISVEP  676 (687)
Q Consensus       658 I~GDAed-----------aPFDLILVVfAP  676 (687)
                      +.|++.+           .+||.|++.++.
T Consensus       175 i~GdA~e~L~~l~~~~~~~~FD~VFIDa~K  204 (278)
T PLN02476        175 KHGLAAESLKSMIQNGEGSSYDFAFVDADK  204 (278)
T ss_pred             EEcCHHHHHHHHHhcccCCCCCEEEECCCH
Confidence            9999732           479999998764

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.92  E-value=2.7e-09  Score=116.26  Aligned_cols=128  Identities=15%  Similarity=0.111  Sum_probs=92.4

Q ss_pred             CCCHHHHHHHHhCCCc-cCCCCC----CCCCCCCCccccCCcccCcHHHHHHHHHHhhh-c-------------------
Q psy14969        540 YKTKELRDLMIKVDRK-DFCPPN----RNPYHDYSVMLENCSYLNSPSFIASSLEPALL-K-------------------  594 (687)
Q Consensus       540 IdS~EV~qAMraVPRe-aFVP~g----yqAYsD~pLPIG~GqTISaP~VvAlLLElLke-d-------------------  594 (687)
                      +++.+.......+.|+ .-.|-+    +..|.+..+.++.+..|++|++...+-..+.. .                   
T Consensus        51 l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~  130 (506)
T PRK01544         51 LNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGND  130 (506)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhcccccccccccccccccc
Confidence            4444433333333343 334544    46788899999999999999876555433311 0                   


Q ss_pred             -----CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CC
Q psy14969        595 -----LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQ  665 (687)
Q Consensus       595 -----LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----da  665 (687)
                           ..++.+|||||||||+++..++... |.++|+|+|+++.+++.|++|+..+++    .+++.++.+|..    ..
T Consensus       131 ~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~~~~~~  205 (506)
T PRK01544        131 ISSNCNDKFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFENIEKQ  205 (506)
T ss_pred             ccccccCCCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhhhCcCC
Confidence                 1134689999999999999999876 578999999999999999999998886    567888888853    23


Q ss_pred             CccEEEE
Q psy14969        666 DASRVNI  672 (687)
Q Consensus       666 PFDLILV  672 (687)
                      .||+|+.
T Consensus       206 ~fDlIvs  212 (506)
T PRK01544        206 KFDFIVS  212 (506)
T ss_pred             CccEEEE
Confidence            5887765

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.89  E-value=1.2e-08  Score=98.56  Aligned_cols=74  Identities=24%  Similarity=0.328  Sum_probs=63.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDL  669 (687)
                      .++++.+|||||||+|+.+..+++.. +.++|+|+|+++.|++.|+++++..++    . ++.++.+++..    .+||+
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l----~-~i~~~~~d~~~~~~~~~fDl  115 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL----K-NVTVVHGRAEEFGQEEKFDV  115 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC----C-CEEEEeccHhhCCCCCCccE
Confidence            35568999999999999999999876 578999999999999999999999987    3 48888888654    36998


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       116 V~~~  119 (187)
T PRK00107        116 VTSR  119 (187)
T ss_pred             EEEc
Confidence            8874

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.89  E-value=1.2e-08  Score=101.69  Aligned_cols=80  Identities=21%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----cc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----AS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FD  668 (687)
                      .+.++.+|||||||||+++..+++..++.++|+|+|++++|++.|+++......  ....++.++.+++..+|     ||
T Consensus        70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD  147 (261)
T PLN02233         70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFD  147 (261)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEe
Confidence            567889999999999999999998876678999999999999999987642110  00247889999877544     78


Q ss_pred             EEEEEec
Q psy14969        669 RVNISVE  675 (687)
Q Consensus       669 LILVVfA  675 (687)
                      .|++.+.
T Consensus       148 ~V~~~~~  154 (261)
T PLN02233        148 AITMGYG  154 (261)
T ss_pred             EEEEecc
Confidence            8877654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.2e-08  Score=103.84  Aligned_cols=83  Identities=22%  Similarity=0.258  Sum_probs=67.6

Q ss_pred             CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCC-eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        563 NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGD-TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       563 qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~-RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      ..|....+.+..+..+++|.+..++-..+. ...... +|||||||||.+++.++... |.++|+|+|+|+.+++.|++|
T Consensus        76 ~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~N  153 (280)
T COG2890          76 AEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALAREN  153 (280)
T ss_pred             CeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHH
Confidence            356677788889999999987766655331 122222 79999999999999999997 578999999999999999999


Q ss_pred             HHHcCC
Q psy14969        642 IRKNHA  647 (687)
Q Consensus       642 LKkaG~  647 (687)
                      ++.+++
T Consensus       154 a~~~~l  159 (280)
T COG2890         154 AERNGL  159 (280)
T ss_pred             HHHcCC
Confidence            999985

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.86  E-value=9.3e-09  Score=98.06  Aligned_cols=71  Identities=21%  Similarity=0.293  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNI  672 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILV  672 (687)
                      ++.+|||||||+|+++..++... +.++|+|+|+++.|++.|++++++.++     .++.++.+++..    .+||+|+.
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~~~~~~fD~I~s  115 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDFQHEEQFDVITS  115 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhccccCCccEEEe
Confidence            48899999999999999998765 578999999999999999999999876     358999998764    46898766


Q ss_pred             E
Q psy14969        673 S  673 (687)
Q Consensus       673 V  673 (687)
                      .
T Consensus       116 ~  116 (181)
T TIGR00138       116 R  116 (181)
T ss_pred             h
Confidence            4

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=1.1e-08  Score=104.49  Aligned_cols=93  Identities=24%  Similarity=0.292  Sum_probs=80.2

Q ss_pred             CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969        575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV  654 (687)
Q Consensus       575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR  654 (687)
                      +..+..|.-.++++..+  .+.+|++|||.|+|||.+|+.||..++|.|+|+++|+.++.++.|++|++.+++    .++
T Consensus        74 ~tQiIyPKD~~~I~~~~--gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d~  147 (256)
T COG2519          74 RTQIIYPKDAGYIVARL--GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GDR  147 (256)
T ss_pred             CCceecCCCHHHHHHHc--CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----ccc
Confidence            34455666778888777  899999999999999999999999999999999999999999999999999988    556


Q ss_pred             EEEEEcCCC----CCCccEEEEE
Q psy14969        655 VNIMRTLPP----QQDASRVNIS  673 (687)
Q Consensus       655 I~LI~GDAe----daPFDLILVV  673 (687)
                      +.+..+|..    ..+||+|++.
T Consensus       148 v~~~~~Dv~~~~~~~~vDav~LD  170 (256)
T COG2519         148 VTLKLGDVREGIDEEDVDAVFLD  170 (256)
T ss_pred             eEEEeccccccccccccCEEEEc
Confidence            888888854    2478988876

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.85  E-value=2.2e-08  Score=100.69  Aligned_cols=106  Identities=21%  Similarity=0.266  Sum_probs=80.7

Q ss_pred             CCCCCCCccccCCcccCcHHHHHHHHHHhhh--cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        563 NPYHDYSVMLENCSYLNSPSFIASSLEPALL--KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       563 qAYsD~pLPIG~GqTISaP~VvAlLLElLke--dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      ..|.+..+.++.+..+++|.+..++...+..  ...++.+|||+|||+|.++..++... +..+|+|+|+++.+++.|++
T Consensus        78 ~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~  156 (284)
T TIGR00536        78 KEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEE  156 (284)
T ss_pred             ceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence            4566777888888888888665554443321  11223699999999999999999887 46799999999999999999


Q ss_pred             HHHHcCCCccCCCcEEEEEcCCCC----CCccEEEEE
Q psy14969        641 NIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNIS  673 (687)
Q Consensus       641 NLKkaG~~VaSsgRI~LI~GDAed----aPFDLILVV  673 (687)
                      |++.+++    .+++.++.+|...    .+||+|+..
T Consensus       157 n~~~~~~----~~~v~~~~~d~~~~~~~~~fDlIvsN  189 (284)
T TIGR00536       157 NAEKNQL----EHRVEFIQSNLFEPLAGQKIDIIVSN  189 (284)
T ss_pred             HHHHcCC----CCcEEEEECchhccCcCCCccEEEEC
Confidence            9999886    4568999888532    268877553

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.83  E-value=1.7e-08  Score=101.83  Aligned_cols=91  Identities=11%  Similarity=0.089  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      |...+++..++  ...+.++||||||++||.|.+||..++++|+|+++|++++.++.|+++++++|+    .++|.++.|
T Consensus        65 ~~~g~lL~~l~--~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G  138 (247)
T PLN02589         65 ADEGQFLNMLL--KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREG  138 (247)
T ss_pred             HHHHHHHHHHH--HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEec
Confidence            44444444333  455778999999999999999999987789999999999999999999999998    789999999


Q ss_pred             CCCC------------CCccEEEEEecCC
Q psy14969        661 LPPQ------------QDASRVNISVEPQ  677 (687)
Q Consensus       661 DAed------------aPFDLILVVfAP~  677 (687)
                      ++.+            .+||.|++.++.-
T Consensus       139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~  167 (247)
T PLN02589        139 PALPVLDQMIEDGKYHGTFDFIFVDADKD  167 (247)
T ss_pred             cHHHHHHHHHhccccCCcccEEEecCCHH
Confidence            8632            4899999988743

>TIGR00740 methyltransferase, putative

Probab=98.82  E-value=4e-08  Score=95.28  Aligned_cols=76  Identities=22%  Similarity=0.327  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC---ccEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD---ASRV  670 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP---FDLI  670 (687)
                      +.++.+|||||||+|..+..+++.+ .|.++|+|+|+++.|++.|+++++..+.    ..++.++.++....+   +|+|
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~d~v  126 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVEIKNASMV  126 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCCCCCCCEE
Confidence            4578899999999999999999875 3578999999999999999999987654    457899999876544   6766


Q ss_pred             EEEe
Q psy14969        671 NISV  674 (687)
Q Consensus       671 LVVf  674 (687)
                      ++.+
T Consensus       127 ~~~~  130 (239)
T TIGR00740       127 ILNF  130 (239)
T ss_pred             eeec
Confidence            5543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.81  E-value=2.9e-08  Score=92.67  Aligned_cols=81  Identities=23%  Similarity=0.266  Sum_probs=64.8

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-  663 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-  663 (687)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.|+++++.+++    .. +.++.+|.. 
T Consensus        21 ~lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~----~~-v~~~~~d~~~   92 (170)
T PF05175_consen   21 RLLLDNLP--KHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL----EN-VEVVQSDLFE   92 (170)
T ss_dssp             HHHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC----TT-EEEEESSTTT
T ss_pred             HHHHHHHh--hccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc----cc-cccccccccc
Confidence            34555552  2267899999999999999999886 577899999999999999999999997    33 888888853 


Q ss_pred             ---CCCccEEEEE
Q psy14969        664 ---QQDASRVNIS  673 (687)
Q Consensus       664 ---daPFDLILVV  673 (687)
                         ...||+|+..
T Consensus        93 ~~~~~~fD~Iv~N  105 (170)
T PF05175_consen   93 ALPDGKFDLIVSN  105 (170)
T ss_dssp             TCCTTCEEEEEE-
T ss_pred             cccccceeEEEEc
Confidence               3568877554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.81  E-value=3.9e-08  Score=94.00  Aligned_cols=84  Identities=19%  Similarity=0.141  Sum_probs=65.3

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+++.+...+.++.+|||||||+|.++..++...   .+|+|+|+++.|++.|++++...+.    ..++.+..++.
T Consensus        41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~  113 (219)
T TIGR02021        41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDL  113 (219)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECCh
Confidence            4445555552114568899999999999999998763   3899999999999999999987765    35788888886


Q ss_pred             CC--CCccEEEEE
Q psy14969        663 PQ--QDASRVNIS  673 (687)
Q Consensus       663 ed--aPFDLILVV  673 (687)
                      ..  ..||+|+..
T Consensus       114 ~~~~~~fD~ii~~  126 (219)
T TIGR02021       114 LSLCGEFDIVVCM  126 (219)
T ss_pred             hhCCCCcCEEEEh
Confidence            54  448988764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.80  E-value=3e-08  Score=97.89  Aligned_cols=81  Identities=30%  Similarity=0.249  Sum_probs=62.3

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+++.+...+.++.+|||||||+|+++..+++...  .+|+|+|+++.+++.|++|++.+++    ..++.+..++. 
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~~-  178 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGDL-  178 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCCC-
Confidence            3344555433456889999999999999998776542  3799999999999999999999886    45566666653 


Q ss_pred             CCCccEEEEE
Q psy14969        664 QQDASRVNIS  673 (687)
Q Consensus       664 daPFDLILVV  673 (687)
                        +||+|+..
T Consensus       179 --~fD~Vvan  186 (250)
T PRK00517        179 --KADVIVAN  186 (250)
T ss_pred             --CcCEEEEc
Confidence              79988754

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.6e-08  Score=105.20  Aligned_cols=87  Identities=31%  Similarity=0.274  Sum_probs=66.6

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC-
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL-  661 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD-  661 (687)
                      +..++++++....++|.+|||+|||||.++++++++..  .+|+|+|++|.+++.|+.|+..+++...  .++.....+ 
T Consensus       148 TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~--~~~~~~~~~~  223 (300)
T COG2264         148 TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELL--VQAKGFLLLE  223 (300)
T ss_pred             hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchh--hhcccccchh
Confidence            56677777766678999999999999999999998864  5899999999999999999999998310  112222212 


Q ss_pred             -CCCCCccEEEEE
Q psy14969        662 -PPQQDASRVNIS  673 (687)
Q Consensus       662 -AedaPFDLILVV  673 (687)
                       ....+||+|+.+
T Consensus       224 ~~~~~~~DvIVAN  236 (300)
T COG2264         224 VPENGPFDVIVAN  236 (300)
T ss_pred             hcccCcccEEEeh
Confidence             234689988764

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.77  E-value=3.6e-08  Score=101.96  Aligned_cols=80  Identities=24%  Similarity=0.201  Sum_probs=68.3

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-  664 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-  664 (687)
                      .+++.+  ++++|++|||||||.|.++..+|+..+  .+|+|+++|+++.+.|+++++..|.    ..++++...|-.+ 
T Consensus        63 ~~~~kl--~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~l~d~rd~  134 (283)
T COG2230          63 LILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVRLQDYRDF  134 (283)
T ss_pred             HHHHhc--CCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEEecccccc
Confidence            334444  899999999999999999999999974  6999999999999999999999998    5688888777543 


Q ss_pred             -CCccEEEEE
Q psy14969        665 -QDASRVNIS  673 (687)
Q Consensus       665 -aPFDLILVV  673 (687)
                       .+||.|+.+
T Consensus       135 ~e~fDrIvSv  144 (283)
T COG2230         135 EEPFDRIVSV  144 (283)
T ss_pred             ccccceeeeh
Confidence             449999776

>PLN02244 tocopherol O-methyltransferase

Probab=98.76  E-value=5.9e-08  Score=100.37  Aligned_cols=74  Identities=15%  Similarity=0.047  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----CccEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DASRV  670 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFDLI  670 (687)
                      .++.+|||||||+|.++..|++..+  ++|+|||+++.+++.|+++.+..++    ..++.++.+|+...     .||+|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~~~~~~~~~~FD~V  190 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADALNQPFEDGQFDLV  190 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCcccCCCCCCCccEE
Confidence            5788999999999999999998763  5999999999999999999988876    56799999987543     48988


Q ss_pred             EEEec
Q psy14969        671 NISVE  675 (687)
Q Consensus       671 LVVfA  675 (687)
                      +....
T Consensus       191 ~s~~~  195 (340)
T PLN02244        191 WSMES  195 (340)
T ss_pred             EECCc
Confidence            76543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.76  E-value=3.6e-08  Score=94.72  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-C-------CCCcc
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-P-------QQDAS  668 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-e-------daPFD  668 (687)
                      ++.+|||||||+|+.+..+++.. |..+|+|+|+++.+++.|++++...++     .++.++.+++ .       ...||
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~l~~~~~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL-----TNLRLLCGDAVEVLLDMFPDGSLD  113 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC-----CCEEEEecCHHHHHHHHcCccccc
Confidence            67899999999999999999886 567999999999999999999988775     4688999987 2       34589


Q ss_pred             EEEEEec
Q psy14969        669 RVNISVE  675 (687)
Q Consensus       669 LILVVfA  675 (687)
                      .|++.+.
T Consensus       114 ~V~~~~~  120 (202)
T PRK00121        114 RIYLNFP  120 (202)
T ss_pred             eEEEECC
Confidence            8987763

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.75  E-value=6.6e-08  Score=94.30  Aligned_cols=105  Identities=18%  Similarity=0.132  Sum_probs=77.5

Q ss_pred             CCCCCCCccccCCcccCcHHHHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        563 NPYHDYSVMLENCSYLNSPSFIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       563 qAYsD~pLPIG~GqTISaP~VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      ..|.+..+.++.+..+++|.+...+-..+. ....++.+|||+|||+|..+..++... +..+|+|+|+++.+++.|+++
T Consensus        73 ~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n  151 (275)
T PRK09328         73 AEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRN  151 (275)
T ss_pred             ceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence            456666777778877877755433332221 134567899999999999999999887 577999999999999999999


Q ss_pred             HHHcCCCccCCCcEEEEEcCCCC----CCccEEEEE
Q psy14969        642 IRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNIS  673 (687)
Q Consensus       642 LKkaG~~VaSsgRI~LI~GDAed----aPFDLILVV  673 (687)
                      +. ...    ..++.++.+|...    ..||+|+..
T Consensus       152 ~~-~~~----~~~i~~~~~d~~~~~~~~~fD~Iv~n  182 (275)
T PRK09328        152 AK-HGL----GARVEFLQGDWFEPLPGGRFDLIVSN  182 (275)
T ss_pred             HH-hCC----CCcEEEEEccccCcCCCCceeEEEEC
Confidence            88 222    3468888887643    468877553

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.74  E-value=4.3e-08  Score=98.37  Aligned_cols=78  Identities=23%  Similarity=0.276  Sum_probs=65.5

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..+.+...+++.+  .+.++.+|||||||+|.+|..+++...   +|+|+|+++.|++.+++++..        .++.+
T Consensus        25 l~~~~i~~~i~~~l--~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~--------~~v~~   91 (272)
T PRK00274         25 LIDENILDKIVDAA--GPQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE--------DNLTI   91 (272)
T ss_pred             CCCHHHHHHHHHhc--CCCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc--------CceEE
Confidence            34566788888877  678899999999999999999998863   899999999999999886532        37899


Q ss_pred             EEcCCCCCCcc
Q psy14969        658 MRTLPPQQDAS  668 (687)
Q Consensus       658 I~GDAedaPFD  668 (687)
                      +.+|+...+++
T Consensus        92 i~~D~~~~~~~  102 (272)
T PRK00274         92 IEGDALKVDLS  102 (272)
T ss_pred             EEChhhcCCHH
Confidence            99998877764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.72  E-value=8e-08  Score=91.83  Aligned_cols=72  Identities=13%  Similarity=0.033  Sum_probs=58.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRV  670 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLI  670 (687)
                      ..++.+|||+|||+|..+..||+..   .+|+|+|+++.|++.|+++.+..++     .++.+..+|...    .+||+|
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~fD~I   99 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNNLTFDGEYDFI   99 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhhCCcCCCcCEE
Confidence            4467899999999999999999864   3899999999999999999988776     236666666442    358988


Q ss_pred             EEEe
Q psy14969        671 NISV  674 (687)
Q Consensus       671 LVVf  674 (687)
                      +...
T Consensus       100 ~~~~  103 (197)
T PRK11207        100 LSTV  103 (197)
T ss_pred             EEec
Confidence            7664

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.72  E-value=4.4e-08  Score=99.60  Aligned_cols=82  Identities=26%  Similarity=0.250  Sum_probs=62.5

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+++.+  .+++|++|||||||.|.++..+|+..+  .+|+||.+|++.++.|++++++.|+    .+++.+..+|..
T Consensus        51 ~~~~~~~~--~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~~  122 (273)
T PF02353_consen   51 LDLLCEKL--GLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDYR  122 (273)
T ss_dssp             HHHHHTTT--T--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-GG
T ss_pred             HHHHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeecc
Confidence            44455555  789999999999999999999999964  6999999999999999999999998    778999988854


Q ss_pred             C--CCccEEEEE
Q psy14969        664 Q--QDASRVNIS  673 (687)
Q Consensus       664 d--aPFDLILVV  673 (687)
                      +  .+||.|+.+
T Consensus       123 ~~~~~fD~IvSi  134 (273)
T PF02353_consen  123 DLPGKFDRIVSI  134 (273)
T ss_dssp             G---S-SEEEEE
T ss_pred             ccCCCCCEEEEE
Confidence            3  479998876

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.72  E-value=8.9e-08  Score=91.55  Aligned_cols=99  Identities=19%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             CCCCCccccCCcccCcHHHHH---HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        565 YHDYSVMLENCSYLNSPSFIA---SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       565 YsD~pLPIG~GqTISaP~VvA---lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      |.+..+.++.+..++.|....   .++..+   ...+.+|||+|||+|+.+..+++.. +...|+|+|+++.+++.|+++
T Consensus        55 ~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~---~~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~  130 (251)
T TIGR03534        55 FYGLDFKVSPGVLIPRPDTEELVEAALERL---KKGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKN  130 (251)
T ss_pred             EeceEEEECCCcccCCCChHHHHHHHHHhc---ccCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence            334444455555555554333   333332   2345699999999999999999886 467999999999999999999


Q ss_pred             HHHcCCCccCCCcEEEEEcCCC----CCCccEEEE
Q psy14969        642 IRKNHAHLLDEGVVNIMRTLPP----QQDASRVNI  672 (687)
Q Consensus       642 LKkaG~~VaSsgRI~LI~GDAe----daPFDLILV  672 (687)
                      ++..++     .++.++.++..    ...||+|+.
T Consensus       131 ~~~~~~-----~~~~~~~~d~~~~~~~~~fD~Vi~  160 (251)
T TIGR03534       131 AARLGL-----DNVTFLQSDWFEPLPGGKFDLIVS  160 (251)
T ss_pred             HHHcCC-----CeEEEEECchhccCcCCceeEEEE
Confidence            998876     36888888863    345887755

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.72  E-value=9e-08  Score=102.05  Aligned_cols=86  Identities=27%  Similarity=0.374  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+++.+  .+.++.+|||+|||+|.++..+|+...   +|+|+|+++.|++.|++|++.+++     .++.++.+|+
T Consensus       285 l~~~vl~~l--~~~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~-----~~v~~~~~d~  354 (443)
T PRK13168        285 MVARALEWL--DPQPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGL-----DNVTFYHANL  354 (443)
T ss_pred             HHHHHHHHh--cCCCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEeCh
Confidence            444555554  456788999999999999999998864   899999999999999999998886     3689999986


Q ss_pred             CC---------CCccEEEEEecCCCcC
Q psy14969        663 PQ---------QDASRVNISVEPQKSG  680 (687)
Q Consensus       663 ed---------aPFDLILVVfAP~K~g  680 (687)
                      ..         ..||+|+  ..|+..|
T Consensus       355 ~~~l~~~~~~~~~fD~Vi--~dPPr~g  379 (443)
T PRK13168        355 EEDFTDQPWALGGFDKVL--LDPPRAG  379 (443)
T ss_pred             HHhhhhhhhhcCCCCEEE--ECcCCcC
Confidence            42         3478764  4777765

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.71  E-value=1.1e-07  Score=96.10  Aligned_cols=85  Identities=19%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-  662 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-  662 (687)
                      ..++++.+.....++.+|||||||+|+++..+++..  ..+|+|+|+++.+++.|++|+..+++    ..++.+..++. 
T Consensus       146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~~----~~~~~~~~~~~~  219 (288)
T TIGR00406       146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQV----SDRLQVKLIYLE  219 (288)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCC----CcceEEEecccc
Confidence            444454443335678999999999999998888753  35899999999999999999998876    44566655532 


Q ss_pred             --CCCCccEEEEEe
Q psy14969        663 --PQQDASRVNISV  674 (687)
Q Consensus       663 --edaPFDLILVVf  674 (687)
                        ...+||+|+...
T Consensus       220 ~~~~~~fDlVvan~  233 (288)
T TIGR00406       220 QPIEGKADVIVANI  233 (288)
T ss_pred             cccCCCceEEEEec
Confidence              235799887653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.71  E-value=8.6e-08  Score=94.23  Aligned_cols=71  Identities=17%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL  669 (687)
                      .++.+|||||||+|+++..+++..   .+|+|+|+++.|++.|+++++..++    ..++.++.++..      ...||+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~~~~~fD~  115 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQHLETPVDL  115 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhhcCCCCCE
Confidence            456799999999999999999874   4899999999999999999998876    567888888753      346898


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       116 V~~~  119 (255)
T PRK11036        116 ILFH  119 (255)
T ss_pred             EEeh
Confidence            8754

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.71  E-value=6.9e-08  Score=95.12  Aligned_cols=76  Identities=28%  Similarity=0.372  Sum_probs=63.7

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----Ccc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFD  668 (687)
                      .+.++.+|||||||+|..+..+++..++.++|+|+|+++.+++.|+++....++     .++.++.++...+     .||
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l~~~~~~fD  148 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEALPVADNSVD  148 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhCCCCCCcee
Confidence            467899999999999999988888877778999999999999999999988876     4678888876543     478


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|+...
T Consensus       149 ~Vi~~~  154 (272)
T PRK11873        149 VIISNC  154 (272)
T ss_pred             EEEEcC
Confidence            776543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.70  E-value=1.5e-07  Score=89.20  Aligned_cols=84  Identities=18%  Similarity=0.048  Sum_probs=64.3

Q ss_pred             HHHHHHHHhhh-cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPALL-KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLke-dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      +...+++.+.. ...++.+|||||||+|+++..+++...   .|+|+|+++.|++.|++++...+.    ..++.+..++
T Consensus        48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d  120 (230)
T PRK07580         48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGL----AGNITFEVGD  120 (230)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcC
Confidence            34444554421 145678999999999999999987643   799999999999999999988765    3578888877


Q ss_pred             CC--CCCccEEEEE
Q psy14969        662 PP--QQDASRVNIS  673 (687)
Q Consensus       662 Ae--daPFDLILVV  673 (687)
                      .+  ..+||+|+..
T Consensus       121 ~~~~~~~fD~v~~~  134 (230)
T PRK07580        121 LESLLGRFDTVVCL  134 (230)
T ss_pred             chhccCCcCEEEEc
Confidence            44  3559988764

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.69  E-value=1.1e-07  Score=90.81  Aligned_cols=79  Identities=15%  Similarity=0.062  Sum_probs=58.6

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      +..+++.+  ...++.+|||||||+|+++..+|+..   ++|+|+|+++.|++.|+++.+..++      .+.+..++..
T Consensus        19 ~~~l~~~~--~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~   87 (195)
T TIGR00477        19 HSAVREAV--KTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL------PLRTDAYDIN   87 (195)
T ss_pred             hHHHHHHh--ccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccch
Confidence            33444444  34467799999999999999999864   4899999999999999999888776      2444444422


Q ss_pred             ----CCCccEEEEE
Q psy14969        664 ----QQDASRVNIS  673 (687)
Q Consensus       664 ----daPFDLILVV  673 (687)
                          ...||.|+..
T Consensus        88 ~~~~~~~fD~I~~~  101 (195)
T TIGR00477        88 AAALNEDYDFIFST  101 (195)
T ss_pred             hccccCCCCEEEEe
Confidence                2358988765

Part of a tellurite-reducing operon tehA and tehB

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.68  E-value=1.2e-07  Score=94.73  Aligned_cols=76  Identities=12%  Similarity=0.143  Sum_probs=65.8

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFD  668 (687)
                      .+++|.+|||+|||+|..|..+++++++.|.|+|+|+++.+++.+++++++.++     .++.++.+|+..     ..||
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~fD  142 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGRVFGAAVPKFD  142 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHHHhhhhccCCC
Confidence            678999999999999999999999886668999999999999999999999987     357888888653     3499


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      .|++..
T Consensus       143 ~Vl~D~  148 (264)
T TIGR00446       143 AILLDA  148 (264)
T ss_pred             EEEEcC
Confidence            887764

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.68  E-value=1.2e-07  Score=101.06  Aligned_cols=78  Identities=15%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--------
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ--------  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda--------  665 (687)
                      .+++|.+|||+|||+|+.|..+++++++.|+|+|+|+++.+++.++++++..|+     .++.++.+|+...        
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~~~~~~  323 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLELKPQWR  323 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhccccccccc
Confidence            678899999999999999999999886678999999999999999999999997     3588888887543        


Q ss_pred             -CccEEEEEecCC
Q psy14969        666 -DASRVNISVEPQ  677 (687)
Q Consensus       666 -PFDLILVVfAP~  677 (687)
                       .||.|++.+ ||
T Consensus       324 ~~fD~Vl~Da-PC  335 (434)
T PRK14901        324 GYFDRILLDA-PC  335 (434)
T ss_pred             ccCCEEEEeC-CC
Confidence             489887654 44

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.67  E-value=1.5e-07  Score=96.28  Aligned_cols=74  Identities=14%  Similarity=0.093  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCccEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDASRV  670 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPFDLI  670 (687)
                      ++.+|||+|||+|.++..+|+..   ++|+|+|+++.+++.|+++++.+++     .++.++.+|+..      ..||.|
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-----~~v~~~~~D~~~~~~~~~~~~D~V  244 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-----TNVQFQALDSTQFATAQGEVPDLV  244 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEcCHHHHHHhcCCCCeEE
Confidence            56899999999999999999864   4899999999999999999999886     468999998643      247866


Q ss_pred             EEEecCCCcC
Q psy14969        671 NISVEPQKSG  680 (687)
Q Consensus       671 LVVfAP~K~g  680 (687)
                      ++  .|++.|
T Consensus       245 v~--dPPr~G  252 (315)
T PRK03522        245 LV--NPPRRG  252 (315)
T ss_pred             EE--CCCCCC
Confidence            54  588776

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.66  E-value=8.5e-08  Score=81.31  Aligned_cols=68  Identities=19%  Similarity=0.298  Sum_probs=53.9

Q ss_pred             EEEEcCCccHHHHHHHHhc--CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEEEEE
Q psy14969        601 VLDVGTGSGYTAACLGYMV--RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRVNIS  673 (687)
Q Consensus       601 VLDIGCGTGYLTAaLArLV--GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLILVV  673 (687)
                      |||+|||+|..+..+++.+  ++..+++|+|++++|++.|+++....++      +++++++|+.+     .+||+|+..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~l~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARDLPFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhHCcccCCCeeEEEEc
Confidence            7999999999999999987  3336999999999999999999988765      78889999864     468888774


Q ss_pred             e
Q psy14969        674 V  674 (687)
Q Consensus       674 f  674 (687)
                      .
T Consensus        75 ~   75 (101)
T PF13649_consen   75 G   75 (101)
T ss_dssp             T
T ss_pred             C
Confidence            3

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.66  E-value=1.1e-07  Score=97.65  Aligned_cols=89  Identities=20%  Similarity=0.281  Sum_probs=73.2

Q ss_pred             CCcc-cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC
Q psy14969        574 NCSY-LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE  652 (687)
Q Consensus       574 ~GqT-ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs  652 (687)
                      .|++ +..|.+...+++.+  .+.++.+|||||||+|.+|..+++...   +|+|+|+++.|++.+++++...+.    .
T Consensus        14 ~GQnFL~d~~i~~~Iv~~~--~~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~----~   84 (294)
T PTZ00338         14 FGQHILKNPLVLDKIVEKA--AIKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPL----A   84 (294)
T ss_pred             CCccccCCHHHHHHHHHhc--CCCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCC----C
Confidence            3444 36788999999887  678899999999999999999998754   899999999999999999987764    4


Q ss_pred             CcEEEEEcCCCCCC---ccEEE
Q psy14969        653 GVVNIMRTLPPQQD---ASRVN  671 (687)
Q Consensus       653 gRI~LI~GDAedaP---FDLIL  671 (687)
                      +++.++.+|+...+   ||.|+
T Consensus        85 ~~v~ii~~Dal~~~~~~~d~Vv  106 (294)
T PTZ00338         85 SKLEVIEGDALKTEFPYFDVCV  106 (294)
T ss_pred             CcEEEEECCHhhhcccccCEEE
Confidence            68999999986443   56543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.66  E-value=1.7e-07  Score=100.27  Aligned_cols=76  Identities=12%  Similarity=0.254  Sum_probs=65.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDL  669 (687)
                      .+.+|.+|||+|||+|+.|..+++.+++.++|+|+|+++.+++.+++++++.|+     .++.++.+|+..    .+||.
T Consensus       247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~v~~~~~Da~~~~~~~~fD~  321 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----TIIETIEGDARSFSPEEQPDA  321 (445)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----CeEEEEeCcccccccCCCCCE
Confidence            577899999999999999999998876568999999999999999999999987     368888888654    35999


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |++..
T Consensus       322 Vl~D~  326 (445)
T PRK14904        322 ILLDA  326 (445)
T ss_pred             EEEcC
Confidence            87653

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.66  E-value=1.4e-07  Score=93.87  Aligned_cols=78  Identities=27%  Similarity=0.365  Sum_probs=66.3

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..+.+...+++.+  .+.++.+|||||||+|.+|..+++...   +|+|+|+++.+++.+++++..  .     +++.+
T Consensus        12 l~d~~~~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~-----~~v~i   79 (258)
T PRK14896         12 LIDDRVVDRIVEYA--EDTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--A-----GNVEI   79 (258)
T ss_pred             cCCHHHHHHHHHhc--CCCCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--C-----CCEEE
Confidence            46778888998887  677899999999999999999998843   899999999999999988754  1     47899


Q ss_pred             EEcCCCCCCc
Q psy14969        658 MRTLPPQQDA  667 (687)
Q Consensus       658 I~GDAedaPF  667 (687)
                      +.+|+...++
T Consensus        80 i~~D~~~~~~   89 (258)
T PRK14896         80 IEGDALKVDL   89 (258)
T ss_pred             EEeccccCCc
Confidence            9999876553

>PRK08317 hypothetical protein; Provisional

Probab=98.65  E-value=2.7e-07  Score=85.84  Aligned_cols=83  Identities=30%  Similarity=0.416  Sum_probs=64.3

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+++.+  .+.++.+|||+|||+|..+..++...++.++|+|+|+++.+++.|+++....      ..++.+..++.
T Consensus         7 ~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~   78 (241)
T PRK08317          7 YRARTFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDA   78 (241)
T ss_pred             HHHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEeccc
Confidence            344455555  6778899999999999999999998766789999999999999999883332      23677777775


Q ss_pred             CC-----CCccEEEEE
Q psy14969        663 PQ-----QDASRVNIS  673 (687)
Q Consensus       663 ed-----aPFDLILVV  673 (687)
                      ..     ..||+|+..
T Consensus        79 ~~~~~~~~~~D~v~~~   94 (241)
T PRK08317         79 DGLPFPDGSFDAVRSD   94 (241)
T ss_pred             ccCCCCCCCceEEEEe
Confidence            43     458887764

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.65  E-value=1.9e-07  Score=87.03  Aligned_cols=70  Identities=20%  Similarity=0.200  Sum_probs=57.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---CCCccEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---QQDASRVN  671 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---daPFDLIL  671 (687)
                      ..++.+|||+|||+|+++..+++...   +|+|+|+++.+++.|+++++..+.      ++.++.+|..   ...||.|+
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~fD~Vi   87 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGVRGKFDVIL   87 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC------ceEEEEcccccccCCcccEEE
Confidence            44678999999999999999998753   899999999999999999988765      4677777753   34689876


Q ss_pred             EE
Q psy14969        672 IS  673 (687)
Q Consensus       672 VV  673 (687)
                      ..
T Consensus        88 ~n   89 (179)
T TIGR00537        88 FN   89 (179)
T ss_pred             EC
Confidence            54

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.65  E-value=1.2e-07  Score=80.78  Aligned_cols=70  Identities=23%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-------CCCCccEE
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-------PQQDASRV  670 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-------edaPFDLI  670 (687)
                      |.+|||+|||+|.++..+++..  ..+++|+|+++.+++.|+.++...++    ..++.++.+|.       ...+||+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~D~I   74 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEPLPDGKFDLI   74 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhhccCceeEEE
Confidence            5689999999999999999886  45999999999999999999999887    67899999884       34567876


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      +..
T Consensus        75 v~n   77 (117)
T PF13659_consen   75 VTN   77 (117)
T ss_dssp             EE-
T ss_pred             EEC
Confidence            544

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.63  E-value=1.2e-07  Score=92.98  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-  663 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-  663 (687)
                      ..+++.+  .+.++.+|||||||+|.++..+++.. |.++|+|+|+++.|++.|+++    +        +.++.+|+. 
T Consensus        19 ~~ll~~l--~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~----~--------~~~~~~d~~~   83 (255)
T PRK14103         19 YDLLARV--GAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER----G--------VDARTGDVRD   83 (255)
T ss_pred             HHHHHhC--CCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc----C--------CcEEEcChhh
Confidence            4445555  45678999999999999999999887 577999999999999999763    2        345555543 


Q ss_pred             ---CCCccEEEEEe
Q psy14969        664 ---QQDASRVNISV  674 (687)
Q Consensus       664 ---daPFDLILVVf  674 (687)
                         ..+||+|+...
T Consensus        84 ~~~~~~fD~v~~~~   97 (255)
T PRK14103         84 WKPKPDTDVVVSNA   97 (255)
T ss_pred             CCCCCCceEEEEeh
Confidence               34699988765

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.62  E-value=2.9e-07  Score=92.00  Aligned_cols=85  Identities=15%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             CCCCCCCCccccCCcccCcHHHHHHHHHHhhh-c-CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969        562 RNPYHDYSVMLENCSYLNSPSFIASSLEPALL-K-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK  639 (687)
Q Consensus       562 yqAYsD~pLPIG~GqTISaP~VvAlLLElLke-d-LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~AR  639 (687)
                      ...|.+..+.++.+..+..+.+..++-..+.. . ..++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|+
T Consensus        49 ~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~  127 (251)
T TIGR03704        49 WAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCAR  127 (251)
T ss_pred             cCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHH
Confidence            35677777888888887666554433322210 1 1234589999999999999999876 4569999999999999999


Q ss_pred             HHHHHcCC
Q psy14969        640 ENIRKNHA  647 (687)
Q Consensus       640 KNLKkaG~  647 (687)
                      +|++.++.
T Consensus       128 ~N~~~~~~  135 (251)
T TIGR03704       128 RNLADAGG  135 (251)
T ss_pred             HHHHHcCC
Confidence            99988653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.62  E-value=1.8e-07  Score=86.83  Aligned_cols=76  Identities=22%  Similarity=0.281  Sum_probs=60.2

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..+++.+  .+.++.+|||||||+|.++..+++..   ++|+++|+++.+++.+++++...       .++.++.+|+..
T Consensus         3 ~~i~~~~--~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~-------~~v~ii~~D~~~   70 (169)
T smart00650        3 DKIVRAA--NLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAA-------DNLTVIHGDALK   70 (169)
T ss_pred             HHHHHhc--CCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccC-------CCEEEEECchhc
Confidence            3455555  56788899999999999999999874   48999999999999999987542       378889998765


Q ss_pred             CC-----ccEEEE
Q psy14969        665 QD-----ASRVNI  672 (687)
Q Consensus       665 aP-----FDLILV  672 (687)
                      .+     +|.|+.
T Consensus        71 ~~~~~~~~d~vi~   83 (169)
T smart00650       71 FDLPKLQPYKVVG   83 (169)
T ss_pred             CCccccCCCEEEE
Confidence            43     565543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.62  E-value=2.6e-07  Score=98.50  Aligned_cols=83  Identities=19%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..+...+  .+.++.+|||+|||+|..|..+++.+++.++|+|+|+++.+++.+++|+++.++     .++.++.+|+..
T Consensus       240 ~lv~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~  312 (444)
T PRK14902        240 MLVAPAL--DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARK  312 (444)
T ss_pred             HHHHHHh--CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCccc
Confidence            3444444  577889999999999999999999876678999999999999999999999987     348899998754


Q ss_pred             ------CCccEEEEEe
Q psy14969        665 ------QDASRVNISV  674 (687)
Q Consensus       665 ------aPFDLILVVf  674 (687)
                            ..||.|++..
T Consensus       313 ~~~~~~~~fD~Vl~D~  328 (444)
T PRK14902        313 VHEKFAEKFDKILVDA  328 (444)
T ss_pred             ccchhcccCCEEEEcC
Confidence                  2589887764

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.61  E-value=2.4e-07  Score=99.34  Aligned_cols=78  Identities=17%  Similarity=0.330  Sum_probs=67.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPF  667 (687)
                      .+.+|.+|||+|||+|..|..++.++++.++|+|+|+++.+++.+++++++.++     .++.++.+|+..      ..|
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~~~~~~f  308 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTEYVQDTF  308 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhhhhhccC
Confidence            678999999999999999999999986678999999999999999999999987     357888888754      349


Q ss_pred             cEEEEEecCC
Q psy14969        668 SRVNISVEPQ  677 (687)
Q Consensus       668 DLILVVfAP~  677 (687)
                      |.|++.+ ||
T Consensus       309 D~Vl~Da-PC  317 (431)
T PRK14903        309 DRILVDA-PC  317 (431)
T ss_pred             CEEEECC-CC
Confidence            9887764 44

>PRK14967 putative methyltransferase; Provisional

Probab=98.61  E-value=3.3e-07  Score=88.68  Aligned_cols=72  Identities=26%  Similarity=0.184  Sum_probs=59.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDL  669 (687)
                      .+.++.+|||+|||+|.++..+++..  .++|+++|+++.+++.|++++...++      ++.++.+|..    ...||+
T Consensus        33 ~~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~~~~d~~~~~~~~~fD~  104 (223)
T PRK14967         33 GLGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAGV------DVDVRRGDWARAVEFRPFDV  104 (223)
T ss_pred             ccCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhCC------eeEEEECchhhhccCCCeeE
Confidence            46778999999999999999998762  35899999999999999999988776      4667777653    346898


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       105 Vi~n  108 (223)
T PRK14967        105 VVSN  108 (223)
T ss_pred             EEEC
Confidence            8764

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.61  E-value=2.3e-07  Score=90.40  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...++..+  .+.++.+|||||||+|.++..+++.. +.++|+|+|+++.|++.|++++.          ++.++.+|..
T Consensus        20 ~~~ll~~~--~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~   86 (258)
T PRK01683         20 ARDLLARV--PLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP----------DCQFVEADIA   86 (258)
T ss_pred             HHHHHhhC--CCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC----------CCeEEECchh
Confidence            33444444  46678999999999999999999887 46799999999999999998742          3455555543


Q ss_pred             ----CCCccEEEEEec
Q psy14969        664 ----QQDASRVNISVE  675 (687)
Q Consensus       664 ----daPFDLILVVfA  675 (687)
                          ..+||+|+....
T Consensus        87 ~~~~~~~fD~v~~~~~  102 (258)
T PRK01683         87 SWQPPQALDLIFANAS  102 (258)
T ss_pred             ccCCCCCccEEEEccC
Confidence                236898877643

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.60  E-value=1.9e-07  Score=98.65  Aligned_cols=86  Identities=19%  Similarity=0.243  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+.+.+  .+.++.+|||+|||+|.++..+|+.+.   +|+|+|+++.+++.|++|++.+++     .++.++.+|+
T Consensus       280 l~~~~~~~l--~~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~d~  349 (431)
T TIGR00479       280 LVDRALEAL--ELQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAGTL  349 (431)
T ss_pred             HHHHHHHHh--ccCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeCCH
Confidence            344445544  456778999999999999999998764   899999999999999999999886     4789999996


Q ss_pred             CC---------CCccEEEEEecCCCcC
Q psy14969        663 PQ---------QDASRVNISVEPQKSG  680 (687)
Q Consensus       663 ed---------aPFDLILVVfAP~K~g  680 (687)
                      ..         ..||+|  ++.|++.|
T Consensus       350 ~~~l~~~~~~~~~~D~v--i~dPPr~G  374 (431)
T TIGR00479       350 ETVLPKQPWAGQIPDVL--LLDPPRKG  374 (431)
T ss_pred             HHHHHHHHhcCCCCCEE--EECcCCCC
Confidence            42         247765  46788776

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.60  E-value=1.4e-07  Score=91.67  Aligned_cols=69  Identities=22%  Similarity=0.328  Sum_probs=53.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDL  669 (687)
                      .+.++.+|||||||+|+.+..|++.+ +.++|+|||+++.|++.|++++..          +.+..+++.    ...||+
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~----------~~~~~~d~~~~~~~~sfD~  108 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPN----------INIIQGSLFDPFKDNFFDL  108 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCC----------CcEEEeeccCCCCCCCEEE
Confidence            45678899999999999999999876 467999999999999999986432          233444432    345888


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       109 V~~~  112 (204)
T TIGR03587       109 VLTK  112 (204)
T ss_pred             EEEC
Confidence            8764

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK04266 fibrillarin; Provisional

Probab=98.59  E-value=3.1e-07  Score=91.13  Aligned_cols=86  Identities=19%  Similarity=0.216  Sum_probs=63.8

Q ss_pred             HHHHHHHHHh-hhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        582 SFIASSLEPA-LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       582 ~VvAlLLElL-kedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      .+.+.++..+ ...+++|.+|||+|||||+.+..+++.++ .|+|+|+|+++.|++.+.+++++.       .++.++.+
T Consensus        56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~  127 (226)
T PRK04266         56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-------KNIIPILA  127 (226)
T ss_pred             chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEEC
Confidence            3455555422 11678999999999999999999999985 789999999999999887776543       24666777


Q ss_pred             CCCC--------CCccEEEEEec
Q psy14969        661 LPPQ--------QDASRVNISVE  675 (687)
Q Consensus       661 DAed--------aPFDLILVVfA  675 (687)
                      |+..        ..||+|+...+
T Consensus       128 D~~~~~~~~~l~~~~D~i~~d~~  150 (226)
T PRK04266        128 DARKPERYAHVVEKVDVIYQDVA  150 (226)
T ss_pred             CCCCcchhhhccccCCEEEECCC
Confidence            7542        34888876543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.58  E-value=6e-07  Score=84.41  Aligned_cols=85  Identities=26%  Similarity=0.390  Sum_probs=65.3

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....++..+  ...++.+|||||||+|..+..++...++..+|+++|+++.+++.|++++...+.    ..++.++.++.
T Consensus        39 ~~~~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~  112 (239)
T PRK00216         39 WRRKTIKWL--GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDA  112 (239)
T ss_pred             HHHHHHHHh--CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEeccc
Confidence            334445554  455778999999999999999998874357999999999999999999877554    34677777775


Q ss_pred             CC-----CCccEEEEE
Q psy14969        663 PQ-----QDASRVNIS  673 (687)
Q Consensus       663 ed-----aPFDLILVV  673 (687)
                      ..     .+||+|+..
T Consensus       113 ~~~~~~~~~~D~I~~~  128 (239)
T PRK00216        113 EALPFPDNSFDAVTIA  128 (239)
T ss_pred             ccCCCCCCCccEEEEe
Confidence            43     458887654

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=4.4e-07  Score=90.21  Aligned_cols=93  Identities=20%  Similarity=0.222  Sum_probs=69.9

Q ss_pred             cccCcHHHHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969        576 SYLNSPSFIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV  654 (687)
Q Consensus       576 qTISaP~VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR  654 (687)
                      |+.+.+.+.+.++.... ...-.|..|+|+|||||.++...+.+. + .+|+|+|+++++++.|++|..+.      .++
T Consensus        23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a-~~V~~vdiD~~a~ei~r~N~~~l------~g~   94 (198)
T COG2263          23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-A-SRVLAVDIDPEALEIARANAEEL------LGD   94 (198)
T ss_pred             ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-C-cEEEEEecCHHHHHHHHHHHHhh------CCc
Confidence            44455556666655542 244467889999999999999887664 3 49999999999999999999994      368


Q ss_pred             EEEEEcCCCC--CCccEEEEEecCCC
Q psy14969        655 VNIMRTLPPQ--QDASRVNISVEPQK  678 (687)
Q Consensus       655 I~LI~GDAed--aPFDLILVVfAP~K  678 (687)
                      +.++.+|..+  .++|  +++-.|+-
T Consensus        95 v~f~~~dv~~~~~~~d--tvimNPPF  118 (198)
T COG2263          95 VEFVVADVSDFRGKFD--TVIMNPPF  118 (198)
T ss_pred             eEEEEcchhhcCCccc--eEEECCCC
Confidence            9999999885  4566  44444543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.56  E-value=3.2e-07  Score=92.38  Aligned_cols=69  Identities=17%  Similarity=0.111  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVNI  672 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLILV  672 (687)
                      ++.+|||||||+|..+..+++..   .+|+|+|+++.+++.|+++++..++      ++.+..+|..    ...||+|+.
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~~~~~fD~I~~  190 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSASIQEEYDFILS  190 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhcccccCCccEEEE
Confidence            45699999999999999999864   4999999999999999999988776      4566655543    345898876


Q ss_pred             Ee
Q psy14969        673 SV  674 (687)
Q Consensus       673 Vf  674 (687)
                      ..
T Consensus       191 ~~  192 (287)
T PRK12335        191 TV  192 (287)
T ss_pred             cc
Confidence            53

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.56  E-value=4.6e-07  Score=96.28  Aligned_cols=83  Identities=13%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-  663 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-  663 (687)
                      ..+...+  .+.+|.+|||+|||+|+.|..+++.++ .++|+|+|+++.+++.+++++++.++    ..++.+..++.. 
T Consensus       228 ~~~~~~L--~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~~~d~~~  300 (426)
T TIGR00563       228 QWVATWL--APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL----TIKAETKDGDGRG  300 (426)
T ss_pred             HHHHHHh--CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecccccc
Confidence            3444445  678899999999999999999999885 78999999999999999999999987    223444666643 


Q ss_pred             ------CCCccEEEEEe
Q psy14969        664 ------QQDASRVNISV  674 (687)
Q Consensus       664 ------daPFDLILVVf  674 (687)
                            ...||.|++.+
T Consensus       301 ~~~~~~~~~fD~VllDa  317 (426)
T TIGR00563       301 PSQWAENEQFDRILLDA  317 (426)
T ss_pred             ccccccccccCEEEEcC
Confidence                  24599887754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.54  E-value=2.9e-07  Score=87.69  Aligned_cols=73  Identities=12%  Similarity=0.129  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--------CCCcc
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--------QQDAS  668 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--------daPFD  668 (687)
                      ...+|||||||+|.++..+|+.. |.+.|+|+|+++.+++.|++++...++     .++.++.+++.        ...+|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni~~i~~d~~~~~~~~~~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL-----KNLHVLCGDANELLDKFFPDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCEEEEccCHHHHHHhhCCCCcee
Confidence            45699999999999999999886 678999999999999999999998876     47899999864        23588


Q ss_pred             EEEEEec
Q psy14969        669 RVNISVE  675 (687)
Q Consensus       669 LILVVfA  675 (687)
                      .|++.+.
T Consensus        90 ~v~~~~p   96 (194)
T TIGR00091        90 KVFLNFP   96 (194)
T ss_pred             EEEEECC
Confidence            8887763

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.54  E-value=4.1e-07  Score=86.54  Aligned_cols=69  Identities=22%  Similarity=0.187  Sum_probs=58.8

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEE
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNI  672 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILV  672 (687)
                      ++|||||||+|..+..+++.. +..+|+|+|+++.+++.|+++++..++    ..++.++.+|...    ..||+|+.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~~~~~fD~I~~   73 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDPFPDTYDLVFG   73 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCCCCCCCCEeeh
Confidence            379999999999999999887 467999999999999999999999887    6688888877632    35898865

>PRK04457 spermidine synthase; Provisional

Probab=98.54  E-value=3.8e-07  Score=91.76  Aligned_cols=75  Identities=8%  Similarity=0.165  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      ..++.+|||||||+|+++..+++.. |..+|+++|+++++++.|++++...+.    ..++.++.+|+.      ..+||
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~----~~rv~v~~~Da~~~l~~~~~~yD  138 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN----GERFEVIEADGAEYIAVHRHSTD  138 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC----CCceEEEECCHHHHHHhCCCCCC
Confidence            3456899999999999999999887 578999999999999999998754432    468999999973      24699


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++.+
T Consensus       139 ~I~~D~  144 (262)
T PRK04457        139 VILVDG  144 (262)
T ss_pred             EEEEeC
Confidence            998874

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.53  E-value=4e-07  Score=89.97  Aligned_cols=79  Identities=22%  Similarity=0.265  Sum_probs=66.4

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      .+..+.+...+++.+  .+.++.+|||||||+|.+|..|++...   .|+++|+++.+++.+++++..       ..++.
T Consensus        11 fl~d~~i~~~i~~~~--~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~-------~~~v~   78 (253)
T TIGR00755        11 FLIDESVIQKIVEAA--NVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL-------YERLE   78 (253)
T ss_pred             cCCCHHHHHHHHHhc--CCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc-------CCcEE
Confidence            356777888888887  677889999999999999999999874   699999999999999987643       24788


Q ss_pred             EEEcCCCCCCc
Q psy14969        657 IMRTLPPQQDA  667 (687)
Q Consensus       657 LI~GDAedaPF  667 (687)
                      ++.+|+...++
T Consensus        79 v~~~D~~~~~~   89 (253)
T TIGR00755        79 VIEGDALKVDL   89 (253)
T ss_pred             EEECchhcCCh
Confidence            99999876664

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG2904|consensus

Probab=98.52  E-value=5.4e-07  Score=94.12  Aligned_cols=108  Identities=19%  Similarity=0.281  Sum_probs=82.4

Q ss_pred             HHHHHHHhCCCccCCCCCC----CCCCCCCccccCCcccCcHHHHH---HHHHHhhh-cCCCCCeEEEEcCCccHHHHHH
Q psy14969        544 ELRDLMIKVDRKDFCPPNR----NPYHDYSVMLENCSYLNSPSFIA---SSLEPALL-KLKPGDTVLDVGTGSGYTAACL  615 (687)
Q Consensus       544 EV~qAMraVPReaFVP~gy----qAYsD~pLPIG~GqTISaP~VvA---lLLElLke-dLkpG~RVLDIGCGTGYLTAaL  615 (687)
                      .+..|.++  |-.-.|-.|    ++|.|-.+....|..|++|++..   ++++.+.. ....+..+||+|||||.++..+
T Consensus        89 ~i~~~~~~--R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsl  166 (328)
T KOG2904|consen   89 SIRWACLQ--RYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSL  166 (328)
T ss_pred             HHHHHHHH--HHhcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHH
Confidence            44455444  444455553    68899999999999999997644   44444422 1224558999999999999999


Q ss_pred             HHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        616 GYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       616 ArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ++.++ .++|+|+|.++.++..|.+|+.++++    .+++.++
T Consensus       167 l~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~v~  204 (328)
T KOG2904|consen  167 LHGLP-QCTVTAIDVSKAAIKLAKENAQRLKL----SGRIEVI  204 (328)
T ss_pred             HhcCC-CceEEEEeccHHHHHHHHHHHHHHhh----cCceEEE
Confidence            99985 88999999999999999999999987    5555555

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.52  E-value=5.2e-07  Score=96.21  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=65.3

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-  663 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-  663 (687)
                      ..+++.+  ....+.+|||+|||+|.++..+++.. |.++|+++|+++.|++.|++|++.++...  ..++.++.+|.. 
T Consensus       218 rllL~~l--p~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~~D~l~  292 (378)
T PRK15001        218 RFFMQHL--PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALS  292 (378)
T ss_pred             HHHHHhC--CcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCccc--CceEEEEEccccc
Confidence            4455555  22334699999999999999999886 67899999999999999999998876410  136788777743 


Q ss_pred             ---CCCccEEEEEecCCCc
Q psy14969        664 ---QQDASRVNISVEPQKS  679 (687)
Q Consensus       664 ---daPFDLILVVfAP~K~  679 (687)
                         ...||+|+.. .|...
T Consensus       293 ~~~~~~fDlIlsN-PPfh~  310 (378)
T PRK15001        293 GVEPFRFNAVLCN-PPFHQ  310 (378)
T ss_pred             cCCCCCEEEEEEC-cCccc
Confidence               2358877553 34343

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.51  E-value=6.9e-07  Score=95.12  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-  664 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-  664 (687)
                      .+...+  .+.+|.+|||+|||+|..|..+++.++ .++|+|+|+++.+++.+++++++.++      .+.++.+|+.. 
T Consensus       235 ~~~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~  305 (427)
T PRK10901        235 LAATLL--APQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDP  305 (427)
T ss_pred             HHHHHc--CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccc
Confidence            334444  678899999999999999999999874 47999999999999999999999887      36778888743 


Q ss_pred             ------CCccEEEEEe
Q psy14969        665 ------QDASRVNISV  674 (687)
Q Consensus       665 ------aPFDLILVVf  674 (687)
                            .+||.|++..
T Consensus       306 ~~~~~~~~fD~Vl~D~  321 (427)
T PRK10901        306 AQWWDGQPFDRILLDA  321 (427)
T ss_pred             hhhcccCCCCEEEECC
Confidence                  3589886654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.51  E-value=2.9e-07  Score=96.03  Aligned_cols=71  Identities=17%  Similarity=0.218  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRV  670 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLI  670 (687)
                      .++.+|||||||+|+++..|++..   ++|+|||+++.+++.|+.+....+.    ..++.++.++++.     ..||+|
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l~~~~~~FD~V  202 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKLADEGRKFDAV  202 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHhhhccCCCCEE
Confidence            467799999999999999998753   5999999999999999988765543    3578888887543     358988


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      +..
T Consensus       203 i~~  205 (322)
T PLN02396        203 LSL  205 (322)
T ss_pred             EEh
Confidence            764

>PLN02672 methionine S-methyltransferase

Probab=98.51  E-value=4.8e-07  Score=107.04  Aligned_cols=109  Identities=16%  Similarity=0.064  Sum_probs=82.1

Q ss_pred             CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCC---CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy14969        562 RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLK---PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFS  638 (687)
Q Consensus       562 yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLk---pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~A  638 (687)
                      ++.+....+.++.|..|++|.+..++-. +.....   ++.+|||||||||+++..+++.. +.++|+|+|+++.+++.|
T Consensus        81 ~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A  158 (1082)
T PLN02672         81 FRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVA  158 (1082)
T ss_pred             eEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence            4566777888999999999988776544 421111   24689999999999999999987 467999999999999999


Q ss_pred             HHHHHHcCCC---c--------cCCCcEEEEEcCCCC------CCccEEEE
Q psy14969        639 KENIRKNHAH---L--------LDEGVVNIMRTLPPQ------QDASRVNI  672 (687)
Q Consensus       639 RKNLKkaG~~---V--------aSsgRI~LI~GDAed------aPFDLILV  672 (687)
                      ++|++.+++.   +        ....++.++.+|...      .+||+|+.
T Consensus       159 ~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVS  209 (1082)
T PLN02672        159 WINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVG  209 (1082)
T ss_pred             HHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEE
Confidence            9999986531   0        012478999998542      24786644

>PRK14968 putative methyltransferase; Provisional

Probab=98.49  E-value=1.4e-06  Score=79.61  Aligned_cols=71  Identities=31%  Similarity=0.334  Sum_probs=56.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc-EEEEEcCCCC----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV-VNIMRTLPPQ----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR-I~LI~GDAed----aPFDL  669 (687)
                      ..++.+|||+|||+|+++..++...   ++|+|+|+++.+++.|++++...+.    ..+ +.++.+|...    ..||+
T Consensus        21 ~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~d~   93 (188)
T PRK14968         21 DKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNI----RNNGVEVIRSDLFEPFRGDKFDV   93 (188)
T ss_pred             ccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEeccccccccccCceE
Confidence            4678899999999999999999873   5899999999999999999988775    222 6777766432    25887


Q ss_pred             EEE
Q psy14969        670 VNI  672 (687)
Q Consensus       670 ILV  672 (687)
                      |+.
T Consensus        94 vi~   96 (188)
T PRK14968         94 ILF   96 (188)
T ss_pred             EEE
Confidence            764

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.49  E-value=8.2e-07  Score=86.91  Aligned_cols=88  Identities=16%  Similarity=0.072  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...++..+. ...++.+|||+|||+|++++.++....  ++|+++|+++.+++.|++|++.+++     .++.++.+|.
T Consensus        40 v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~~D~  111 (199)
T PRK10909         40 VRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKA-----GNARVVNTNA  111 (199)
T ss_pred             HHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEchH
Confidence            4444555442 234678999999999999985433332  4899999999999999999999886     3688888875


Q ss_pred             CC------CCccEEEEEecCC-CcC
Q psy14969        663 PQ------QDASRVNISVEPQ-KSG  680 (687)
Q Consensus       663 ed------aPFDLILVVfAP~-K~g  680 (687)
                      ..      .+||+|  .+.|+ +.+
T Consensus       112 ~~~l~~~~~~fDlV--~~DPPy~~g  134 (199)
T PRK10909        112 LSFLAQPGTPHNVV--FVDPPFRKG  134 (199)
T ss_pred             HHHHhhcCCCceEE--EECCCCCCC
Confidence            32      257765  45566 443

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.47  E-value=1.3e-06  Score=88.01  Aligned_cols=83  Identities=22%  Similarity=0.174  Sum_probs=67.6

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+++.+  .+.++.+|||||||+|.++..+++.. |.++++++|. +.+++.|++++.+.++    .+++.++.+|..
T Consensus       138 ~~~l~~~~--~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~  209 (306)
T TIGR02716       138 IQLLLEEA--KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIY  209 (306)
T ss_pred             HHHHHHHc--CCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCcc
Confidence            34455555  56788999999999999999999997 6889999997 7999999999999987    678999999964


Q ss_pred             C---CCccEEEEEe
Q psy14969        664 Q---QDASRVNISV  674 (687)
Q Consensus       664 d---aPFDLILVVf  674 (687)
                      .   .++|+|++..
T Consensus       210 ~~~~~~~D~v~~~~  223 (306)
T TIGR02716       210 KESYPEADAVLFCR  223 (306)
T ss_pred             CCCCCCCCEEEeEh
Confidence            3   2368776543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06202 hypothetical protein; Provisional

Probab=98.47  E-value=9.5e-07  Score=85.45  Aligned_cols=74  Identities=20%  Similarity=0.148  Sum_probs=53.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC---CCCCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL---PPQQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLV---GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD---AedaPFD  668 (687)
                      ..++.+|||||||+|.++..|++.+   ++..+|+|+|+++.|++.|+++....++      ++....++   .....||
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~~l~~~~~~fD  131 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV------TFRQAVSDELVAEGERFD  131 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC------eEEEEecccccccCCCcc
Confidence            3567899999999999999988754   3446999999999999999988655443      12222111   1235699


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|+...
T Consensus       132 ~V~~~~  137 (232)
T PRK06202        132 VVTSNH  137 (232)
T ss_pred             EEEECC
Confidence            888864

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.46  E-value=1.1e-06  Score=90.26  Aligned_cols=85  Identities=21%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|.+.+.++..+  .+++|.+|||+|||||.++..++...   +.|+|+|+++.|++.|+.|++..++    .+ +.++
T Consensus       166 l~~~la~~~~~l~--~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~----~~-i~~~  235 (329)
T TIGR01177       166 MDPKLARAMVNLA--RVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGI----ED-FFVK  235 (329)
T ss_pred             CCHHHHHHHHHHh--CCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCC----CC-CeEE
Confidence            4566777777665  67889999999999999988876653   4899999999999999999999887    33 7788


Q ss_pred             EcCCCCC-----CccEEEEE
Q psy14969        659 RTLPPQQ-----DASRVNIS  673 (687)
Q Consensus       659 ~GDAeda-----PFDLILVV  673 (687)
                      .+|+...     .||.|+..
T Consensus       236 ~~D~~~l~~~~~~~D~Iv~d  255 (329)
T TIGR01177       236 RGDATKLPLSSESVDAIATD  255 (329)
T ss_pred             ecchhcCCcccCCCCEEEEC
Confidence            8887654     46766543

This family is found exclusively in the Archaea.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.46  E-value=8.5e-07  Score=93.23  Aligned_cols=75  Identities=11%  Similarity=0.066  Sum_probs=61.9

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPFDL  669 (687)
                      .++.+|||+|||+|.+++.+|...   .+|+|||+++.+++.|++|++.+++     .++.++.+++..      .+||+
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~-----~~~~~~~~d~~~~~~~~~~~~D~  303 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGL-----DNLSFAALDSAKFATAQMSAPEL  303 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHHHHhcCCCCCE
Confidence            356899999999999999998654   4899999999999999999999986     378999988642      24775


Q ss_pred             EEEEecCCCcC
Q psy14969        670 VNISVEPQKSG  680 (687)
Q Consensus       670 ILVVfAP~K~g  680 (687)
                      |  ++.|++.|
T Consensus       304 v--i~DPPr~G  312 (374)
T TIGR02085       304 V--LVNPPRRG  312 (374)
T ss_pred             E--EECCCCCC
Confidence            4  45688876

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.45  E-value=1.5e-06  Score=90.44  Aligned_cols=89  Identities=19%  Similarity=0.055  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhhhc-CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        582 SFIASSLEPALLK-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       582 ~VvAlLLElLked-LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      .++..++..+... ..++.+|||||||+|.++..+++..   .+|+|+|+++.|++.|+++++..+.......++.+..+
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~  204 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN  204 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence            3455556555221 1257899999999999999999863   48999999999999999998875321011235677777


Q ss_pred             CCC--CCCccEEEEE
Q psy14969        661 LPP--QQDASRVNIS  673 (687)
Q Consensus       661 DAe--daPFDLILVV  673 (687)
                      |.+  ...||+|+..
T Consensus       205 Dl~~l~~~fD~Vv~~  219 (315)
T PLN02585        205 DLESLSGKYDTVTCL  219 (315)
T ss_pred             chhhcCCCcCEEEEc
Confidence            754  3569988754

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.45  E-value=6e-07  Score=72.16  Aligned_cols=63  Identities=21%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             EEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----ccEEEEEe
Q psy14969        602 LDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----ASRVNISV  674 (687)
Q Consensus       602 LDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FDLILVVf  674 (687)
                      ||||||+|..+..+++.  +..+|+++|+++++++.|+++....+        +.+..++...+|     ||.|+...
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~~~l~~~~~sfD~v~~~~   68 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDAEDLPFPDNSFDVVFSNS   68 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBTTSSSS-TT-EEEEEEES
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC--------chheeehHHhCcccccccccccccc
Confidence            89999999999999998  35699999999999999999877654        347777776554     67776653

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.45  E-value=9.3e-07  Score=93.99  Aligned_cols=80  Identities=20%  Similarity=0.209  Sum_probs=62.0

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+++.+  .+.++.+|||||||+|..+..+++..+  ++|+|+|+++.+++.|+++.....      .++.+..+|..
T Consensus       255 te~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~------~~v~~~~~d~~  324 (475)
T PLN02336        255 TKEFVDKL--DLKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK------CSVEFEVADCT  324 (475)
T ss_pred             HHHHHHhc--CCCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC------CceEEEEcCcc
Confidence            34455555  467788999999999999999998753  589999999999999998875432      36888888754


Q ss_pred             C-----CCccEEEEE
Q psy14969        664 Q-----QDASRVNIS  673 (687)
Q Consensus       664 d-----aPFDLILVV  673 (687)
                      .     ..||+|+..
T Consensus       325 ~~~~~~~~fD~I~s~  339 (475)
T PLN02336        325 KKTYPDNSFDVIYSR  339 (475)
T ss_pred             cCCCCCCCEEEEEEC
Confidence            3     348888764

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.44  E-value=1.1e-06  Score=92.25  Aligned_cols=80  Identities=18%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC--
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP--  662 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA--  662 (687)
                      ..+++.+  ......+|||+|||+|+++..+++.. |..+|+++|+++.|++.|+++++.+++      ...++.+|.  
T Consensus       186 ~lLl~~l--~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~  256 (342)
T PRK09489        186 QLLLSTL--TPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFS  256 (342)
T ss_pred             HHHHHhc--cccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEccccc
Confidence            4445544  22335689999999999999999886 567999999999999999999999886      224444442  


Q ss_pred             -CCCCccEEEEE
Q psy14969        663 -PQQDASRVNIS  673 (687)
Q Consensus       663 -edaPFDLILVV  673 (687)
                       ...+||+|+..
T Consensus       257 ~~~~~fDlIvsN  268 (342)
T PRK09489        257 DIKGRFDMIISN  268 (342)
T ss_pred             ccCCCccEEEEC
Confidence             23569988664

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.44  E-value=7e-07  Score=91.14  Aligned_cols=85  Identities=15%  Similarity=0.174  Sum_probs=68.1

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +-+.++.... .+....+|||+|||+|.++.++|+... ..+|+|||+++.|++.|+++++.+++    ..++.++++|.
T Consensus        31 ~DaiLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di  104 (248)
T COG4123          31 TDAILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADI  104 (248)
T ss_pred             cHHHHHHhhc-ccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhH
Confidence            4444544443 344578999999999999999999974 58999999999999999999999998    89999999995


Q ss_pred             CC-------CCccEEEEE
Q psy14969        663 PQ-------QDASRVNIS  673 (687)
Q Consensus       663 ed-------aPFDLILVV  673 (687)
                      ..       ..||+|++.
T Consensus       105 ~~~~~~~~~~~fD~Ii~N  122 (248)
T COG4123         105 KEFLKALVFASFDLIICN  122 (248)
T ss_pred             HHhhhcccccccCEEEeC
Confidence            42       236766443

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.44  E-value=1.1e-06  Score=88.08  Aligned_cols=79  Identities=18%  Similarity=0.184  Sum_probs=61.5

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...++..+  .+.++.+|||||||+|..+..+++..  .++|+|+|+++.+++.|+++...       ..++.+..+|..
T Consensus        41 ~~~~l~~l--~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~  109 (263)
T PTZ00098         41 TTKILSDI--ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDIL  109 (263)
T ss_pred             HHHHHHhC--CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcc
Confidence            34455555  67889999999999999999998764  36999999999999999988654       236788887754


Q ss_pred             C-----CCccEEEEE
Q psy14969        664 Q-----QDASRVNIS  673 (687)
Q Consensus       664 d-----aPFDLILVV  673 (687)
                      .     ..||+|+..
T Consensus       110 ~~~~~~~~FD~V~s~  124 (263)
T PTZ00098        110 KKDFPENTFDMIYSR  124 (263)
T ss_pred             cCCCCCCCeEEEEEh
Confidence            3     458888763

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.44  E-value=3.7e-07  Score=88.87  Aligned_cols=77  Identities=13%  Similarity=0.069  Sum_probs=54.5

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+++.+  ...++.+|||||||+|.++..+++..   .+|+|+|+++.|++.|+++....          .++.+|.
T Consensus        30 ~a~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~----------~~~~~d~   94 (251)
T PRK10258         30 SADALLAML--PQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAAD----------HYLAGDI   94 (251)
T ss_pred             HHHHHHHhc--CccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCC----------CEEEcCc
Confidence            444555554  23456899999999999999988653   48999999999999998874321          3344554


Q ss_pred             CC-----CCccEEEEEe
Q psy14969        663 PQ-----QDASRVNISV  674 (687)
Q Consensus       663 ed-----aPFDLILVVf  674 (687)
                      ..     ..||+|+...
T Consensus        95 ~~~~~~~~~fD~V~s~~  111 (251)
T PRK10258         95 ESLPLATATFDLAWSNL  111 (251)
T ss_pred             ccCcCCCCcEEEEEECc
Confidence            32     3488876543

>KOG0820|consensus

Probab=98.43  E-value=8.7e-07  Score=92.44  Aligned_cols=89  Identities=22%  Similarity=0.276  Sum_probs=78.1

Q ss_pred             CccccCCccc-CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        569 SVMLENCSYL-NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       569 pLPIG~GqTI-SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      .+..+.|++| ..|.+.+.+++..  .+++++.|||||.|||.+|..|.+++.   +|+|+|+++.|+..-.++.+....
T Consensus        31 kfnkd~GQHilkNp~v~~~I~~ka--~~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~  105 (315)
T KOG0820|consen   31 KFNKDFGQHILKNPLVIDQIVEKA--DLKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPK  105 (315)
T ss_pred             ccccccchhhhcCHHHHHHHHhcc--CCCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCc
Confidence            3445677776 6788999998887  899999999999999999999998875   899999999999999999988876


Q ss_pred             CccCCCcEEEEEcCCCCCC
Q psy14969        648 HLLDEGVVNIMRTLPPQQD  666 (687)
Q Consensus       648 ~VaSsgRI~LI~GDAedaP  666 (687)
                          ++++.+++||.-..+
T Consensus       106 ----~~kLqV~~gD~lK~d  120 (315)
T KOG0820|consen  106 ----SGKLQVLHGDFLKTD  120 (315)
T ss_pred             ----cceeeEEecccccCC
Confidence                789999999987655

>PLN03075 nicotianamine synthase; Provisional

Probab=98.42  E-value=1.8e-06  Score=89.94  Aligned_cols=75  Identities=12%  Similarity=0.029  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCCcc-HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCccCCCcEEEEEcCCCC-----CCcc
Q psy14969        596 KPGDTVLDVGTGSG-YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK-NHAHLLDEGVVNIMRTLPPQ-----QDAS  668 (687)
Q Consensus       596 kpG~RVLDIGCGTG-YLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk-aG~~VaSsgRI~LI~GDAed-----aPFD  668 (687)
                      .++.+|+|||||.| +.+..+++...|+++++|+|+++++++.|++.++. .++    ..++.|..+|+.+     .+||
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL----~~rV~F~~~Da~~~~~~l~~FD  197 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL----SKRMFFHTADVMDVTESLKEYD  197 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc----cCCcEEEECchhhcccccCCcC
Confidence            37789999999955 55566665555789999999999999999999965 676    6789999988642     5799


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++-+
T Consensus       198 lVF~~A  203 (296)
T PLN03075        198 VVFLAA  203 (296)
T ss_pred             EEEEec
Confidence            998873

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.40  E-value=1.7e-06  Score=90.58  Aligned_cols=58  Identities=24%  Similarity=0.283  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      +.+|||+|||+|.++..+++.+.   +|+|+|+++.|++.|++|++.+++     .++.++.+++.
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~d~~  255 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRMSAE  255 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEcCHH
Confidence            34799999999999999998864   899999999999999999999987     36888888854

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.38  E-value=2.1e-06  Score=91.04  Aligned_cols=77  Identities=21%  Similarity=0.117  Sum_probs=59.7

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..+++.+  .+++|.+|||||||+|.++..+++..+  ++|+|+|+++++++.|+++++.  .      .+.+..++...
T Consensus       157 ~~l~~~l--~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~--l------~v~~~~~D~~~  224 (383)
T PRK11705        157 DLICRKL--QLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG--L------PVEIRLQDYRD  224 (383)
T ss_pred             HHHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc--C------eEEEEECchhh
Confidence            3444544  678999999999999999999998753  5899999999999999998743  2      35666666543


Q ss_pred             --CCccEEEEE
Q psy14969        665 --QDASRVNIS  673 (687)
Q Consensus       665 --aPFDLILVV  673 (687)
                        ..||.|+..
T Consensus       225 l~~~fD~Ivs~  235 (383)
T PRK11705        225 LNGQFDRIVSV  235 (383)
T ss_pred             cCCCCCEEEEe
Confidence              469988654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.37  E-value=1.8e-06  Score=80.84  Aligned_cols=81  Identities=19%  Similarity=0.212  Sum_probs=58.1

Q ss_pred             HHHHHHHHhhhc-CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPALLK-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLked-LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      +...+++.+... ...+.+|||||||+|+.+..+++.. +..+|+++|+++.+++.|++++..         ++.++.++
T Consensus        19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d   88 (240)
T TIGR02072        19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSE---------NVQFICGD   88 (240)
T ss_pred             HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCC---------CCeEEecc
Confidence            344444444211 1345799999999999999999886 577899999999999999886541         45666666


Q ss_pred             CCC-----CCccEEEEE
Q psy14969        662 PPQ-----QDASRVNIS  673 (687)
Q Consensus       662 Aed-----aPFDLILVV  673 (687)
                      ...     ..||+|+..
T Consensus        89 ~~~~~~~~~~fD~vi~~  105 (240)
T TIGR02072        89 AEKLPLEDSSFDLIVSN  105 (240)
T ss_pred             hhhCCCCCCceeEEEEh
Confidence            543     347887764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG1540|consensus

Probab=98.37  E-value=1.5e-06  Score=90.21  Aligned_cols=73  Identities=22%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCC-----cEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPH-----GKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~-----GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaPFD  668 (687)
                      .+..++++|||++|||.+|..+.+.+..+     ++|+.+|++|+|++.|+++.++.++  ....++.++.|||+++|||
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~~~~~w~~~dAE~LpFd  174 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL--KASSRVEWVEGDAEDLPFD  174 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcCCceEEEeCCcccCCCC
Confidence            66778999999999999999999988632     8999999999999999999988665  3345699999999998864

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.37  E-value=1.8e-06  Score=90.50  Aligned_cols=58  Identities=22%  Similarity=0.237  Sum_probs=51.6

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      +.+|||++||+|.++..+++.+.   +|+|||+++.+++.|++|++.+++     .++.++.+|+.
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~d~~  264 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGI-----DNVQIIRMSAE  264 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEECCHH
Confidence            35799999999999999998864   899999999999999999999887     37888888864

>PRK05785 hypothetical protein; Provisional

Probab=98.36  E-value=7.6e-07  Score=87.49  Aligned_cols=66  Identities=18%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRV  670 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLI  670 (687)
                      .++.+|||||||||.++..+++..  .++|+|+|++++|++.|+++.             .++++++..     ..||+|
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~~d~sfD~v  114 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPFRDKSFDVV  114 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCCCCCCEEEE
Confidence            457899999999999999999875  259999999999999998641             123444433     348988


Q ss_pred             EEEecC
Q psy14969        671 NISVEP  676 (687)
Q Consensus       671 LVVfAP  676 (687)
                      +..+.-
T Consensus       115 ~~~~~l  120 (226)
T PRK05785        115 MSSFAL  120 (226)
T ss_pred             EecChh
Confidence            887643

>PTZ00146 fibrillarin; Provisional

Probab=98.36  E-value=1.7e-06  Score=90.10  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             HHHHHHHHhhh-cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPALL-KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLke-dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      +.|.++.-+.. .++++++|||+|||+|+.|..+|..+++.++|+|+|+++.|.+...+..+..       .++.++.+|
T Consensus       117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-------~NI~~I~~D  189 (293)
T PTZ00146        117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-------PNIVPIIED  189 (293)
T ss_pred             HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCCEEEECC
Confidence            45454333321 5789999999999999999999999988899999999987554333332221       245556666


Q ss_pred             CCC--------CCccEEEEEecCCC
Q psy14969        662 PPQ--------QDASRVNISVEPQK  678 (687)
Q Consensus       662 Aed--------aPFDLILVVfAP~K  678 (687)
                      +..        ..+|+|+..++.+.
T Consensus       190 a~~p~~y~~~~~~vDvV~~Dva~pd  214 (293)
T PTZ00146        190 ARYPQKYRMLVPMVDVIFADVAQPD  214 (293)
T ss_pred             ccChhhhhcccCCCCEEEEeCCCcc
Confidence            532        23799998876543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.34  E-value=2.7e-06  Score=88.13  Aligned_cols=80  Identities=19%  Similarity=0.079  Sum_probs=56.6

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ  665 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda  665 (687)
                      .++..+  ....|.+|||||||+|+++..++....  ..|+|+|+++.++..++......+.    ..++.++.++....
T Consensus       113 ~l~~~l--~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i~~~~~d~e~l  184 (322)
T PRK15068        113 RVLPHL--SPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGN----DQRAHLLPLGIEQL  184 (322)
T ss_pred             HHHHhh--CCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEeCCHHHC
Confidence            334444  345688999999999999999998743  3799999999998765544333221    23678887775543


Q ss_pred             ----CccEEEEE
Q psy14969        666 ----DASRVNIS  673 (687)
Q Consensus       666 ----PFDLILVV  673 (687)
                          .||+|+..
T Consensus       185 p~~~~FD~V~s~  196 (322)
T PRK15068        185 PALKAFDTVFSM  196 (322)
T ss_pred             CCcCCcCEEEEC
Confidence                47888764

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.34  E-value=4.2e-06  Score=78.03  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=60.9

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..+++.+  ...++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++. .      ..++.++.++...
T Consensus        29 ~~~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~------~~~i~~~~~d~~~   99 (223)
T TIGR01934        29 RRAVKLI--GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L------PLNIEFIQADAEA   99 (223)
T ss_pred             HHHHHHh--ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c------CCCceEEecchhc
Confidence            3344444  34578899999999999999999887533799999999999999999876 2      2356777777543


Q ss_pred             -----CCccEEEEEe
Q psy14969        665 -----QDASRVNISV  674 (687)
Q Consensus       665 -----aPFDLILVVf  674 (687)
                           .+||+|+..+
T Consensus       100 ~~~~~~~~D~i~~~~  114 (223)
T TIGR01934       100 LPFEDNSFDAVTIAF  114 (223)
T ss_pred             CCCCCCcEEEEEEee
Confidence                 3588876654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.34  E-value=6.5e-07  Score=91.32  Aligned_cols=67  Identities=22%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVN  671 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLIL  671 (687)
                      +|.+|||||||-|.++..||++..   .|+|+|+++.+++.|+....+.++      .+++.....+     ..+||+|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~~~~FDvV~  129 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASAGGQFDVVT  129 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhcCCCccEEE
Confidence            789999999999999999999864   999999999999999999999887      3444433322     15799887


Q ss_pred             E
Q psy14969        672 I  672 (687)
Q Consensus       672 V  672 (687)
                      .
T Consensus       130 c  130 (243)
T COG2227         130 C  130 (243)
T ss_pred             E
Confidence            6

>KOG1663|consensus

Probab=98.34  E-value=2.3e-06  Score=87.07  Aligned_cols=78  Identities=12%  Similarity=0.198  Sum_probs=70.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----------
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----------  663 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----------  663 (687)
                      .+..++++||||+-|||.+..+|.+++++|+|+++|++++..+.+.+.++.++.    .++|++++|.+.          
T Consensus        70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~esLd~l~~~~  145 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALESLDELLADG  145 (237)
T ss_pred             HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhhhHHHHHhcC
Confidence            344789999999999999999999999899999999999999999999999998    899999999864          


Q ss_pred             -CCCccEEEEEec
Q psy14969        664 -QQDASRVNISVE  675 (687)
Q Consensus       664 -daPFDLILVVfA  675 (687)
                       ...||.+++.++
T Consensus       146 ~~~tfDfaFvDad  158 (237)
T KOG1663|consen  146 ESGTFDFAFVDAD  158 (237)
T ss_pred             CCCceeEEEEccc
Confidence             356898888764

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.34  E-value=1.1e-07  Score=79.73  Aligned_cols=70  Identities=16%  Similarity=0.120  Sum_probs=46.0

Q ss_pred             EEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEEEe
Q psy14969        602 LDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNISV  674 (687)
Q Consensus       602 LDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILVVf  674 (687)
                      ||||||+|.++..++... |.++++|+|+|+.|++.|++++......  ...++.+...+...    ..||.|+...
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~   74 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDYDPPESFDLVVASN   74 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhcccccccceehhhh
Confidence            799999999999999887 5789999999999999999999987640  01123333333221    3799998764

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1270|consensus

Probab=98.33  E-value=7.4e-07  Score=92.28  Aligned_cols=71  Identities=21%  Similarity=0.199  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CccCCCcEEEEEcCCC--CCCccEEEE
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA--HLLDEGVVNIMRTLPP--QQDASRVNI  672 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~--~VaSsgRI~LI~GDAe--daPFDLILV  672 (687)
                      |++|||||||+|.++..||++..   .|+|||++++|++.|+.. +....  ......++.+.+.+++  ...||.|++
T Consensus        90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvc  164 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVC  164 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcccccceeee
Confidence            58899999999999999999975   999999999999999999 44433  1112346888877766  355998876

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.32  E-value=5.2e-06  Score=81.67  Aligned_cols=84  Identities=17%  Similarity=0.061  Sum_probs=57.7

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCc---------
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL---------  649 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~V---------  649 (687)
                      +.|.+...+.. +  .+.++.+|||+|||+|..+..||+..-   .|+|+|+|+.+++.|.+   ++++..         
T Consensus        19 p~~~l~~~~~~-l--~~~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~   89 (213)
T TIGR03840        19 VNPLLVKHWPA-L--GLPAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFT   89 (213)
T ss_pred             CCHHHHHHHHh-h--CCCCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHH---HcCCCcceeccccce
Confidence            34445554332 2  235778999999999999999998753   89999999999998644   222210         


Q ss_pred             -cCCCcEEEEEcCCCCC------CccEEE
Q psy14969        650 -LDEGVVNIMRTLPPQQ------DASRVN  671 (687)
Q Consensus       650 -aSsgRI~LI~GDAeda------PFDLIL  671 (687)
                       ....+++++++|....      +||.|+
T Consensus        90 ~~~~~~v~~~~~D~~~~~~~~~~~fD~i~  118 (213)
T TIGR03840        90 RYRAGNIEIFCGDFFALTAADLGPVDAVY  118 (213)
T ss_pred             eeecCceEEEEccCCCCCcccCCCcCEEE
Confidence             1135789999887543      367665

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.31  E-value=1.5e-06  Score=91.05  Aligned_cols=87  Identities=24%  Similarity=0.285  Sum_probs=59.0

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+++++  ...++ .|||+-||+|.+|..||..+.   +|+|||+++.+++.|++|++.+++     .++.|+.+++
T Consensus       185 l~~~~~~~l--~~~~~-~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i-----~n~~f~~~~~  253 (352)
T PF05958_consen  185 LYEQALEWL--DLSKG-DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGI-----DNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHC--TT-TT-EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--S
T ss_pred             HHHHHHHHh--hcCCC-cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCC-----CcceEEEeec
Confidence            445555554  34444 899999999999999998876   899999999999999999999997     5789988765


Q ss_pred             CCC-------------------CccEEEEEecCCCcC
Q psy14969        663 PQQ-------------------DASRVNISVEPQKSG  680 (687)
Q Consensus       663 eda-------------------PFDLILVVfAP~K~g  680 (687)
                      ++.                   .++.-.++++||+.|
T Consensus       254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G  290 (352)
T PF05958_consen  254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAG  290 (352)
T ss_dssp             HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-
T ss_pred             cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCC
Confidence            421                   122334578999987

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.30  E-value=4e-06  Score=90.27  Aligned_cols=74  Identities=9%  Similarity=0.092  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPF  667 (687)
                      ...+..+||||||+|..+..+|+.. |...++|+|+++.+++.|.+++...++     .++.++.+|+.       ...+
T Consensus       120 ~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL-----~NV~~i~~DA~~ll~~~~~~s~  193 (390)
T PRK14121        120 KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL-----KNLLIINYDARLLLELLPSNSV  193 (390)
T ss_pred             CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHhhhhCCCCce
Confidence            4456799999999999999999997 688999999999999999999999886     56899999974       3458


Q ss_pred             cEEEEEe
Q psy14969        668 SRVNISV  674 (687)
Q Consensus       668 DLILVVf  674 (687)
                      |.|.+.+
T Consensus       194 D~I~lnF  200 (390)
T PRK14121        194 EKIFVHF  200 (390)
T ss_pred             eEEEEeC
Confidence            8888776

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.28  E-value=4.4e-06  Score=82.26  Aligned_cols=79  Identities=15%  Similarity=0.078  Sum_probs=57.6

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      +..+++++  ...++.++||+|||+|..|..||+..-   .|+|+|+++.+++.+++..++.++      .|.....|..
T Consensus        19 hs~v~~a~--~~~~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l------~i~~~~~Dl~   87 (192)
T PF03848_consen   19 HSEVLEAV--PLLKPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGL------DIRTRVADLN   87 (192)
T ss_dssp             -HHHHHHC--TTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGC
T ss_pred             cHHHHHHH--hhcCCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCc------eeEEEEecch
Confidence            44455555  344667999999999999999998864   899999999999999998888887      4666666633


Q ss_pred             ----CCCccEEEEE
Q psy14969        664 ----QQDASRVNIS  673 (687)
Q Consensus       664 ----daPFDLILVV  673 (687)
                          ...||+|+.+
T Consensus        88 ~~~~~~~yD~I~st  101 (192)
T PF03848_consen   88 DFDFPEEYDFIVST  101 (192)
T ss_dssp             CBS-TTTEEEEEEE
T ss_pred             hccccCCcCEEEEE
Confidence                2458888653

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00811 spermidine synthase; Provisional

Probab=98.28  E-value=4.4e-06  Score=84.94  Aligned_cols=79  Identities=14%  Similarity=0.082  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL  669 (687)
                      ..+.+||+||||+|+.+..+++.. +..+|++||+++.+++.|++++...+.......++.++.+|+.      ...||+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            457899999999999999888763 2458999999999999999998865432234578999999964      357999


Q ss_pred             EEEEec
Q psy14969        670 VNISVE  675 (687)
Q Consensus       670 ILVVfA  675 (687)
                      |++...
T Consensus       154 Ii~D~~  159 (283)
T PRK00811        154 IIVDST  159 (283)
T ss_pred             EEECCC
Confidence            988753

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=4.8e-06  Score=87.22  Aligned_cols=87  Identities=24%  Similarity=0.285  Sum_probs=64.4

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC--
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP--  662 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA--  662 (687)
                      ..+++.+  ....+.+|||+|||.|++++.+++.. |..+|+-+|++..+++.|++|++.+++    .+. .+..++.  
T Consensus       148 ~lLl~~l--~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~----~~~-~v~~s~~~~  219 (300)
T COG2813         148 RLLLETL--PPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV----ENT-EVWASNLYE  219 (300)
T ss_pred             HHHHHhC--CccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC----Ccc-EEEEecccc
Confidence            4555555  34445599999999999999999997 588999999999999999999999987    221 3333332  


Q ss_pred             -CCCCccEEEEEecCCCcC
Q psy14969        663 -PQQDASRVNISVEPQKSG  680 (687)
Q Consensus       663 -edaPFDLILVVfAP~K~g  680 (687)
                       -...||.| ++.-|.+.|
T Consensus       220 ~v~~kfd~I-isNPPfh~G  237 (300)
T COG2813         220 PVEGKFDLI-ISNPPFHAG  237 (300)
T ss_pred             cccccccEE-EeCCCccCC
Confidence             12368877 455565544

>PRK06922 hypothetical protein; Provisional

Probab=98.27  E-value=3e-06  Score=96.34  Aligned_cols=72  Identities=19%  Similarity=0.330  Sum_probs=58.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------CCc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------QDA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------aPF  667 (687)
                      ..++.+|||||||+|..+..+++.. |.++|+|+|+++.|++.|+++....+.      ++.++.+|+..       .+|
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~------~ie~I~gDa~dLp~~fedeSF  488 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR------SWNVIKGDAINLSSSFEKESV  488 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC------CeEEEEcchHhCccccCCCCE
Confidence            4478899999999999999999876 578999999999999999998766543      56777777533       358


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |+|+..
T Consensus       489 DvVVsn  494 (677)
T PRK06922        489 DTIVYS  494 (677)
T ss_pred             EEEEEc
Confidence            887654

>KOG2915|consensus

Probab=98.24  E-value=4.2e-06  Score=87.46  Aligned_cols=97  Identities=24%  Similarity=0.310  Sum_probs=80.9

Q ss_pred             cccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCcc
Q psy14969        571 MLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL  650 (687)
Q Consensus       571 PIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~Va  650 (687)
                      .+.++..|..+.-.++++..|  ++.||.+|||-|+|+|.++.++++.++|.|+++..|+.....+.|.+.+++.++   
T Consensus        81 ~LphRTQI~Yt~Dia~I~~~L--~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi---  155 (314)
T KOG2915|consen   81 ALPHRTQILYTPDIAMILSML--EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI---  155 (314)
T ss_pred             hccCcceEEecccHHHHHHHh--cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC---
Confidence            344445566666678888888  799999999999999999999999999999999999999999999999999998   


Q ss_pred             CCCcEEEEEcCCCC-------CCccEEEEE
Q psy14969        651 DEGVVNIMRTLPPQ-------QDASRVNIS  673 (687)
Q Consensus       651 SsgRI~LI~GDAed-------aPFDLILVV  673 (687)
                       .+.+++.+-|...       .-+|.|++.
T Consensus       156 -~~~vt~~hrDVc~~GF~~ks~~aDaVFLD  184 (314)
T KOG2915|consen  156 -GDNVTVTHRDVCGSGFLIKSLKADAVFLD  184 (314)
T ss_pred             -CcceEEEEeecccCCccccccccceEEEc
Confidence             7788888776543       345666655

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.24  E-value=5.1e-06  Score=87.21  Aligned_cols=58  Identities=17%  Similarity=0.167  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCccCCCcEEEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-HAHLLDEGVVNIMR  659 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-G~~VaSsgRI~LI~  659 (687)
                      .+.+|||||||+|.+...|+... +..+++|+|+++.+++.|+++++.+ ++    .+++.+..
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~  172 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRL  172 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEE
Confidence            45799999999999998888775 4689999999999999999999999 67    56777754

>TIGR00452 methyltransferase, putative

Probab=98.23  E-value=6.1e-06  Score=86.10  Aligned_cols=74  Identities=16%  Similarity=0.030  Sum_probs=51.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDL  669 (687)
                      ...+|++|||||||+|+++..++... + ..|+|||+++.|+..++..-+..+.    ..++.+..++.+    ...||.
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~~~~~~ie~lp~~~~FD~  191 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLDN----DKRAILEPLGIEQLHELYAFDT  191 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhcc----CCCeEEEECCHHHCCCCCCcCE
Confidence            45678999999999999998888764 2 3799999999998765433222221    235556555433    236898


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       192 V~s~  195 (314)
T TIGR00452       192 VFSM  195 (314)
T ss_pred             EEEc
Confidence            8765

Known examples to date are restricted to the proteobacteria.

>TIGR03438 probable methyltransferase

Probab=98.23  E-value=5.6e-06  Score=84.43  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      .+.++.+|||+|||||..|..|++.+.+..+|+|+|+|++|++.|++++.....    .-++.++.||..
T Consensus        60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~  125 (301)
T TIGR03438        60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFT  125 (301)
T ss_pred             hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEccc
Confidence            356778999999999999999998863246899999999999999999876432    225677778754

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.20  E-value=6.1e-06  Score=88.34  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC-CcEEEEEcCCCC---------C
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE-GVVNIMRTLPPQ---------Q  665 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs-gRI~LI~GDAed---------a  665 (687)
                      .+|.+|||+|||||+++..++.. + ..+|+++|+++.+++.|++|++.+++    . .++.++.+|+..         .
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl----~~~~v~~i~~D~~~~l~~~~~~~~  292 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKL----DLSKAEFVRDDVFKLLRTYRDRGE  292 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCC----CCCcEEEEEccHHHHHHHHHhcCC
Confidence            36889999999999998765533 2 45899999999999999999999987    3 478999998642         3


Q ss_pred             CccEEEEEecCCC
Q psy14969        666 DASRVNISVEPQK  678 (687)
Q Consensus       666 PFDLILVVfAP~K  678 (687)
                      .||+|+  ..|+.
T Consensus       293 ~fDlVi--lDPP~  303 (396)
T PRK15128        293 KFDVIV--MDPPK  303 (396)
T ss_pred             CCCEEE--ECCCC
Confidence            699886  44553

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=4.8e-06  Score=90.33  Aligned_cols=89  Identities=24%  Similarity=0.274  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .|...+++++  ...++++|||+=||.|.++..||+.+.   +|+|+|+++++++.|++|++.+++     .++.|+.++
T Consensus       280 kl~~~a~~~~--~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i-----~N~~f~~~~  349 (432)
T COG2265         280 KLYETALEWL--ELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGI-----DNVEFIAGD  349 (432)
T ss_pred             HHHHHHHHHH--hhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEeCC
Confidence            3555555555  456778999999999999999997775   999999999999999999999998     459999999


Q ss_pred             CCC--------CCccEEEEEecCCCcCcc
Q psy14969        662 PPQ--------QDASRVNISVEPQKSGEI  682 (687)
Q Consensus       662 Aed--------aPFDLILVVfAP~K~gEl  682 (687)
                      ++.        ..+|.  ++++|++.|--
T Consensus       350 ae~~~~~~~~~~~~d~--VvvDPPR~G~~  376 (432)
T COG2265         350 AEEFTPAWWEGYKPDV--VVVDPPRAGAD  376 (432)
T ss_pred             HHHHhhhccccCCCCE--EEECCCCCCCC
Confidence            763        23454  56789998854

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.19  E-value=9.8e-06  Score=77.83  Aligned_cols=71  Identities=18%  Similarity=0.193  Sum_probs=55.7

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPF  667 (687)
                      ...++.+|||||||+|.++..+++..   .+|+++|+++.+++.|++++...+.      .+.+..++..      ...|
T Consensus        45 ~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~f  115 (233)
T PRK05134         45 GGLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGL------KIDYRQTTAEELAAEHPGQF  115 (233)
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCC------ceEEEecCHHHhhhhcCCCc
Confidence            35578899999999999999988764   4899999999999999999887664      4556555532      2468


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |+|+..
T Consensus       116 D~Ii~~  121 (233)
T PRK05134        116 DVVTCM  121 (233)
T ss_pred             cEEEEh
Confidence            988663

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.17  E-value=5e-06  Score=94.23  Aligned_cols=71  Identities=10%  Similarity=0.081  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC-CcEEEEEcCCC------CCCccE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE-GVVNIMRTLPP------QQDASR  669 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs-gRI~LI~GDAe------daPFDL  669 (687)
                      +|.+|||+|||||.++..+++..  ..+|++||+++.+++.|++|++.+++    . .++.++.+|+.      ..+||+
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~----~~~~v~~i~~D~~~~l~~~~~~fDl  611 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGL----SGRQHRLIQADCLAWLKEAREQFDL  611 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCC----CccceEEEEccHHHHHHHcCCCcCE
Confidence            68899999999999999999753  24799999999999999999999987    3 57999999963      247998


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |++.
T Consensus       612 IilD  615 (702)
T PRK11783        612 IFID  615 (702)
T ss_pred             EEEC
Confidence            7665

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.17  E-value=4.9e-06  Score=81.13  Aligned_cols=70  Identities=23%  Similarity=0.306  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----------
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------  664 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------  664 (687)
                      ++++.+|||||||||..+..+++.+++.++|+|||+++ |          ..+     ..+.++++|...          
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-----~~v~~i~~D~~~~~~~~~i~~~  112 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-----VGVDFLQGDFRDELVLKALLER  112 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-----CCcEEEecCCCChHHHHHHHHH
Confidence            57889999999999999999999987778999999998 1          111     246777777654          


Q ss_pred             ---CCccEEEEEecCCCcC
Q psy14969        665 ---QDASRVNISVEPQKSG  680 (687)
Q Consensus       665 ---aPFDLILVVfAP~K~g  680 (687)
                         ..+|+|+...+|.-.+
T Consensus       113 ~~~~~~D~V~S~~~~~~~g  131 (209)
T PRK11188        113 VGDSKVQVVMSDMAPNMSG  131 (209)
T ss_pred             hCCCCCCEEecCCCCccCC
Confidence               2589998877665443

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=8.4e-06  Score=83.81  Aligned_cols=79  Identities=23%  Similarity=0.285  Sum_probs=68.0

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..+.+...+++.+  .+.+++.|||||+|.|.+|..|++.+.   +|++||+++.+++..++....       .+++.+
T Consensus        13 L~d~~v~~kIv~~a--~~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~v   80 (259)
T COG0030          13 LIDKNVIDKIVEAA--NISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLTV   80 (259)
T ss_pred             ccCHHHHHHHHHhc--CCCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceEE
Confidence            34566788888887  688899999999999999999999986   899999999999998887662       368999


Q ss_pred             EEcCCCCCCcc
Q psy14969        658 MRTLPPQQDAS  668 (687)
Q Consensus       658 I~GDAedaPFD  668 (687)
                      +.||+-..++.
T Consensus        81 i~~DaLk~d~~   91 (259)
T COG0030          81 INGDALKFDFP   91 (259)
T ss_pred             EeCchhcCcch
Confidence            99999877766

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.15  E-value=6.7e-06  Score=85.54  Aligned_cols=85  Identities=13%  Similarity=0.272  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      |-|..-+++.+  .+.++..+||.+||.|..|..+++.+++.++|+|+|.++.|++.|++++..  .     .++.++++
T Consensus         5 pVll~Evl~~L--~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~-----~ri~~i~~   75 (296)
T PRK00050          5 PVLLDEVVDAL--AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F-----GRFTLVHG   75 (296)
T ss_pred             cccHHHHHHhh--CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C-----CcEEEEeC
Confidence            55777788887  578889999999999999999999986678999999999999999998765  2     47888887


Q ss_pred             CCCC---------CCccEEEEEe
Q psy14969        661 LPPQ---------QDASRVNISV  674 (687)
Q Consensus       661 DAed---------aPFDLILVVf  674 (687)
                      +-..         .++|.|+...
T Consensus        76 ~f~~l~~~l~~~~~~vDgIl~DL   98 (296)
T PRK00050         76 NFSNLKEVLAEGLGKVDGILLDL   98 (296)
T ss_pred             CHHHHHHHHHcCCCccCEEEECC
Confidence            7431         1577776653

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.13  E-value=1.1e-05  Score=85.14  Aligned_cols=69  Identities=22%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----CccEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DASRV  670 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFDLI  670 (687)
                      .++.+|||||||+|.++..+++..+ .++|+++|+++.|++.|+++...        .++.++.+|+...     .||+|
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV  182 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY  182 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence            4678999999999999999998873 57999999999999999987542        2466788876543     47877


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      +..
T Consensus       183 Is~  185 (340)
T PLN02490        183 VSA  185 (340)
T ss_pred             EEc
Confidence            664

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.10  E-value=7.3e-06  Score=77.18  Aligned_cols=41  Identities=34%  Similarity=0.443  Sum_probs=36.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHH
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYL  634 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeA  634 (687)
                      .+.+|.+|||||||||.++..+++...+.++|+|+|+++.+
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~   69 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK   69 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence            56789999999999999999999887556799999999864

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.07  E-value=1.3e-05  Score=85.51  Aligned_cols=77  Identities=18%  Similarity=0.147  Sum_probs=56.5

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--  663 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--  663 (687)
                      .++..+  ...++.+|||||||+|.++..+++...   +|+|+|+++.|++.|++..   +.    ..++.++.+++.  
T Consensus        28 ~il~~l--~~~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~---~~----~~~i~~~~~d~~~~   95 (475)
T PLN02336         28 EILSLL--PPYEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESIN---GH----YKNVKFMCADVTSP   95 (475)
T ss_pred             HHHhhc--CccCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHh---cc----CCceEEEEeccccc
Confidence            444444  345678999999999999999998754   8999999999998876532   11    236778777763  


Q ss_pred             -----CCCccEEEEEe
Q psy14969        664 -----QQDASRVNISV  674 (687)
Q Consensus       664 -----daPFDLILVVf  674 (687)
                           ...||+|+...
T Consensus        96 ~~~~~~~~fD~I~~~~  111 (475)
T PLN02336         96 DLNISDGSVDLIFSNW  111 (475)
T ss_pred             ccCCCCCCEEEEehhh
Confidence                 23588887654

>PHA03412 putative methyltransferase; Provisional

Probab=98.07  E-value=1.4e-05  Score=81.68  Aligned_cols=66  Identities=9%  Similarity=0.080  Sum_probs=52.2

Q ss_pred             CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHHHH
Q psy14969        574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR--PHGKVYSLDHMEYLVNFSKENIR  643 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG--P~GrVtGIDISpeAVE~ARKNLK  643 (687)
                      .|+..+.+.++..+...    ...+.+|||+|||||.++..+++.+.  +...|+++|+++.+++.|++++.
T Consensus        30 ~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~   97 (241)
T PHA03412         30 LGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP   97 (241)
T ss_pred             CCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence            46777777777766422    22467999999999999999998642  35699999999999999998864

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.07  E-value=1.2e-05  Score=80.46  Aligned_cols=66  Identities=15%  Similarity=0.149  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEEEE
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVNIS  673 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLILVV  673 (687)
                      -.++||+|||.|.+|..||....   +++++|+++.+++.|++++...       .+|.++.++.+    ...||+|++.
T Consensus        44 y~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~-------~~V~~~~~dvp~~~P~~~FDLIV~S  113 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGL-------PHVEWIQADVPEFWPEGRFDLIVLS  113 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---SS-EEEEEEE
T ss_pred             cceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCC-------CCeEEEECcCCCCCCCCCeeEEEEe
Confidence            36899999999999999999986   8999999999999999998764       36889888854    4569999875

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.06  E-value=2.6e-05  Score=73.99  Aligned_cols=85  Identities=20%  Similarity=0.134  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHhhhc--CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        581 PSFIASSLEPALLK--LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       581 P~VvAlLLElLked--LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      +...+.+.+.+...  ...+.+|||||||+|+++..+++...   .|+++|+++.+++.|++++...+.     .++.+.
T Consensus        27 ~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~   98 (224)
T TIGR01983        27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPL-----LKIEYR   98 (224)
T ss_pred             HHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCC-----CceEEE
Confidence            33445555555211  23478999999999999999887643   799999999999999999887764     246676


Q ss_pred             EcCCC------CCCccEEEEE
Q psy14969        659 RTLPP------QQDASRVNIS  673 (687)
Q Consensus       659 ~GDAe------daPFDLILVV  673 (687)
                      .++..      ..+||+|+..
T Consensus        99 ~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        99 CTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             eCCHHHhhcCCCCCccEEEeh
Confidence            66642      2468887653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.05  E-value=4.2e-05  Score=75.60  Aligned_cols=64  Identities=19%  Similarity=0.060  Sum_probs=49.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC----------ccCCCcEEEEEcCCCC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH----------LLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~----------VaSsgRI~LI~GDAed  664 (687)
                      +.++.+|||+|||+|..+..||+..   ..|+|||+++.+++.|..   +.++.          .....+|.+.++|...
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~  108 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFA  108 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccC
Confidence            4567899999999999999999864   489999999999998743   22321          1224678888888654

>PHA03411 putative methyltransferase; Provisional

Probab=98.04  E-value=2e-05  Score=81.91  Aligned_cols=84  Identities=11%  Similarity=0.092  Sum_probs=60.7

Q ss_pred             CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCC
Q psy14969        574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG  653 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsg  653 (687)
                      .|+..+.+.+...++  +  ....+.+|||+|||+|.++..+++..+ ..+|+|+|+++.|++.|++++.          
T Consensus        45 ~G~FfTP~~i~~~f~--~--~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~----------  109 (279)
T PHA03411         45 SGAFFTPEGLAWDFT--I--DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLP----------  109 (279)
T ss_pred             ceeEcCCHHHHHHHH--h--ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCc----------
Confidence            577766666654432  2  234567999999999999998887752 4599999999999999988642          


Q ss_pred             cEEEEEcCCCC----CCccEEEE
Q psy14969        654 VVNIMRTLPPQ----QDASRVNI  672 (687)
Q Consensus       654 RI~LI~GDAed----aPFDLILV  672 (687)
                      ++.++.+|...    ..||+|+.
T Consensus       110 ~v~~v~~D~~e~~~~~kFDlIIs  132 (279)
T PHA03411        110 EAEWITSDVFEFESNEKFDVVIS  132 (279)
T ss_pred             CCEEEECchhhhcccCCCcEEEE
Confidence            34556666543    34887766

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.03  E-value=1.6e-05  Score=75.21  Aligned_cols=44  Identities=27%  Similarity=0.302  Sum_probs=37.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      +.++.+|||||||+|.++..+++..+  ..++|+|+++++++.|++
T Consensus        11 i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~   54 (194)
T TIGR02081        11 IPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA   54 (194)
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH
Confidence            45788999999999999999886643  478999999999998864

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.03  E-value=5.6e-06  Score=84.53  Aligned_cols=70  Identities=16%  Similarity=0.242  Sum_probs=55.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC----CCCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP----PQQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA----edaPFDL  669 (687)
                      .+.+..+|.|+|||+|..|..|++.. |.+.|+|||.|++|++.|+.++....          |..+|.    +..++|+
T Consensus        27 p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~----------f~~aDl~~w~p~~~~dl   95 (257)
T COG4106          27 PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDAT----------FEEADLRTWKPEQPTDL   95 (257)
T ss_pred             CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCc----------eecccHhhcCCCCccch
Confidence            35577899999999999999999998 68999999999999999988765544          455553    3456776


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      ++..+
T Consensus        96 lfaNA  100 (257)
T COG4106          96 LFANA  100 (257)
T ss_pred             hhhhh
Confidence            65543

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.02  E-value=6.3e-05  Score=72.67  Aligned_cols=60  Identities=18%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      .+.+|||++||||.++..++....  ..|++||.++.+++.+++|++..++    ..++.++.+|+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~  108 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSA  108 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhH
Confidence            688999999999999999988753  3899999999999999999999987    45788888886

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02366 spermidine synthase

Probab=98.02  E-value=4.6e-05  Score=79.36  Aligned_cols=79  Identities=14%  Similarity=0.090  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPF  667 (687)
                      ..++.+||+||||.|.++..+++.- +..+|+.+|+++.+++.|++.+...+. .....|++++.+|+.       ...|
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~~~~~~~y  166 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLKNAPEGTY  166 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHhhccCCCC
Confidence            3567899999999999999998762 346899999999999999999876532 234569999999962       3469


Q ss_pred             cEEEEEec
Q psy14969        668 SRVNISVE  675 (687)
Q Consensus       668 DLILVVfA  675 (687)
                      |+|++...
T Consensus       167 DvIi~D~~  174 (308)
T PLN02366        167 DAIIVDSS  174 (308)
T ss_pred             CEEEEcCC
Confidence            99998753

>TIGR00417 speE spermidine synthase

Probab=97.97  E-value=5.1e-05  Score=76.33  Aligned_cols=77  Identities=16%  Similarity=0.071  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL  669 (687)
                      ..+.+||+||||+|.++..+++.. +..+|+++|+++.+++.|++++...+. .....+++++.+|+.      ..+||+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~~l~~~~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFKFLADTENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHHHHHhCCCCccE
Confidence            345699999999999998887764 345899999999999999998876541 233467888888863      357999


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |++..
T Consensus       149 Ii~D~  153 (270)
T TIGR00417       149 IIVDS  153 (270)
T ss_pred             EEEeC
Confidence            98864

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1541|consensus

Probab=97.95  E-value=1.4e-05  Score=82.05  Aligned_cols=58  Identities=21%  Similarity=0.258  Sum_probs=47.0

Q ss_pred             CcHHHHHHHHHHhhhcCCC--CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        579 NSPSFIASSLEPALLKLKP--GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkp--G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      ....|..+.+++|  .++.  +.-|||||||||..+..|....   -..+|+|||+.|++.|.++
T Consensus        32 IQ~em~eRaLELL--alp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~   91 (270)
T KOG1541|consen   32 IQAEMAERALELL--ALPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVER   91 (270)
T ss_pred             ehHHHHHHHHHHh--hCCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHh
Confidence            3456778888887  4555  6789999999999998887553   3789999999999999974

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.95  E-value=5.4e-05  Score=83.15  Aligned_cols=78  Identities=13%  Similarity=0.153  Sum_probs=66.8

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPF  667 (687)
                      .+++|.+|||+++|.|.-|..+|.+++..|.|++.|+++.-++..++|+++.|+     .++.+...|+..      ..|
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-----~nv~v~~~D~~~~~~~~~~~f  184 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-----SNVALTHFDGRVFGAALPETF  184 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCchhhhhhhchhhc
Confidence            468999999999999999999999987778999999999999999999999997     456777777653      248


Q ss_pred             cEEEEEecCC
Q psy14969        668 SRVNISVEPQ  677 (687)
Q Consensus       668 DLILVVfAP~  677 (687)
                      |.|++.+ ||
T Consensus       185 D~ILvDa-PC  193 (470)
T PRK11933        185 DAILLDA-PC  193 (470)
T ss_pred             CeEEEcC-CC
Confidence            9997765 55

>KOG2187|consensus

Probab=97.94  E-value=1.6e-05  Score=88.35  Aligned_cols=91  Identities=20%  Similarity=0.237  Sum_probs=74.2

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      ++.+...+-+++  .+..+..+|||.||||.++.++|+.+.   +|+|||+++++++.|++|.+.+|+     .+.+|+.
T Consensus       368 aevLys~i~e~~--~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~Ngi-----sNa~Fi~  437 (534)
T KOG2187|consen  368 AEVLYSTIGEWA--GLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGI-----SNATFIV  437 (534)
T ss_pred             HHHHHHHHHHHh--CCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCc-----cceeeee
Confidence            445566666666  688889999999999999999998886   899999999999999999999998     6789999


Q ss_pred             cCCCCC---------CccEEEEEecCCCcC
Q psy14969        660 TLPPQQ---------DASRVNISVEPQKSG  680 (687)
Q Consensus       660 GDAeda---------PFDLILVVfAP~K~g  680 (687)
                      |.|++.         +-.-++++.+|++.|
T Consensus       438 gqaE~~~~sl~~~~~~~~~~v~iiDPpR~G  467 (534)
T KOG2187|consen  438 GQAEDLFPSLLTPCCDSETLVAIIDPPRKG  467 (534)
T ss_pred             cchhhccchhcccCCCCCceEEEECCCccc
Confidence            966531         122356778888876

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.92  E-value=5e-05  Score=59.31  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=49.3

Q ss_pred             eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCccEEEEE
Q psy14969        600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDASRVNIS  673 (687)
Q Consensus       600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPFDLILVV  673 (687)
                      ++||+|||+|..+..+++ . +..+++++|+++.+++.+++......     ..++.++.++..+      ..+|+|+..
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~i~~~   73 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPPEADESFDVIISD   73 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhccccCCceEEEEEc
Confidence            489999999999999987 2 35699999999999999986443332     2467777766443      336766554

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG3420|consensus

Probab=97.92  E-value=1.7e-05  Score=77.37  Aligned_cols=85  Identities=16%  Similarity=0.186  Sum_probs=66.4

Q ss_pred             ccCCcccCcHHHHHHHHHHhhhcC--CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCc
Q psy14969        572 LENCSYLNSPSFIASSLEPALLKL--KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL  649 (687)
Q Consensus       572 IG~GqTISaP~VvAlLLElLkedL--kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~V  649 (687)
                      ++-.++..+|++.+.|+..+.+..  -.|++++|+|||+|.++...+-. + .-.|+|+|+++++++.+.+|.....+  
T Consensus        21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~-~e~vlGfDIdpeALEIf~rNaeEfEv--   96 (185)
T KOG3420|consen   21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-K-NESVLGFDIDPEALEIFTRNAEEFEV--   96 (185)
T ss_pred             hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-C-CceEEeeecCHHHHHHHhhchHHhhh--
Confidence            344467788999999988775422  36899999999999999665533 2 34899999999999999999999877  


Q ss_pred             cCCCcEEEEEcCCCC
Q psy14969        650 LDEGVVNIMRTLPPQ  664 (687)
Q Consensus       650 aSsgRI~LI~GDAed  664 (687)
                          .+++++.+-.+
T Consensus        97 ----qidlLqcdild  107 (185)
T KOG3420|consen   97 ----QIDLLQCDILD  107 (185)
T ss_pred             ----hhheeeeeccc
Confidence                55777777543

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.87  E-value=3.6e-05  Score=76.57  Aligned_cols=65  Identities=25%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-------CCCCc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-------PQQDA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-------edaPF  667 (687)
                      +.+|.+|||+|||.|.+...|.+.-  +.+++|||++++.+..+.++    |+        .++++|.       ++..|
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r----Gv--------~Viq~Dld~gL~~f~d~sF   76 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR----GV--------SVIQGDLDEGLADFPDQSF   76 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc----CC--------CEEECCHHHhHhhCCCCCc
Confidence            6789999999999999998888763  56899999999998877664    54        4566654       34569


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |.|+++
T Consensus        77 D~VIls   82 (193)
T PF07021_consen   77 DYVILS   82 (193)
T ss_pred             cEEehH
Confidence            988764

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.86  E-value=6.8e-05  Score=74.16  Aligned_cols=76  Identities=28%  Similarity=0.369  Sum_probs=57.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDL  669 (687)
                      ..++|..|||+.||-|+++..+|+.. +...|+++|++|.+++..+++++.+++    .+++..+.+|+..    ..+|.
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~~~~~dr  172 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLPEGKFDR  172 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG---TT-EEE
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcCccccCE
Confidence            36789999999999999999999854 356899999999999999999999998    7889999999764    34676


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus       173 vim~l  177 (200)
T PF02475_consen  173 VIMNL  177 (200)
T ss_dssp             EEE--
T ss_pred             EEECC
Confidence            66544

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.86  E-value=8.8e-05  Score=71.03  Aligned_cols=82  Identities=23%  Similarity=0.218  Sum_probs=62.1

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcE---------EEEEeCCHHHHHHHHHHHHHcCCC
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGK---------VYSLDHMEYLVNFSKENIRKNHAH  648 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~Gr---------VtGIDISpeAVE~ARKNLKkaG~~  648 (687)
                      -..|.+.+.|+.+.  ..+++..|||--||||.+.+..|.... ...         ++|.|+++.+++.|+.|++.+++ 
T Consensus        11 ~L~~~lA~~ll~la--~~~~~~~vlDP~CGsGtiliEaa~~~~-~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-   86 (179)
T PF01170_consen   11 PLRPTLAAALLNLA--GWRPGDVVLDPFCGSGTILIEAALMGA-NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-   86 (179)
T ss_dssp             SS-HHHHHHHHHHT--T--TTS-EEETT-TTSHHHHHHHHHHT-TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--
T ss_pred             CCCHHHHHHHHHHh--CCCCCCEEeecCCCCCHHHHHHHHHhh-CcccccccccccEEecCCCHHHHHHHHHHHHhccc-
Confidence            35677888888776  688899999999999999988777764 333         88999999999999999999998 


Q ss_pred             ccCCCcEEEEEcCCCCCC
Q psy14969        649 LLDEGVVNIMRTLPPQQD  666 (687)
Q Consensus       649 VaSsgRI~LI~GDAedaP  666 (687)
                         .+.+.+..+|+...+
T Consensus        87 ---~~~i~~~~~D~~~l~  101 (179)
T PF01170_consen   87 ---EDYIDFIQWDARELP  101 (179)
T ss_dssp             ---CGGEEEEE--GGGGG
T ss_pred             ---CCceEEEecchhhcc
Confidence               678999998877655

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.81  E-value=5.2e-05  Score=73.32  Aligned_cols=56  Identities=18%  Similarity=0.119  Sum_probs=48.7

Q ss_pred             eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      .|+|+.||.|..|+.+|+...   +|++||+++..++.|+.|++..|+    .+++.++.||.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~   57 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDF   57 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-H
T ss_pred             EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCH
Confidence            699999999999999999975   899999999999999999999997    78999999994

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.80  E-value=8.5e-05  Score=74.45  Aligned_cols=79  Identities=23%  Similarity=0.293  Sum_probs=66.9

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      .+..+.+...+++.+  .+.++..|||||+|+|.+|..|++...   +|+++|+++.+++..++++..       ..++.
T Consensus        12 FL~~~~~~~~Iv~~~--~~~~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~-------~~~~~   79 (262)
T PF00398_consen   12 FLVDPNIADKIVDAL--DLSEGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFAS-------NPNVE   79 (262)
T ss_dssp             EEEHHHHHHHHHHHH--TCGTTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTT-------CSSEE
T ss_pred             eeCCHHHHHHHHHhc--CCCCCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhh-------cccce
Confidence            356788999999988  677899999999999999999998874   999999999999988887652       45899


Q ss_pred             EEEcCCCCCCc
Q psy14969        657 IMRTLPPQQDA  667 (687)
Q Consensus       657 LI~GDAedaPF  667 (687)
                      ++.+|+...+.
T Consensus        80 vi~~D~l~~~~   90 (262)
T PF00398_consen   80 VINGDFLKWDL   90 (262)
T ss_dssp             EEES-TTTSCG
T ss_pred             eeecchhcccc
Confidence            99999887654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.79  E-value=8.8e-05  Score=65.80  Aligned_cols=47  Identities=23%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      .|||||||.|+++..+++.. +.++|+++|.++.+++.++++++.+++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~   47 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL   47 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence            48999999999999999886 567999999999999999999998765

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.78  E-value=9e-05  Score=65.45  Aligned_cols=40  Identities=33%  Similarity=0.449  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF  637 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~  637 (687)
                      ..++.+|||||||+|.++..|++...   +|+|+|+++.+++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK   59 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh
Confidence            56889999999999999999977642   99999999999988

...

>PRK01581 speE spermidine synthase; Validated

Probab=97.78  E-value=0.00011  Score=79.10  Aligned_cols=79  Identities=14%  Similarity=0.055  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH--HHHcCCCccCCCcEEEEEcCCC------CCC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN--IRKNHAHLLDEGVVNIMRTLPP------QQD  666 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN--LKkaG~~VaSsgRI~LI~GDAe------daP  666 (687)
                      ...+.+||+||||+|+.+..+.+.. +..+|++||+++++++.|++.  +...+-......++.++.+|+.      ...
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~  226 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL  226 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence            3456799999999999888777653 356999999999999999962  2211111123578999999865      346


Q ss_pred             ccEEEEEe
Q psy14969        667 ASRVNISV  674 (687)
Q Consensus       667 FDLILVVf  674 (687)
                      ||+|++.+
T Consensus       227 YDVIIvDl  234 (374)
T PRK01581        227 YDVIIIDF  234 (374)
T ss_pred             ccEEEEcC
Confidence            99999885

>PRK03612 spermidine synthase; Provisional

Probab=97.76  E-value=0.00012  Score=80.73  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH--HHHcCCCccCCCcEEEEEcCCCC------CC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN--IRKNHAHLLDEGVVNIMRTLPPQ------QD  666 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN--LKkaG~~VaSsgRI~LI~GDAed------aP  666 (687)
                      .+++++|||||||+|..+..+++. ++..+|+++|+++++++.|+++  +...+.......+++++.+|+..      ..
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~  373 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK  373 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence            356789999999999999888875 2236999999999999999983  33322112335689999998643      57


Q ss_pred             ccEEEEEe
Q psy14969        667 ASRVNISV  674 (687)
Q Consensus       667 FDLILVVf  674 (687)
                      ||+|++..
T Consensus       374 fDvIi~D~  381 (521)
T PRK03612        374 FDVIIVDL  381 (521)
T ss_pred             CCEEEEeC
Confidence            99998875

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.74  E-value=0.00012  Score=67.04  Aligned_cols=64  Identities=28%  Similarity=0.421  Sum_probs=50.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLV---GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .+...|+|+|||-||++..|+..+   .+..+|+|||.++.+++.|.++.++.+...  ..++.+..+.
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~   90 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDL--EKRLSFIQGD   90 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchh--hccchhhccc
Confidence            567899999999999999999833   246799999999999999999999887210  2345555554

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.73  E-value=0.00015  Score=77.53  Aligned_cols=74  Identities=22%  Similarity=0.174  Sum_probs=59.6

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEE
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNI  672 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILV  672 (687)
                      +.+|||++||+|..++.+|...+ ...|+++|+++.+++.+++|++.+++     ..+.+..+|+.     ...||+|++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL-----ENEKVFNKDANALLHEERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-----CceEEEhhhHHHHHhhcCCCCEEEE
Confidence            46899999999999999998764 45899999999999999999999987     24567777754     245887766


Q ss_pred             EecCCCc
Q psy14969        673 SVEPQKS  679 (687)
Q Consensus       673 VfAP~K~  679 (687)
                        +|+..
T Consensus       132 --DP~Gs  136 (382)
T PRK04338        132 --DPFGS  136 (382)
T ss_pred             --CCCCC
Confidence              56533

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.72  E-value=0.00021  Score=72.09  Aligned_cols=88  Identities=10%  Similarity=-0.123  Sum_probs=61.4

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH-------cCCCccC
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK-------NHAHLLD  651 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk-------aG~~VaS  651 (687)
                      ..|.+.......   .+.++.+||+.|||.|+.+..||...-   +|+|+|+|+.+++.+.+....       .......
T Consensus        28 pnp~L~~~~~~l---~~~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~  101 (226)
T PRK13256         28 PNEFLVKHFSKL---NINDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK  101 (226)
T ss_pred             CCHHHHHHHHhc---CCCCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence            455555555443   345678999999999999999998854   899999999999998663210       0111223


Q ss_pred             CCcEEEEEcCCCCC--------CccEEEE
Q psy14969        652 EGVVNIMRTLPPQQ--------DASRVNI  672 (687)
Q Consensus       652 sgRI~LI~GDAeda--------PFDLILV  672 (687)
                      ..++++.+||.-+.        +||.|.-
T Consensus       102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyD  130 (226)
T PRK13256        102 GDDIEIYVADIFNLPKIANNLPVFDIWYD  130 (226)
T ss_pred             cCceEEEEccCcCCCccccccCCcCeeee
Confidence            45789999986543        4777644

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.71  E-value=0.00021  Score=69.62  Aligned_cols=70  Identities=17%  Similarity=0.185  Sum_probs=59.8

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------CCccEE
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------QDASRV  670 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------aPFDLI  670 (687)
                      ..+||||||.|..++.+|+.- |+..++|||+....+..|.+++...++     .++.++.+++..        ..+|.|
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l-----~Nv~~~~~da~~~l~~~~~~~~v~~i   92 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGL-----KNVRFLRGDARELLRRLFPPGSVDRI   92 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTT-----SSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcc-----cceEEEEccHHHHHhhcccCCchheE
Confidence            389999999999999999987 688999999999999999999999987     689999999764        567888


Q ss_pred             EEEe
Q psy14969        671 NISV  674 (687)
Q Consensus       671 LVVf  674 (687)
                      .+.|
T Consensus        93 ~i~F   96 (195)
T PF02390_consen   93 YINF   96 (195)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            8876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.66  E-value=7.4e-05  Score=75.48  Aligned_cols=47  Identities=15%  Similarity=0.097  Sum_probs=37.0

Q ss_pred             CCCCeEEEEcCCccH----HHHHHHHhcCC----CcEEEEEeCCHHHHHHHHHHH
Q psy14969        596 KPGDTVLDVGTGSGY----TAACLGYMVRP----HGKVYSLDHMEYLVNFSKENI  642 (687)
Q Consensus       596 kpG~RVLDIGCGTGY----LTAaLArLVGP----~GrVtGIDISpeAVE~ARKNL  642 (687)
                      .++.+|||+|||||.    ++..+++..++    ..+|+|+|+++.|++.|++.+
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            345799999999996    45556665432    468999999999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG1499|consensus

Probab=97.63  E-value=0.00015  Score=77.50  Aligned_cols=63  Identities=25%  Similarity=0.414  Sum_probs=54.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      +-.++.|||||||||.++...|+++.  .+|+|||-+.-+ +.|.+.+..+++    ++.|+++.|..++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~----~~ii~vi~gkvEd  120 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGL----EDVITVIKGKVED  120 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCc----cceEEEeecceEE
Confidence            44789999999999999999998864  599999999555 999999999998    7789999988764

>PRK04148 hypothetical protein; Provisional

Probab=97.62  E-value=0.00044  Score=65.38  Aligned_cols=43  Identities=21%  Similarity=0.143  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcCCccH-HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        596 KPGDTVLDVGTGSGY-TAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       596 kpG~RVLDIGCGTGY-LTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      ..+.+|||||||+|. .+..|+++.   ..|+|+|+++.+++.|+++
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~   58 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL   58 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh
Confidence            356799999999997 777888664   3999999999999988775

>KOG3191|consensus

Probab=97.62  E-value=0.00045  Score=69.36  Aligned_cols=79  Identities=20%  Similarity=0.300  Sum_probs=60.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEEEE
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVNIS  673 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLILVV  673 (687)
                      ..-+||||||||+.+..|++..+|.....+.|++|.+++...+.++.++.      +++.+..|..    ....|+++..
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~~l~~~~VDvLvfN  117 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLSGLRNESVDVLVFN  117 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHhhhccCCccEEEEC
Confidence            67899999999999999999998888999999999999999999988876      4555554421    2445655443


Q ss_pred             --ecCCCcCcc
Q psy14969        674 --VEPQKSGEI  682 (687)
Q Consensus       674 --fAP~K~gEl  682 (687)
                        |-|--.+|+
T Consensus       118 PPYVpt~~~~i  128 (209)
T KOG3191|consen  118 PPYVPTSDEEI  128 (209)
T ss_pred             CCcCcCCcccc
Confidence              444444444

>KOG1271|consensus

Probab=97.61  E-value=0.0002  Score=72.14  Aligned_cols=62  Identities=21%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      .+.+|||+|||.|.+..-|++..- .+.++|+|+++.+++.|+...++.++    .+.|.|.+.|..
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~----~n~I~f~q~DI~  128 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGF----SNEIRFQQLDIT  128 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCC----CcceeEEEeecc
Confidence            344999999999999999988753 45799999999999999998888888    555777766643

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.56  E-value=0.00018  Score=71.53  Aligned_cols=87  Identities=20%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH-cCC------CccC
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK-NHA------HLLD  651 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk-aG~------~VaS  651 (687)
                      ..|.+...+-. +  ...++.+||..|||.|+-...||...   .+|+|+|+++.+++.|.+.... ...      ....
T Consensus        22 ~~p~L~~~~~~-l--~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~   95 (218)
T PF05724_consen   22 PNPALVEYLDS-L--ALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ   95 (218)
T ss_dssp             STHHHHHHHHH-H--TTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred             CCHHHHHHHHh-c--CCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence            45666666555 3  46778899999999999999999874   3999999999999998543221 111      1234


Q ss_pred             CCcEEEEEcCCCCC------CccEEE
Q psy14969        652 EGVVNIMRTLPPQQ------DASRVN  671 (687)
Q Consensus       652 sgRI~LI~GDAeda------PFDLIL  671 (687)
                      .++|.+.+||--..      +||+|.
T Consensus        96 ~~~i~~~~gDfF~l~~~~~g~fD~iy  121 (218)
T PF05724_consen   96 AGRITIYCGDFFELPPEDVGKFDLIY  121 (218)
T ss_dssp             TSSEEEEES-TTTGGGSCHHSEEEEE
T ss_pred             CCceEEEEcccccCChhhcCCceEEE
Confidence            67899999996542      467664

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1500|consensus

Probab=97.55  E-value=0.00023  Score=76.90  Aligned_cols=76  Identities=20%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--CCccEEEEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--QDASRVNIS  673 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--aPFDLILVV  673 (687)
                      -.++.|||||||+|.++...|++..  .+|++||.+ +|.++|++-++.+.+    .+||.++.|..++  +|-.+-+++
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~----~~rItVI~GKiEdieLPEk~DviI  248 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNL----ADRITVIPGKIEDIELPEKVDVII  248 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCc----cceEEEccCccccccCchhccEEE
Confidence            3678999999999999999888764  599999998 799999999999887    8899999999875  343333344


Q ss_pred             ecCCC
Q psy14969        674 VEPQK  678 (687)
Q Consensus       674 fAP~K  678 (687)
                      -+|+.
T Consensus       249 SEPMG  253 (517)
T KOG1500|consen  249 SEPMG  253 (517)
T ss_pred             eccch
Confidence            45553

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.52  E-value=0.00039  Score=76.06  Aligned_cols=71  Identities=18%  Similarity=0.143  Sum_probs=54.9

Q ss_pred             CCeEEEEcCCccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC----ccEE
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD----ASRV  670 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLV---GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP----FDLI  670 (687)
                      +..|||||||+|-++...++++   +...+|+|||.++.++...+++++..++    .++|+++.|+.++..    .|+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v~lpekvDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREVELPEKVDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTSCHSS-EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCCCCCCceeEE
Confidence            4689999999999987776653   1235999999999999888888888998    889999999988533    5655


Q ss_pred             EE
Q psy14969        671 NI  672 (687)
Q Consensus       671 LV  672 (687)
                      +.
T Consensus       263 VS  264 (448)
T PF05185_consen  263 VS  264 (448)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.46  E-value=0.00082  Score=63.90  Aligned_cols=75  Identities=21%  Similarity=0.276  Sum_probs=48.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC---------CC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP---------PQ  664 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA---------ed  664 (687)
                      ....+.+|||+|||+|..+.++|++.+ ..+|+.-|.++ .++..+.|++.++.  ....++.+..-+-         ..
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~  117 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP  117 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred             hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence            456789999999999999999998843 46999999999 99999999998762  1133444443221         12


Q ss_pred             CCccEEEE
Q psy14969        665 QDASRVNI  672 (687)
Q Consensus       665 aPFDLILV  672 (687)
                      .+||+|+.
T Consensus       118 ~~~D~Ila  125 (173)
T PF10294_consen  118 HSFDVILA  125 (173)
T ss_dssp             SSBSEEEE
T ss_pred             ccCCEEEE
Confidence            46897765

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.42  E-value=0.00011  Score=76.05  Aligned_cols=58  Identities=28%  Similarity=0.453  Sum_probs=49.3

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      +.|.+.+.++..+  +..+=.++||+|||||..+..|-.++.   +++|+|+|..|++.|.++
T Consensus       109 ~vP~~l~emI~~~--~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         109 SVPELLAEMIGKA--DLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK  166 (287)
T ss_pred             ccHHHHHHHHHhc--cCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhc
Confidence            4677788887766  455567999999999999999988886   899999999999998874

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.40  E-value=0.0012  Score=75.26  Aligned_cols=81  Identities=19%  Similarity=0.202  Sum_probs=64.1

Q ss_pred             CcHHHHHHHHHHhhhcC-CCCCeEEEEcCCccHHHHHHHHhcC---C---------------------------------
Q psy14969        579 NSPSFIASSLEPALLKL-KPGDTVLDVGTGSGYTAACLGYMVR---P---------------------------------  621 (687)
Q Consensus       579 SaP~VvAlLLElLkedL-kpG~RVLDIGCGTGYLTAaLArLVG---P---------------------------------  621 (687)
                      ..|.+.+.|+.+.  .. .++..++|-+||||.+.+..|.++.   |                                 
T Consensus       173 l~etlAaa~l~~a--~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        173 LKENLAAAILLRS--GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CcHHHHHHHHHHc--CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            4566777777654  44 5688999999999999987766421   1                                 


Q ss_pred             -----CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC
Q psy14969        622 -----HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ  665 (687)
Q Consensus       622 -----~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda  665 (687)
                           ..+++|+|+++.+++.|+.|+..+|+    .+.+.+..+|....
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~  295 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADL  295 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhc
Confidence                 23699999999999999999999998    67789999987543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.37  E-value=0.00085  Score=71.18  Aligned_cols=41  Identities=22%  Similarity=0.195  Sum_probs=34.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFS  638 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~A  638 (687)
                      -.|++|||||||.||++..|+...+  ..|+|+|.+.......
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF  154 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQF  154 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHH
Confidence            4689999999999999999998853  4899999998876653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.37  E-value=0.00035  Score=70.35  Aligned_cols=40  Identities=25%  Similarity=0.231  Sum_probs=34.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF  637 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~  637 (687)
                      .++.+|||||||||++|..+++..  ..+|+|+|+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHH
Confidence            367899999999999999999873  3589999999988765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.0018  Score=68.60  Aligned_cols=79  Identities=19%  Similarity=0.268  Sum_probs=64.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------  664 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------  664 (687)
                      ++++|.+|||+.++.|.=|..+|+++.. .+.|+++|+++.-++..++|+++.|+     .++.++..|+..        
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-----~nv~~~~~d~~~~~~~~~~~  227 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-----RNVIVVNKDARRLAELLPGG  227 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CceEEEeccccccccccccc
Confidence            7899999999999999999999999854 35669999999999999999999998     335566655432        


Q ss_pred             CCccEEEEEecCCC
Q psy14969        665 QDASRVNISVEPQK  678 (687)
Q Consensus       665 aPFDLILVVfAP~K  678 (687)
                      .+||.|++.+ ||-
T Consensus       228 ~~fD~iLlDa-PCS  240 (355)
T COG0144         228 EKFDRILLDA-PCS  240 (355)
T ss_pred             CcCcEEEECC-CCC
Confidence            1499997765 653

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.22  E-value=0.0014  Score=70.14  Aligned_cols=74  Identities=35%  Similarity=0.435  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      ..+|.+|||.=+|-||+|..+|+...+  +|+|+|++|+++++.++|++.+++    .+++..+.||+..     ..+|.
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDr  259 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADR  259 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCE
Confidence            456999999999999999999998753  499999999999999999999998    7779999999753     44788


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus       260 Iim~~  264 (341)
T COG2520         260 IIMGL  264 (341)
T ss_pred             EEeCC
Confidence            87765

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.22  E-value=0.0016  Score=66.95  Aligned_cols=78  Identities=21%  Similarity=0.269  Sum_probs=65.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------CC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------QD  666 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------aP  666 (687)
                      .+.+|.+|||+++|.|.-|..+|+++...|.|++.|+++.-+...+.++++.|.     ..+.+...|+..       ..
T Consensus        82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-----~~v~~~~~D~~~~~~~~~~~~  156 (283)
T PF01189_consen   82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-----FNVIVINADARKLDPKKPESK  156 (283)
T ss_dssp             TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHTTT
T ss_pred             cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-----ceEEEEeeccccccccccccc
Confidence            688999999999999999999999987789999999999999999999999997     456666666432       24


Q ss_pred             ccEEEEEecCC
Q psy14969        667 ASRVNISVEPQ  677 (687)
Q Consensus       667 FDLILVVfAP~  677 (687)
                      ||.|++.+ ||
T Consensus       157 fd~VlvDa-PC  166 (283)
T PF01189_consen  157 FDRVLVDA-PC  166 (283)
T ss_dssp             EEEEEEEC-SC
T ss_pred             cchhhcCC-Cc
Confidence            89887765 44

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.22  E-value=0.0013  Score=71.36  Aligned_cols=80  Identities=16%  Similarity=0.105  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---------CCCc
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------QQDA  667 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------daPF  667 (687)
                      .|++|||+=|=||..+...|....  .+|++||.|+.+++.|++|++-+++   ...++.++++|+-         ...|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~~~~~~g~~f  291 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLRKAERRGEKF  291 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHHHHHhcCCcc
Confidence            499999999999999998775532  4899999999999999999999997   3457899999963         3589


Q ss_pred             cEEEEE---ecCCCcCc
Q psy14969        668 SRVNIS---VEPQKSGE  681 (687)
Q Consensus       668 DLILVV---fAP~K~gE  681 (687)
                      |+|++.   |+-.|.++
T Consensus       292 DlIilDPPsF~r~k~~~  308 (393)
T COG1092         292 DLIILDPPSFARSKKQE  308 (393)
T ss_pred             cEEEECCcccccCcccc
Confidence            988663   44444444

>PLN02823 spermine synthase

Probab=97.21  E-value=0.0017  Score=68.85  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL  669 (687)
                      ..+.+||.||+|.|+.+..+.+.. +..+|+.||+++.+++.|++.+...+ ......++.++.+|+.      ...||+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~-~~~~dprv~v~~~Da~~~L~~~~~~yDv  179 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNR-EAFCDKRLELIINDARAELEKRDEKFDV  179 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccc-ccccCCceEEEEChhHHHHhhCCCCccE
Confidence            356799999999999998887754 24589999999999999999876432 1234578999999864      346999


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |++..
T Consensus       180 Ii~D~  184 (336)
T PLN02823        180 IIGDL  184 (336)
T ss_pred             EEecC
Confidence            99884

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.10  E-value=0.0025  Score=67.19  Aligned_cols=85  Identities=15%  Similarity=0.267  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      |-|..-++++|  .+.+|+.++|.-+|.|..|..+++.++ .|+|+|+|.++.+++.|+++++..+      .++.++++
T Consensus         6 pVll~Evl~~L--~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~   76 (305)
T TIGR00006         6 SVLLDEVVEGL--NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHD   76 (305)
T ss_pred             chhHHHHHHhc--CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeC
Confidence            55777788887  678899999999999999999999885 5899999999999999999987642      47888877


Q ss_pred             CCCC----------CCccEEEEEe
Q psy14969        661 LPPQ----------QDASRVNISV  674 (687)
Q Consensus       661 DAed----------aPFDLILVVf  674 (687)
                      +-..          ..+|.|+...
T Consensus        77 nF~~l~~~l~~~~~~~vDgIl~DL  100 (305)
T TIGR00006        77 NFANFFEHLDELLVTKIDGILVDL  100 (305)
T ss_pred             CHHHHHHHHHhcCCCcccEEEEec
Confidence            6321          2367776643

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2899|consensus

Probab=97.09  E-value=0.00069  Score=70.55  Aligned_cols=52  Identities=19%  Similarity=0.315  Sum_probs=45.8

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      ..-.+..+|||||-+|.+|+.+|+.+++ -.|.|+||++.+++.|+++++...
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~  106 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPC  106 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccc
Confidence            3456789999999999999999999974 489999999999999999987643

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.08  E-value=0.0024  Score=61.96  Aligned_cols=89  Identities=15%  Similarity=0.096  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +-..+...|....-+|.+|||+-||||.++........  .+|+.||.++.++...++|++..+.    ..++.++.+|+
T Consensus        28 vrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~~~d~  101 (183)
T PF03602_consen   28 VREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVIKGDA  101 (183)
T ss_dssp             HHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSH
T ss_pred             HHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCC----CcceeeeccCH
Confidence            44444544421113789999999999999987666643  4999999999999999999999987    45788888884


Q ss_pred             ---------CCCCccEEEEEecCCCc
Q psy14969        663 ---------PQQDASRVNISVEPQKS  679 (687)
Q Consensus       663 ---------edaPFDLILVVfAP~K~  679 (687)
                               ...+||+|++.  ||-.
T Consensus       102 ~~~l~~~~~~~~~fDiIflD--PPY~  125 (183)
T PF03602_consen  102 FKFLLKLAKKGEKFDIIFLD--PPYA  125 (183)
T ss_dssp             HHHHHHHHHCTS-EEEEEE----STT
T ss_pred             HHHHHhhcccCCCceEEEEC--CCcc
Confidence                     24678977655  5543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.06  E-value=0.0019  Score=65.24  Aligned_cols=70  Identities=13%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--------CCCccEE
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--------QQDASRV  670 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--------daPFDLI  670 (687)
                      ..+||||||.|-..+.+|+.- |+..++|||+....+..|.+.+.+.++     .++.++.+||.        +..+|.|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l-----~Nlri~~~DA~~~l~~~~~~~sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGL-----KNLRLLCGDAVEVLDYLIPDGSLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCC-----CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence            489999999999999999997 688999999999999999999999987     38999999974        3367888


Q ss_pred             EEEe
Q psy14969        671 NISV  674 (687)
Q Consensus       671 LVVf  674 (687)
                      .+.|
T Consensus       124 ~i~F  127 (227)
T COG0220         124 YINF  127 (227)
T ss_pred             EEEC
Confidence            8876

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.03  E-value=0.003  Score=63.90  Aligned_cols=95  Identities=18%  Similarity=0.163  Sum_probs=63.0

Q ss_pred             CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhc------CCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMV------RPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLV------GP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      .|+..+...++.+|.+.+  ...++.+|||-.||+|.+...+.+.+      .+...++|+|+++.++..|+-++.-.+.
T Consensus        25 ~G~~~TP~~i~~l~~~~~--~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~  102 (311)
T PF02384_consen   25 LGQFYTPREIVDLMVKLL--NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI  102 (311)
T ss_dssp             CGGC---HHHHHHHHHHH--TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred             cceeehHHHHHHHHHhhh--hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence            355666777888888887  67788899999999999988877643      1356899999999999999998876664


Q ss_pred             CccCCCcEEEEEcCCC-------CCCccEEEEE
Q psy14969        648 HLLDEGVVNIMRTLPP-------QQDASRVNIS  673 (687)
Q Consensus       648 ~VaSsgRI~LI~GDAe-------daPFDLILVV  673 (687)
                         ......+..++.-       ...||.|+..
T Consensus       103 ---~~~~~~i~~~d~l~~~~~~~~~~~D~ii~N  132 (311)
T PF02384_consen  103 ---DNSNINIIQGDSLENDKFIKNQKFDVIIGN  132 (311)
T ss_dssp             ---HCBGCEEEES-TTTSHSCTST--EEEEEEE
T ss_pred             ---ccccccccccccccccccccccccccccCC
Confidence               1122346666642       2357766443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.03  E-value=0.00083  Score=68.19  Aligned_cols=61  Identities=18%  Similarity=0.213  Sum_probs=55.4

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCCc
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDA  667 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaPF  667 (687)
                      +.+.|+|+|||.++...|+.+.   +|++||.+|...+.|.+|+.-.|+     .++.++.||+....|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v~g~-----~n~evv~gDA~~y~f   94 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHVPGD-----VNWEVVVGDARDYDF   94 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCCCCC-----cceEEEecccccccc
Confidence            6899999999999999998875   999999999999999999877775     689999999998887

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.92  E-value=0.0045  Score=67.85  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=57.5

Q ss_pred             CCcccCcHHHHHHHHHHhhhcCC-----CCCeEEEEcCCccHHHHHHHHhcCC-------CcEEEEEeCCHHHHHHHHHH
Q psy14969        574 NCSYLNSPSFIASSLEPALLKLK-----PGDTVLDVGTGSGYTAACLGYMVRP-------HGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLkedLk-----pG~RVLDIGCGTGYLTAaLArLVGP-------~GrVtGIDISpeAVE~ARKN  641 (687)
                      .|+..+.+.++..|++.+.....     ...+|||.|||+|.+.+.++..+..       ...++|+|+++.++..|+.+
T Consensus         3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~   82 (524)
T TIGR02987         3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL   82 (524)
T ss_pred             CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence            46777788899998887632211     3459999999999999988876521       14789999999999999999


Q ss_pred             HHHcC
Q psy14969        642 IRKNH  646 (687)
Q Consensus       642 LKkaG  646 (687)
                      +...+
T Consensus        83 l~~~~   87 (524)
T TIGR02987        83 LGEFA   87 (524)
T ss_pred             HhhcC
Confidence            88775

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.84  E-value=0.0086  Score=59.68  Aligned_cols=85  Identities=19%  Similarity=0.115  Sum_probs=64.7

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      |-..+...+.+.--.|.++||+=+|||.+++..+....  .+|+.||.+..++...++|++..+.    ..+..++..|+
T Consensus        29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~~~~da  102 (187)
T COG0742          29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGL----EGEARVLRNDA  102 (187)
T ss_pred             HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCC----ccceEEEeecH
Confidence            44555555521124688999999999999988877753  4899999999999999999999986    56777777775


Q ss_pred             C--------CCCccEEEEE
Q psy14969        663 P--------QQDASRVNIS  673 (687)
Q Consensus       663 e--------daPFDLILVV  673 (687)
                      .        ..+||+|++.
T Consensus       103 ~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742         103 LRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             HHHHHhcCCCCcccEEEeC
Confidence            4        2258877654

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.75  E-value=0.0075  Score=62.83  Aligned_cols=77  Identities=10%  Similarity=0.091  Sum_probs=63.4

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccEEEE
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASRVNI  672 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDLILV  672 (687)
                      ++||-||-|.|..+..+.+... ..+++.||+++..++.|++.+........ ..|+.++.+|+.      ...||+|++
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            6999999999999999998863 56999999999999999999887653112 579999999963      226999999


Q ss_pred             EecCC
Q psy14969        673 SVEPQ  677 (687)
Q Consensus       673 VfAP~  677 (687)
                      ....+
T Consensus       156 D~tdp  160 (282)
T COG0421         156 DSTDP  160 (282)
T ss_pred             cCCCC
Confidence            85544

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.74  E-value=0.0084  Score=58.57  Aligned_cols=66  Identities=24%  Similarity=0.189  Sum_probs=51.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-CCC-ccEEE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-QQD-ASRVN  671 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-daP-FDLIL  671 (687)
                      ...+..+|||||.|+|.++..+++.. |+.+++.+|. |..++.|++           .+|+.++.||-- ..| +|+++
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f~~~P~~D~~~  163 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFFDPLPVADVYL  163 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TTTCCSSESEEE
T ss_pred             cccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-----------ccccccccccHHhhhcccccee
Confidence            56677899999999999999999997 7999999999 888888888           358999999853 122 67666


Q ss_pred             E
Q psy14969        672 I  672 (687)
Q Consensus       672 V  672 (687)
                      +
T Consensus       164 l  164 (241)
T PF00891_consen  164 L  164 (241)
T ss_dssp             E
T ss_pred             e
Confidence            5

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=96.67  E-value=0.012  Score=61.67  Aligned_cols=93  Identities=16%  Similarity=0.075  Sum_probs=63.0

Q ss_pred             CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969        575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV  654 (687)
Q Consensus       575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR  654 (687)
                      |..+-......++.+..     .|++|||+=|=||..+...+.. | ..+|++||.|+.+++.|++|++-+++   ...+
T Consensus       106 GlFlDqR~nR~~v~~~~-----~gkrvLnlFsYTGgfsv~Aa~g-G-A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~  175 (286)
T PF10672_consen  106 GLFLDQRENRKWVRKYA-----KGKRVLNLFSYTGGFSVAAAAG-G-AKEVVSVDSSKRALEWAKENAALNGL---DLDR  175 (286)
T ss_dssp             SS-GGGHHHHHHHHHHC-----TTCEEEEET-TTTHHHHHHHHT-T-ESEEEEEES-HHHHHHHHHHHHHTT----CCTC
T ss_pred             eEcHHHHhhHHHHHHHc-----CCCceEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCC---Cccc
Confidence            33344444555554443     6899999999999999886644 3 34899999999999999999999987   2367


Q ss_pred             EEEEEcCCC--------CCCccEEEEEecCCCc
Q psy14969        655 VNIMRTLPP--------QQDASRVNISVEPQKS  679 (687)
Q Consensus       655 I~LI~GDAe--------daPFDLILVVfAP~K~  679 (687)
                      +.++.+|+-        ...||+|++  +||..
T Consensus       176 ~~~~~~Dvf~~l~~~~~~~~fD~IIl--DPPsF  206 (286)
T PF10672_consen  176 HRFIQGDVFKFLKRLKKGGRFDLIIL--DPPSF  206 (286)
T ss_dssp             EEEEES-HHHHHHHHHHTT-EEEEEE----SSE
T ss_pred             eEEEecCHHHHHHHHhcCCCCCEEEE--CCCCC
Confidence            899998863        357997755  45543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.66  E-value=0.0089  Score=63.30  Aligned_cols=77  Identities=16%  Similarity=0.088  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----ccCCCcEEEEEcCCC--------
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH-----LLDEGVVNIMRTLPP--------  663 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~-----VaSsgRI~LI~GDAe--------  663 (687)
                      ++.+|||+|||-|.-..-....-  -..++|+|++...++.|++|++...-.     ..-.-...++.+|..        
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            78899999999888766665542  359999999999999999999432210     000124566777643        


Q ss_pred             ---CCCccEEEEEec
Q psy14969        664 ---QQDASRVNISVE  675 (687)
Q Consensus       664 ---daPFDLILVVfA  675 (687)
                         ..+||+|.+-++
T Consensus       140 ~~~~~~FDvVScQFa  154 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFA  154 (331)
T ss_dssp             SSTTS-EEEEEEES-
T ss_pred             cccCCCcceeehHHH
Confidence               247888877653

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.65  E-value=0.0082  Score=60.64  Aligned_cols=78  Identities=19%  Similarity=0.161  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CC-Cc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQ-DA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------da-PF  667 (687)
                      ...+.+||-||-|.|..+..+.+.- +..+|+.||+++.+++.|++.+...... ....|++++.+|+.      .. .|
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~y  151 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKY  151 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-E
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCcc
Confidence            4467899999999999999888764 3469999999999999999988764321 34679999999962      23 79


Q ss_pred             cEEEEEe
Q psy14969        668 SRVNISV  674 (687)
Q Consensus       668 DLILVVf  674 (687)
                      |+|++..
T Consensus       152 DvIi~D~  158 (246)
T PF01564_consen  152 DVIIVDL  158 (246)
T ss_dssp             EEEEEES
T ss_pred             cEEEEeC
Confidence            9998873

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.63  E-value=0.0043  Score=66.65  Aligned_cols=73  Identities=16%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccEEEE
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASRVNI  672 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDLILV  672 (687)
                      -+|||+.||||..++.++..++....|+++|+++.+++.+++|++.++.     .++.++.+|+.      ...||+|.+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            4899999999999999998752134899999999999999999999876     35778888865      245897765


Q ss_pred             EecCCC
Q psy14969        673 SVEPQK  678 (687)
Q Consensus       673 VfAP~K  678 (687)
                        +|..
T Consensus       121 --DPfG  124 (374)
T TIGR00308       121 --DPFG  124 (374)
T ss_pred             --CCCC
Confidence              5643

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.62  E-value=0.0083  Score=59.71  Aligned_cols=91  Identities=21%  Similarity=0.286  Sum_probs=56.6

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CccCCCcE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA----HLLDEGVV  655 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~----~VaSsgRI  655 (687)
                      .|...+.+++.+  .+.+++..+|||||.|-.....|...+ -.+++|||+.+...+.|........-    .-....++
T Consensus        27 ~~~~~~~il~~~--~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v  103 (205)
T PF08123_consen   27 SPEFVSKILDEL--NLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV  103 (205)
T ss_dssp             HHHHHHHHHHHT--T--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred             CHHHHHHHHHHh--CCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            455666777777  688999999999999999888776653 34699999999999998875543221    01124678


Q ss_pred             EEEEcCCCCC--------CccEEEEE
Q psy14969        656 NIMRTLPPQQ--------DASRVNIS  673 (687)
Q Consensus       656 ~LI~GDAeda--------PFDLILVV  673 (687)
                      .+..||-...        ..|+|++.
T Consensus       104 ~l~~gdfl~~~~~~~~~s~AdvVf~N  129 (205)
T PF08123_consen  104 ELIHGDFLDPDFVKDIWSDADVVFVN  129 (205)
T ss_dssp             EEECS-TTTHHHHHHHGHC-SEEEE-
T ss_pred             eeeccCccccHhHhhhhcCCCEEEEe
Confidence            8888885442        24666554

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG4300|consensus

Probab=96.62  E-value=0.003  Score=64.82  Aligned_cols=69  Identities=19%  Similarity=0.210  Sum_probs=52.0

Q ss_pred             eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE-EEEcCCCCCC------ccEEEE
Q psy14969        600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN-IMRTLPPQQD------ASRVNI  672 (687)
Q Consensus       600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~-LI~GDAedaP------FDLILV  672 (687)
                      .|||||||||..=-.+- . .|..+|+.+|.++.|-+.|.+.+++...     -++. |+.++++.+|      +|.|+.
T Consensus        79 ~vLEvgcGtG~Nfkfy~-~-~p~~svt~lDpn~~mee~~~ks~~E~k~-----~~~~~fvva~ge~l~~l~d~s~DtVV~  151 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYP-W-KPINSVTCLDPNEKMEEIADKSAAEKKP-----LQVERFVVADGENLPQLADGSYDTVVC  151 (252)
T ss_pred             ceEEecccCCCCccccc-C-CCCceEEEeCCcHHHHHHHHHHHhhccC-----cceEEEEeechhcCcccccCCeeeEEE
Confidence            57999999997744432 1 1567999999999999999999998754     2444 7777776555      888876


Q ss_pred             Eec
Q psy14969        673 SVE  675 (687)
Q Consensus       673 VfA  675 (687)
                      ++-
T Consensus       152 Tlv  154 (252)
T KOG4300|consen  152 TLV  154 (252)
T ss_pred             EEE
Confidence            643

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.57  E-value=0.0088  Score=66.25  Aligned_cols=72  Identities=11%  Similarity=0.036  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCccE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDASR  669 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPFDL  669 (687)
                      .+..+||||||.|-+++.+|+.. |+..++|+|+....+..|.+.+...++     .++.++.+++.       ...+|.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l-----~N~~~~~~~~~~~~~~~~~~sv~~  420 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNI-----TNFLLFPNNLDLILNDLPNNSLDG  420 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCC-----CeEEEEcCCHHHHHHhcCcccccE
Confidence            46789999999999999999997 688999999999999999999888887     46777777653       345888


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |.+.|
T Consensus       421 i~i~F  425 (506)
T PRK01544        421 IYILF  425 (506)
T ss_pred             EEEEC
Confidence            88876

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.56  E-value=0.011  Score=60.65  Aligned_cols=89  Identities=22%  Similarity=0.322  Sum_probs=60.6

Q ss_pred             HHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHH----HHHHHHHHHHcCCCccCCCcEEE
Q psy14969        583 FIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYL----VNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       583 VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeA----VE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +.|.++.-+. -.+++|.+||-+|..+|.....++..+++.|.|+|||.++..    +..|++|           .+|--
T Consensus        58 LaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----------~NIiP  126 (229)
T PF01269_consen   58 LAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----------PNIIP  126 (229)
T ss_dssp             HHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----------TTEEE
T ss_pred             HHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----------Cceee
Confidence            5555544332 167899999999999999999999999999999999999954    5555443           25555


Q ss_pred             EEcCCCC--------CCccEEEEEecCCCcCcc
Q psy14969        658 MRTLPPQ--------QDASRVNISVEPQKSGEI  682 (687)
Q Consensus       658 I~GDAed--------aPFDLILVVfAP~K~gEl  682 (687)
                      +.+||..        ...|+|+..++.+...+|
T Consensus       127 Il~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I  159 (229)
T PF01269_consen  127 ILEDARHPEKYRMLVEMVDVIFQDVAQPDQARI  159 (229)
T ss_dssp             EES-TTSGGGGTTTS--EEEEEEE-SSTTHHHH
T ss_pred             eeccCCChHHhhcccccccEEEecCCChHHHHH
Confidence            6677652        358999988887765554

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.54  E-value=0.0096  Score=64.11  Aligned_cols=80  Identities=21%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|.+...+..+.  .+++|..|||==||||.+......+.   ++|+|.|++..|++-|+.|++..++     ....+.
T Consensus       181 ~~P~lAR~mVNLa--~v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i-----~~~~~~  250 (347)
T COG1041         181 MDPRLARAMVNLA--RVKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGI-----EDYPVL  250 (347)
T ss_pred             cCHHHHHHHHHHh--ccccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCc-----CceeEE
Confidence            4667777777766  79999999999999999998877554   4999999999999999999999986     234445


Q ss_pred             Ec-CCCCCCcc
Q psy14969        659 RT-LPPQQDAS  668 (687)
Q Consensus       659 ~G-DAedaPFD  668 (687)
                      .+ |+...|++
T Consensus       251 ~~~Da~~lpl~  261 (347)
T COG1041         251 KVLDATNLPLR  261 (347)
T ss_pred             EecccccCCCC
Confidence            44 77766654

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.51  E-value=0.0047  Score=61.72  Aligned_cols=79  Identities=11%  Similarity=0.070  Sum_probs=57.3

Q ss_pred             CCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        565 YHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       565 YsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                      |.+.|..+|.- .-+.+.+.++|+..+  +...|.-|||+|.|||.+|-++....-+...+++||++++.+..-.+.+..
T Consensus        19 wi~~PrtVGaI-~PsSs~lA~~M~s~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~   95 (194)
T COG3963          19 WIDNPRTVGAI-LPSSSILARKMASVI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG   95 (194)
T ss_pred             HhcCCceeeee-cCCcHHHHHHHHhcc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC
Confidence            44444444321 124555777777766  677888999999999999977766654567999999999999888777655


Q ss_pred             cC
Q psy14969        645 NH  646 (687)
Q Consensus       645 aG  646 (687)
                      .+
T Consensus        96 ~~   97 (194)
T COG3963          96 VN   97 (194)
T ss_pred             cc
Confidence            43

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.44  E-value=0.019  Score=62.49  Aligned_cols=80  Identities=20%  Similarity=0.219  Sum_probs=65.2

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC---C----------------------------Cc----
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR---P----------------------------HG----  623 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG---P----------------------------~G----  623 (687)
                      ..+.+.+.|+.+.  ..+++..++|==||||.+.+-.|.+..   |                            .+    
T Consensus       175 LketLAaAil~la--gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~  252 (381)
T COG0116         175 LKETLAAAILLLA--GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK  252 (381)
T ss_pred             chHHHHHHHHHHc--CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence            3455666666554  677888999999999999988887652   1                            11    


Q ss_pred             ---EEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        624 ---KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       624 ---rVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                         .++|+|+++.+++.|+.|...+|+    .+.|.|.++|+..
T Consensus       253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv----~d~I~f~~~d~~~  292 (381)
T COG0116         253 ELPIIYGSDIDPRHIEGAKANARAAGV----GDLIEFKQADATD  292 (381)
T ss_pred             ccceEEEecCCHHHHHHHHHHHHhcCC----CceEEEEEcchhh
Confidence               378999999999999999999999    8899999999774

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.31  E-value=0.016  Score=58.59  Aligned_cols=69  Identities=23%  Similarity=0.308  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----ccEEEE
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----ASRVNI  672 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FDLILV  672 (687)
                      +.+++|||+|.|.=+..||-.. |+.+|+-+|....-+..-+.-..+.++     .++.++++.+++..     ||+|+.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L-----~nv~i~~~RaE~~~~~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGL-----ENVEIVHGRAEEFGQEKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCC-----CCeEEehhhHhhcccccccCcEEEe
Confidence            6899999999999999999555 788899999999999999998889887     56899999988654     998875

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.27  E-value=0.031  Score=59.18  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=41.2

Q ss_pred             CCeEEEEcCCccHH-HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCccCCCcEEEEEcC
Q psy14969        598 GDTVLDVGTGSGYT-AACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-HAHLLDEGVVNIMRTL  661 (687)
Q Consensus       598 G~RVLDIGCGTGYL-TAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-G~~VaSsgRI~LI~GD  661 (687)
                      .-++||||||.-.+ ....++..  +.+++|.|+++..++.|+++++.+ ++    ..+|.++...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~~~~  162 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNL----ESRIELRKQK  162 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--
T ss_pred             ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEEEcC
Confidence            45899999997754 45545554  589999999999999999999999 77    7788887654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG3010|consensus

Probab=96.24  E-value=0.0069  Score=63.00  Aligned_cols=42  Identities=26%  Similarity=0.338  Sum_probs=35.8

Q ss_pred             eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                      .++|||||+|.-+..+|....   +|+|+|+++.|++.|++.-+.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~   77 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPV   77 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCc
Confidence            899999999977777777764   899999999999998885443

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.14  E-value=0.0025  Score=54.71  Aligned_cols=70  Identities=27%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             EEEcCCccHHHHHHHHhcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCccEEEE
Q psy14969        602 LDVGTGSGYTAACLGYMVRPHG--KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDASRVNI  672 (687)
Q Consensus       602 LDIGCGTGYLTAaLArLVGP~G--rVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPFDLILV  672 (687)
                      ||||+..|+.|..+++.+.+.+  +++++|..+. .+.+++.+++.++    ..++.++.|+..       ..++|++++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~----~~~~~~~~g~s~~~l~~~~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL----SDRVEFIQGDSPDFLPSLPDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC----CCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence            6999999999999998876554  7999999997 4455556665555    567999999965       257899988


Q ss_pred             EecC
Q psy14969        673 SVEP  676 (687)
Q Consensus       673 VfAP  676 (687)
                      ...+
T Consensus        76 Dg~H   79 (106)
T PF13578_consen   76 DGDH   79 (106)
T ss_dssp             ES--
T ss_pred             CCCC
Confidence            8754

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.14  E-value=0.018  Score=57.42  Aligned_cols=68  Identities=25%  Similarity=0.200  Sum_probs=52.7

Q ss_pred             EEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----C-CccEEEEE
Q psy14969        601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----Q-DASRVNIS  673 (687)
Q Consensus       601 VLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----a-PFDLILVV  673 (687)
                      |.||||-=||+...|.+.. ...+|+++|+++.-++.|++++++.++    .+++.+..||+-.    . ..|.|++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~l~~~e~~d~ivIA   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEVLKPGEDVDTIVIA   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEE
T ss_pred             CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccccCCCCCCCEEEEe
Confidence            6899999999999999885 345899999999999999999999998    7899999999532    1 25566553

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1501|consensus

Probab=96.12  E-value=0.0088  Score=66.71  Aligned_cols=56  Identities=21%  Similarity=0.335  Sum_probs=48.4

Q ss_pred             eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .|||||+|||.++.+.++..+ + .|+|+|.-+.|++.|++-..++|+    +++|.++.-.
T Consensus        69 ~vLdigtGTGLLSmMAvraga-D-~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkr  124 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA-D-SVTACEVFKPMVDLARKIMHKNGM----SDKINVINKR  124 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC-C-eEEeehhhchHHHHHHHHHhcCCC----ccceeeeccc
Confidence            689999999999988887764 3 799999999999999999999999    6677776533

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.11  E-value=0.033  Score=57.12  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=40.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      .+.+|||+|+|+|.-+.++....+.-.+++++|.++.|++.|+.-+....
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~   82 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP   82 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence            45699999999998776666665434689999999999999998766543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.07  E-value=0.022  Score=55.88  Aligned_cols=67  Identities=24%  Similarity=0.350  Sum_probs=55.2

Q ss_pred             eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEE
Q psy14969        600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNI  672 (687)
Q Consensus       600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILV  672 (687)
                      +++|||+|.|.=+..||-+. |+.+|+.+|....-+..-+.-....++     .++.++.+.++.    ..||.|+.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~~~~~~~fd~v~a  121 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL-----SNVEVINGRAEEPEYRESFDVVTA  121 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHHTTTTT-EEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC-----CCEEEEEeeecccccCCCccEEEe
Confidence            89999999999999999887 688999999999999999999999998     468888888654    55777654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.02  E-value=0.049  Score=42.04  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=32.5

Q ss_pred             EEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       601 VLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                      +||+|||+|..+ .++........++|+|+++.++..++.....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG   94 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh
Confidence            999999999987 5555543123799999999999986655543

>KOG1122|consensus

Probab=95.99  E-value=0.02  Score=63.43  Aligned_cols=79  Identities=16%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-------
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-------  666 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-------  666 (687)
                      ++++|.||||+.+..|.-|..+|.++.-.|.|+|.|.+..-++.-+.++.+.|+     ....+...|....|       
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-----~ntiv~n~D~~ef~~~~~~~~  312 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-----TNTIVSNYDGREFPEKEFPGS  312 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-----CceEEEccCcccccccccCcc
Confidence            689999999999999999999999987789999999999999999999999998     33445555655543       


Q ss_pred             ccEEEEEecCCC
Q psy14969        667 ASRVNISVEPQK  678 (687)
Q Consensus       667 FDLILVVfAP~K  678 (687)
                      ||+|+..+ ||.
T Consensus       313 fDRVLLDA-PCS  323 (460)
T KOG1122|consen  313 FDRVLLDA-PCS  323 (460)
T ss_pred             cceeeecC-CCC
Confidence            99998775 654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.86  E-value=0.028  Score=56.75  Aligned_cols=51  Identities=20%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             CCCC-eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        596 KPGD-TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       596 kpG~-RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      .... +|||||+|||--+..+|+.+ |+.+-.--|+++.....-+..+...+.
T Consensus        23 ~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~   74 (204)
T PF06080_consen   23 PDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL   74 (204)
T ss_pred             CccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC
Confidence            3344 59999999999999999999 577888999999998777777777776

The function of this family is unknown.

>KOG2730|consensus

Probab=95.81  E-value=0.013  Score=60.62  Aligned_cols=60  Identities=10%  Similarity=0.039  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ....|+|.=||.|..|+.+|....   .|++||++|.-+..|++|++-.|+    ..||.|++||..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~l  153 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFL  153 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecC----CceeEEEechHH
Confidence            567899999999999999998765   799999999999999999999998    679999999943

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=95.64  E-value=0.015  Score=59.23  Aligned_cols=70  Identities=20%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC--CCCCccEEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP--PQQDASRVNI  672 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA--edaPFDLILV  672 (687)
                      .-.|++|||.|+|+|.-+++.++.+.  ..|++.|++|.++...+-|.+.+++      .+.++..+.  ....||+++.
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g~~~~~Dl~La  148 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIGSPPAFDLLLA  148 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccCCCcceeEEEe
Confidence            34789999999999999988887764  5899999999999999999999987      556665553  3344777765

>PRK10742 putative methyltransferase; Provisional

Probab=95.63  E-value=0.089  Score=54.69  Aligned_cols=87  Identities=14%  Similarity=0.185  Sum_probs=64.2

Q ss_pred             HHHHHhhhcCCCCC--eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CccC--CCcEEEEE
Q psy14969        586 SSLEPALLKLKPGD--TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA--HLLD--EGVVNIMR  659 (687)
Q Consensus       586 lLLElLkedLkpG~--RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~--~VaS--sgRI~LI~  659 (687)
                      .++.++  .+++|.  +|||.-+|+|..+..++.+.   ++|+++|.++.+....+.+++....  .+..  ..++.++.
T Consensus        77 ~l~kAv--glk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         77 AVAKAV--GIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             HHHHHh--CCCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            344444  577887  99999999999999999884   4799999999999999999998521  1111  25789999


Q ss_pred             cCCC------CCCccEEEEEecCCCc
Q psy14969        660 TLPP------QQDASRVNISVEPQKS  679 (687)
Q Consensus       660 GDAe------daPFDLILVVfAP~K~  679 (687)
                      +++.      ...||+|.+  +|+-.
T Consensus       152 ~da~~~L~~~~~~fDVVYl--DPMfp  175 (250)
T PRK10742        152 ASSLTALTDITPRPQVVYL--DPMFP  175 (250)
T ss_pred             CcHHHHHhhCCCCCcEEEE--CCCCC
Confidence            8853      225887764  45433

>PRK00536 speE spermidine synthase; Provisional

Probab=95.54  E-value=0.07  Score=55.34  Aligned_cols=77  Identities=14%  Similarity=-0.097  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--CCCccEEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--QQDASRVNI  672 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--daPFDLILV  672 (687)
                      .+.+++||-||.|.|..+..+.+.-  . +|+-||+++.+++.+++.+....- .....|+.++..-..  ...||+|++
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh~--~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~~~~~~~~~fDVIIv  145 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKYD--T-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQLLDLDIKKYDLIIC  145 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCcC--C-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeehhhhccCCcCCEEEE
Confidence            4567899999999999999998873  3 999999999999999998886532 345678888765433  246999998


Q ss_pred             Eec
Q psy14969        673 SVE  675 (687)
Q Consensus       673 VfA  675 (687)
                      ...
T Consensus       146 Ds~  148 (262)
T PRK00536        146 LQE  148 (262)
T ss_pred             cCC
Confidence            743

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.44  E-value=0.022  Score=60.46  Aligned_cols=72  Identities=19%  Similarity=0.299  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      |-|..-+++.|  .++++..++|.--|.|..|..+.+..+ .++|+|+|.++.+++.|++++...      .+++.++.+
T Consensus         6 PVll~Evl~~L--~~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~   76 (310)
T PF01795_consen    6 PVLLKEVLEAL--NPKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF------DDRFIFIHG   76 (310)
T ss_dssp             -TTHHHHHHHH--T--TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES
T ss_pred             cccHHHHHHhh--CcCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc------cceEEEEec
Confidence            45777778888  588899999999999999999998885 499999999999999999887765      358888887


Q ss_pred             C
Q psy14969        661 L  661 (687)
Q Consensus       661 D  661 (687)
                      .
T Consensus        77 ~   77 (310)
T PF01795_consen   77 N   77 (310)
T ss_dssp             -
T ss_pred             c
Confidence            7

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PHA01634 hypothetical protein

Probab=95.27  E-value=0.056  Score=52.48  Aligned_cols=76  Identities=14%  Similarity=-0.087  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCCccEEEEEecC
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEP  676 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaPFDLILVVfAP  676 (687)
                      .+.+|+|||.+-|-.++.++...+  ..|+++|.++.+.+..+.+++-+.++-.......+   .....|||...+.++.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW---~~~Y~~~Di~~iDCeG  102 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEW---NGEYEDVDIFVMDCEG  102 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhheeeeceeecccc---cccCCCcceEEEEccc
Confidence            588999999999999999997754  48999999999999999999888762111111111   1367889999888876


Q ss_pred             C
Q psy14969        677 Q  677 (687)
Q Consensus       677 ~  677 (687)
                      +
T Consensus       103 C  103 (156)
T PHA01634        103 C  103 (156)
T ss_pred             h
Confidence            5

>KOG1975|consensus

Probab=95.25  E-value=0.052  Score=58.91  Aligned_cols=79  Identities=19%  Similarity=0.131  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCcc-CCCcEEEEEcCCC----------
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL-DEGVVNIMRTLPP----------  663 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~Va-SsgRI~LI~GDAe----------  663 (687)
                      .++++.+||+|||-|.-..-.-++.-  +.++|+||....++.|++|++...-.-- -.-.+.|+.||-.          
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            67899999999999998877766543  5899999999999999999987542000 0123567777632          


Q ss_pred             CCC-ccEEEEEec
Q psy14969        664 QQD-ASRVNISVE  675 (687)
Q Consensus       664 daP-FDLILVVfA  675 (687)
                      ..| ||++..-|+
T Consensus       193 ~dp~fDivScQF~  205 (389)
T KOG1975|consen  193 KDPRFDIVSCQFA  205 (389)
T ss_pred             CCCCcceeeeeee
Confidence            355 888776543

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.21  E-value=0.098  Score=56.01  Aligned_cols=73  Identities=18%  Similarity=0.285  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      |-+..-+++.|  .++++...+|.--|.|..+..+...+++.++++|+|.++.+++.|++++...+      +++.++++
T Consensus         9 pVLl~E~i~~L--~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~   80 (314)
T COG0275           9 PVLLNEVVELL--APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHG   80 (314)
T ss_pred             chHHHHHHHhc--ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeC
Confidence            34666677777  68889999999999999999988888777899999999999999999998865      47777777


Q ss_pred             C
Q psy14969        661 L  661 (687)
Q Consensus       661 D  661 (687)
                      .
T Consensus        81 ~   81 (314)
T COG0275          81 N   81 (314)
T ss_pred             c
Confidence            5

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=95.15  E-value=0.036  Score=58.02  Aligned_cols=64  Identities=17%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCCccEEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNI  672 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaPFDLILV  672 (687)
                      ...++||||+|.|-.|..|+....   +|++-|.|+.|.    .++++.|+.++....  +.   ....+||+|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr----~rL~~kg~~vl~~~~--w~---~~~~~fDvIsc  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMR----WRLSKKGFTVLDIDD--WQ---QTDFKFDVISC  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHH----HHHHhCCCeEEehhh--hh---ccCCceEEEee
Confidence            356899999999999999999986   799999999995    566677874443222  11   12346887765

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.09  E-value=0.091  Score=54.08  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDL  669 (687)
                      ++.+.++.||||-=||+++.|-+.. +..++++.|+++..++.|.+++++++.    .++++...||.-     ...+|.
T Consensus        14 V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl~~l~~~d~~d~   88 (226)
T COG2384          14 VKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGLAVLELEDEIDV   88 (226)
T ss_pred             HHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCccccCccCCcCE
Confidence            4567779999999999999998875 567999999999999999999999998    788888888853     234676


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      +++.
T Consensus        89 ivIA   92 (226)
T COG2384          89 IVIA   92 (226)
T ss_pred             EEEe
Confidence            6554

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=94.91  E-value=0.02  Score=59.93  Aligned_cols=77  Identities=25%  Similarity=0.223  Sum_probs=57.7

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CccCCCcEEEEEcCCC-------CC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA-HLLDEGVVNIMRTLPP-------QQ  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~-~VaSsgRI~LI~GDAe-------da  665 (687)
                      .++.|.+|||.++|-||.++..++...  -.|+++|.+|..++.|.-|    .| .-+.+..++++.||+.       +.
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lN----PwSr~l~~~~i~iilGD~~e~V~~~~D~  204 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLN----PWSRELFEIAIKIILGDAYEVVKDFDDE  204 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccC----CCCccccccccEEecccHHHHHhcCCcc
Confidence            466799999999999999998877643  3899999999999988764    33 1122336899999964       45


Q ss_pred             CccEEEEEecCCC
Q psy14969        666 DASRVNISVEPQK  678 (687)
Q Consensus       666 PFDLILVVfAP~K  678 (687)
                      .||.|+-  +|++
T Consensus       205 sfDaIiH--DPPR  215 (287)
T COG2521         205 SFDAIIH--DPPR  215 (287)
T ss_pred             ccceEee--CCCc
Confidence            6887643  4554

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=94.65  E-value=0.03  Score=52.53  Aligned_cols=37  Identities=32%  Similarity=0.342  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHH
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEY  633 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpe  633 (687)
                      .+.+|||+||++|..+.++.+..++.++|+|+|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            3489999999999999999998855689999999977

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=94.23  E-value=0.26  Score=52.45  Aligned_cols=50  Identities=14%  Similarity=0.209  Sum_probs=42.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRP---HGKVYSLDHMEYLVNFSKENIR  643 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP---~GrVtGIDISpeAVE~ARKNLK  643 (687)
                      .+.++..++|+|||+|.-+..|...+.+   ..+.++||+|.++++.|.+++.
T Consensus        73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439        73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence            4667789999999999999888766532   3578999999999999999998

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=94.23  E-value=0.18  Score=52.58  Aligned_cols=53  Identities=25%  Similarity=0.247  Sum_probs=40.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      .+.+..+|+|||||.==++...-... ++..++|+||+..+++...+.+...++
T Consensus       102 ~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~  154 (251)
T PF07091_consen  102 RIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGV  154 (251)
T ss_dssp             CS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-
T ss_pred             cCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCC
Confidence            45668899999999887777665443 467999999999999999999999987

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.23  E-value=0.072  Score=55.17  Aligned_cols=49  Identities=29%  Similarity=0.394  Sum_probs=38.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHHHHc
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPH-GKVYSLDHMEYLVNFSKENIRKN  645 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~-GrVtGIDISpeAVE~ARKNLKka  645 (687)
                      .+-++.|=+||+||+...++-+-+.. ..|+|-||++++++.|++|+.-.
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL  100 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL  100 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence            34589999999999999998664322 58999999999999999998644

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.12  E-value=0.19  Score=46.82  Aligned_cols=56  Identities=27%  Similarity=0.362  Sum_probs=41.0

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      -.+.+...++...   ..+|+.|||-=+|||..+.+..++..   +.+|+|+++..++.|++
T Consensus       176 kP~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  176 KPVELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHhh---hccceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence            3446677777665   67899999999999977766555543   89999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=93.97  E-value=0.25  Score=51.92  Aligned_cols=72  Identities=13%  Similarity=0.121  Sum_probs=44.3

Q ss_pred             CeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCccCCCcEEEEEcCCCC-----CCccEEE
Q psy14969        599 DTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR-KNHAHLLDEGVVNIMRTLPPQ-----QDASRVN  671 (687)
Q Consensus       599 ~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK-kaG~~VaSsgRI~LI~GDAed-----aPFDLIL  671 (687)
                      .+|+=||+|. ...+..|++..+++..|+++|+++++++.|++-++ ..++    +.++.|+.+|...     ..||+|+
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~~~dl~~~DvV~  197 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDVTYDLKEYDVVF  197 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG----SEEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhccccccccCCEEE
Confidence            5999999996 44556667655556789999999999999999888 4455    6789999988642     4678776


Q ss_pred             EEe
Q psy14969        672 ISV  674 (687)
Q Consensus       672 VVf  674 (687)
                      +.+
T Consensus       198 lAa  200 (276)
T PF03059_consen  198 LAA  200 (276)
T ss_dssp             E-T
T ss_pred             Ehh
Confidence            654

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=93.77  E-value=0.2  Score=54.53  Aligned_cols=64  Identities=20%  Similarity=0.219  Sum_probs=45.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDL  669 (687)
                      +.+|+++|||||++|..|-.|.+...   +|+|||..+ |.    ..+.       ...+|....+++-     ..++|.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~----~~L~-------~~~~V~h~~~d~fr~~p~~~~vDw  273 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MA----QSLM-------DTGQVEHLRADGFKFRPPRKNVDW  273 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cC----Hhhh-------CCCCEEEEeccCcccCCCCCCCCE
Confidence            46899999999999999999998853   999999654 21    1222       2346777766642     345787


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      ++..
T Consensus       274 vVcD  277 (357)
T PRK11760        274 LVCD  277 (357)
T ss_pred             EEEe
Confidence            7665

>PRK11524 putative methyltransferase; Provisional

Probab=93.44  E-value=0.31  Score=49.88  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN  645 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka  645 (687)
                      .+...++...   -.+|+.|||-=+|||..+.+..++..   +.+|+|++++.++.|++|+...
T Consensus       196 ~L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl~~~  253 (284)
T PRK11524        196 ALLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRLDVA  253 (284)
T ss_pred             HHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHhc
Confidence            4666666654   57899999999999977666555533   7999999999999999998754

>KOG2361|consensus

Probab=93.41  E-value=0.082  Score=55.35  Aligned_cols=75  Identities=20%  Similarity=0.285  Sum_probs=49.7

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCC---ccCCCcEEEEEcCCCCCCccEEEEE
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPH--GKVYSLDHMEYLVNFSKENIRKNHAH---LLDEGVVNIMRTLPPQQDASRVNIS  673 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~--GrVtGIDISpeAVE~ARKNLKkaG~~---VaSsgRI~LI~GDAedaPFDLILVV  673 (687)
                      .+|||||||-|.....+.+-- ++  -.|+++|.++.+++..+++..-..-.   .+..-..+-..+..+...+|.|+.+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence            379999999999999888765 34  89999999999999988865443210   0000000002333445568887776


Q ss_pred             e
Q psy14969        674 V  674 (687)
Q Consensus       674 f  674 (687)
                      |
T Consensus       152 F  152 (264)
T KOG2361|consen  152 F  152 (264)
T ss_pred             E
Confidence            4

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.66  E-value=0.47  Score=49.01  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        582 SFIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       582 ~VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      .+.|.++.-|. -.+++|.+||=+|..+|.....++..++ .|.|+|||.++.....--.-+++.       .++--+.+
T Consensus        60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R-------~Ni~PIL~  131 (231)
T COG1889          60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR-------PNIIPILE  131 (231)
T ss_pred             HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC-------CCceeeec
Confidence            35566655553 2577999999999999999999999997 899999999987665444333332       24455566


Q ss_pred             CCCC--------CCccEEEEEecCCCcCcc
Q psy14969        661 LPPQ--------QDASRVNISVEPQKSGEI  682 (687)
Q Consensus       661 DAed--------aPFDLILVVfAP~K~gEl  682 (687)
                      ||..        ...|+|...+|.+...+|
T Consensus       132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I  161 (231)
T COG1889         132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEI  161 (231)
T ss_pred             ccCCcHHhhhhcccccEEEEecCCchHHHH
Confidence            6542        348999888888776655

>KOG1596|consensus

Probab=92.53  E-value=0.14  Score=54.05  Aligned_cols=81  Identities=22%  Similarity=0.359  Sum_probs=56.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCH----HHHHHHHHHHHHcCC--CccCCCcEEEEEcCCCCCCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHME----YLVNFSKENIRKNHA--HLLDEGVVNIMRTLPPQQDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISp----eAVE~ARKNLKkaG~--~VaSsgRI~LI~GDAedaPF  667 (687)
                      +++||.+||=+|+++|+....++..++|.|-||++|.+.    +++..|+++-.-..+  ....-++.....+-     .
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgm-----V  227 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGM-----V  227 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeee-----E
Confidence            789999999999999999999999999999999999885    566666665222111  00001222223332     6


Q ss_pred             cEEEEEecCCCc
Q psy14969        668 SRVNISVEPQKS  679 (687)
Q Consensus       668 DLILVVfAP~K~  679 (687)
                      |.|+..++++..
T Consensus       228 DvIFaDvaqpdq  239 (317)
T KOG1596|consen  228 DVIFADVAQPDQ  239 (317)
T ss_pred             EEEeccCCCchh
Confidence            777777776643

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=92.43  E-value=1.8  Score=46.73  Aligned_cols=64  Identities=13%  Similarity=0.005  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..-+||||.||.|.+..-.....+. .-.|.-.|.++..++.+++.+++.|+    .+.+.|..+|+-+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f~~~dAfd  199 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARFEQGDAFD  199 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEEEecCCCC
Confidence            4569999999999997776665532 25899999999999999999999999    6666999999753

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.21  E-value=1.3  Score=48.63  Aligned_cols=109  Identities=13%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             HhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCCCCCCCCcccc-CCcccCcHHHHHHHHHHhh--------hcCC-CCC
Q psy14969        530 VALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLE-NCSYLNSPSFIASSLEPAL--------LKLK-PGD  599 (687)
Q Consensus       530 VvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyqAYsD~pLPIG-~GqTISaP~VvAlLLElLk--------edLk-pG~  599 (687)
                      +++.+...|++.=.+.++..+.-|..-       -|.. ..++| .|-.+++|++-.+.-+.+.        .... ..-
T Consensus         8 ~~~~i~~~g~i~f~~fM~~~L~~p~~G-------YYs~-~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~   79 (370)
T COG1565           8 IRALIAQGGPISFSDFMELALYDPEHG-------YYSS-AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPL   79 (370)
T ss_pred             HHHHHhcCCCccHHHHHHHHHcCCCCc-------cccc-chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            446677888888888887766655331       2333 55666 4677888876443332221        1122 234


Q ss_pred             eEEEEcCCccHHHHHHHHhc---CC----CcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        600 TVLDVGTGSGYTAACLGYMV---RP----HGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       600 RVLDIGCGTGYLTAaLArLV---GP----~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      .++|||.|+|+++.-|.+.+   .|    ..+++-||+|+.+.+.-+++++...
T Consensus        80 ~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          80 KLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             eEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            79999999999998876654   22    4789999999999999999998875

>PRK13699 putative methylase; Provisional

Probab=91.49  E-value=0.88  Score=45.82  Aligned_cols=59  Identities=19%  Similarity=0.207  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      .+...++...   ..+|+.|||-=||||..+.+..++..   +.+|+|++++..+.|.++++...
T Consensus       151 ~l~~~~i~~~---s~~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        151 TSLQPLIESF---THPNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             HHHHHHHHHh---CCCCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHH
Confidence            3555555544   56899999999999977766555533   79999999999999999998754

>KOG4589|consensus

Probab=91.40  E-value=0.26  Score=50.53  Aligned_cols=38  Identities=37%  Similarity=0.566  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCH
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHME  632 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISp  632 (687)
                      +.|+.+|||+||..|.-+...-+.++|.|.|.|||+-.
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh  104 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH  104 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence            57899999999999999999999999999999999753

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=91.21  E-value=0.38  Score=48.86  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=42.7

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYM---VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV  654 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArL---VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR  654 (687)
                      +..|.-...+.+++. .+ +++.|+|+|.-.|..+..+|.+   +++.++|+|||++-.....  +.++....    ..+
T Consensus        15 ~q~P~Dm~~~qeli~-~~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~----~~r   86 (206)
T PF04989_consen   15 IQYPQDMVAYQELIW-EL-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPM----SPR   86 (206)
T ss_dssp             SS-HHHHHHHHHHHH-HH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--------TT
T ss_pred             hcCHHHHHHHHHHHH-Hh-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccc----cCc
Confidence            445655555555543 23 4579999999999999888764   4457899999997544322  22222333    479


Q ss_pred             EEEEEcCCC
Q psy14969        655 VNIMRTLPP  663 (687)
Q Consensus       655 I~LI~GDAe  663 (687)
                      |++++||..
T Consensus        87 I~~i~Gds~   95 (206)
T PF04989_consen   87 ITFIQGDSI   95 (206)
T ss_dssp             EEEEES-SS
T ss_pred             eEEEECCCC
Confidence            999999964

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.82  E-value=0.29  Score=49.63  Aligned_cols=71  Identities=21%  Similarity=0.247  Sum_probs=54.8

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----------
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----------  663 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----------  663 (687)
                      -+.+|++|+|+|+-.|.-+..+++.+++.+.|+|+|+.|--.           +     ..+.++++|..          
T Consensus        42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~-----~~V~~iq~d~~~~~~~~~l~~  105 (205)
T COG0293          42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------I-----PGVIFLQGDITDEDTLEKLLE  105 (205)
T ss_pred             eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------C-----CCceEEeeeccCccHHHHHHH
Confidence            357899999999999999999999998878899999986421           1     23666777643          


Q ss_pred             ---CCCccEEEEEecCCCcC
Q psy14969        664 ---QQDASRVNISVEPQKSG  680 (687)
Q Consensus       664 ---daPFDLILVVfAP~K~g  680 (687)
                         ..++|+|+...||--.|
T Consensus       106 ~l~~~~~DvV~sD~ap~~~g  125 (205)
T COG0293         106 ALGGAPVDVVLSDMAPNTSG  125 (205)
T ss_pred             HcCCCCcceEEecCCCCcCC
Confidence               34579999888884443

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=90.02  E-value=0.73  Score=47.62  Aligned_cols=82  Identities=21%  Similarity=0.277  Sum_probs=46.8

Q ss_pred             cCCCCC--eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH---HcCCC-ccCCCcEEEEEcCCCC---
Q psy14969        594 KLKPGD--TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR---KNHAH-LLDEGVVNIMRTLPPQ---  664 (687)
Q Consensus       594 dLkpG~--RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK---kaG~~-VaSsgRI~LI~GDAed---  664 (687)
                      .+++|.  +|||.-+|-|.-+..+|.. |  ++|+++|.+|.+....+.-++   ..... .....++.++.++...   
T Consensus        70 Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~  146 (234)
T PF04445_consen   70 GLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR  146 (234)
T ss_dssp             T-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred             CCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence            455654  8999999999999999976 4  489999999988666554443   32221 0113589999999764   


Q ss_pred             ---CCccEEEEEecCCCcC
Q psy14969        665 ---QDASRVNISVEPQKSG  680 (687)
Q Consensus       665 ---aPFDLILVVfAP~K~g  680 (687)
                         ..||+|..  +|+-..
T Consensus       147 ~~~~s~DVVY~--DPMFp~  163 (234)
T PF04445_consen  147 QPDNSFDVVYF--DPMFPE  163 (234)
T ss_dssp             CHSS--SEEEE----S---
T ss_pred             hcCCCCCEEEE--CCCCCC
Confidence               46787655  555443

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2651|consensus

Probab=89.21  E-value=0.84  Score=50.88  Aligned_cols=48  Identities=23%  Similarity=0.243  Sum_probs=39.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR  643 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK  643 (687)
                      +..+-+.|.|||.|-||++.+|+-..+  -.|+|||-+..+.+.|++--+
T Consensus       150 ~f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~rLdk  197 (476)
T KOG2651|consen  150 DFTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQRLDK  197 (476)
T ss_pred             hhcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHHHHH
Confidence            344667899999999999999997764  589999999888888776433

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=89.09  E-value=2.3  Score=47.58  Aligned_cols=84  Identities=12%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH--HHHHcCCCccCCCcEEEEEcCCC------CC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE--NIRKNHAHLLDEGVVNIMRTLPP------QQ  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK--NLKkaG~~VaSsgRI~LI~GDAe------da  665 (687)
                      .++...+||-+|-|-|--+..+.+.= .-.+|+-+|.+|.|++.|++  .++..+-...+..|+.++..|+-      ..
T Consensus       286 ~~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~  364 (508)
T COG4262         286 SVRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD  364 (508)
T ss_pred             cccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence            34567899999999998777776652 15799999999999999994  44444444566789999998864      34


Q ss_pred             CccEEEEEecCCC
Q psy14969        666 DASRVNISVEPQK  678 (687)
Q Consensus       666 PFDLILVVfAP~K  678 (687)
                      -||.+++..--+.
T Consensus       365 ~fD~vIVDl~DP~  377 (508)
T COG4262         365 MFDVVIVDLPDPS  377 (508)
T ss_pred             cccEEEEeCCCCC
Confidence            6999998854333

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=89.09  E-value=1.2  Score=47.01  Aligned_cols=74  Identities=15%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             HHHHHHHHhhhcCC-CCCeEEEEcCCc--cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        583 FIASSLEPALLKLK-PGDTVLDVGTGS--GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       583 VvAlLLElLkedLk-pG~RVLDIGCGT--GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      ...+....+.  -. .=...||||||-  --.+..+|+.+.|.++|+-+|++|-.+..|+.-+....     .++..++.
T Consensus        55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~  127 (267)
T PF04672_consen   55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQ  127 (267)
T ss_dssp             HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE
T ss_pred             HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEe
Confidence            3445555552  22 235799999993  34678889988899999999999999999999887764     24688888


Q ss_pred             cCCC
Q psy14969        660 TLPP  663 (687)
Q Consensus       660 GDAe  663 (687)
                      +|..
T Consensus       128 aD~r  131 (267)
T PF04672_consen  128 ADLR  131 (267)
T ss_dssp             --TT
T ss_pred             CCCC
Confidence            8864

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=88.96  E-value=1.8  Score=43.44  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=38.3

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCC-------CcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRP-------HGKVYSLDHMEYLVNFSKENIRKN  645 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP-------~GrVtGIDISpeAVE~ARKNLKka  645 (687)
                      .-+|+|+|.|+|.++.-+.+.+..       ..+++-||+|+.+.+.-++++...
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~   73 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEH   73 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhh
Confidence            359999999999999998876642       258999999999999999988763

; PDB: 4F3N_A 1ZKD_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=88.49  E-value=0.32  Score=50.69  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF  637 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~  637 (687)
                      .+|.+|||||+-||.+|-++.+...  .+|+|||+.-..+.+
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~  117 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHW  117 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCH
Confidence            4688999999999999999998853  499999998766554

>KOG0024|consensus

Probab=87.66  E-value=1.4  Score=48.07  Aligned_cols=46  Identities=22%  Similarity=0.337  Sum_probs=41.9

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .++.|.+||-+|+|+ |.+|...|+.++ ..+|+.+|+++..++.|++
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK  212 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH
Confidence            678999999999996 888888899987 5799999999999999988

>KOG1227|consensus

Probab=87.30  E-value=0.24  Score=53.45  Aligned_cols=75  Identities=21%  Similarity=0.283  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCccHHHH-HHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEE
Q psy14969        597 PGDTVLDVGTGSGYTAA-CLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVN  671 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTA-aLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLIL  671 (687)
                      .+..|.|+=+|-||+|. .+....  ...|+++|.+|.+++.-+++++.+++    ..+..++.||-.    ....|.|+
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~V----~~r~~i~~gd~R~~~~~~~AdrVn  267 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANNV----MDRCRITEGDNRNPKPRLRADRVN  267 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcch----HHHHHhhhccccccCccccchhee
Confidence            46899999999999999 554443  35999999999999999999999987    455556666633    34466666


Q ss_pred             EEecCC
Q psy14969        672 ISVEPQ  677 (687)
Q Consensus       672 VVfAP~  677 (687)
                      ...-|.
T Consensus       268 LGLlPS  273 (351)
T KOG1227|consen  268 LGLLPS  273 (351)
T ss_pred             eccccc
Confidence            655554

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=86.97  E-value=2.3  Score=47.50  Aligned_cols=71  Identities=13%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRP---HGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP---~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      |+..++.++...|++.+  .+.+..+|+|--||||.+....++.++.   ...++|.|+++.....|+-|+--+++
T Consensus       166 GEfyTP~~v~~liv~~l--~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi  239 (489)
T COG0286         166 GEFYTPREVSELIVELL--DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI  239 (489)
T ss_pred             CccCChHHHHHHHHHHc--CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC
Confidence            67777888999999888  4567789999999999998888877753   26799999999999999999998887

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=86.95  E-value=1.7  Score=38.87  Aligned_cols=43  Identities=23%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             EEcCCcc--HHHHHHH-HhcCCCcEEEEEeCCHHHHHHHHHH--HHHc
Q psy14969        603 DVGTGSG--YTAACLG-YMVRPHGKVYSLDHMEYLVNFSKEN--IRKN  645 (687)
Q Consensus       603 DIGCGTG--YLTAaLA-rLVGP~GrVtGIDISpeAVE~ARKN--LKka  645 (687)
                      |||+..|  ..+..+. +..++.++|+++|.+|..++..+++  +.-.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  6655553 2455688999999999999999998  5544

; PDB: 2PY6_A.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=86.83  E-value=0.77  Score=45.64  Aligned_cols=44  Identities=9%  Similarity=0.100  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhc-------CC-CcEEEEEeCCHHHHHHHHH
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMV-------RP-HGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLV-------GP-~GrVtGIDISpeAVE~ARK  640 (687)
                      +.-+|+.+||+||-=+-.||-++       .+ ..+|+|.|+|+.+++.|++
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            34599999999996433332221       11 3599999999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=86.58  E-value=1  Score=42.30  Aligned_cols=50  Identities=6%  Similarity=-0.065  Sum_probs=36.0

Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----ccEEEEEecCC
Q psy14969        626 YSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----ASRVNISVEPQ  677 (687)
Q Consensus       626 tGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FDLILVVfAP~  677 (687)
                      +|+|++++|++.|+++.+..+.  ....++.++.||+..+|     ||.|+..+.-.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~   55 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR   55 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhh
Confidence            4899999999999987764321  01246899999987654     78887766443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=85.75  E-value=0.73  Score=52.26  Aligned_cols=58  Identities=26%  Similarity=0.186  Sum_probs=34.8

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEE-----eCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSL-----DHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGI-----DISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      ..+||||||+|.+++.|...-     |+++     |..+..++.|.++---+-+.++...|++|..+.
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~  181 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNA  181 (506)
T ss_pred             EEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccc
Confidence            379999999999999988663     3333     344456666665411111123345666665544

; GO: 0008168 methyltransferase activity

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=85.74  E-value=2.4  Score=44.68  Aligned_cols=47  Identities=30%  Similarity=0.443  Sum_probs=39.7

Q ss_pred             CCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy14969        595 LKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI  642 (687)
Q Consensus       595 LkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNL  642 (687)
                      ..++.+|+-+|||+ |.+++.+++..+ ..+|+++|.++.-++.|++..
T Consensus       166 ~~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~  213 (350)
T COG1063         166 VRPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAG  213 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhC
Confidence            44555999999997 888888888886 569999999999999998853

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=85.15  E-value=2.5  Score=46.11  Aligned_cols=73  Identities=19%  Similarity=0.120  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCC-cEEEEEcCCC------CCCccE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG-VVNIMRTLPP------QQDASR  669 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsg-RI~LI~GDAe------daPFDL  669 (687)
                      .+-+|||.=+|||.-++.++..++...+|++-|+++++++..++|++-+++    .. ++.+...|+.      ...||+
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~----~~~~~~v~~~DAn~ll~~~~~~fD~  124 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL----EDERIEVSNMDANVLLYSRQERFDV  124 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-----SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc----cCceEEEehhhHHHHhhhccccCCE
Confidence            455899999999999999999854346999999999999999999999998    33 7888888853      455887


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |.+.
T Consensus       125 IDlD  128 (377)
T PF02005_consen  125 IDLD  128 (377)
T ss_dssp             EEE-
T ss_pred             EEeC
Confidence            7654

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=84.79  E-value=2.3  Score=43.70  Aligned_cols=43  Identities=16%  Similarity=-0.013  Sum_probs=36.3

Q ss_pred             eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                      +|+|+-||.|.++..+.++..  -.|+++|+++.+++..++|...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~   44 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPN   44 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCC
Confidence            699999999999988877642  3689999999999998888754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=83.38  E-value=1.6  Score=41.16  Aligned_cols=46  Identities=17%  Similarity=0.072  Sum_probs=32.4

Q ss_pred             HHHHHHHHhhh--cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCC
Q psy14969        583 FIASSLEPALL--KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHM  631 (687)
Q Consensus       583 VvAlLLElLke--dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDIS  631 (687)
                      +++.++++...  ...+.....|||||.|.+...|.+..-   .-+|+|.-
T Consensus        42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy---~G~GiD~R   89 (112)
T PF07757_consen   42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY---PGWGIDAR   89 (112)
T ss_pred             HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC---Cccccccc
Confidence            56666665432  112345799999999999999987754   56788864

; GO: 0008168 methyltransferase activity

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=82.79  E-value=1.3  Score=45.82  Aligned_cols=40  Identities=43%  Similarity=0.659  Sum_probs=36.1

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHH
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEY  633 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpe  633 (687)
                      .+++|++|+|+=.|.||+|..++..++|+|.|+++-..+.
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~   84 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL   84 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence            5789999999999999999999999999999999865543

>KOG3115|consensus

Probab=82.40  E-value=1.2  Score=46.35  Aligned_cols=48  Identities=19%  Similarity=0.266  Sum_probs=43.6

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      -.+.|||||-|.+...|+-+. |+--+.|+||--..-++.+.++..+..
T Consensus        62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~  109 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRR  109 (249)
T ss_pred             ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhc
Confidence            468999999999999999998 677999999999999999999998874

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=82.37  E-value=4.7  Score=42.34  Aligned_cols=43  Identities=12%  Similarity=-0.009  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCccH----HHHHHHHhcC----CCcEEEEEeCCHHHHHHHHH
Q psy14969        598 GDTVLDVGTGSGY----TAACLGYMVR----PHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       598 G~RVLDIGCGTGY----LTAaLArLVG----P~GrVtGIDISpeAVE~ARK  640 (687)
                      .-+|+-+||+||-    +|..|.+..+    ..-+|+|.|+|..+++.|+.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            5699999999993    2333334442    24789999999999999986

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=81.12  E-value=3.8  Score=42.96  Aligned_cols=47  Identities=28%  Similarity=0.448  Sum_probs=40.3

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      .+.++.+||.+|+|+ |..++.+|+..+ ..+|++++.+++..+.+++.
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence            577899999999998 889999999875 34699999999998888765

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2360|consensus

Probab=80.79  E-value=1.9  Score=47.88  Aligned_cols=63  Identities=17%  Similarity=0.339  Sum_probs=54.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      +..+|.+|+|+.|-.|.-|..+|....+.|+++|.|.++.-++.-++-++..|.     ..+..+.+|
T Consensus       210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-----~~~~~~~~d  272 (413)
T KOG2360|consen  210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-----SIVESVEGD  272 (413)
T ss_pred             CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-----Ccccccccc
Confidence            677889999999999999999999887789999999999999999999999886     234444555

>KOG2198|consensus

Probab=80.75  E-value=4.1  Score=45.03  Aligned_cols=85  Identities=24%  Similarity=0.285  Sum_probs=59.7

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHHHHcCC--CccCCCcEEEEEcC-------
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRP---HGKVYSLDHMEYLVNFSKENIRKNHA--HLLDEGVVNIMRTL-------  661 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP---~GrVtGIDISpeAVE~ARKNLKkaG~--~VaSsgRI~LI~GD-------  661 (687)
                      .+++|++|||+++..|.-|+.|.+.+-+   .|.|++=|+++.-+..-.+.+....-  ..+..+.+.+..+.       
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence            7899999999999999999988877632   35899999999988887777755543  11122223222222       


Q ss_pred             CCCCCccEEEEEecCCCc
Q psy14969        662 PPQQDASRVNISVEPQKS  679 (687)
Q Consensus       662 AedaPFDLILVVfAP~K~  679 (687)
                      ....-||.|++.+ ||-.
T Consensus       232 ~~~~~fDrVLvDV-PCS~  248 (375)
T KOG2198|consen  232 KEQLKFDRVLVDV-PCSG  248 (375)
T ss_pred             hhhhhcceeEEec-ccCC
Confidence            2445699999987 5543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=80.29  E-value=2.6  Score=44.51  Aligned_cols=44  Identities=11%  Similarity=0.102  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCccHHHHHH----HHhcC---CCcEEEEEeCCHHHHHHHHHH
Q psy14969        598 GDTVLDVGTGSGYTAACL----GYMVR---PHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaL----ArLVG---P~GrVtGIDISpeAVE~ARKN  641 (687)
                      .-+|+..||+||-=+-.|    .+..+   ...+|+|.|+++.+++.|++-
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            359999999999533222    23221   135799999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	687
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		2e-11
1r18_A	227	Drosophila Protein Isoaspartyl Methyltransferase Wi		1e-10
2pbf_A	227	Crystal Structure Of A Putative Protein-L-Isoaspart		5e-09
2yxe_A	215	Crystal Structure Of L-Isoaspartyl Protein Carboxyl		1e-06
3dh0_A	219	Crystal Structure Of A Sam Dependent Methyltransfer		5e-06
1jg4_A	235	Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-		1e-05

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 539 MYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           + KT ++ ++M+  DR  +     NPY D    +   + +++P   A +LE    +L  G
Sbjct: 21  IIKTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEG 78
Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
              LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct: 79  AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 138

>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 549 MIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGS 608
           M + DRK + P  RNPY D    +     +++P   A +LE     LKPG  +LDVG+GS
Sbjct: 38  MKETDRKHYSP--RNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGS 95
Query: 609 GYTAACLGYMVRPHG-----KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM----- 658
           GY  AC    ++  G     ++  ++H   LV  SK N+  +   +LD G + I+     
Sbjct: 96  GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR 155
Query: 659 RTLPPQQDASRVNI 672
           +  PP    + +++
Sbjct: 156 KGYPPNAPYNAIHV 169

>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 533 CVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPAL 592
            + + D+Y T      M++VDR  +      PY D  V + +   +++P   A SL+  +
Sbjct: 24  IIDDDDVYNT------MLQVDRGKYIK--EIPYIDTPVYISHGVTISAPHMHALSLKRLI 75
Query: 593 LKLKPGDTVLDVGTGSGYTAACLG----YMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
             LKPG   +DVG+GSGY   C+      +   +  V  L+ ++ LVNFS ENI+++   
Sbjct: 76  NVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE 135
Query: 649 LL 650
           LL
Sbjct: 136 LL 137

>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFI-ASSLEPALLKLKPGD 599
           K+K + D ++KV R++F P +   Y      LE   Y  + S I    +   LL LKPG 
Sbjct: 21  KSKRVIDALLKVPREEFLPEHLKEYAYVDTPLE-IGYGQTISAIHMVGMMCELLDLKPGM 79
Query: 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
            VL++GTG GY AA    +V   G V S++ +  L   ++  +RK
Sbjct: 80  KVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124

>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase From Aquifex Aeolicus Length = 219

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           LK G TVLDVGTG+G+    L  MV   GKVY++D  E +VN++ E + K
Sbjct: 35  LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK 84

>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF 637
           +++P  +A  LE A   LKPG  +L+VGTGSG+ AA +  +V+    VY+++ +  LV F
Sbjct: 74  VSAPHMVAIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEF 129
Query: 638 SKENIRK 644
           +K N+ +
Sbjct: 130 AKRNLER 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	687
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	1e-26
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	1e-24
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	3e-24
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	1e-23
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	9e-22
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	3e-21
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	1e-19
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	1e-19
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	1e-10
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	1e-09
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-08
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	2e-08
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-08
2b25_A	336	Hypothetical protein; structural genomics, methyl	4e-08
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	6e-08
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	1e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	6e-07
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	7e-07
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-06
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	1e-06
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-06
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	4e-06
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	7e-06
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	1e-05
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	1e-05
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	1e-05
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-05
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	2e-05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	2e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	9e-05
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	1e-04
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	1e-04
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	2e-04
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	2e-04
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	2e-04
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-04
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	2e-04
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	2e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	3e-04
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	3e-04
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	3e-04
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	3e-04
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	4e-04
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	4e-04
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	4e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	5e-04
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	5e-04
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	5e-04
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	6e-04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	7e-04

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score =  107 bits (270), Expect = 1e-26
 Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
           KT ++ ++M+  DR  +   N  PY D    +   + +++P   A +LE    +L  G  
Sbjct: 23  KTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 80

Query: 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI 657
            LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N+RK+   LL  G V +
Sbjct: 81  ALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 137

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score =  101 bits (254), Expect = 1e-24
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 7/122 (5%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
            +  +   M + DRK + P  RNPY D    +     +++P   A +LE     LKPG  
Sbjct: 30  ASDAVAQAMKETDRKHYSP--RNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGAR 87

Query: 601 VLDVGTGSGYTAACLGYMVRPHG-----KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
           +LDVG+GSGY  AC    ++  G     ++  ++H   LV  SK N+  +   +LD G +
Sbjct: 88  ILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 147

Query: 656 NI 657
            I
Sbjct: 148 LI 149

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score =  100 bits (252), Expect = 3e-24
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           K+K + D ++KV R++F P +     Y D  + +     +++   +    E  LL LKPG
Sbjct: 21  KSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCE--LLDLKPG 78

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
             VL++GTG GY AA    +V   G V S++ +  L   ++  +RK
Sbjct: 79  MKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score = 99.2 bits (248), Expect = 1e-23
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
              ++ + M++VDR  +      PY D  V + +   +++P   A SL+  +  LKPG  
Sbjct: 26  DDDDVYNTMLQVDRGKYIKEI--PYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSR 83

Query: 601 VLDVGTGSGYTAACL----GYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN 656
            +DVG+GSGY   C+      +   +  V  L+ ++ LVNFS ENI+++   LL      
Sbjct: 84  AIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK 143

Query: 657 I 657
           I
Sbjct: 144 I 144

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 95.6 bits (238), Expect = 9e-22
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 542 TKELRDLMIKVDRKDFCPPNRNP---YHDYSVMLENCSYLNS----PSFIASSLEPALLK 594
           +  +    +++ R++F   +      Y D  ++  +     S    PS +A  +E   + 
Sbjct: 15  SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFME--WVG 72

Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L  G  VL++G G+GY AA +  +V   G V S+++   +   +K N+ +
Sbjct: 73  LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER 122

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 92.3 bits (230), Expect = 3e-21
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           ++KE+    +K  R         +  + D  + +     +++P  +A  LE  +  LKPG
Sbjct: 35  RSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLE--IANLKPG 92

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
             +L+VGTGSG+ AA +  +V+    VY+++ +  LV F+K N+ +
Sbjct: 93  MNILEVGTGSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLER 136

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVML--ENCSYLNSPSFIASSLEPALLKLK 596
           KT+EL +   KVDR  F P N     Y      L         + +     L+   L L 
Sbjct: 12  KTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLD--ELDLH 69

Query: 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
            G  VL++GTG GY  A +  +V    KV S++  E + N++ + +  
Sbjct: 70  KGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY 114

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           + +++ + +  V R+ F      +  + + ++ +     ++ P  +A   E  LL+L P 
Sbjct: 21  QDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTE--LLELTPQ 78

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
             VL++GTGSGY  A L ++V     V S++ ++ L   ++  ++ 
Sbjct: 79  SRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN 121

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 19/84 (22%), Positives = 35/84 (41%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
           A   + PGD +++ G GSG     L  +V P G+V S +  E     + ENI+       
Sbjct: 87  AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDR 146

Query: 651 DEGVVNIMRTLPPQQDASRVNISV 674
               +  +     +++   V + +
Sbjct: 147 VTIKLKDIYEGIEEENVDHVILDL 170

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 562 RNPYHDYSVMLE---NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYM 618
                D  + ++      Y    SFIA      +L +K GD ++D G GSG   A L   
Sbjct: 79  IPSLIDEIMNMKRRTQIVYPKDSSFIAM-----MLDVKEGDRIIDTGVGSGAMCAVLARA 133

Query: 619 VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISV 674
           V   GKV++ +  E     ++ N+ K          V  +     ++D   + + V
Sbjct: 134 VGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV 189

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
                  G TVLD+G G+G        +V  HGKV  +D ++  +  +++ +  +     
Sbjct: 77  PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF 136

Query: 651 DEG 653
              
Sbjct: 137 GSP 139

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 27/52 (51%)

Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
           +K GDTV+D   G+G   A L  +V  +G+V+  D  +  +  + + +   +
Sbjct: 20  VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
               LK G TVLDVGTG+G+    L  MV   GKVY++D         +E +      + 
Sbjct: 31  KEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAID-------VQEEMVNYAWEKVN 83

Query: 651 DEGVVNI 657
             G+ N+
Sbjct: 84  KLGLKNV 90

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 15/110 (13%)

Query: 562 RNPYHDYSVMLE---NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYM 618
           R    DY V+++     ++    + I      +++ + PGDTVL+ G+GSG  +  L   
Sbjct: 72  RPALEDYVVLMKRGTAITFPKDINMIL-----SMMDINPGDTVLEAGSGSGGMSLFLSKA 126

Query: 619 VRPHGKVYSLDHMEYLVNFSKENIRK-------NHAHLLDEGVVNIMRTL 661
           V   G+V S +  +   + +K+N +        +H     + V  I + +
Sbjct: 127 VGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 176

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA--- 647
           + L  KP +T+ D+G GSG  A        P       +  E        N         
Sbjct: 19  SALAPKPHETLWDIGGGSGSIAIEWLRS-TPQTTAVCFEISEERRERILSNAINLGVSDR 77

Query: 648 HLLDEGVVNIMRTLPPQQDA 667
             + +G       +P   D 
Sbjct: 78  IAVQQGAPRAFDDVPDNPDV 97

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
               L+PG  +L+VG GSG  ++ + Y +   G +  ++  E  +  + +N+ + +
Sbjct: 104 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 159

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
            L +    D  +DVG G+G     L        +VY++D     ++ ++ N++++ 
Sbjct: 27  CLAEPGKNDVAVDVGCGTGGVTLELA---GRVRRVYAIDRNPEAISTTEMNLQRHG 79

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
            S L   + K+     ++D G G GY    L  ++    K   +D  E L+  ++E  R 
Sbjct: 10  VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 6/89 (6%)

Query: 564 PYHDYSVMLENCSYLNSPSFIASSLEPALLK------LKPGDTVLDVGTGSGYTAACLGY 617
           P       LE   Y   P+ +A+       +      L+PG  V  V  G       L Y
Sbjct: 79  PGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDY 138

Query: 618 MVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
              P  ++  +D+    ++ +      + 
Sbjct: 139 SACPGVQLVGIDYDPEALDGATRLAAGHA 167

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 26/56 (46%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
            LL L PG  VL+ GTGSG     L   V   G V S +   + +  ++ N+R   
Sbjct: 90  TLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW 145

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI 642
             +       ++D G G+G+      Y++    K+Y +D     +   KE  
Sbjct: 11  PNIFEGKKGVIVDYGCGNGFYCK---YLLEFATKLYCIDINVIALKEVKEKF 59

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
              ++KPG+ +L++G G G  +A L   V   G V  +D
Sbjct: 37  EAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 70/524 (13%), Positives = 150/524 (28%), Gaps = 157/524 (29%)

Query: 225 IRVNQPSIVMRSEDL----IEEMIKNQVFCIKLGDIVGCD------------FC--GKQL 266
           + V + + V   ++     +++M K+ +   ++  I+                    +++
Sbjct: 22  LSVFEDAFV---DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 267 LSKAVTSVEN-NF------CRSEKNSPNSKLSRYKDFIADRKQS--RKCPKKGISKADAE 317
           + K V  V   N+       ++E+  P+     Y +   DR  +  +   K  +S+   +
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRL--Q 135

Query: 318 IISSLKDCSYGLRD-RRV---------KTIPYENNRRSSLRINSNLKRKQIEDLPG---- 363
               L+     LR  + V         K         + + ++  L  K    +      
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGK---------TWVALDVCLSYKVQCKMDFKIFW 186

Query: 364 ---GNEKKSKS------TSCKVINHQAKDECLPQKGDLVRSDSSNESSQEMVEENQRPNS 414
               N    ++           I+              +R  S     + +++     N 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 415 ELKSQNENIAIVDSGRDCTSLEPLSVQ----------EVSHLKWHPSDSGDDAIHYYHPT 464
            L        ++ + ++  +    ++           +V+           D +     T
Sbjct: 247 LL--------VLLNVQNAKAWNAFNLSCKILLTTRFKQVT-----------DFLSAATTT 287

Query: 465 PLHQVLQENERGVILQYDGTYNLCQSNQHCDFTLRNTISFSSHFIFSR--KMKNTAVQ-- 520
             H  L  +                       T     S    ++  R   +    +   
Sbjct: 288 --HISLDHHSMT-------------------LTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 521 PL-LALVGMLVALCVSEFDMYKTKELRDL--MIKVDRKDFCPPN-RNPYHDYSVMLENCS 576
           P  L+++   +   ++ +D +K      L  +I+       P   R  +   SV   +  
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-- 384

Query: 577 YLNSPSFIASSLEPALLKL----KPGDTVLDVGTGSGYTAACLGY-MV--RPHGKVYSLD 629
             + P          LL L         V+ V            Y +V  +P     S+ 
Sbjct: 385 -AHIP--------TILLSLIWFDVIKSDVMVV------VNKLHKYSLVEKQPKESTISI- 428

Query: 630 HMEYLVNFSK-ENIRKNHAHLLDEGVVNIMRT------LPPQQD 666
              YL    K EN    H  ++D    NI +T      +PP  D
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 49/255 (19%), Positives = 87/255 (34%), Gaps = 55/255 (21%)

Query: 459 HYYHPTPLHQVLQENERGVILQYDGTYN-LCQSNQHC---DFTLRNTISFSSHFIFSRKM 514
           H++H    H   +  E     QY   Y  +    +     +F  ++        +   ++
Sbjct: 2   HHHH----HMDFETGE----HQY--QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51

Query: 515 KNTAVQP-----LLALVGMLVALCVSEFDMYKTKELRD----LMIKVDRKDFCP-PNRNP 564
            +  +        L L   L++        +  + LR     LM  +  +   P      
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 565 YHDYSVMLENCSYLNSPSFIA-----SSLEPALLKLKPGDTVLDVG-TGSGYT----AAC 614
           Y +    L N + + +   ++       L  ALL+L+P   VL  G  GSG T      C
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 615 LGYMVRPH--GKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD---ASR 669
           L Y V+     K++      +L N    N          E V+ +++ L  Q D    SR
Sbjct: 172 LSYKVQCKMDFKIF------WL-NLKNCNS--------PETVLEMLQKLLYQIDPNWTSR 216

Query: 670 VNISVE-PQKSGEIK 683
            + S     +   I+
Sbjct: 217 SDHSSNIKLRIHSIQ 231

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN---HAHLLD 651
           L     V+D   G+G   A   ++     KVY+ D  E  +  + + +      +  L+ 
Sbjct: 20  LDDESIVVDATMGNGNDTA---FLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELIL 76

Query: 652 EGVVNIMRTLPPQQDASRVNISVEPQKSGEIKFKAD 687
           +G  N+   +     A+  N+   P     +  K  
Sbjct: 77  DGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPH 112

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
             L L   D V+DVG GSG        + +    VY++D+++  +  +K+N+ K +    
Sbjct: 29  GKLNLNKDDVVVDVGCGSG-GMTV--EIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNC 85

Query: 651 DEGVVN-----IMRTLPP 663
              ++      ++  L  
Sbjct: 86  Q--IIKGRAEDVLDKLEF 101

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 24/61 (39%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
               + PG  VL+ G GSG     L   V P G+V S +        ++ N+   +    
Sbjct: 93  HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP 152

Query: 651 D 651
           D
Sbjct: 153 D 153

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 595 LKPGDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
           +    TV DVGTGSG     A  LG        V + D  +  +  ++EN   N 
Sbjct: 58  MVKPLTVADVGTGSGILAIAAHKLG-----AKSVLATDISDESMTAAEENAALNG 107

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDH----MEYLVNFSKENIRKN 645
           L +K GD +L +G  SG TA+ +  ++ P G++Y ++     M  L+   ++  R+N
Sbjct: 73  LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--RRN 127

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
             L L     VL+ GTGSG   A    +    G+V++ + +E     +++N++K +
Sbjct: 85  LKLNLNKEKRVLEFGTGSGALLA---VLSEVAGEVWTFEAVEEFYKTAQKNLKKFN 137

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 590 PALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL 649
                  PG  VL+ G G G     L     P  ++ S+D     +  ++EN        
Sbjct: 30  HHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTE------ 82

Query: 650 LDEGVVNI 657
              G+ N+
Sbjct: 83  -KNGIKNV 89

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 591 ALLKL-KPGDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
           AL +  +PGD VLD+GTGSG     A  LG      GK   +D    ++  ++ N ++N 
Sbjct: 113 ALARHLRPGDKVLDLGTGSGVLAIAAEKLG------GKALGVDIDPMVLPQAEANAKRNG 166

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           A L  + G+ + D+G GSG  +          G+  +++     +   ++NI  
Sbjct: 49  AALAPRRGELLWDIGGGSGSVSV---EWCLAGGRAITIEPRADRIENIQKNIDT 99

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
              + +    VLD+G G+G+TA      V    +   +D        +KE +    +   
Sbjct: 15  KTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVD-------ATKEMVEVASSFAQ 64

Query: 651 DEGVVNI 657
           ++GV N+
Sbjct: 65  EKGVENV 71

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 21/137 (15%)

Query: 509 IFSRKMKNTAVQPLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDY 568
                + +  +   L+L+         + +M K +E+ +     +           ++  
Sbjct: 52  SAKHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFY-----FYPR 106

Query: 569 SVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYS 627
            + L                E AL + + G+  + +G G    T   L ++     +V  
Sbjct: 107 YLEL-------------LKNEAALGRFRRGERAVFIGGGPLPLTGILLSHV--YGMRVNV 151

Query: 628 LDHMEYLVNFSKENIRK 644
           ++    +   S++ I  
Sbjct: 152 VEIEPDIAELSRKVIEG 168

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
           + L+L+    + D+G GS   +     ++ P+G++++L+     + F ++N++K  A 
Sbjct: 34  SKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVAR 90

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
           +L+       + D+G G+G     +   +    +V   +  + +  F++ ++        
Sbjct: 30  SLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF 88

Query: 651 DE 652
             
Sbjct: 89  SA 90

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L+ L     VL++G   GY+A  +   + P G++ + D        +K+  +K
Sbjct: 67  LISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK 119

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L+KL     V+D+GT +GY+A  +G  +   G + + D  E     +KE   K
Sbjct: 59  LVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK 111

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           +LKL      ++VG  +GY+       +   GK+ ++D            IRK
Sbjct: 65  VLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRK 117

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
               +  G T +D+G+G G  +  L    +    + +LD  +++   + +NI  
Sbjct: 38  NRFGITAG-TCIDIGSGPGALSIAL--AKQSDFSIRALDFSKHMNEIALKNIAD 88

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/53 (24%), Positives = 29/53 (54%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L++++    +L++GT  GY+   L   +   G+V +L+  E   + ++ NI +
Sbjct: 53  LVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER 105

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK-NHAHLL 650
           L K+     ++++GT +GY++ C    +   GK+   D  E   N +++  ++    + +
Sbjct: 55  LTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKI 114

Query: 651 DEGVVNIMRTLPPQQDASRVNISVEPQKSGEIKF 684
              + + + TL    D+            G    
Sbjct: 115 FLKLGSALETLQVLIDSKSAPSWASDFAFGPSSI 148

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 576 SYLNSPSFIASSLEP--ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
            Y +  SF+    E    LL  +PG+ +LD+G G+G     +    +   +V   D
Sbjct: 34  LYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKI---AQSGAEVLGTD 86

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
            +  LK  + VLDV TG G+ A      V    KV + D        +++ ++   A + 
Sbjct: 31  QIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFD-------LTEDILKVARAFIE 80

Query: 651 DEGVVNI 657
             G   +
Sbjct: 81  GNGHQQV 87

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L++L     VL++GT +GY+A  +   +   G+V + D  E     +    R+
Sbjct: 55  LIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE 107

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 9/53 (16%), Positives = 19/53 (35%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L ++K    V+  G G G  +      +    +V  +D     V  ++  +  
Sbjct: 51  LARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD 103

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L +L      LD+GT +GY+A  L   +   G+V + +         +   R+
Sbjct: 64  LARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ 116

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 28/53 (52%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           L++L     +L++GT  GY+   +   +   G++ +L+   +    ++EN++ 
Sbjct: 58  LVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL 110

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
           +  G  +LDVG+   Y    L           + + +E     + +N+  + 
Sbjct: 13  VSQGAILLDVGSDHAYLPIEL-VERGQIKSAIAGEVVEGPYQSAVKNVEAHG 63

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 5/54 (9%), Positives = 15/54 (27%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           A          + +   +G     +   +  +  +  +D        +K   R+
Sbjct: 50  ATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE 103

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
             +     TVLD G G       L   V    K Y ++  +  +  ++   R+N
Sbjct: 18  CNESNLDKTVLDCGAGGDLPP--LSIFVEDGYKTYGIEISDLQLKKAENFSREN 69

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           LLKL      +++G  +GY+       +   GK+ ++D  +         I+K
Sbjct: 74  LLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK 126

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
           L+     +  G  +LDVG+   Y    L   +       + + +      + +N+ ++ 
Sbjct: 12  LQKVANYVPKGARLLDVGSDHAYLPIFL-LQMGYCDFAIAGEVVNGPYQSALKNVSEHG 69

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 6/59 (10%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
           LE     +   + + D+G+   Y         +      + + ++     +++ +R + 
Sbjct: 12  LEKVASYITKNERIADIGSDHAYLPCFA-VKNQTASFAIAGEVVDGPFQSAQKQVRSSG 69

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 21/112 (18%)

Query: 539 MYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKL-KP 597
           M    +L   + K+              ++   LE   Y    S  A  L          
Sbjct: 4   MGIKNDLEIRLQKLQ----------QQGNFKNYLE--QYPTDASTAAYFLIEIYNDGNIG 51

Query: 598 GDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
           G +V+D GTG+G     +  LG        V + D     +  +K N    +
Sbjct: 52  GRSVIDAGTGNGILACGSYLLG-----AESVTAFDIDPDAIETAKRNCGGVN 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	687
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.87
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.86
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.81
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.8
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.75
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.73
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.7
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.67
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.42
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.28
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.24
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.22
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.17
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.16
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.16
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.15
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.14
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.14
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.14
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.14
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.14
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.13
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.12
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.11
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.11
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.11
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.1
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.1
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.09
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.09
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.09
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.08
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.08
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.07
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.06
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.04
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.04
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.03
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.03
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.03
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.03
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.01
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.01
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.0
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.0
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.99
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.99
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.98
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.98
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.98
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.98
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.97
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.96
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.96
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.95
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.95
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.94
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.94
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.94
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.93
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.93
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.93
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.93
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.92
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.92
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.92
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.92
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.91
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.91
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.91
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.9
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.9
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.9
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.9
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.89
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.89
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.89
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.89
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.88
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.88
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.88
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.88
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.87
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.87
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.87
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.86
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.86
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.85
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.85
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.85
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.84
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.83
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.83
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.83
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.83
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.82
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.82
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.82
3ocj_A	305	Putative exported protein; structural genomics, PS	98.82
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.81
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.81
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.81
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.81
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.8
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.8
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.79
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.79
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.79
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.79
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.78
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.78
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.78
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.78
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.78
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.78
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.77
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.77
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.76
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.76
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.76
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.75
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.75
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.75
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.75
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.74
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.74
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.73
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.73
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.73
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.73
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.72
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.71
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.71
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.71
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.71
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.71
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.71
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.71
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.7
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.7
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.7
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.69
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.69
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.67
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.67
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.67
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.67
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.66
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.66
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.66
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.66
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.65
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.65
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.65
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.64
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.64
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.64
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.64
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.63
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.63
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.63
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.62
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.62
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.62
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.62
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.61
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.61
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.61
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.6
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.6
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.59
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.59
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.59
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.58
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.58
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.58
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.57
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.57
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.56
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.56
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.56
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.56
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.56
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.55
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.55
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.55
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.55
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.54
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.54
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.54
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.54
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.52
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.52
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.52
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.52
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.51
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.49
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.49
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.49
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.49
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.48
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.47
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.46
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.46
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.46
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.46
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.46
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.45
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.45
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.44
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.44
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.44
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.4
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.39
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.39
2o07_A	304	Spermidine synthase; structural genomics, structur	98.39
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.37
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.37
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.37
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.36
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.36
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.35
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.35
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.35
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.35
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.34
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.34
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.33
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.32
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.32
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.32
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.32
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.32
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.31
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.3
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.3
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.29
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.28
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.28
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.27
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.25
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.2
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.2
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.17
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.17
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.16
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.14
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.12
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.12
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.12
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.11
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.1
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.06
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.94
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.93
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.91
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.91
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.85
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.84
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.84
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.83
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.81
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.74
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.74
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.74
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.74
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.73
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.68
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.64
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.63
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.63
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.63
3lkd_A	542	Type I restriction-modification system methyltrans	97.62
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.61
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.6
3khk_A	544	Type I restriction-modification system methylation	97.57
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.55
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.42
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.38
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.37
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.35
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.34
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.28
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.27
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.99
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.91
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.88
3ufb_A	530	Type I restriction-modification system methyltran	96.64
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.44
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	95.92
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.52
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	94.57
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.56
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	94.17
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.97
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	93.6
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	93.44
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	92.64
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	91.48
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	90.38
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	90.26
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	89.33
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	88.2
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	87.4
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	87.39
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	86.69
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	85.84
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	84.94
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	84.89
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	84.07
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	83.84
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	83.56
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	83.39
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	82.37
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	82.12
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	82.12
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	81.76
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	81.74
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	81.69
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	81.54
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	81.52
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	80.93
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	80.4
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	80.4
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	80.25

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.87  E-value=2.3e-21  Score=178.14  Aligned_cols=156  Identities=25%  Similarity=0.398  Sum_probs=127.8

Q ss_pred             ccCccCCC-chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCCCCCCCCccccCCcccCcHHHHHHHHHHh
Q psy14969        513 KMKNTAVQ-PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPA  591 (687)
Q Consensus       513 ~Mswrcsg-AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyqAYsD~pLPIG~GqTISaP~VvAlLLElL  591 (687)
                      .|+|+|++ +++.|+     ++|+..|.+.++.+.+||+.+||+.|+|..  +|.|.+++++.+++++.|.+.+.+++.+
T Consensus         2 ~~~w~~~~~~~~~~~-----~~l~~~~~~~~~~v~~~~~~~~r~~f~p~~--~y~d~~~~~~~~~~~~~p~~~~~~~~~l   74 (227)
T 2pbf_A            2 NNMYKLSENNHKSLL-----ENLKRRGIIDDDDVYNTMLQVDRGKYIKEI--PYIDTPVYISHGVTISAPHMHALSLKRL   74 (227)
T ss_dssp             -------CCCHHHHH-----HHHHHTTSCCCHHHHHHHHTSCGGGTCSSS--TTSSSCEEEETTEEECCHHHHHHHHHHH
T ss_pred             CcccccCchhHHHHH-----HHHHhcCCcCCHHHHHHHHhCCHHHcCCcc--cCCCCccccCCCCccCChHHHHHHHHHH
Confidence            48999999 777777     888888888999999999999999999984  8999999999999999999999999988


Q ss_pred             hhcCCCCCeEEEEcCCccHHHHHHHHhcC----CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---
Q psy14969        592 LLKLKPGDTVLDVGTGSGYTAACLGYMVR----PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---  664 (687)
Q Consensus       592 kedLkpG~RVLDIGCGTGYLTAaLArLVG----P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---  664 (687)
                      ...+.++.+|||||||+|+++..+++.++    |.++|+|+|+++.+++.|+++++..++..+...++.++.+|...   
T Consensus        75 ~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           75 INVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCH
T ss_pred             HhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccc
Confidence            54578899999999999999999999876    66799999999999999999999887211123578999988654   


Q ss_pred             ------CCccEEEEEec
Q psy14969        665 ------QDASRVNISVE  675 (687)
Q Consensus       665 ------aPFDLILVVfA  675 (687)
                            .+||+|++...
T Consensus       155 ~~~~~~~~fD~I~~~~~  171 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGAS  171 (227)
T ss_dssp             HHHHHHCCEEEEEECSB
T ss_pred             ccCccCCCcCEEEECCc
Confidence                  35898876543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.86  E-value=1.7e-21  Score=180.54  Aligned_cols=156  Identities=26%  Similarity=0.417  Sum_probs=131.2

Q ss_pred             ccCccCCC-chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCCCCCCCCccccCCcccCcHHHHHHHHHHh
Q psy14969        513 KMKNTAVQ-PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPA  591 (687)
Q Consensus       513 ~Mswrcsg-AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyqAYsD~pLPIG~GqTISaP~VvAlLLElL  591 (687)
                      .|.|+|++ +++.|+     ++|+..|++.++.+.+||+.+||+.|+|..  +|.|.+++++++++++.|.+++.+++.+
T Consensus         6 ~m~~~~~~~~~~~l~-----~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~--~y~d~~~~~~~~~~~~~p~~~~~~~~~l   78 (227)
T 1r18_A            6 HMAWRSVGANNEDLI-----RQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVTISAPHMHAFALEYL   78 (227)
T ss_dssp             CCCCCCBCSSHHHHH-----HHHHHTTSCCCHHHHHHHHTSCGGGTCSSC--TTBSSCEEEETTEEECCHHHHHHHHHHT
T ss_pred             eeeeecCccHHHHHH-----HHHHhcCCCCCHHHHHHHHhCCHHHcCCcc--cccCCCcccCCCCccCChHHHHHHHHHH
Confidence            48999998 777777     888899988999999999999999999984  9999999999999999999999999988


Q ss_pred             hhcCCCCCeEEEEcCCccHHHHHHHHhcCC-----CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--
Q psy14969        592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRP-----HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--  664 (687)
Q Consensus       592 kedLkpG~RVLDIGCGTGYLTAaLArLVGP-----~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--  664 (687)
                      ...+.++.+|||||||+|++++.+++..+.     .++|+++|+++.+++.|++++...+...+...++.++.+|...  
T Consensus        79 ~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  158 (227)
T 1r18_A           79 RDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY  158 (227)
T ss_dssp             TTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred             HhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC
Confidence            545788999999999999999999997642     3599999999999999999998765100001468888888543  


Q ss_pred             ---CCccEEEEEec
Q psy14969        665 ---QDASRVNISVE  675 (687)
Q Consensus       665 ---aPFDLILVVfA  675 (687)
                         .+||+|++...
T Consensus       159 ~~~~~fD~I~~~~~  172 (227)
T 1r18_A          159 PPNAPYNAIHVGAA  172 (227)
T ss_dssp             GGGCSEEEEEECSC
T ss_pred             CcCCCccEEEECCc
Confidence               57998876543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.81  E-value=2.2e-19  Score=164.94  Aligned_cols=153  Identities=27%  Similarity=0.408  Sum_probs=129.5

Q ss_pred             CccCCC-chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCCCCCCCCccccCCcccCcHHHHHHHHHHhhh
Q psy14969        515 KNTAVQ-PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALL  593 (687)
Q Consensus       515 swrcsg-AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyqAYsD~pLPIG~GqTISaP~VvAlLLElLke  593 (687)
                      +|+|++ ++++++     ++|++.|++.++.+.+||..+||+.|++..  +|.+.+.+++.+.+++.|.+.+.+++.+..
T Consensus         1 ~~~~~~~~~~~l~-----~~l~~~g~~~~~~~~~a~~~~~r~~f~~~~--~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~   73 (226)
T 1i1n_A            1 AWKSGGASHSELI-----HNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALELLFD   73 (226)
T ss_dssp             -CCCCCSSHHHHH-----HHHHHTTSCCSHHHHHHHHTSCGGGTCSSC--TTSSSCEEEETTEEECCHHHHHHHHHHTTT
T ss_pred             CcCcCCchHHHHH-----HHHHHcCCcCCHHHHHHHHhCCHHHcCCCc--cCCCCccccCCCceecCHHHHHHHHHHHHh
Confidence            588998 677777     889999988899999999999999999874  899999999999999999999999998843


Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFD  668 (687)
                      .+.++.+|||||||+|+.+..+++.+++.++|+|+|+++.+++.|++++...++......++.++.+|..     ..+||
T Consensus        74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  153 (226)
T 1i1n_A           74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  153 (226)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence            4778999999999999999999998766679999999999999999999886531111247888888854     35689


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++..
T Consensus       154 ~i~~~~  159 (226)
T 1i1n_A          154 AIHVGA  159 (226)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            887654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.80  E-value=9.1e-19  Score=158.76  Aligned_cols=139  Identities=18%  Similarity=0.274  Sum_probs=122.8

Q ss_pred             hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEc
Q psy14969        528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVG  605 (687)
Q Consensus       528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIG  605 (687)
                      .|++++|+..| +.++++.++|+.+||+.|+|..  ..+|.+.+++++.+.+++.|.+.+.+++.+  .+.++.+|||||
T Consensus         9 ~~~~~~l~~~g-v~~~~~~~~~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vLdiG   85 (210)
T 3lbf_A            9 QALLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELL--ELTPQSRVLEIG   85 (210)
T ss_dssp             HHHHHHHHHTT-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHT--TCCTTCEEEEEC
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHhCCHHHcCCcchhhhccCCCccccCCCCEeCCHHHHHHHHHhc--CCCCCCEEEEEc
Confidence            34569999999 7999999999999999999986  458999999999999999999999999988  688899999999


Q ss_pred             CCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEEEEEecCC
Q psy14969        606 TGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRVNISVEPQ  677 (687)
Q Consensus       606 CGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLILVVfAP~  677 (687)
                      ||+|+++..+++..   ++|+|+|+++.+++.|+++++..++     .++.++.+|...     .+||+|++.....
T Consensus        86 ~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~  154 (210)
T 3lbf_A           86 TGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDL-----HNVSTRHGDGWQGWQARAPFDAIIVTAAPP  154 (210)
T ss_dssp             CTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred             CCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCC-----CceEEEECCcccCCccCCCccEEEEccchh
Confidence            99999999999884   4999999999999999999999886     368999988643     5699998865443

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.75  E-value=9.9e-18  Score=152.46  Aligned_cols=139  Identities=24%  Similarity=0.331  Sum_probs=121.0

Q ss_pred             HhHHhhch-hcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEE
Q psy14969        527 GMLVALCV-SEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLD  603 (687)
Q Consensus       527 NlMVvQqL-RsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLD  603 (687)
                      ..|+ ++| +.+| +.+++|.+||+.+||+.|++..  ..+|.+.+.+++.++++..|.+.+.+++.+  .+.++.+|||
T Consensus         8 ~~~~-~~l~~~~~-~~~~~v~~a~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLd   83 (215)
T 2yxe_A            8 KAVI-EKLIREGY-IKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELL--DLKPGMKVLE   83 (215)
T ss_dssp             HHHH-HHHHHHTS-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHT--TCCTTCEEEE
T ss_pred             HHHH-HHhHHhcC-CCCHHHHHHHHhCCHHHcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhh--CCCCCCEEEE
Confidence            3445 778 9999 8999999999999999999987  358999999999999999999999999887  6788999999


Q ss_pred             EcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEe
Q psy14969        604 VGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISV  674 (687)
Q Consensus       604 IGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVf  674 (687)
                      ||||+|+++..+++..++.++|+++|+++.+++.|++++...++     .++.+..++..     ..+||+|++..
T Consensus        84 iG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~v~~~~  154 (215)
T 2yxe_A           84 IGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-----DNVIVIVGDGTLGYEPLAPYDRIYTTA  154 (215)
T ss_dssp             ECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             ECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEECCcccCCCCCCCeeEEEECC
Confidence            99999999999999986667999999999999999999998876     35888888753     34689887654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.73  E-value=1.8e-17  Score=154.71  Aligned_cols=135  Identities=24%  Similarity=0.357  Sum_probs=118.1

Q ss_pred             hchhcCCCCCCHHHHHHHHhCCCccCCCCCC--CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCcc
Q psy14969        532 LCVSEFDMYKTKELRDLMIKVDRKDFCPPNR--NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSG  609 (687)
Q Consensus       532 QqLRsnG~IdS~EV~qAMraVPReaFVP~gy--qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTG  609 (687)
                      ++|+..+.+.++.+.+||..+||+.|+|..+  .+|.+.+.+++.+.+++.|.+.+.+++.+  .+.++.+|||||||+|
T Consensus        26 ~~l~~~~~~~~~~~~~a~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vLdiG~G~G  103 (235)
T 1jg1_A           26 EMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIA--NLKPGMNILEVGTGSG  103 (235)
T ss_dssp             HHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHH--TCCTTCCEEEECCTTS
T ss_pred             HHHHhcCCCCCHHHHHHHHhCCHhhhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhc--CCCCCCEEEEEeCCcC
Confidence            6688666689999999999999999999873  58999999999999999999999999988  6888999999999999


Q ss_pred             HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEec
Q psy14969        610 YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVE  675 (687)
Q Consensus       610 YLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfA  675 (687)
                      +++..+++..+  ++|+++|+++.+++.|+++++..++     .++.++.+|..     ..+||+|++...
T Consensus       104 ~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~  167 (235)
T 1jg1_A          104 WNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV-----KNVHVILGDGSKGFPPKAPYDVIIVTAG  167 (235)
T ss_dssp             HHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             HHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEECCcccCCCCCCCccEEEECCc
Confidence            99999999984  5899999999999999999999886     35888888842     235898877654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.70  E-value=9.6e-17  Score=158.07  Aligned_cols=138  Identities=20%  Similarity=0.288  Sum_probs=121.1

Q ss_pred             hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCC---CCCCCCc-cccCC---cccCcHHHHHHHHHHhhhcCCCCCe
Q psy14969        528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRN---PYHDYSV-MLENC---SYLNSPSFIASSLEPALLKLKPGDT  600 (687)
Q Consensus       528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyq---AYsD~pL-PIG~G---qTISaP~VvAlLLElLkedLkpG~R  600 (687)
                      .|++++|+.+| +.+ ++.+||+.+||+.|+++...   +|.+.+. +++.+   +.++.|.+.+.+++.+  .+.++.+
T Consensus         3 ~~~~~~l~~~g-i~~-~v~~a~~~vpr~~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l--~~~~~~~   78 (317)
T 1dl5_A            3 EKLFWILKKYG-VSD-HIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWV--GLDKGMR   78 (317)
T ss_dssp             HHHHHHHHHTT-CCH-HHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHT--TCCTTCE
T ss_pred             HHHHHHHHHcC-ChH-HHHHHHHhCCHHHhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhc--CCCCcCE
Confidence            35669999999 788 99999999999999998744   8888888 99999   9999999999999988  6889999


Q ss_pred             EEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEEEEEe
Q psy14969        601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRVNISV  674 (687)
Q Consensus       601 VLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLILVVf  674 (687)
                      |||||||+|+++..+++..++.++|+|+|+++.+++.|+++++..++     .++.++.+|...     .+||+|++..
T Consensus        79 VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-----~~v~~~~~d~~~~~~~~~~fD~Iv~~~  152 (317)
T 1dl5_A           79 VLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-----ENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (317)
T ss_dssp             EEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             EEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCeEEEECChhhccccCCCeEEEEEcC
Confidence            99999999999999999875457899999999999999999999886     358999988653     4689887764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.67  E-value=2.1e-16  Score=145.18  Aligned_cols=129  Identities=23%  Similarity=0.286  Sum_probs=111.9

Q ss_pred             hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCC--CCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEE
Q psy14969        528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYH--DYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLD  603 (687)
Q Consensus       528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYs--D~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLD  603 (687)
                      .|++++|+      +++|++||..+||+.|++..  ..+|.  +.+.+++.++.+..|.+.+.+++.+  .+.++.+|||
T Consensus         5 ~~~~~~~~------~~~v~~a~~~v~r~~f~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vLd   76 (231)
T 1vbf_A            5 EEILRKIK------TQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDEL--DLHKGQKVLE   76 (231)
T ss_dssp             HHHHHHCC------CHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHT--TCCTTCEEEE
T ss_pred             HHHHHHhC------CHHHHHHHHhCCHHHcCCcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhc--CCCCCCEEEE
Confidence            57788887      89999999999999999987  34899  9999999999999999999999988  6788999999


Q ss_pred             EcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEEEEEe
Q psy14969        604 VGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRVNISV  674 (687)
Q Consensus       604 IGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLILVVf  674 (687)
                      ||||+|+++..+++..   ++|+|+|+++.+++.|++++...+       ++.++.+|...     .+||+|++..
T Consensus        77 iG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~-------~v~~~~~d~~~~~~~~~~fD~v~~~~  142 (231)
T 1vbf_A           77 IGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN-------NIKLILGDGTLGYEEEKPYDRVVVWA  142 (231)
T ss_dssp             ECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS-------SEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             EcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC-------CeEEEECCcccccccCCCccEEEECC
Confidence            9999999999999886   499999999999999999987653       67888887543     4589887653

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.42  E-value=5.7e-14  Score=132.20  Aligned_cols=146  Identities=16%  Similarity=0.206  Sum_probs=99.8

Q ss_pred             ccccccchhhhcccccccchhhcccCccCCC------chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCC
Q psy14969        490 SNQHCDFTLRNTISFSSHFIFSRKMKNTAVQ------PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRN  563 (687)
Q Consensus       490 m~~~CPlc~~~L~s~sk~LLLSr~Mswrcsg------AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyq  563 (687)
                      |++.||.|+..+....        -.|.|.+      ++.+|++.++++......+..+.++..+     |..|...++ 
T Consensus         1 m~~~Cp~C~~~~~~~~--------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-   66 (269)
T 1p91_A            1 MSFSCPLCHQPLSREK--------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMMQA-----RRAFLDAGH-   66 (269)
T ss_dssp             -CBBCTTTCCBCEEET--------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSSHHHHHH-----HHHHHTTTT-
T ss_pred             CcccCCCCCccceeCC--------CEEECCCCCcCCcCCCEEEEeecccccCCCCCCCCHHHHHH-----HHHHHhCCC-
Confidence            5689999999886644        3577766      5678887777666555555677777777     333443311 


Q ss_pred             CCCCCCccccCCcccCcHHHHHHHHHHhhhcC-CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy14969        564 PYHDYSVMLENCSYLNSPSFIASSLEPALLKL-KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI  642 (687)
Q Consensus       564 AYsD~pLPIG~GqTISaP~VvAlLLElLkedL-kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNL  642 (687)
                       |.              | +...+.+.+...+ .++.+|||||||+|.++..+++.. +.++|+|+|+++.+++.|+++.
T Consensus        67 -~~--------------~-~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~  129 (269)
T 1p91_A           67 -YQ--------------P-LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY  129 (269)
T ss_dssp             -TH--------------H-HHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC
T ss_pred             -cH--------------H-HHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC
Confidence             11              1 2222333322122 578899999999999999999886 3579999999999999998864


Q ss_pred             HHcCCCccCCCcEEEEEcCCCC-----CCccEEEEEecC
Q psy14969        643 RKNHAHLLDEGVVNIMRTLPPQ-----QDASRVNISVEP  676 (687)
Q Consensus       643 KkaG~~VaSsgRI~LI~GDAed-----aPFDLILVVfAP  676 (687)
                                .++.++.++...     ..||+|+....+
T Consensus       130 ----------~~~~~~~~d~~~~~~~~~~fD~v~~~~~~  158 (269)
T 1p91_A          130 ----------PQVTFCVASSHRLPFSDTSMDAIIRIYAP  158 (269)
T ss_dssp             ----------TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred             ----------CCcEEEEcchhhCCCCCCceeEEEEeCCh
Confidence                      145667777654     348988876554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.28  E-value=1.2e-11  Score=122.14  Aligned_cols=125  Identities=22%  Similarity=0.283  Sum_probs=97.6

Q ss_pred             HHHHhCCCccCCCCC-------CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhc
Q psy14969        547 DLMIKVDRKDFCPPN-------RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMV  619 (687)
Q Consensus       547 qAMraVPReaFVP~g-------yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLV  619 (687)
                      +++...+|+.|.+..       ...|.+..+++..+..+..|...+.+++.+  .+.++.+|||||||+|+++..+++.+
T Consensus        50 ~~ig~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~g~~VLDiG~G~G~~~~~la~~~  127 (336)
T 2b25_A           50 KIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAV  127 (336)
T ss_dssp             HHTTCCTTEEEECTTSCEEEEECCCHHHHHHHSCCSSCCCCHHHHHHHHHHH--TCCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred             HHcCCCCCceEEeCCCcEEEecCCCHHHHhhhhcCCCcccCHHHHHHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHh
Confidence            445556788777654       234556666788888999999999999888  68899999999999999999999987


Q ss_pred             CCCcEEEEEeCCHHHHHHHHHHHHHcC----CCcc--CCCcEEEEEcCCCCC-------CccEEEEE
Q psy14969        620 RPHGKVYSLDHMEYLVNFSKENIRKNH----AHLL--DEGVVNIMRTLPPQQ-------DASRVNIS  673 (687)
Q Consensus       620 GP~GrVtGIDISpeAVE~ARKNLKkaG----~~Va--SsgRI~LI~GDAeda-------PFDLILVV  673 (687)
                      ++.++|+|+|+++.+++.|+++++..+    +.-+  ...++.++.+|....       +||+|++.
T Consensus       128 g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  194 (336)
T 2b25_A          128 GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD  194 (336)
T ss_dssp             CTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEEC
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCCCeeEEEEC
Confidence            667899999999999999999998743    1000  024789999987542       48888764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.24  E-value=6.4e-12  Score=132.93  Aligned_cols=133  Identities=14%  Similarity=0.151  Sum_probs=100.5

Q ss_pred             hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC-CCCC--------------CCCCccccCCcccCcHHHHHHHHHHhh
Q psy14969        528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN-RNPY--------------HDYSVMLENCSYLNSPSFIASSLEPAL  592 (687)
Q Consensus       528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g-yqAY--------------sD~pLPIG~GqTISaP~VvAlLLElLk  592 (687)
                      +|++++|+..| |.+  +++||..|||+.+ ... ..+|              ... -+.+.|.++  |.+++.+++.+ 
T Consensus       167 ~~~~~~Lr~~~-I~~--vl~a~~~vPr~~~-e~il~~aY~~~l~P~~~~l~~Y~~~-s~~~yGet~--p~~v~~ml~~l-  238 (433)
T 1u2z_A          167 NKMIREIPRQR-IID--HLETIDKIPRSFI-HDFLHIVYTRSIHPQANKLKHYKAF-SNYVYGELL--PNFLSDVYQQC-  238 (433)
T ss_dssp             HHHHTTSCHHH-HHH--HHTTCCEEEHHHH-HHHHHHHHHHHTGGGGGGGCSCCSS-GGGCCCCBC--HHHHHHHHHHT-
T ss_pred             HHHHHHHhhcc-HHH--HHHHHHhCCHHHH-HHHHHHHHHhhccccHHHHHHhhhc-ccccccccc--HHHHHHHHHhc-
Confidence            35568899988 433  8999999999863 211 1122              221 135666665  88899999887 


Q ss_pred             hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-------HHHHHHcCCCccCCCcEEEEEcCCC--
Q psy14969        593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFS-------KENIRKNHAHLLDEGVVNIMRTLPP--  663 (687)
Q Consensus       593 edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~A-------RKNLKkaG~~VaSsgRI~LI~GDAe--  663 (687)
                       .+.++.+|||||||+|++++.+|+..+ ..+|+|||+++.+++.|       +++++..++   ...++.++.++..  
T Consensus       239 -~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl---~~~nV~~i~gD~~~~  313 (433)
T 1u2z_A          239 -QLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGM---RLNNVEFSLKKSFVD  313 (433)
T ss_dssp             -TCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB---CCCCEEEEESSCSTT
T ss_pred             -CCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC---CCCceEEEEcCcccc
Confidence             688999999999999999999999874 46899999999999999       888888874   0157999987543  


Q ss_pred             -------CCCccEEEEE
Q psy14969        664 -------QQDASRVNIS  673 (687)
Q Consensus       664 -------daPFDLILVV  673 (687)
                             ..+||+|++.
T Consensus       314 ~~~~~~~~~~FDvIvvn  330 (433)
T 1u2z_A          314 NNRVAELIPQCDVILVN  330 (433)
T ss_dssp             CHHHHHHGGGCSEEEEC
T ss_pred             ccccccccCCCCEEEEe
Confidence                   2469999864

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.22  E-value=7.9e-11  Score=114.78  Aligned_cols=88  Identities=18%  Similarity=0.206  Sum_probs=71.1

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      ++..+..++...+++|.+|||||||||..+..|++.+. ++.+|+|||+++.|++.|+++++..+.    ..++.++++|
T Consensus        56 ~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~----~~~v~~~~~D  131 (261)
T 4gek_A           56 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGD  131 (261)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc----CceEEEeecc
Confidence            44444444333588999999999999999999998864 456999999999999999999998876    6689999999


Q ss_pred             CCCCC---ccEEEEEe
Q psy14969        662 PPQQD---ASRVNISV  674 (687)
Q Consensus       662 AedaP---FDLILVVf  674 (687)
                      ....|   ||+|+..+
T Consensus       132 ~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A          132 IRDIAIENASMVVLNF  147 (261)
T ss_dssp             TTTCCCCSEEEEEEES
T ss_pred             cccccccccccceeee
Confidence            87655   67776553

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.17  E-value=1e-10  Score=107.09  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=71.0

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .|.....+...+  ...++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..++    ..++.++.
T Consensus        49 ~~~~~~~l~~l~--~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~  122 (225)
T 3tr6_A           49 APEQAQLLALLV--KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL----SDKIGLRL  122 (225)
T ss_dssp             CHHHHHHHHHHH--HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred             CHHHHHHHHHHH--HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEe
Confidence            344444433333  344788999999999999999999875578999999999999999999999987    56799999


Q ss_pred             cCCCC-----------CCccEEEEEe
Q psy14969        660 TLPPQ-----------QDASRVNISV  674 (687)
Q Consensus       660 GDAed-----------aPFDLILVVf  674 (687)
                      +++..           .+||+|++..
T Consensus       123 ~d~~~~~~~~~~~~~~~~fD~v~~~~  148 (225)
T 3tr6_A          123 SPAKDTLAELIHAGQAWQYDLIYIDA  148 (225)
T ss_dssp             SCHHHHHHHHHTTTCTTCEEEEEECS
T ss_pred             CCHHHHHHHhhhccCCCCccEEEECC
Confidence            98631           5799887654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.16  E-value=4.3e-10  Score=104.40  Aligned_cols=89  Identities=16%  Similarity=0.188  Sum_probs=76.1

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      .++.+.+.+.+++.+  .+.++.+|||||||+|+++..+++..   ++|+|+|+++.+++.|+++++..++    .+++.
T Consensus        37 ~~~~~~~~~~~l~~l--~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v~  107 (204)
T 3njr_A           37 QITKSPMRALTLAAL--APRRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGL----SPRMR  107 (204)
T ss_dssp             CCCCHHHHHHHHHHH--CCCTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC----TTTEE
T ss_pred             CCCcHHHHHHHHHhc--CCCCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCC----CCCEE
Confidence            456677888888877  68889999999999999999999883   5999999999999999999999987    44799


Q ss_pred             EEEcCCCC-----CCccEEEEEe
Q psy14969        657 IMRTLPPQ-----QDASRVNISV  674 (687)
Q Consensus       657 LI~GDAed-----aPFDLILVVf  674 (687)
                      ++.+|+..     .+||.|++..
T Consensus       108 ~~~~d~~~~~~~~~~~D~v~~~~  130 (204)
T 3njr_A          108 AVQGTAPAALADLPLPEAVFIGG  130 (204)
T ss_dssp             EEESCTTGGGTTSCCCSEEEECS
T ss_pred             EEeCchhhhcccCCCCCEEEECC
Confidence            99999765     2689887654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.16  E-value=2.3e-10  Score=102.69  Aligned_cols=77  Identities=21%  Similarity=0.326  Sum_probs=67.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPF  667 (687)
                      .++++.+|||+|||+|..+..+++.+++.++|+|+|+++.+++.|+++++..++    ..++.++.+|+..      ..|
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~f   94 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL----IDRVTLIKDGHQNMDKYIDCPV   94 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC----GGGEEEECSCGGGGGGTCCSCE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEEECCHHHHhhhccCCc
Confidence            578899999999999999999999986678999999999999999999999876    5689999999543      458


Q ss_pred             cEEEEEe
Q psy14969        668 SRVNISV  674 (687)
Q Consensus       668 DLILVVf  674 (687)
                      |+|+...
T Consensus        95 D~v~~~~  101 (197)
T 3eey_A           95 KAVMFNL  101 (197)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEcC
Confidence            9887664

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.15  E-value=8.1e-11  Score=108.94  Aligned_cols=90  Identities=11%  Similarity=0.123  Sum_probs=72.1

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .|.....+...+  ...++.+|||||||+|+.+..+|+.+++.++|+++|+++.+++.|+++++..++    .+++.++.
T Consensus        43 ~~~~~~~l~~l~--~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~  116 (221)
T 3u81_A           43 GDAKGQIMDAVI--REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL----QDKVTILN  116 (221)
T ss_dssp             CHHHHHHHHHHH--HHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEE
T ss_pred             CHHHHHHHHHHH--HhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC----CCceEEEE
Confidence            344444444433  344788999999999999999999876678999999999999999999999987    56799999


Q ss_pred             cCCCC-----------CCccEEEEEec
Q psy14969        660 TLPPQ-----------QDASRVNISVE  675 (687)
Q Consensus       660 GDAed-----------aPFDLILVVfA  675 (687)
                      +|+..           .+||+|++...
T Consensus       117 ~d~~~~l~~~~~~~~~~~fD~V~~d~~  143 (221)
T 3u81_A          117 GASQDLIPQLKKKYDVDTLDMVFLDHW  143 (221)
T ss_dssp             SCHHHHGGGTTTTSCCCCCSEEEECSC
T ss_pred             CCHHHHHHHHHHhcCCCceEEEEEcCC
Confidence            99521           47999987653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.14  E-value=4.1e-10  Score=102.22  Aligned_cols=88  Identities=23%  Similarity=0.425  Sum_probs=75.3

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      +...+.+.++..+  .+.++.+|||||||+|+++..+++.. |.++|+|+|+++.+++.|+++++..++     .++.++
T Consensus        24 ~~~~i~~~~l~~l--~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~   95 (204)
T 3e05_A           24 TKQEVRAVTLSKL--RLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVA-----RNVTLV   95 (204)
T ss_dssp             CCHHHHHHHHHHT--TCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTC-----TTEEEE
T ss_pred             ChHHHHHHHHHHc--CCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEE
Confidence            5667778888877  68889999999999999999999986 578999999999999999999999886     579999


Q ss_pred             EcCCCC-----CCccEEEEEe
Q psy14969        659 RTLPPQ-----QDASRVNISV  674 (687)
Q Consensus       659 ~GDAed-----aPFDLILVVf  674 (687)
                      .++...     ..||+|+...
T Consensus        96 ~~d~~~~~~~~~~~D~i~~~~  116 (204)
T 3e05_A           96 EAFAPEGLDDLPDPDRVFIGG  116 (204)
T ss_dssp             ECCTTTTCTTSCCCSEEEESC
T ss_pred             eCChhhhhhcCCCCCEEEECC
Confidence            998742     4589887654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.14  E-value=1.4e-10  Score=108.84  Aligned_cols=91  Identities=15%  Similarity=0.245  Sum_probs=75.6

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|.+...+...+  ...++.+|||||||+|+.+..+++.. +.++|+|+|+++.+++.|+++++..++    ..++.++
T Consensus        55 ~~~~~~~~l~~~~--~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~  127 (232)
T 3ntv_A           55 VDRLTLDLIKQLI--RMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHF----ENQVRII  127 (232)
T ss_dssp             CCHHHHHHHHHHH--HHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEE
T ss_pred             cCHHHHHHHHHHH--hhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEE
Confidence            4566777776665  45578899999999999999999865 578999999999999999999999987    5689999


Q ss_pred             EcCCCC-------CCccEEEEEecC
Q psy14969        659 RTLPPQ-------QDASRVNISVEP  676 (687)
Q Consensus       659 ~GDAed-------aPFDLILVVfAP  676 (687)
                      .+|+..       .+||+|++...+
T Consensus       128 ~~d~~~~~~~~~~~~fD~V~~~~~~  152 (232)
T 3ntv_A          128 EGNALEQFENVNDKVYDMIFIDAAK  152 (232)
T ss_dssp             ESCGGGCHHHHTTSCEEEEEEETTS
T ss_pred             ECCHHHHHHhhccCCccEEEEcCcH
Confidence            999743       469999877543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.14  E-value=3.8e-11  Score=114.95  Aligned_cols=91  Identities=18%  Similarity=0.207  Sum_probs=74.1

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|.....+..++  ...++.+|||||||+|+.|..||+.+++.++|+++|+++.+++.|+++++..++    ..++.++
T Consensus        44 i~~~~~~~l~~l~--~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~  117 (242)
T 3r3h_A           44 VAPEQAQFMQMLI--RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ----EHKIKLR  117 (242)
T ss_dssp             CCHHHHHHHHHHH--HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC----TTTEEEE
T ss_pred             cCHHHHHHHHHHH--hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEE
Confidence            3444444444433  345778999999999999999999886678999999999999999999999987    6789999


Q ss_pred             EcCCC-----------CCCccEEEEEec
Q psy14969        659 RTLPP-----------QQDASRVNISVE  675 (687)
Q Consensus       659 ~GDAe-----------daPFDLILVVfA  675 (687)
                      .||+.           ..+||+|++...
T Consensus       118 ~gda~~~l~~~~~~~~~~~fD~V~~d~~  145 (242)
T 3r3h_A          118 LGPALDTLHSLLNEGGEHQFDFIFIDAD  145 (242)
T ss_dssp             ESCHHHHHHHHHHHHCSSCEEEEEEESC
T ss_pred             EcCHHHHHHHHhhccCCCCEeEEEEcCC
Confidence            99973           267999988754

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.14  E-value=1.2e-10  Score=106.70  Aligned_cols=77  Identities=19%  Similarity=0.350  Sum_probs=67.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----------
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------  664 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------  664 (687)
                      ..++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..++    ..++.++.+++..          
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~  131 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL----NDRVEVRTGLALDSLQQIENEKY  131 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHHHHhcCC
Confidence            45788999999999999999999985478999999999999999999999987    5679999999742          


Q ss_pred             CCccEEEEEec
Q psy14969        665 QDASRVNISVE  675 (687)
Q Consensus       665 aPFDLILVVfA  675 (687)
                      .+||+|++...
T Consensus       132 ~~fD~v~~d~~  142 (223)
T 3duw_A          132 EPFDFIFIDAD  142 (223)
T ss_dssp             CCCSEEEECSC
T ss_pred             CCcCEEEEcCC
Confidence            56999987653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.14  E-value=2.2e-10  Score=101.98  Aligned_cols=79  Identities=15%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             HHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---
Q psy14969        588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---  664 (687)
Q Consensus       588 LElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---  664 (687)
                      ...+...+.++.+|||||||+|+++..+++..   ++|+|+|+++.|++.|+++++..++     .++.++.++...   
T Consensus        13 ~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~~~~~l~~   84 (185)
T 3mti_A           13 HDFLAEVLDDESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGI-----ENTELILDGHENLDH   84 (185)
T ss_dssp             HHHHHTTCCTTCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTC-----CCEEEEESCGGGGGG
T ss_pred             HHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCcHHHHHh
Confidence            33343357889999999999999999999873   5999999999999999999999875     578888876433   


Q ss_pred             ---CCccEEEEEe
Q psy14969        665 ---QDASRVNISV  674 (687)
Q Consensus       665 ---aPFDLILVVf  674 (687)
                         .+||+|+...
T Consensus        85 ~~~~~fD~v~~~~   97 (185)
T 3mti_A           85 YVREPIRAAIFNL   97 (185)
T ss_dssp             TCCSCEEEEEEEE
T ss_pred             hccCCcCEEEEeC
Confidence               4599987664

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.13  E-value=2.4e-10  Score=99.88  Aligned_cols=89  Identities=18%  Similarity=0.159  Sum_probs=74.2

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      ++.+.+.+.+++.+  .+.++.+|||||||+|+++..+++.. +.++|+|+|+++.+++.|+++++..++    ..++ +
T Consensus         8 ~t~~~~~~~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~-~   79 (178)
T 3hm2_A            8 LTKQHVRALAISAL--APKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGV----SDRI-A   79 (178)
T ss_dssp             SHHHHHHHHHHHHH--CCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTC----TTSE-E
T ss_pred             ccHHHHHHHHHHHh--cccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCC----CCCE-E
Confidence            45566778888877  67888999999999999999999886 468999999999999999999999887    4478 7


Q ss_pred             EEcCCC----C--CCccEEEEEe
Q psy14969        658 MRTLPP----Q--QDASRVNISV  674 (687)
Q Consensus       658 I~GDAe----d--aPFDLILVVf  674 (687)
                      +.+++.    .  ..||+|++..
T Consensus        80 ~~~d~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           80 VQQGAPRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             EECCTTGGGGGCCSCCSEEEECC
T ss_pred             EecchHhhhhccCCCCCEEEECC
Confidence            778763    2  5699887654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.12  E-value=1.1e-10  Score=112.07  Aligned_cols=91  Identities=12%  Similarity=0.131  Sum_probs=73.7

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|.....+..++  ...++.+|||||||+||.+..+++.+++.++|+++|+++.+++.|+++++..++    ..++.++
T Consensus        63 ~~~~~~~ll~~l~--~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~i~~~  136 (247)
T 1sui_A           63 TSADEGQFLSMLL--KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFR  136 (247)
T ss_dssp             CCHHHHHHHHHHH--HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEE
T ss_pred             cCHHHHHHHHHHH--HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEE
Confidence            4555555444433  345678999999999999999999985578999999999999999999999887    5689999


Q ss_pred             EcCCC------------CCCccEEEEEec
Q psy14969        659 RTLPP------------QQDASRVNISVE  675 (687)
Q Consensus       659 ~GDAe------------daPFDLILVVfA  675 (687)
                      .|++.            ..+||+|++...
T Consensus       137 ~gda~~~l~~l~~~~~~~~~fD~V~~d~~  165 (247)
T 1sui_A          137 EGPALPVLDEMIKDEKNHGSYDFIFVDAD  165 (247)
T ss_dssp             ESCHHHHHHHHHHSGGGTTCBSEEEECSC
T ss_pred             ECCHHHHHHHHHhccCCCCCEEEEEEcCc
Confidence            99863            357999988654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.11  E-value=6.8e-10  Score=102.95  Aligned_cols=86  Identities=15%  Similarity=0.132  Sum_probs=72.9

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .+.....+++.+  .+.++.+|||||||+|.++..+++..+  ++|+|+|+++.+++.|+++++..++    ..++.++.
T Consensus        21 ~~~~~~~l~~~~--~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~----~~~v~~~~   92 (256)
T 1nkv_A           21 TEEKYATLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGV----SERVHFIH   92 (256)
T ss_dssp             CHHHHHHHHHHT--CCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred             CHHHHHHHHHhc--CCCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEE
Confidence            455677777776  678899999999999999999998864  5899999999999999999999887    56899999


Q ss_pred             cCCCCC----CccEEEEE
Q psy14969        660 TLPPQQ----DASRVNIS  673 (687)
Q Consensus       660 GDAeda----PFDLILVV  673 (687)
                      +|+...    .||+|+..
T Consensus        93 ~d~~~~~~~~~fD~V~~~  110 (256)
T 1nkv_A           93 NDAAGYVANEKCDVAACV  110 (256)
T ss_dssp             SCCTTCCCSSCEEEEEEE
T ss_pred             CChHhCCcCCCCCEEEEC
Confidence            998654    47888764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.11  E-value=1.6e-10  Score=108.16  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=76.7

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      .+..|...+.+...+  ...++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..++    ..++.
T Consensus        42 ~~~~~~~~~~l~~l~--~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~v~  115 (239)
T 2hnk_A           42 MQISPEEGQFLNILT--KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL----ENKIF  115 (239)
T ss_dssp             CSCCHHHHHHHHHHH--HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEE
T ss_pred             cccCHHHHHHHHHHH--HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCEE
Confidence            456777777777665  456788999999999999999999975467999999999999999999999887    45699


Q ss_pred             EEEcCCCC----------------------CCccEEEEEec
Q psy14969        657 IMRTLPPQ----------------------QDASRVNISVE  675 (687)
Q Consensus       657 LI~GDAed----------------------aPFDLILVVfA  675 (687)
                      ++.+++..                      .+||+|++.+.
T Consensus       116 ~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          116 LKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD  156 (239)
T ss_dssp             EEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC
T ss_pred             EEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC
Confidence            99988532                      57999987643

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.11  E-value=3.2e-10  Score=105.19  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=76.0

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..|.+...+...+  ...++.+|||||||+|+.+..+++.. |.++|+++|+++.+++.|+++++..++    ..++.+
T Consensus        37 ~~~~~~~~~l~~~~--~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~  109 (233)
T 2gpy_A           37 IMDLLGMESLLHLL--KMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGL----ESRIEL  109 (233)
T ss_dssp             CCCHHHHHHHHHHH--HHHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEE
T ss_pred             CcCHHHHHHHHHHH--hccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEE
Confidence            45677777777666  45678899999999999999999987 467999999999999999999999887    567999


Q ss_pred             EEcCCCC--------CCccEEEEEec
Q psy14969        658 MRTLPPQ--------QDASRVNISVE  675 (687)
Q Consensus       658 I~GDAed--------aPFDLILVVfA  675 (687)
                      +.+++..        .+||+|++...
T Consensus       110 ~~~d~~~~~~~~~~~~~fD~I~~~~~  135 (233)
T 2gpy_A          110 LFGDALQLGEKLELYPLFDVLFIDAA  135 (233)
T ss_dssp             ECSCGGGSHHHHTTSCCEEEEEEEGG
T ss_pred             EECCHHHHHHhcccCCCccEEEECCC
Confidence            9988643        46999887653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.10  E-value=2.8e-10  Score=107.78  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC-CcEEEEEcCCC-------CCCccE
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE-GVVNIMRTLPP-------QQDASR  669 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs-gRI~LI~GDAe-------daPFDL  669 (687)
                      +.+|||||||+|+.+..||+.++++++|+++|+++.+++.|+++++..++    . .++.++.|++.       ..+||+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~~i~~~~gda~~~l~~~~~~~fD~  132 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY----SPSRVRFLLSRPLDVMSRLANDSYQL  132 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC----CGGGEEEECSCHHHHGGGSCTTCEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CcCcEEEEEcCHHHHHHHhcCCCcCe
Confidence            44999999999999999999886678999999999999999999999987    5 68999999852       357999


Q ss_pred             EEEEecC
Q psy14969        670 VNISVEP  676 (687)
Q Consensus       670 ILVVfAP  676 (687)
                      |++....
T Consensus       133 V~~d~~~  139 (221)
T 3dr5_A          133 VFGQVSP  139 (221)
T ss_dssp             EEECCCT
T ss_pred             EEEcCcH
Confidence            9876543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.10  E-value=9.5e-11  Score=111.81  Aligned_cols=92  Identities=10%  Similarity=-0.026  Sum_probs=72.7

Q ss_pred             cCCcccCc-HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q psy14969        573 ENCSYLNS-PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYM---VRPHGKVYSLDHMEYLVNFSKENIRKNHAH  648 (687)
Q Consensus       573 G~GqTISa-P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArL---VGP~GrVtGIDISpeAVE~ARKNLKkaG~~  648 (687)
                      ..+..++. |.+...+.+.+  ...++.+|||||||+|+.|+.||+.   +.+.++|+|||+++.+++.|+      +. 
T Consensus        58 ~~~~~~~~~p~~~~~l~~~l--~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~-  128 (236)
T 2bm8_A           58 WRGLRMLKDPDTQAVYHDML--WELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD-  128 (236)
T ss_dssp             ETTEECCSCHHHHHHHHHHH--HHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG-
T ss_pred             cccccccCCHHHHHHHHHHH--HhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc-
Confidence            34556666 88888887776  3346789999999999999999998   456789999999999998887      11 


Q ss_pred             ccCCCcEEEEEcCCCCC---------CccEEEEEecC
Q psy14969        649 LLDEGVVNIMRTLPPQQ---------DASRVNISVEP  676 (687)
Q Consensus       649 VaSsgRI~LI~GDAeda---------PFDLILVVfAP  676 (687)
                         ..++.++.||+...         +||+|++..+.
T Consensus       129 ---~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~  162 (236)
T 2bm8_A          129 ---MENITLHQGDCSDLTTFEHLREMAHPLIFIDNAH  162 (236)
T ss_dssp             ---CTTEEEEECCSSCSGGGGGGSSSCSSEEEEESSC
T ss_pred             ---CCceEEEECcchhHHHHHhhccCCCCEEEECCch
Confidence               25799999997652         69999887653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.09  E-value=6.6e-10  Score=103.82  Aligned_cols=89  Identities=26%  Similarity=0.330  Sum_probs=75.2

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|...+.++..+  .+.++.+|||+|||+|.++..+++.++|.++|+|+|+++.+++.|+++++..++    .+++.++
T Consensus        77 ~~~~~~~~i~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~v~~~  150 (255)
T 3mb5_A           77 VHPKDAALIVAYA--GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF----DDRVTIK  150 (255)
T ss_dssp             CCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC----TTTEEEE
T ss_pred             ccHhHHHHHHHhh--CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC----CCceEEE
Confidence            3455667777776  688999999999999999999999976778999999999999999999999887    5669999


Q ss_pred             EcCCC----CCCccEEEEE
Q psy14969        659 RTLPP----QQDASRVNIS  673 (687)
Q Consensus       659 ~GDAe----daPFDLILVV  673 (687)
                      .+|..    ...||+|+..
T Consensus       151 ~~d~~~~~~~~~~D~v~~~  169 (255)
T 3mb5_A          151 LKDIYEGIEEENVDHVILD  169 (255)
T ss_dssp             CSCGGGCCCCCSEEEEEEC
T ss_pred             ECchhhccCCCCcCEEEEC
Confidence            98864    3458888763

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.09  E-value=3.6e-10  Score=106.37  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=71.2

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .|.....+...+  ...++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..++    ..++.++.
T Consensus        57 ~~~~~~~l~~l~--~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~  130 (232)
T 3cbg_A           57 SPEQAQFLGLLI--SLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV----AEKISLRL  130 (232)
T ss_dssp             CHHHHHHHHHHH--HHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEE
T ss_pred             CHHHHHHHHHHH--HhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEE
Confidence            444444444333  344678999999999999999999875578999999999999999999999887    56799999


Q ss_pred             cCCCC-----------CCccEEEEEec
Q psy14969        660 TLPPQ-----------QDASRVNISVE  675 (687)
Q Consensus       660 GDAed-----------aPFDLILVVfA  675 (687)
                      +++..           .+||+|++...
T Consensus       131 ~d~~~~l~~l~~~~~~~~fD~V~~d~~  157 (232)
T 3cbg_A          131 GPALATLEQLTQGKPLPEFDLIFIDAD  157 (232)
T ss_dssp             SCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred             cCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence            98521           57999887653

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.09  E-value=2e-10  Score=109.37  Aligned_cols=76  Identities=17%  Similarity=0.282  Sum_probs=66.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------CC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------QD  666 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------aP  666 (687)
                      +.++.+|||||||+|+.+..+|+.+++.++|+|+|+++.+++.|+++++..++    ..++.++.+|+..        .+
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~~l~~~~~~~~  136 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV----DQRVTLREGPALQSLESLGECPA  136 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHTCCSCCC
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHhcCCCCC
Confidence            45789999999999999999999885578999999999999999999999987    5689999998632        37


Q ss_pred             ccEEEEEe
Q psy14969        667 ASRVNISV  674 (687)
Q Consensus       667 FDLILVVf  674 (687)
                      ||+|++..
T Consensus       137 fD~V~~d~  144 (248)
T 3tfw_A          137 FDLIFIDA  144 (248)
T ss_dssp             CSEEEECS
T ss_pred             eEEEEECC
Confidence            99998765

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.08  E-value=1.4e-09  Score=94.51  Aligned_cols=88  Identities=22%  Similarity=0.285  Sum_probs=73.0

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      ....+.+...+++.+  .+.++.+|||||||+|.++..+++   +..+|+|+|+++.+++.|+++++..++     .++.
T Consensus        17 ~~~~~~~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~   86 (183)
T 2yxd_A           17 PITKEEIRAVSIGKL--NLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNI-----KNCQ   86 (183)
T ss_dssp             CCCCHHHHHHHHHHH--CCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTC-----CSEE
T ss_pred             CcCHHHHHHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC-----CcEE
Confidence            345667888888877  677889999999999999999997   356999999999999999999999876     4689


Q ss_pred             EEEcCCC----CCCccEEEEEe
Q psy14969        657 IMRTLPP----QQDASRVNISV  674 (687)
Q Consensus       657 LI~GDAe----daPFDLILVVf  674 (687)
                      ++.++..    ...||+|+...
T Consensus        87 ~~~~d~~~~~~~~~~D~i~~~~  108 (183)
T 2yxd_A           87 IIKGRAEDVLDKLEFNKAFIGG  108 (183)
T ss_dssp             EEESCHHHHGGGCCCSEEEECS
T ss_pred             EEECCccccccCCCCcEEEECC
Confidence            9988853    24689887653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.08  E-value=3.6e-10  Score=110.44  Aligned_cols=77  Identities=14%  Similarity=0.078  Sum_probs=66.3

Q ss_pred             hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-C---C-Cc
Q psy14969        593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-Q---Q-DA  667 (687)
Q Consensus       593 edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-d---a-PF  667 (687)
                      ..+++|.+|||||||+||+++.+|+.. |.++|+|+|+++.+++.|++|++.+++    .+++.+..+|.. .   . +|
T Consensus        11 ~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl----~~~i~~~~~d~l~~l~~~~~~   85 (225)
T 3kr9_A           11 SFVSQGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGL----KEKIQVRLANGLAAFEETDQV   85 (225)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCCGGGCC
T ss_pred             HhCCCCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECchhhhcccCcCC
Confidence            346788999999999999999999875 567999999999999999999999998    678999999963 1   2 59


Q ss_pred             cEEEEEe
Q psy14969        668 SRVNISV  674 (687)
Q Consensus       668 DLILVVf  674 (687)
                      |.|++..
T Consensus        86 D~IviaG   92 (225)
T 3kr9_A           86 SVITIAG   92 (225)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEcC
Confidence            9887643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.07  E-value=3.9e-10  Score=110.79  Aligned_cols=76  Identities=13%  Similarity=0.109  Sum_probs=65.8

Q ss_pred             hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCc
Q psy14969        593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDA  667 (687)
Q Consensus       593 edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPF  667 (687)
                      ..+++|.+|||||||+||+++.+++.. +.++|+|+|+++.+++.|++|++.+++    .+++.+..||...     .+|
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl----~~~I~~~~gD~l~~~~~~~~~   91 (230)
T 3lec_A           17 NYVPKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGL----TSKIDVRLANGLSAFEEADNI   91 (230)
T ss_dssp             TTSCTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCCGGGCC
T ss_pred             HhCCCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhcccccccc
Confidence            357788999999999999999999885 567999999999999999999999998    6789999999542     258


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |.|++.
T Consensus        92 D~Ivia   97 (230)
T 3lec_A           92 DTITIC   97 (230)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            987653

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.06  E-value=1.2e-09  Score=102.61  Aligned_cols=87  Identities=13%  Similarity=0.132  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhhhcCC----CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        581 PSFIASSLEPALLKLK----PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       581 P~VvAlLLElLkedLk----pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      |.+..++...+ ..+.    ++.+|||||||+|.++..+++.. +.++|+|+|+++.|++.|+++++..++    .+++.
T Consensus        46 ~~~~~~~~~~~-~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~  119 (254)
T 2h00_A           46 LNYIHWVEDLI-GHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNL----SDLIK  119 (254)
T ss_dssp             HHHHHHHHHHH-CCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEE
T ss_pred             HHHHHHHHHHH-hhccccCCCCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCC----CccEE
Confidence            55554544444 2222    57799999999999999998876 357999999999999999999999887    56799


Q ss_pred             EEEcCCCC-----------CCccEEEEE
Q psy14969        657 IMRTLPPQ-----------QDASRVNIS  673 (687)
Q Consensus       657 LI~GDAed-----------aPFDLILVV  673 (687)
                      ++.+|+..           ..||+|+..
T Consensus       120 ~~~~d~~~~~~~~~~~~~~~~fD~i~~n  147 (254)
T 2h00_A          120 VVKVPQKTLLMDALKEESEIIYDFCMCN  147 (254)
T ss_dssp             EEECCTTCSSTTTSTTCCSCCBSEEEEC
T ss_pred             EEEcchhhhhhhhhhcccCCcccEEEEC
Confidence            99988432           258988654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.04  E-value=5.3e-10  Score=110.82  Aligned_cols=76  Identities=7%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCc
Q psy14969        593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDA  667 (687)
Q Consensus       593 edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPF  667 (687)
                      ..+++|.+|||||||+||+++.+++.. +.++|+|+|+++.+++.|++|++.+++    .+++.+..||...     .+|
T Consensus        17 ~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl----~~~I~v~~gD~l~~~~~~~~~   91 (244)
T 3gnl_A           17 SYITKNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGL----TEQIDVRKGNGLAVIEKKDAI   91 (244)
T ss_dssp             TTCCSSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCCGGGCC
T ss_pred             HhCCCCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEecchhhccCccccc
Confidence            357788999999999999999999885 567999999999999999999999998    6789999998542     248


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |.|++.
T Consensus        92 D~Ivia   97 (244)
T 3gnl_A           92 DTIVIA   97 (244)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            988764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.04  E-value=1.3e-09  Score=100.19  Aligned_cols=90  Identities=18%  Similarity=0.252  Sum_probs=69.3

Q ss_pred             cCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccC
Q psy14969        573 ENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD  651 (687)
Q Consensus       573 G~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaS  651 (687)
                      ..+..++.|.....++..   .+.++.+||||||| +|.++..+++..  .++|+|+|+++.+++.|++++...++    
T Consensus        34 ~~~~~~p~~~~~~l~~~~---~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~----  104 (230)
T 3evz_A           34 HPKGLVTTPISRYIFLKT---FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS----  104 (230)
T ss_dssp             CTTSCCCCHHHHHHHHHT---TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC----
T ss_pred             CCCeEeCCCchhhhHhHh---hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC----
Confidence            334445556553332333   36789999999999 999999999885  35999999999999999999999875    


Q ss_pred             CCcEEEEEcCCC------CCCccEEEEE
Q psy14969        652 EGVVNIMRTLPP------QQDASRVNIS  673 (687)
Q Consensus       652 sgRI~LI~GDAe------daPFDLILVV  673 (687)
                        ++.++.+|+.      ...||+|+..
T Consensus       105 --~v~~~~~d~~~~~~~~~~~fD~I~~n  130 (230)
T 3evz_A          105 --NVRLVKSNGGIIKGVVEGTFDVIFSA  130 (230)
T ss_dssp             --CCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred             --CcEEEeCCchhhhhcccCceeEEEEC
Confidence              7888888842      2458988754

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.03  E-value=7.2e-10  Score=101.71  Aligned_cols=90  Identities=17%  Similarity=0.168  Sum_probs=71.9

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|.....+...+  ...++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..++    ..++.++
T Consensus        53 ~~~~~~~~l~~l~--~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~i~~~  126 (229)
T 2avd_A           53 MTCEQAQLLANLA--RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKIDLR  126 (229)
T ss_dssp             CCHHHHHHHHHHH--HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTEEEE
T ss_pred             cCHHHHHHHHHHH--HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CCeEEEE
Confidence            3454555444433  455788999999999999999999875468999999999999999999999887    5689999


Q ss_pred             EcCCCC-----------CCccEEEEEe
Q psy14969        659 RTLPPQ-----------QDASRVNISV  674 (687)
Q Consensus       659 ~GDAed-----------aPFDLILVVf  674 (687)
                      .+++..           ..||+|++..
T Consensus       127 ~~d~~~~~~~~~~~~~~~~~D~v~~d~  153 (229)
T 2avd_A          127 LKPALETLDELLAAGEAGTFDVAVVDA  153 (229)
T ss_dssp             ESCHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred             EcCHHHHHHHHHhcCCCCCccEEEECC
Confidence            998631           5799887754

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.03  E-value=1.4e-09  Score=102.91  Aligned_cols=96  Identities=19%  Similarity=0.236  Sum_probs=78.3

Q ss_pred             cCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-C-CCcc
Q psy14969        573 ENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-H-AHLL  650 (687)
Q Consensus       573 G~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-G-~~Va  650 (687)
                      ..+..+..|...+.++..+  .+.++.+|||||||+|.++..+++.++|.++|+++|+++.+++.|+++++.. + +   
T Consensus        77 ~~~~~~~~~~~~~~i~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~---  151 (280)
T 1i9g_A           77 PRGPQVIYPKDAAQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP---  151 (280)
T ss_dssp             CSCSCCCCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC---
T ss_pred             cccceeecHHHHHHHHHHc--CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC---
Confidence            3444556787888888877  6889999999999999999999998766789999999999999999999887 4 2   


Q ss_pred             CCCcEEEEEcCCCC-----CCccEEEEEe
Q psy14969        651 DEGVVNIMRTLPPQ-----QDASRVNISV  674 (687)
Q Consensus       651 SsgRI~LI~GDAed-----aPFDLILVVf  674 (687)
                       ..++.++.+|...     ..||+|++..
T Consensus       152 -~~~v~~~~~d~~~~~~~~~~~D~v~~~~  179 (280)
T 1i9g_A          152 -PDNWRLVVSDLADSELPDGSVDRAVLDM  179 (280)
T ss_dssp             -CTTEEEECSCGGGCCCCTTCEEEEEEES
T ss_pred             -CCcEEEEECchHhcCCCCCceeEEEECC
Confidence             2578888888643     3588887743

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.03  E-value=6.9e-10  Score=101.44  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=64.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CC-ccEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QD-ASRV  670 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aP-FDLI  670 (687)
                      .++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..++    ..++.++.+++..    .+ ||+|
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~v  130 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL----IDRVELQVGDPLGIAAGQRDIDIL  130 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG----GGGEEEEESCHHHHHTTCCSEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CceEEEEEecHHHHhccCCCCCEE
Confidence            4678999999999999999999875478999999999999999999999886    5679999998631    12 8988


Q ss_pred             EEEec
Q psy14969        671 NISVE  675 (687)
Q Consensus       671 LVVfA  675 (687)
                      ++...
T Consensus       131 ~~~~~  135 (210)
T 3c3p_A          131 FMDCD  135 (210)
T ss_dssp             EEETT
T ss_pred             EEcCC
Confidence            87643

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.03  E-value=9.2e-10  Score=104.40  Aligned_cols=90  Identities=18%  Similarity=0.147  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .|.....+...+  ...++.+|||||||+|+.+..+++.+++.++|+++|+++.+++.|+++++..++    ..++.++.
T Consensus        55 ~~~~~~~l~~l~--~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~  128 (237)
T 3c3y_A           55 SPLAGQLMSFVL--KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV----EHKINFIE  128 (237)
T ss_dssp             CHHHHHHHHHHH--HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEE
T ss_pred             CHHHHHHHHHHH--HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEE
Confidence            344443433333  345678999999999999999999985578999999999999999999999887    56899999


Q ss_pred             cCCC------------CCCccEEEEEec
Q psy14969        660 TLPP------------QQDASRVNISVE  675 (687)
Q Consensus       660 GDAe------------daPFDLILVVfA  675 (687)
                      |++.            ..+||+|++...
T Consensus       129 gda~~~l~~l~~~~~~~~~fD~I~~d~~  156 (237)
T 3c3y_A          129 SDAMLALDNLLQGQESEGSYDFGFVDAD  156 (237)
T ss_dssp             SCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred             cCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence            9863            356999987653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.01  E-value=1.6e-09  Score=98.86  Aligned_cols=89  Identities=11%  Similarity=0.078  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .....+++.+  ...++.+|||||||+|.++..+++.. +..+|+|+|+++.+++.|++++...++......++.++.+|
T Consensus        16 ~~~~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           16 QRMNGVVAAL--KQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             HHHHHHHHHH--HHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred             HHHHHHHHHH--HhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence            4555666665  34578899999999999999999875 45699999999999999999998777611111279999999


Q ss_pred             CCCC-----CccEEEEE
Q psy14969        662 PPQQ-----DASRVNIS  673 (687)
Q Consensus       662 Aeda-----PFDLILVV  673 (687)
                      ....     .||+|+..
T Consensus        93 ~~~~~~~~~~fD~v~~~  109 (217)
T 3jwh_A           93 LTYQDKRFHGYDAATVI  109 (217)
T ss_dssp             TTSCCGGGCSCSEEEEE
T ss_pred             cccccccCCCcCEEeeH
Confidence            7643     58988765

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.01  E-value=2.2e-09  Score=99.63  Aligned_cols=87  Identities=16%  Similarity=0.202  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      +.....++..+. .+.++.+|||||||+|..+..+++..+  ++|+|+|+++.+++.|+++++..++    ..++.++.+
T Consensus        31 ~~~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~~  103 (257)
T 3f4k_A           31 PEATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC----ADRVKGITG  103 (257)
T ss_dssp             HHHHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEEC
T ss_pred             HHHHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCC----CCceEEEEC
Confidence            345555555442 467888999999999999999999874  4999999999999999999999987    567999999


Q ss_pred             CCCCC-----CccEEEEEe
Q psy14969        661 LPPQQ-----DASRVNISV  674 (687)
Q Consensus       661 DAeda-----PFDLILVVf  674 (687)
                      |....     .||+|+...
T Consensus       104 d~~~~~~~~~~fD~v~~~~  122 (257)
T 3f4k_A          104 SMDNLPFQNEELDLIWSEG  122 (257)
T ss_dssp             CTTSCSSCTTCEEEEEEES
T ss_pred             ChhhCCCCCCCEEEEEecC
Confidence            97653     488887653

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.00  E-value=1.6e-09  Score=98.84  Aligned_cols=90  Identities=10%  Similarity=0.136  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      +.....+++.+  ...++.+|||||||+|+++..+++.. +..+|+|+|+++.+++.|++++...++......++.++.+
T Consensus        15 ~~~~~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           15 QQRLGTVVAVL--KSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             HHHHHHHHHHH--HHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHH--hhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            44556666665  34578899999999999999999876 4579999999999999999999887651111127999999


Q ss_pred             CCCCC-----CccEEEEE
Q psy14969        661 LPPQQ-----DASRVNIS  673 (687)
Q Consensus       661 DAeda-----PFDLILVV  673 (687)
                      |....     .||+|+..
T Consensus        92 d~~~~~~~~~~fD~V~~~  109 (219)
T 3jwg_A           92 SLVYRDKRFSGYDAATVI  109 (219)
T ss_dssp             CSSSCCGGGTTCSEEEEE
T ss_pred             cccccccccCCCCEEEEH
Confidence            97643     48988764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.00  E-value=3e-09  Score=98.73  Aligned_cols=90  Identities=22%  Similarity=0.204  Sum_probs=74.4

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCccCCCcE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-HAHLLDEGVV  655 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-G~~VaSsgRI  655 (687)
                      ....|...+.++..+  .+.++.+|||+|||+|.++..+++.++|.++|+++|+++.+++.|+++++.. +.     .++
T Consensus        78 ~~~~~~~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-----~~v  150 (258)
T 2pwy_A           78 TPTYPKDASAMVTLL--DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-----ENV  150 (258)
T ss_dssp             CCCCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-----CCE
T ss_pred             ccccchHHHHHHHHc--CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-----CCE
Confidence            344566677777776  6889999999999999999999999766789999999999999999999887 63     578


Q ss_pred             EEEEcCCCC-----CCccEEEEE
Q psy14969        656 NIMRTLPPQ-----QDASRVNIS  673 (687)
Q Consensus       656 ~LI~GDAed-----aPFDLILVV  673 (687)
                      .+..+|...     ..||+|+..
T Consensus       151 ~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A          151 RFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             EEEESCGGGCCCCTTCEEEEEEE
T ss_pred             EEEECchhhcCCCCCCcCEEEEC
Confidence            898888643     348888764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.99  E-value=2.2e-09  Score=95.88  Aligned_cols=85  Identities=16%  Similarity=0.233  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      +.+...+++.+  ...++ +|||||||+|.++..+++.  +..+|+|+|+++.+++.|+++++..++    ..++.++.+
T Consensus        30 ~~~~~~~~~~~--~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~  100 (219)
T 3dlc_A           30 PIIAENIINRF--GITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANL----NDRIQIVQG  100 (219)
T ss_dssp             HHHHHHHHHHH--CCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEEC
T ss_pred             HHHHHHHHHhc--CCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccc----cCceEEEEc
Confidence            44566666666  45555 9999999999999999988  356999999999999999999999887    568999999


Q ss_pred             CCCC-----CCccEEEEEe
Q psy14969        661 LPPQ-----QDASRVNISV  674 (687)
Q Consensus       661 DAed-----aPFDLILVVf  674 (687)
                      +...     ..||+|+...
T Consensus       101 d~~~~~~~~~~~D~v~~~~  119 (219)
T 3dlc_A          101 DVHNIPIEDNYADLIVSRG  119 (219)
T ss_dssp             BTTBCSSCTTCEEEEEEES
T ss_pred             CHHHCCCCcccccEEEECc
Confidence            8765     3488887653

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.99  E-value=1.5e-09  Score=94.07  Aligned_cols=85  Identities=13%  Similarity=0.035  Sum_probs=66.6

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      ...+...++..+...+.++.+|||+|||+|.++..+++...   .|+|+|+++.+++.|+++++..++      ++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~   94 (171)
T 1ws6_A           24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL------GARVVA   94 (171)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC------CCEEEC
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC------ceEEEe
Confidence            34566666666532344788999999999999999998853   599999999999999999998875      678888


Q ss_pred             cCCCCC---------CccEEEEE
Q psy14969        660 TLPPQQ---------DASRVNIS  673 (687)
Q Consensus       660 GDAeda---------PFDLILVV  673 (687)
                      +|....         .||+|+..
T Consensus        95 ~d~~~~~~~~~~~~~~~D~i~~~  117 (171)
T 1ws6_A           95 LPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccHHHHHHhhhccCCceEEEEEC
Confidence            886531         58877654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.98  E-value=2.2e-09  Score=97.36  Aligned_cols=83  Identities=33%  Similarity=0.478  Sum_probs=69.4

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..+++.+  .+.++.+|||||||+|.++..+++..+|.++|+|+|+++.+++.|++++...++     .++.++.++...
T Consensus        27 ~~~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~   99 (219)
T 3dh0_A           27 EKVLKEF--GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-----KNVEVLKSEENK   99 (219)
T ss_dssp             HHHHHHH--TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEECBTTB
T ss_pred             HHHHHHh--CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeccccc
Confidence            3455555  577889999999999999999999986677999999999999999999999886     378999998764


Q ss_pred             -----CCccEEEEEe
Q psy14969        665 -----QDASRVNISV  674 (687)
Q Consensus       665 -----aPFDLILVVf  674 (687)
                           ..||+|+...
T Consensus       100 ~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A          100 IPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CSSCSSCEEEEEEES
T ss_pred             CCCCCCCeeEEEeeh
Confidence                 3488887653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.98  E-value=1.6e-09  Score=106.65  Aligned_cols=102  Identities=17%  Similarity=0.212  Sum_probs=80.3

Q ss_pred             CCCCCCccccCCcccCcHHHH---HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        564 PYHDYSVMLENCSYLNSPSFI---ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       564 AYsD~pLPIG~GqTISaP~Vv---AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .|.+..+.+..+..+++|.+.   ..+++.+  ...++.+|||||||+|.++..+++.  +.++|+|+|+++.+++.|++
T Consensus        89 ~f~~~~~~v~~~~lipr~~te~lv~~~l~~~--~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~  164 (284)
T 1nv8_A           89 EFMGLSFLVEEGVFVPRPETEELVELALELI--RKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARK  164 (284)
T ss_dssp             EETTEEEECCTTSCCCCTTHHHHHHHHHHHH--HHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHH
T ss_pred             EECCeEEEeCCCceecChhHHHHHHHHHHHh--cccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHH
Confidence            456667777778778777543   3444433  2236679999999999999999988  47799999999999999999


Q ss_pred             HHHHcCCCccCCCcEEEEEcCCCC---CCc---cEEEEE
Q psy14969        641 NIRKNHAHLLDEGVVNIMRTLPPQ---QDA---SRVNIS  673 (687)
Q Consensus       641 NLKkaG~~VaSsgRI~LI~GDAed---aPF---DLILVV  673 (687)
                      |++..++    .+++.++.+|...   ..|   |+|+..
T Consensus       165 n~~~~~l----~~~v~~~~~D~~~~~~~~f~~~D~Ivsn  199 (284)
T 1nv8_A          165 NAERHGV----SDRFFVRKGEFLEPFKEKFASIEMILSN  199 (284)
T ss_dssp             HHHHTTC----TTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             HHHHcCC----CCceEEEECcchhhcccccCCCCEEEEc
Confidence            9999987    5679999999764   257   987664

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.98  E-value=2.7e-09  Score=100.62  Aligned_cols=85  Identities=16%  Similarity=0.174  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .....++..+. .+.++.+|||||||+|.++..+++.  +.++|+|+|+++.+++.|+++++..++    ..++.++.+|
T Consensus        32 ~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d  104 (267)
T 3kkz_A           32 EVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGL----QNRVTGIVGS  104 (267)
T ss_dssp             HHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECC
T ss_pred             HHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCC----CcCcEEEEcC
Confidence            34555555542 3678899999999999999999988  356999999999999999999999887    5679999999


Q ss_pred             CCCC-----CccEEEEE
Q psy14969        662 PPQQ-----DASRVNIS  673 (687)
Q Consensus       662 Aeda-----PFDLILVV  673 (687)
                      ....     .||+|+..
T Consensus       105 ~~~~~~~~~~fD~i~~~  121 (267)
T 3kkz_A          105 MDDLPFRNEELDLIWSE  121 (267)
T ss_dssp             TTSCCCCTTCEEEEEES
T ss_pred             hhhCCCCCCCEEEEEEc
Confidence            7654     48887654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.98  E-value=3.6e-09  Score=92.35  Aligned_cols=87  Identities=20%  Similarity=0.242  Sum_probs=72.2

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      .+.+.+...+++.+  .+.++.+|||+|||+|.++..+++..   ++|+|+|+++.+++.|++++...+.    ..++.+
T Consensus        16 ~~~~~~~~~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~   86 (192)
T 1l3i_A           16 PTAMEVRCLIMCLA--EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGL----GDNVTL   86 (192)
T ss_dssp             CCCHHHHHHHHHHH--CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC----CTTEEE
T ss_pred             CChHHHHHHHHHhc--CCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCC----CcceEE
Confidence            34566777777777  67889999999999999999999876   4999999999999999999998876    467899


Q ss_pred             EEcCCCC-----CCccEEEEE
Q psy14969        658 MRTLPPQ-----QDASRVNIS  673 (687)
Q Consensus       658 I~GDAed-----aPFDLILVV  673 (687)
                      ..++...     ..||+|+..
T Consensus        87 ~~~d~~~~~~~~~~~D~v~~~  107 (192)
T 1l3i_A           87 MEGDAPEALCKIPDIDIAVVG  107 (192)
T ss_dssp             EESCHHHHHTTSCCEEEEEES
T ss_pred             EecCHHHhcccCCCCCEEEEC
Confidence            9888532     468988654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.97  E-value=1.1e-09  Score=107.61  Aligned_cols=87  Identities=20%  Similarity=0.302  Sum_probs=67.1

Q ss_pred             HHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      +.|.++..+. ..++||++|||+|||+|+++..+|+.++|.|+|+|+|+++.|++.|+++.++.       .++..+.++
T Consensus        62 laa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-------~ni~~V~~d  134 (233)
T 4df3_A           62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-------RNIFPILGD  134 (233)
T ss_dssp             HHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-------TTEEEEESC
T ss_pred             HHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-------cCeeEEEEe
Confidence            4455544332 16899999999999999999999999999999999999999999998886654       357777777


Q ss_pred             CCC--------CCccEEEEEecC
Q psy14969        662 PPQ--------QDASRVNISVEP  676 (687)
Q Consensus       662 Aed--------aPFDLILVVfAP  676 (687)
                      +..        ..+|+|+..+.-
T Consensus       135 ~~~p~~~~~~~~~vDvVf~d~~~  157 (233)
T 4df3_A          135 ARFPEKYRHLVEGVDGLYADVAQ  157 (233)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCCC
T ss_pred             ccCccccccccceEEEEEEeccC
Confidence            542        336766655443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.96  E-value=2.6e-09  Score=100.34  Aligned_cols=84  Identities=20%  Similarity=0.273  Sum_probs=68.9

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHH------HHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEY------LVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpe------AVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      ...+++.+  .+.++.+|||||||+|+++..+++..+|.++|+|+|+++.      +++.|+++++..++    ..++.+
T Consensus        32 ~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~----~~~v~~  105 (275)
T 3bkx_A           32 RLAIAEAW--QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL----GDRLTV  105 (275)
T ss_dssp             HHHHHHHH--TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT----GGGEEE
T ss_pred             HHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC----CCceEE
Confidence            34445555  5788999999999999999999998766679999999997      99999999998876    457999


Q ss_pred             EEcC---CC-----CCCccEEEEE
Q psy14969        658 MRTL---PP-----QQDASRVNIS  673 (687)
Q Consensus       658 I~GD---Ae-----daPFDLILVV  673 (687)
                      +.+|   ..     ...||+|+..
T Consensus       106 ~~~d~~~~~~~~~~~~~fD~v~~~  129 (275)
T 3bkx_A          106 HFNTNLSDDLGPIADQHFDRVVLA  129 (275)
T ss_dssp             ECSCCTTTCCGGGTTCCCSEEEEE
T ss_pred             EECChhhhccCCCCCCCEEEEEEc
Confidence            9987   33     2469998765

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.96  E-value=3.7e-09  Score=106.42  Aligned_cols=88  Identities=22%  Similarity=0.314  Sum_probs=73.5

Q ss_pred             CCc-ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC
Q psy14969        574 NCS-YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE  652 (687)
Q Consensus       574 ~Gq-TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs  652 (687)
                      .|+ .+..|.+...+++.+  .+.++.+|||||||+|++|..|++...   +|+|||+++.|++.|++++...       
T Consensus        28 ~GQnfL~d~~i~~~Iv~~l--~~~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~~-------   95 (295)
T 3gru_A           28 LGQCFLIDKNFVNKAVESA--NLTKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKELY-------   95 (295)
T ss_dssp             --CCEECCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHHC-------
T ss_pred             cCccccCCHHHHHHHHHhc--CCCCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhccC-------
Confidence            344 567889999999988  688899999999999999999998853   9999999999999999998732       


Q ss_pred             CcEEEEEcCCCCC-----CccEEEEE
Q psy14969        653 GVVNIMRTLPPQQ-----DASRVNIS  673 (687)
Q Consensus       653 gRI~LI~GDAeda-----PFDLILVV  673 (687)
                      .++.++.+|+...     +||.|+..
T Consensus        96 ~~v~vi~gD~l~~~~~~~~fD~Iv~N  121 (295)
T 3gru_A           96 NNIEIIWGDALKVDLNKLDFNKVVAN  121 (295)
T ss_dssp             SSEEEEESCTTTSCGGGSCCSEEEEE
T ss_pred             CCeEEEECchhhCCcccCCccEEEEe
Confidence            4799999998753     47877644

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.95  E-value=3.1e-09  Score=97.63  Aligned_cols=73  Identities=10%  Similarity=0.215  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------CCcc
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------QDAS  668 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------aPFD  668 (687)
                      .++.+|||||||+|+++..+|+.. |.++|+|+|+++.+++.|++++...++     .++.++.+|+..       ..||
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~D  113 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV-----PNIKLLWVDGSDLTDYFEDGEID  113 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC-----SSEEEEECCSSCGGGTSCTTCCS
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCC-----CCEEEEeCCHHHHHhhcCCCCCC
Confidence            467899999999999999999987 577999999999999999999999876     479999999764       3489


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      .|++.+
T Consensus       114 ~i~~~~  119 (214)
T 1yzh_A          114 RLYLNF  119 (214)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            988775

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.95  E-value=1.6e-09  Score=95.74  Aligned_cols=84  Identities=15%  Similarity=0.063  Sum_probs=66.8

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+++.+. ...++.+|||+|||+|.++..+++. + .++|+|+|+++.+++.|+++++..++    ..++.++.+|.
T Consensus        18 ~~~~~~~~l~-~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~   90 (177)
T 2esr_A           18 VRGAIFNMIG-PYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLLKMEA   90 (177)
T ss_dssp             CHHHHHHHHC-SCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEECSCH
T ss_pred             HHHHHHHHHH-hhcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECcH
Confidence            4555555551 2567889999999999999999887 2 46999999999999999999999876    45789999886


Q ss_pred             CC------CCccEEEEE
Q psy14969        663 PQ------QDASRVNIS  673 (687)
Q Consensus       663 ed------aPFDLILVV  673 (687)
                      ..      ..||+|+..
T Consensus        91 ~~~~~~~~~~fD~i~~~  107 (177)
T 2esr_A           91 ERAIDCLTGRFDLVFLD  107 (177)
T ss_dssp             HHHHHHBCSCEEEEEEC
T ss_pred             HHhHHhhcCCCCEEEEC
Confidence            43      458877654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.94  E-value=3.6e-09  Score=93.14  Aligned_cols=87  Identities=16%  Similarity=0.040  Sum_probs=68.8

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .+.+...+++.+. ...++.+|||+|||+|.++..+++..  ..+|+|+|+++.+++.|++++...++    ..++.++.
T Consensus        28 ~~~~~~~~~~~l~-~~~~~~~vLD~GcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~  100 (187)
T 2fhp_A           28 TDKVKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKE----PEKFEVRK  100 (187)
T ss_dssp             CHHHHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEE
T ss_pred             HHHHHHHHHHHHH-hhcCCCCEEEeCCccCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC----CcceEEEE
Confidence            4456666666652 23578899999999999999888752  46999999999999999999999876    45799999


Q ss_pred             cCCC---------CCCccEEEEE
Q psy14969        660 TLPP---------QQDASRVNIS  673 (687)
Q Consensus       660 GDAe---------daPFDLILVV  673 (687)
                      +|..         ...||+|+..
T Consensus       101 ~d~~~~~~~~~~~~~~fD~i~~~  123 (187)
T 2fhp_A          101 MDANRALEQFYEEKLQFDLVLLD  123 (187)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CcHHHHHHHHHhcCCCCCEEEEC
Confidence            9853         3568977653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.94  E-value=4.8e-09  Score=101.13  Aligned_cols=82  Identities=20%  Similarity=0.122  Sum_probs=69.1

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-  663 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-  663 (687)
                      ..+++.+  .+.++.+|||||||+|.++..+++..+  ++|+|+|+++.+++.|+++++..++    .+++.++.+|.. 
T Consensus        62 ~~~~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~  133 (302)
T 3hem_A           62 KLALDKL--NLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVRIQGWEE  133 (302)
T ss_dssp             HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCC----SSCEEEEECCGGG
T ss_pred             HHHHHHc--CCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECCHHH
Confidence            3444444  578899999999999999999999864  5999999999999999999999887    568999999865 


Q ss_pred             -CCCccEEEEEe
Q psy14969        664 -QQDASRVNISV  674 (687)
Q Consensus       664 -daPFDLILVVf  674 (687)
                       ...||+|+...
T Consensus       134 ~~~~fD~v~~~~  145 (302)
T 3hem_A          134 FDEPVDRIVSLG  145 (302)
T ss_dssp             CCCCCSEEEEES
T ss_pred             cCCCccEEEEcc
Confidence             45699998763

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.94  E-value=7.5e-09  Score=97.10  Aligned_cols=84  Identities=19%  Similarity=0.132  Sum_probs=68.5

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+++.+  .+.++.+|||||||+|.++..+++..+  ++|+|+|+++.+++.|++++...++    ..++.++.+|.
T Consensus        49 ~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~  120 (273)
T 3bus_A           49 LTDEMIALL--DVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGL----ANRVTFSYADA  120 (273)
T ss_dssp             HHHHHHHHS--CCCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCT
T ss_pred             HHHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEECcc
Confidence            334445444  567889999999999999999998753  6999999999999999999999887    56899999997


Q ss_pred             CCC-----CccEEEEEe
Q psy14969        663 PQQ-----DASRVNISV  674 (687)
Q Consensus       663 eda-----PFDLILVVf  674 (687)
                      ...     .||+|+...
T Consensus       121 ~~~~~~~~~fD~v~~~~  137 (273)
T 3bus_A          121 MDLPFEDASFDAVWALE  137 (273)
T ss_dssp             TSCCSCTTCEEEEEEES
T ss_pred             ccCCCCCCCccEEEEec
Confidence            653     478887653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.93  E-value=5.8e-09  Score=97.72  Aligned_cols=81  Identities=27%  Similarity=0.327  Sum_probs=66.3

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+++.+  .+.++.+|||||||+|.++..+++..+   +|+|+|+++.|++.|++++...++     .++.++.+|+.
T Consensus        26 ~~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~-----~~v~~~~~d~~   95 (260)
T 1vl5_A           26 LAKLMQIA--ALKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGH-----QQVEYVQGDAE   95 (260)
T ss_dssp             HHHHHHHH--TCCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCC-
T ss_pred             HHHHHHHh--CCCCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCC-----CceEEEEecHH
Confidence            34455555  567889999999999999999998864   999999999999999999998876     36899999976


Q ss_pred             CC-----CccEEEEEe
Q psy14969        664 QQ-----DASRVNISV  674 (687)
Q Consensus       664 da-----PFDLILVVf  674 (687)
                      ..     .||+|+...
T Consensus        96 ~l~~~~~~fD~V~~~~  111 (260)
T 1vl5_A           96 QMPFTDERFHIVTCRI  111 (260)
T ss_dssp             CCCSCTTCEEEEEEES
T ss_pred             hCCCCCCCEEEEEEhh
Confidence            53     478887664

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.93  E-value=3e-09  Score=98.26  Aligned_cols=88  Identities=11%  Similarity=-0.064  Sum_probs=64.2

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-------CccCC
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA-------HLLDE  652 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~-------~VaSs  652 (687)
                      .|.+...+ ..+  .+.++.+|||||||+|+.+..|++..   .+|+|||+|+.|++.|+++......       .....
T Consensus         8 ~~~l~~~~-~~l--~~~~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~   81 (203)
T 1pjz_A            8 NKDLQQYW-SSL--NVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA   81 (203)
T ss_dssp             THHHHHHH-HHH--CCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC
T ss_pred             CHHHHHHH-Hhc--ccCCCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccC
Confidence            45555554 334  46788999999999999999999874   3899999999999999987643100       00012


Q ss_pred             CcEEEEEcCCCCCC------ccEEEEE
Q psy14969        653 GVVNIMRTLPPQQD------ASRVNIS  673 (687)
Q Consensus       653 gRI~LI~GDAedaP------FDLILVV  673 (687)
                      .++.++++|....+      ||+|+..
T Consensus        82 ~~v~~~~~d~~~l~~~~~~~fD~v~~~  108 (203)
T 1pjz_A           82 PGIEIWCGDFFALTARDIGHCAAFYDR  108 (203)
T ss_dssp             SSSEEEEECCSSSTHHHHHSEEEEEEE
T ss_pred             CccEEEECccccCCcccCCCEEEEEEC
Confidence            47899999987654      7888753

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.93  E-value=3e-09  Score=108.43  Aligned_cols=75  Identities=12%  Similarity=0.117  Sum_probs=63.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHH-HHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---CCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAAC-LGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---QDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAa-LArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---aPFDL  669 (687)
                      .+++|++|||||||+|.+++. +|+.  ++++|+|+|++++|++.|++++++.++     .++.++.||+..   .+||+
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~--~ga~V~gIDis~~~l~~Ar~~~~~~gl-----~~v~~v~gDa~~l~d~~FDv  191 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHV--YGMRVNVVEIEPDIAELSRKVIEGLGV-----DGVNVITGDETVIDGLEFDV  191 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHT--TCCEEEEEESSHHHHHHHHHHHHHHTC-----CSEEEEESCGGGGGGCCCSE
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHhcCC-----CCeEEEECchhhCCCCCcCE
Confidence            789999999999999987755 4544  357999999999999999999999885     589999999764   56999


Q ss_pred             EEEEec
Q psy14969        670 VNISVE  675 (687)
Q Consensus       670 ILVVfA  675 (687)
                      |++.+.
T Consensus       192 V~~~a~  197 (298)
T 3fpf_A          192 LMVAAL  197 (298)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            987543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.93  E-value=4.6e-09  Score=94.52  Aligned_cols=86  Identities=15%  Similarity=-0.004  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhhhc-CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        581 PSFIASSLEPALLK-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       581 P~VvAlLLElLked-LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      ..+...+++.+... ..++.+|||+|||+|.++..+++..  ..+|+|+|+++.+++.|+++++..++     .++.++.
T Consensus        27 ~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~   99 (189)
T 3p9n_A           27 DRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRG--AASVLFVESDQRSAAVIARNIEALGL-----SGATLRR   99 (189)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEECCHHHHHHHHHHHHHHTC-----SCEEEEE
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEE
Confidence            34555555555321 2578899999999999999877652  45899999999999999999999875     5799999


Q ss_pred             cCCC-------CCCccEEEEE
Q psy14969        660 TLPP-------QQDASRVNIS  673 (687)
Q Consensus       660 GDAe-------daPFDLILVV  673 (687)
                      +|+.       ...||+|+..
T Consensus       100 ~d~~~~~~~~~~~~fD~i~~~  120 (189)
T 3p9n_A          100 GAVAAVVAAGTTSPVDLVLAD  120 (189)
T ss_dssp             SCHHHHHHHCCSSCCSEEEEC
T ss_pred             ccHHHHHhhccCCCccEEEEC
Confidence            9853       4579988664

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.92  E-value=6.8e-09  Score=96.91  Aligned_cols=85  Identities=15%  Similarity=0.213  Sum_probs=69.8

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .+.....+++.+  .+.++.+|||||||+|.++..+++...   +|+|+|+++.+++.|++++...++     .++.++.
T Consensus         6 ~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~   75 (239)
T 1xxl_A            6 HHHSLGLMIKTA--ECRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGV-----ENVRFQQ   75 (239)
T ss_dssp             CHHHHHHHHHHH--TCCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTC-----CSEEEEE
T ss_pred             cCCCcchHHHHh--CcCCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCC-----CCeEEEe
Confidence            344555666666  688999999999999999999998764   899999999999999999998876     4688999


Q ss_pred             cCCCCC-----CccEEEEEe
Q psy14969        660 TLPPQQ-----DASRVNISV  674 (687)
Q Consensus       660 GDAeda-----PFDLILVVf  674 (687)
                      ++....     .||+|+...
T Consensus        76 ~d~~~~~~~~~~fD~v~~~~   95 (239)
T 1xxl_A           76 GTAESLPFPDDSFDIITCRY   95 (239)
T ss_dssp             CBTTBCCSCTTCEEEEEEES
T ss_pred             cccccCCCCCCcEEEEEECC
Confidence            887643     478887663

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.92  E-value=9.7e-09  Score=92.88  Aligned_cols=89  Identities=16%  Similarity=0.088  Sum_probs=69.3

Q ss_pred             ccCcHHHHHHHHHHhhh-cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcE
Q psy14969        577 YLNSPSFIASSLEPALL-KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV  655 (687)
Q Consensus       577 TISaP~VvAlLLElLke-dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI  655 (687)
                      ....+.+...++..+.. ...++.+|||+|||+|.++..+++..  ..+|+|+|+++.+++.|+++++..++      ++
T Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~------~~   99 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG------KF   99 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT------SE
T ss_pred             ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCC------CE
Confidence            33456666666655421 24578899999999999999999873  24899999999999999999988765      68


Q ss_pred             EEEEcCCCCC--CccEEEEE
Q psy14969        656 NIMRTLPPQQ--DASRVNIS  673 (687)
Q Consensus       656 ~LI~GDAeda--PFDLILVV  673 (687)
                      .++.+|+...  .||+|+..
T Consensus       100 ~~~~~d~~~~~~~~D~v~~~  119 (207)
T 1wy7_A          100 KVFIGDVSEFNSRVDIVIMN  119 (207)
T ss_dssp             EEEESCGGGCCCCCSEEEEC
T ss_pred             EEEECchHHcCCCCCEEEEc
Confidence            9999997654  58987654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.92  E-value=4.1e-09  Score=97.73  Aligned_cols=83  Identities=13%  Similarity=0.021  Sum_probs=66.9

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+...+. ...++.+|||||||+|.++..+++..   ++|+|+|+++.+++.|+++++..++    ..++.++.+|+
T Consensus        65 ~~~~l~~~~~-~~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~  136 (241)
T 3gdh_A           65 IAEHIAGRVS-QSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGI----ADKIEFICGDF  136 (241)
T ss_dssp             HHHHHHHHHH-HHSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCH
T ss_pred             HHHHHHHHhh-hccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCC----CcCeEEEECCh
Confidence            4444444442 23478999999999999999999874   4999999999999999999999886    45899999986


Q ss_pred             C----CCCccEEEEE
Q psy14969        663 P----QQDASRVNIS  673 (687)
Q Consensus       663 e----daPFDLILVV  673 (687)
                      .    ...||+|+..
T Consensus       137 ~~~~~~~~~D~v~~~  151 (241)
T 3gdh_A          137 LLLASFLKADVVFLS  151 (241)
T ss_dssp             HHHGGGCCCSEEEEC
T ss_pred             HHhcccCCCCEEEEC
Confidence            4    4579988754

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.92  E-value=5.5e-10  Score=99.47  Aligned_cols=93  Identities=19%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             cCCcccCcHHH---HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCc
Q psy14969        573 ENCSYLNSPSF---IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL  649 (687)
Q Consensus       573 G~GqTISaP~V---vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~V  649 (687)
                      ..+..++.|..   ...+++.+. ...++.+|||+|||+|.++..+++.. +.++|+|+|+++.+++.|++++...+.  
T Consensus         4 ~~~~~~p~~~~~~~~~~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--   79 (215)
T 4dzr_A            4 GPDCLIPRPDTEVLVEEAIRFLK-RMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA--   79 (215)
T ss_dssp             SGGGGSCCHHHHHHHHHHHHHHT-TCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC------------------
T ss_pred             CCCccCCCccHHHHHHHHHHHhh-hcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC--
Confidence            34555666654   334444431 12678899999999999999999986 577999999999999999999988764  


Q ss_pred             cCCCcEEEEEcCCC----C-----CCccEEEEE
Q psy14969        650 LDEGVVNIMRTLPP----Q-----QDASRVNIS  673 (687)
Q Consensus       650 aSsgRI~LI~GDAe----d-----aPFDLILVV  673 (687)
                          ++.++.+|..    .     ..||+|+..
T Consensus        80 ----~~~~~~~d~~~~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           80 ----VVDWAAADGIEWLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             -------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred             ----ceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence                5666666642    2     678988663

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.91  E-value=7.6e-09  Score=99.05  Aligned_cols=89  Identities=24%  Similarity=0.285  Sum_probs=74.0

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|...+.++..+  .+.++.+|||+|||+|.++..+++.++|.++|+++|+++.+++.|+++++..++    ..++.++
T Consensus        96 ~~~~~~~~i~~~~--~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~  169 (277)
T 1o54_A           96 VYPKDSSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----IERVTIK  169 (277)
T ss_dssp             CCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----GGGEEEE
T ss_pred             cCHHHHHHHHHHh--CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC----CCCEEEE
Confidence            4555667777776  688899999999999999999999866678999999999999999999998875    4578888


Q ss_pred             EcCCCC----CCccEEEEE
Q psy14969        659 RTLPPQ----QDASRVNIS  673 (687)
Q Consensus       659 ~GDAed----aPFDLILVV  673 (687)
                      .+|...    ..||+|+..
T Consensus       170 ~~d~~~~~~~~~~D~V~~~  188 (277)
T 1o54_A          170 VRDISEGFDEKDVDALFLD  188 (277)
T ss_dssp             CCCGGGCCSCCSEEEEEEC
T ss_pred             ECCHHHcccCCccCEEEEC
Confidence            888542    358888763

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.91  E-value=4.8e-09  Score=102.41  Aligned_cols=88  Identities=14%  Similarity=0.183  Sum_probs=67.9

Q ss_pred             HHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      +.+.++..+. ..+++|.+|||+|||||+.|..+|+.+++.|+|+|+|+++.|++...+..++.       .++.++.+|
T Consensus        61 la~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-------~nv~~i~~D  133 (232)
T 3id6_C           61 LAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-------PNIFPLLAD  133 (232)
T ss_dssp             HHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-------TTEEEEECC
T ss_pred             HHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCeEEEEcc
Confidence            4555555542 14789999999999999999999999888999999999999876555444432       268888888


Q ss_pred             CCC--------CCccEEEEEecCC
Q psy14969        662 PPQ--------QDASRVNISVEPQ  677 (687)
Q Consensus       662 Aed--------aPFDLILVVfAP~  677 (687)
                      +..        .+||+|+..++++
T Consensus       134 a~~~~~~~~~~~~~D~I~~d~a~~  157 (232)
T 3id6_C          134 ARFPQSYKSVVENVDVLYVDIAQP  157 (232)
T ss_dssp             TTCGGGTTTTCCCEEEEEECCCCT
T ss_pred             cccchhhhccccceEEEEecCCCh
Confidence            753        3689998887664

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.91  E-value=1.1e-08  Score=98.61  Aligned_cols=86  Identities=13%  Similarity=0.114  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCccCCCcEEEEEc
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-HAHLLDEGVVNIMRT  660 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-G~~VaSsgRI~LI~G  660 (687)
                      .+...+....   ..++.+|||||||+|..+..+++...+..+|+|+|+++.+++.|+++++.. +.    ..++.++.+
T Consensus        24 ~~~~~l~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~~v~~~~~   96 (299)
T 3g5t_A           24 DFYKMIDEYH---DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT----YKNVSFKIS   96 (299)
T ss_dssp             HHHHHHHHHC---CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C----CTTEEEEEC
T ss_pred             HHHHHHHHHh---cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC----CCceEEEEc
Confidence            4555555543   467899999999999999999987645679999999999999999999987 32    358999999


Q ss_pred             CCCC-----------CCccEEEEEe
Q psy14969        661 LPPQ-----------QDASRVNISV  674 (687)
Q Consensus       661 DAed-----------aPFDLILVVf  674 (687)
                      ++..           ..||+|+...
T Consensus        97 d~~~~~~~~~~~~~~~~fD~V~~~~  121 (299)
T 3g5t_A           97 SSDDFKFLGADSVDKQKIDMITAVE  121 (299)
T ss_dssp             CTTCCGGGCTTTTTSSCEEEEEEES
T ss_pred             CHHhCCccccccccCCCeeEEeHhh
Confidence            9765           3588887653

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.90  E-value=5.9e-09  Score=102.44  Aligned_cols=86  Identities=21%  Similarity=0.241  Sum_probs=72.8

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|.+...+++.+  .+.++.+|||||||+|++|..|++...   +|+|+|+++.|++.|++++...+.    ..++.++
T Consensus        12 ~d~~i~~~i~~~~--~~~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~   82 (285)
T 1zq9_A           12 KNPLIINSIIDKA--ALRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPV----ASKLQVL   82 (285)
T ss_dssp             CCHHHHHHHHHHT--CCCTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTT----GGGEEEE
T ss_pred             CCHHHHHHHHHhc--CCCCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCC----CCceEEE
Confidence            5788899998887  678899999999999999999998854   899999999999999999877654    3579999


Q ss_pred             EcCCCCC---CccEEEEE
Q psy14969        659 RTLPPQQ---DASRVNIS  673 (687)
Q Consensus       659 ~GDAeda---PFDLILVV  673 (687)
                      .+|+...   .||.|+..
T Consensus        83 ~~D~~~~~~~~fD~vv~n  100 (285)
T 1zq9_A           83 VGDVLKTDLPFFDTCVAN  100 (285)
T ss_dssp             ESCTTTSCCCCCSEEEEE
T ss_pred             EcceecccchhhcEEEEe
Confidence            9998654   47877653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.90  E-value=6.6e-09  Score=99.70  Aligned_cols=103  Identities=17%  Similarity=0.238  Sum_probs=77.4

Q ss_pred             CCCCCCccccCCcccCcHHHHHHHHHHhhhcC-CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy14969        564 PYHDYSVMLENCSYLNSPSFIASSLEPALLKL-KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI  642 (687)
Q Consensus       564 AYsD~pLPIG~GqTISaP~VvAlLLElLkedL-kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNL  642 (687)
                      .|.+..+.+..+..+++|.....+...+ ..+ .++.+|||||||+|..+..+++.. |.++|+|+|+++.+++.|++++
T Consensus        76 ~f~~~~~~~~~~~~ipr~~te~l~~~~l-~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~  153 (276)
T 2b3t_A           76 EFWSLPLFVSPATLIPRPDTECLVEQAL-ARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNA  153 (276)
T ss_dssp             EETTEEEECCTTSCCCCTTHHHHHHHHH-HHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHH
T ss_pred             EECCceEEeCCCCcccCchHHHHHHHHH-HhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH
Confidence            4455566666777777775433322222 122 567899999999999999999886 4779999999999999999999


Q ss_pred             HHcCCCccCCCcEEEEEcCCC----CCCccEEEEE
Q psy14969        643 RKNHAHLLDEGVVNIMRTLPP----QQDASRVNIS  673 (687)
Q Consensus       643 KkaG~~VaSsgRI~LI~GDAe----daPFDLILVV  673 (687)
                      +..++     .++.++.+|..    ...||+|+..
T Consensus       154 ~~~~~-----~~v~~~~~d~~~~~~~~~fD~Iv~n  183 (276)
T 2b3t_A          154 QHLAI-----KNIHILQSDWFSALAGQQFAMIVSN  183 (276)
T ss_dssp             HHHTC-----CSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred             HHcCC-----CceEEEEcchhhhcccCCccEEEEC
Confidence            99886     36899999865    3468987654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.90  E-value=1.3e-08  Score=92.19  Aligned_cols=84  Identities=19%  Similarity=0.077  Sum_probs=66.5

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+++.+...+.++.+|||||||+|.++..+++.  +.++|+|+|+++.+++.|+++++..++    . ++.++.+|.
T Consensus        46 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~----~-~v~~~~~d~  118 (205)
T 3grz_A           46 TTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGI----Y-DIALQKTSL  118 (205)
T ss_dssp             HHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTC----C-CCEEEESST
T ss_pred             cHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCC----C-ceEEEeccc
Confidence            334444545334678899999999999999999875  246999999999999999999999886    2 388999886


Q ss_pred             CC---CCccEEEEE
Q psy14969        663 PQ---QDASRVNIS  673 (687)
Q Consensus       663 ed---aPFDLILVV  673 (687)
                      ..   ..||+|+..
T Consensus       119 ~~~~~~~fD~i~~~  132 (205)
T 3grz_A          119 LADVDGKFDLIVAN  132 (205)
T ss_dssp             TTTCCSCEEEEEEE
T ss_pred             cccCCCCceEEEEC
Confidence            53   458988764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.90  E-value=7.9e-09  Score=100.55  Aligned_cols=73  Identities=15%  Similarity=0.125  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----CccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFDL  669 (687)
                      +.++.+|||||||+|.++..+++..+  ++|+|+|+++.+++.|+++++..++    ..++.++.+|....     .||+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~  188 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARELRI----DDHVRSRVCNMLDTPFDKGAVTA  188 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCCCTTCEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC----CCceEEEECChhcCCCCCCCEeE
Confidence            67889999999999999999998853  5899999999999999999999987    56899999997654     4888


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       189 V~~~  192 (312)
T 3vc1_A          189 SWNN  192 (312)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            8764

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.89  E-value=6.9e-09  Score=99.69  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      +.....+++.+. .+.++.+|||||||+|..+..+++..++.++|+|+|+++.+++.|++++...+.      ++.++.+
T Consensus         7 ~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~v~~~~~   79 (284)
T 3gu3_A            7 DDYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY------DSEFLEG   79 (284)
T ss_dssp             HHHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS------EEEEEES
T ss_pred             hHHHHHHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC------ceEEEEc
Confidence            456666666542 467889999999999999999998874347999999999999999999988764      7899999


Q ss_pred             CCCCCC----ccEEEEEe
Q psy14969        661 LPPQQD----ASRVNISV  674 (687)
Q Consensus       661 DAedaP----FDLILVVf  674 (687)
                      |....+    ||+|+...
T Consensus        80 d~~~~~~~~~fD~v~~~~   97 (284)
T 3gu3_A           80 DATEIELNDKYDIAICHA   97 (284)
T ss_dssp             CTTTCCCSSCEEEEEEES
T ss_pred             chhhcCcCCCeeEEEECC
Confidence            977544    78887654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.89  E-value=5.3e-09  Score=102.71  Aligned_cols=79  Identities=16%  Similarity=0.228  Sum_probs=68.8

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      .+..|.+...+++.+  .+.++.+|||||||+|++|..|++..   ++|+|+|+++.|++.|++++..       ..++.
T Consensus        11 FL~d~~i~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~-------~~~v~   78 (255)
T 3tqs_A           11 FLHDSFVLQKIVSAI--HPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ-------QKNIT   78 (255)
T ss_dssp             EECCHHHHHHHHHHH--CCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT-------CTTEE
T ss_pred             cccCHHHHHHHHHhc--CCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh-------CCCcE
Confidence            346788999999988  78889999999999999999999875   3999999999999999998865       24799


Q ss_pred             EEEcCCCCCCc
Q psy14969        657 IMRTLPPQQDA  667 (687)
Q Consensus       657 LI~GDAedaPF  667 (687)
                      ++.||+...++
T Consensus        79 ~i~~D~~~~~~   89 (255)
T 3tqs_A           79 IYQNDALQFDF   89 (255)
T ss_dssp             EEESCTTTCCG
T ss_pred             EEEcchHhCCH
Confidence            99999987765

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.89  E-value=1.9e-08  Score=92.90  Aligned_cols=87  Identities=20%  Similarity=0.199  Sum_probs=71.8

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..|...+.++..+  .+.++.+|||+|||+|.++..+++. +  ++|+++|+++.+++.|+++++..++    ..++.+
T Consensus        74 ~~~~~~~~~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~  144 (248)
T 2yvl_A           74 IIYPKDSFYIALKL--NLNKEKRVLEFGTGSGALLAVLSEV-A--GEVWTFEAVEEFYKTAQKNLKKFNL----GKNVKF  144 (248)
T ss_dssp             CCCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHH-S--SEEEEECSCHHHHHHHHHHHHHTTC----CTTEEE
T ss_pred             cccchhHHHHHHhc--CCCCCCEEEEeCCCccHHHHHHHHh-C--CEEEEEecCHHHHHHHHHHHHHcCC----CCcEEE
Confidence            34566777777776  6788999999999999999999988 3  5999999999999999999998876    467888


Q ss_pred             EEcCCCC-----CCccEEEEE
Q psy14969        658 MRTLPPQ-----QDASRVNIS  673 (687)
Q Consensus       658 I~GDAed-----aPFDLILVV  673 (687)
                      +.++...     ..||+|+..
T Consensus       145 ~~~d~~~~~~~~~~~D~v~~~  165 (248)
T 2yvl_A          145 FNVDFKDAEVPEGIFHAAFVD  165 (248)
T ss_dssp             ECSCTTTSCCCTTCBSEEEEC
T ss_pred             EEcChhhcccCCCcccEEEEC
Confidence            8888643     358988763

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.89  E-value=8.8e-09  Score=96.01  Aligned_cols=74  Identities=14%  Similarity=0.249  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCcc
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDAS  668 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPFD  668 (687)
                      .++.+|||||||+|.++..||+.. |...|+|||+++.+++.|++++...++     .++.++.+|+.       ...||
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~-----~nv~~~~~d~~~l~~~~~~~~~d  110 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA-----QNVKLLNIDADTLTDVFEPGEVK  110 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC-----SSEEEECCCGGGHHHHCCTTSCC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCC-----CCEEEEeCCHHHHHhhcCcCCcC
Confidence            367899999999999999999986 578999999999999999999999876     46999999864       34589


Q ss_pred             EEEEEec
Q psy14969        669 RVNISVE  675 (687)
Q Consensus       669 LILVVfA  675 (687)
                      .|++.+.
T Consensus       111 ~v~~~~~  117 (213)
T 2fca_A          111 RVYLNFS  117 (213)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            8887763

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.88  E-value=7.8e-09  Score=97.76  Aligned_cols=74  Identities=11%  Similarity=0.128  Sum_probs=63.9

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--------CCCc
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--------QQDA  667 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--------daPF  667 (687)
                      .++.+|||||||+|.++..+|+.. |...|+|||+++.+++.|+++++..++     .++.++.+|+.        ...|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l-----~nv~~~~~Da~~~l~~~~~~~~~  106 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGL-----SNLRVMCHDAVEVLHKMIPDNSL  106 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTC-----SSEEEECSCHHHHHHHHSCTTCE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCC-----CcEEEEECCHHHHHHHHcCCCCh
Confidence            367899999999999999999987 578999999999999999999999886     46999999853        4568


Q ss_pred             cEEEEEec
Q psy14969        668 SRVNISVE  675 (687)
Q Consensus       668 DLILVVfA  675 (687)
                      |.|++.+.
T Consensus       107 d~v~~~~~  114 (218)
T 3dxy_A          107 RMVQLFFP  114 (218)
T ss_dssp             EEEEEESC
T ss_pred             heEEEeCC
Confidence            98888754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.88  E-value=5.4e-09  Score=103.57  Aligned_cols=91  Identities=18%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             cCCccc-CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccC
Q psy14969        573 ENCSYL-NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD  651 (687)
Q Consensus       573 G~GqTI-SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaS  651 (687)
                      ..|+.. ..|.+...+++.+  .+.++.+|||||||+|++|..|++..   ++|+|+|+++.+++.|++++...++    
T Consensus        19 ~~Gq~fl~~~~i~~~i~~~~--~~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~----   89 (299)
T 2h1r_A           19 FQGQHLLKNPGILDKIIYAA--KIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGY----   89 (299)
T ss_dssp             ----CEECCHHHHHHHHHHH--CCCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTC----
T ss_pred             ccccceecCHHHHHHHHHhc--CCCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC----
Confidence            345543 5788899999887  67889999999999999999999774   4999999999999999999987764    


Q ss_pred             CCcEEEEEcCCCCC---CccEEEEE
Q psy14969        652 EGVVNIMRTLPPQQ---DASRVNIS  673 (687)
Q Consensus       652 sgRI~LI~GDAeda---PFDLILVV  673 (687)
                       .++.++.+|+...   .||.|+..
T Consensus        90 -~~v~~~~~D~~~~~~~~~D~Vv~n  113 (299)
T 2h1r_A           90 -NNLEVYEGDAIKTVFPKFDVCTAN  113 (299)
T ss_dssp             -CCEEC----CCSSCCCCCSEEEEE
T ss_pred             -CceEEEECchhhCCcccCCEEEEc
Confidence             4788999987654   47877654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.88  E-value=8.6e-09  Score=97.91  Aligned_cols=74  Identities=22%  Similarity=0.143  Sum_probs=63.8

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--CccEEE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ--DASRVN  671 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda--PFDLIL  671 (687)
                      .+.++.+|||||||+|.++..+++..+  .+|+|+|+++.+++.|+++++..+.    ..++.++.+|....  .||+|+
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~fD~v~  134 (287)
T 1kpg_A           61 GLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSEN----LRSKRVLLAGWEQFDEPVDRIV  134 (287)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCC----CSCEEEEESCGGGCCCCCSEEE
T ss_pred             CCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCCCCeeEEE
Confidence            567889999999999999999997664  3999999999999999999998876    56899999987554  599987


Q ss_pred             EE
Q psy14969        672 IS  673 (687)
Q Consensus       672 VV  673 (687)
                      ..
T Consensus       135 ~~  136 (287)
T 1kpg_A          135 SI  136 (287)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.88  E-value=1.5e-08  Score=88.48  Aligned_cols=83  Identities=17%  Similarity=0.209  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCC-cEEEEEc
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG-VVNIMRT  660 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsg-RI~LI~G  660 (687)
                      .....+++.+  ...++.+|||||||+|.++..+++. +  .+|+|+|+++.+++.|++++...++    .. ++.++.+
T Consensus        39 ~~~~~l~~~~--~~~~~~~vLdiG~G~G~~~~~~~~~-~--~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~~~~  109 (194)
T 1dus_A           39 KGTKILVENV--VVDKDDDILDLGCGYGVIGIALADE-V--KSTTMADINRRAIKLAKENIKLNNL----DNYDIRVVHS  109 (194)
T ss_dssp             HHHHHHHHHC--CCCTTCEEEEETCTTSHHHHHHGGG-S--SEEEEEESCHHHHHHHHHHHHHTTC----TTSCEEEEEC
T ss_pred             hHHHHHHHHc--ccCCCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHcCC----CccceEEEEC
Confidence            4566677766  5668899999999999999999887 2  4999999999999999999998876    22 4999999


Q ss_pred             CCCC----CCccEEEEE
Q psy14969        661 LPPQ----QDASRVNIS  673 (687)
Q Consensus       661 DAed----aPFDLILVV  673 (687)
                      +...    ..||+|+..
T Consensus       110 d~~~~~~~~~~D~v~~~  126 (194)
T 1dus_A          110 DLYENVKDRKYNKIITN  126 (194)
T ss_dssp             STTTTCTTSCEEEEEEC
T ss_pred             chhcccccCCceEEEEC
Confidence            8653    358888653

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.87  E-value=3e-09  Score=102.67  Aligned_cols=72  Identities=19%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------CCc
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------QDA  667 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------aPF  667 (687)
                      .++.+|||||||+|+.+..+|... |.++|+++|+++.+++.|+++++..++     .++.++.+++..        .+|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l-----~~v~~~~~d~~~~~~~~~~~~~f  152 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGL-----KGARALWGRAEVLAREAGHREAY  152 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC-----SSEEEEECCHHHHTTSTTTTTCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-----CceEEEECcHHHhhcccccCCCc
Confidence            468899999999999999999887 578999999999999999999999987     359999998542        569


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |+|+..
T Consensus       153 D~I~s~  158 (249)
T 3g89_A          153 ARAVAR  158 (249)
T ss_dssp             EEEEEE
T ss_pred             eEEEEC
Confidence            988765

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.87  E-value=7.1e-09  Score=99.66  Aligned_cols=83  Identities=22%  Similarity=0.268  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-HAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-G~~VaSsgRI~LI~GD  661 (687)
                      ....+++.+  .+.++.+|||+|||+|.++..+++.+.|.++|+|+|+++.+++.|+++++.. +.     .++.++.+|
T Consensus        98 ~~~~~~~~~--~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-----~~v~~~~~d  170 (275)
T 1yb2_A           98 DASYIIMRC--GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-----GNVRTSRSD  170 (275)
T ss_dssp             --------C--CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-----TTEEEECSC
T ss_pred             hHHHHHHHc--CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-----CcEEEEECc
Confidence            444555555  6788999999999999999999998656789999999999999999999887 64     578899988


Q ss_pred             CCC----CCccEEEE
Q psy14969        662 PPQ----QDASRVNI  672 (687)
Q Consensus       662 Aed----aPFDLILV  672 (687)
                      +..    ..||+|+.
T Consensus       171 ~~~~~~~~~fD~Vi~  185 (275)
T 1yb2_A          171 IADFISDQMYDAVIA  185 (275)
T ss_dssp             TTTCCCSCCEEEEEE
T ss_pred             hhccCcCCCccEEEE
Confidence            654    35898876

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.87  E-value=2.2e-09  Score=100.74  Aligned_cols=73  Identities=16%  Similarity=0.240  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--------CCCc
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--------QQDA  667 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--------daPF  667 (687)
                      .++.+|||||||+|+.+..++... +.++|+|+|+++.|++.|+++++..++     .++.++.+++.        ...|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL-----ENTTFCHDRAETFGQRKDVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC-----SSEEEEESCHHHHTTCTTTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCEEEEeccHHHhcccccccCCc
Confidence            468899999999999999999865 567999999999999999999999886     35999998753        2468


Q ss_pred             cEEEEEe
Q psy14969        668 SRVNISV  674 (687)
Q Consensus       668 DLILVVf  674 (687)
                      |+|+...
T Consensus       143 D~V~~~~  149 (240)
T 1xdz_A          143 DIVTARA  149 (240)
T ss_dssp             EEEEEEC
T ss_pred             cEEEEec
Confidence            9887654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.86  E-value=1.1e-08  Score=102.26  Aligned_cols=90  Identities=23%  Similarity=0.249  Sum_probs=74.4

Q ss_pred             cccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcE
Q psy14969        576 SYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV  655 (687)
Q Consensus       576 qTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI  655 (687)
                      ..-..+.+.+.++..+  ...++.+|||+|||+|.++..+|...++.++|+|+|+++.+++.|++|++.+++    . ++
T Consensus       184 ~a~l~~~la~~l~~~~--~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~----~-~i  256 (354)
T 3tma_A          184 RGSLTPVLAQALLRLA--DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL----S-WI  256 (354)
T ss_dssp             SCSCCHHHHHHHHHHT--TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC----T-TC
T ss_pred             CCCcCHHHHHHHHHHh--CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC----C-ce
Confidence            3345666777777766  678889999999999999999999874567999999999999999999999987    3 79


Q ss_pred             EEEEcCCCC-----CCccEEEE
Q psy14969        656 NIMRTLPPQ-----QDASRVNI  672 (687)
Q Consensus       656 ~LI~GDAed-----aPFDLILV  672 (687)
                      .+..+|+..     .+||+|+.
T Consensus       257 ~~~~~D~~~~~~~~~~~D~Ii~  278 (354)
T 3tma_A          257 RFLRADARHLPRFFPEVDRILA  278 (354)
T ss_dssp             EEEECCGGGGGGTCCCCSEEEE
T ss_pred             EEEeCChhhCccccCCCCEEEE
Confidence            999999764     34676654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.86  E-value=2.1e-08  Score=90.84  Aligned_cols=78  Identities=17%  Similarity=0.086  Sum_probs=62.5

Q ss_pred             HHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-
Q psy14969        587 SLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-  665 (687)
Q Consensus       587 LLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-  665 (687)
                      +.+.+...+.++.+|||||||+|.++..+++...   +|+|+|+++.+++.|++++...+.      ++.++.+|.... 
T Consensus        28 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~   98 (227)
T 1ve3_A           28 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRES------NVEFIVGDARKLS   98 (227)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC------CCEEEECCTTSCC
T ss_pred             HHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCC------CceEEECchhcCC
Confidence            3344433456788999999999999999998853   899999999999999999987653      688888886543 


Q ss_pred             ----CccEEEEE
Q psy14969        666 ----DASRVNIS  673 (687)
Q Consensus       666 ----PFDLILVV  673 (687)
                          +||+|+..
T Consensus        99 ~~~~~~D~v~~~  110 (227)
T 1ve3_A           99 FEDKTFDYVIFI  110 (227)
T ss_dssp             SCTTCEEEEEEE
T ss_pred             CCCCcEEEEEEc
Confidence                48887665

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.85  E-value=9.5e-09  Score=96.46  Aligned_cols=75  Identities=19%  Similarity=0.245  Sum_probs=59.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------Q  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------a  665 (687)
                      .+.+|.+|||||||||+++..+++.++ .++|+|+|+++.|++.+.+..+..       .++.++.+|+..        .
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-------~~v~~~~~d~~~~~~~~~~~~  125 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-------NNIIPLLFDASKPWKYSGIVE  125 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-------SSEEEECSCTTCGGGTTTTCC
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-------CCeEEEEcCCCCchhhccccc
Confidence            457889999999999999999999985 679999999999887776665543       256777776543        3


Q ss_pred             CccEEEEEecC
Q psy14969        666 DASRVNISVEP  676 (687)
Q Consensus       666 PFDLILVVfAP  676 (687)
                      .||+|+..++.
T Consensus       126 ~fD~V~~~~~~  136 (210)
T 1nt2_A          126 KVDLIYQDIAQ  136 (210)
T ss_dssp             CEEEEEECCCS
T ss_pred             ceeEEEEeccC
Confidence            58998877543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.85  E-value=1.1e-08  Score=99.01  Aligned_cols=74  Identities=19%  Similarity=0.119  Sum_probs=64.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--CccEEE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ--DASRVN  671 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda--PFDLIL  671 (687)
                      .+.++.+|||||||+|.++..+++..+  .+|+|+|+++.+++.|++++...++    ..++.++.+|....  .||+|+
T Consensus        87 ~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~fD~v~  160 (318)
T 2fk8_A           87 DLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLLQGWEDFAEPVDRIV  160 (318)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCGGGCCCCCSEEE
T ss_pred             CCCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChHHCCCCcCEEE
Confidence            567889999999999999999998864  4999999999999999999998876    56799999987654  599987


Q ss_pred             EE
Q psy14969        672 IS  673 (687)
Q Consensus       672 VV  673 (687)
                      ..
T Consensus       161 ~~  162 (318)
T 2fk8_A          161 SI  162 (318)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.85  E-value=2.1e-08  Score=95.69  Aligned_cols=76  Identities=13%  Similarity=-0.010  Sum_probs=65.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----Ccc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFD  668 (687)
                      .+.++.+|||||||+|.++..+++..+  .+|+|+|+++.+++.|+++++..++    ..++.++.++....     .||
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD  152 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVKYGSFLEIPCEDNSYD  152 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEEECCTTSCSSCTTCEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEEcCcccCCCCCCCEe
Confidence            357889999999999999999998864  4999999999999999999998887    56899999997654     478


Q ss_pred             EEEEEec
Q psy14969        669 RVNISVE  675 (687)
Q Consensus       669 LILVVfA  675 (687)
                      +|+....
T Consensus       153 ~v~~~~~  159 (297)
T 2o57_A          153 FIWSQDA  159 (297)
T ss_dssp             EEEEESC
T ss_pred             EEEecch
Confidence            8877643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.84  E-value=1.1e-08  Score=92.19  Aligned_cols=70  Identities=20%  Similarity=0.270  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNI  672 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILV  672 (687)
                      ++.+|||||||+|+.+..+++.. |.++|+|+|+++.+++.|+++++..++     .++.++.++...    ..||+|+.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~D~i~~  138 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKL-----ENIEPVQSRVEEFPSEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEECCTTTSCCCSCEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEecchhhCCccCCcCEEEE
Confidence            47899999999999999999886 467999999999999999999999886     348999998754    34887764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.83  E-value=9.1e-09  Score=97.52  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .|.|.+. .+.+   ..+|.+|||||||+|+.+..+++..+  .+|+|||+++.+++.|+++.+..+.      ++.++.
T Consensus        47 ~~~m~~~-a~~~---~~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~------~~~~~~  114 (236)
T 3orh_A           47 TPYMHAL-AAAA---SSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTH------KVIPLK  114 (236)
T ss_dssp             HHHHHHH-HHHH---TTTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSS------EEEEEE
T ss_pred             HHHHHHH-HHhh---ccCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCC------ceEEEe
Confidence            4555443 3333   56889999999999999999987642  4899999999999999999888765      778888


Q ss_pred             cCC-------CCCCccEEEEEe
Q psy14969        660 TLP-------PQQDASRVNISV  674 (687)
Q Consensus       660 GDA-------edaPFDLILVVf  674 (687)
                      +++       +..+||.|+...
T Consensus       115 ~~a~~~~~~~~~~~FD~i~~D~  136 (236)
T 3orh_A          115 GLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             SCHHHHGGGSCTTCEEEEEECC
T ss_pred             ehHHhhcccccccCCceEEEee
Confidence            874       346699887644

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.83  E-value=1.8e-08  Score=104.48  Aligned_cols=87  Identities=24%  Similarity=0.319  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .+...+++.+  .+.++.+|||+|||+|.++..||+..   ++|+|+|+++.+++.|++|++.+++     .++.++.+|
T Consensus       273 ~l~~~~~~~l--~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-----~~v~f~~~d  342 (433)
T 1uwv_A          273 KMVARALEWL--DVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL-----QNVTFYHEN  342 (433)
T ss_dssp             HHHHHHHHHH--TCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECC
T ss_pred             HHHHHHHHhh--cCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEECC
Confidence            3455555555  46678899999999999999999874   4999999999999999999999887     379999999


Q ss_pred             CCC---------CCccEEEEEecCCCcC
Q psy14969        662 PPQ---------QDASRVNISVEPQKSG  680 (687)
Q Consensus       662 Aed---------aPFDLILVVfAP~K~g  680 (687)
                      +..         ..||+|++  .|+..+
T Consensus       343 ~~~~l~~~~~~~~~fD~Vv~--dPPr~g  368 (433)
T 1uwv_A          343 LEEDVTKQPWAKNGFDKVLL--DPARAG  368 (433)
T ss_dssp             TTSCCSSSGGGTTCCSEEEE--CCCTTC
T ss_pred             HHHHhhhhhhhcCCCCEEEE--CCCCcc
Confidence            865         25887754  677654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.83  E-value=6.2e-09  Score=100.23  Aligned_cols=75  Identities=9%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH---cCCCccCCCcEEEEEcCCCCC-----
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK---NHAHLLDEGVVNIMRTLPPQQ-----  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk---aG~~VaSsgRI~LI~GDAeda-----  665 (687)
                      ...++.+|||||||+|.++..+++.. |..+|+|+|+++.+++.|++++..   +++    .+++.++.+|....     
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----~~~v~~~~~D~~~~~~~~~  107 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF----SARIEVLEADVTLRAKARV  107 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTT----GGGEEEEECCTTCCHHHHH
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCC----cceEEEEeCCHHHHhhhhh
Confidence            45678899999999999999999987 467999999999999999999988   776    45799999997654     


Q ss_pred             -------CccEEEEE
Q psy14969        666 -------DASRVNIS  673 (687)
Q Consensus       666 -------PFDLILVV  673 (687)
                             .||+|+..
T Consensus       108 ~~~~~~~~fD~Vv~n  122 (260)
T 2ozv_A          108 EAGLPDEHFHHVIMN  122 (260)
T ss_dssp             HTTCCTTCEEEEEEC
T ss_pred             hhccCCCCcCEEEEC
Confidence                   48887665

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.83  E-value=4.7e-09  Score=97.81  Aligned_cols=79  Identities=13%  Similarity=0.116  Sum_probs=62.2

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+...+   +.++.+|||||||+|+.+..+++..  ..+|+|+|+++.|++.|+++.+..+.      ++.++.+++
T Consensus        49 ~~~~l~~~~---~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~------~v~~~~~d~  117 (236)
T 1zx0_A           49 YMHALAAAA---SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH------KVIPLKGLW  117 (236)
T ss_dssp             HHHHHHHHH---TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSS------EEEEEESCH
T ss_pred             HHHHHHhhc---CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcCC------CeEEEecCH
Confidence            344444443   5678899999999999999997653  24899999999999999998877654      789999875


Q ss_pred             C-------CCCccEEEE
Q psy14969        663 P-------QQDASRVNI  672 (687)
Q Consensus       663 e-------daPFDLILV  672 (687)
                      .       ...||+|+.
T Consensus       118 ~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A          118 EDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             HHHGGGSCTTCEEEEEE
T ss_pred             HHhhcccCCCceEEEEE
Confidence            3       345999987

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.82  E-value=7.5e-09  Score=98.42  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=63.5

Q ss_pred             cCC-CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CC
Q psy14969        594 KLK-PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQ  665 (687)
Q Consensus       594 dLk-pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------da  665 (687)
                      .+. ++.+|||||||+|..+..+++...  ++|+|+|+++.+++.|++++...++    .+++.++.+|..       ..
T Consensus        45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~----~~~v~~~~~D~~~~~~~~~~~  118 (259)
T 3lpm_A           45 YLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQL----EDQIEIIEYDLKKITDLIPKE  118 (259)
T ss_dssp             CCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTC----TTTEEEECSCGGGGGGTSCTT
T ss_pred             cCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCC----cccEEEEECcHHHhhhhhccC
Confidence            566 789999999999999999998853  3999999999999999999999988    668999999864       34


Q ss_pred             CccEEEEE
Q psy14969        666 DASRVNIS  673 (687)
Q Consensus       666 PFDLILVV  673 (687)
                      .||+|+..
T Consensus       119 ~fD~Ii~n  126 (259)
T 3lpm_A          119 RADIVTCN  126 (259)
T ss_dssp             CEEEEEEC
T ss_pred             CccEEEEC
Confidence            58887653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.82  E-value=1.7e-08  Score=95.34  Aligned_cols=77  Identities=16%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc--------CCCccCCCcEEEEEcCCCC--
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN--------HAHLLDEGVVNIMRTLPPQ--  664 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka--------G~~VaSsgRI~LI~GDAed--  664 (687)
                      +.++.+|||||||+|.++..+|+.. |.+.|+|||+++.+++.|+++++..        ++     .++.++.+|+..  
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-----~nv~~~~~D~~~~l  120 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-----QNINVLRGNAMKFL  120 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-----TTEEEEECCTTSCG
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-----CcEEEEeccHHHHH
Confidence            4577899999999999999999987 5679999999999999999998876        44     478999999764  


Q ss_pred             ------CCccEEEEEecCC
Q psy14969        665 ------QDASRVNISVEPQ  677 (687)
Q Consensus       665 ------aPFDLILVVfAP~  677 (687)
                            ..+|.|++.+.++
T Consensus       121 ~~~~~~~~~d~v~~~~p~p  139 (246)
T 2vdv_E          121 PNFFEKGQLSKMFFCFPDP  139 (246)
T ss_dssp             GGTSCTTCEEEEEEESCCC
T ss_pred             HHhccccccCEEEEECCCc
Confidence                  3477787776443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.82  E-value=7.4e-09  Score=95.43  Aligned_cols=73  Identities=19%  Similarity=0.261  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------CC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------QD  666 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------aP  666 (687)
                      +.++.+|||+|||+|+++..+++.+++.++|+|+|+++.+++.++++++..       .++.++.+|+..        ..
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-------~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTEEEEECCTTCGGGGTTTCCC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-------CCCEEEEccCCCcchhhcccCC
Confidence            668899999999999999999998766689999999999999999887654       368888888754        24


Q ss_pred             ccEEEEEe
Q psy14969        667 ASRVNISV  674 (687)
Q Consensus       667 FDLILVVf  674 (687)
                      ||+|+...
T Consensus       144 ~D~v~~~~  151 (227)
T 1g8a_A          144 VDVIFEDV  151 (227)
T ss_dssp             EEEEEECC
T ss_pred             ceEEEECC
Confidence            88887554

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.82  E-value=5.2e-09  Score=101.53  Aligned_cols=76  Identities=16%  Similarity=0.124  Sum_probs=64.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDL  669 (687)
                      .+.++.+|||||||+|+.+..++....+.++|+|+|+++.+++.|++++...++    ..++.++.+|....    .||+
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~fD~  190 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL----AGQITLHRQDAWKLDTREGYDL  190 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEECCGGGCCCCSCEEE
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECchhcCCccCCeEE
Confidence            578899999999999999999874444678999999999999999999998887    56799999997554    4787


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       191 v~~~  194 (305)
T 3ocj_A          191 LTSN  194 (305)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            7653

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.81  E-value=1e-08  Score=93.75  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=58.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH----HcCCCccCCCcEEEEEcCCCCCCc--
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR----KNHAHLLDEGVVNIMRTLPPQQDA--  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK----kaG~~VaSsgRI~LI~GDAedaPF--  667 (687)
                      .+.++.+|||||||+|+++..+++.. |.++|+|+|+++.|++.+.++.+    ..++     .++.++.+|+...|+  
T Consensus        24 ~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~l~~~~   97 (218)
T 3mq2_A           24 RSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGL-----PNLLYLWATAERLPPLS   97 (218)
T ss_dssp             HTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-----TTEEEEECCSTTCCSCC
T ss_pred             hccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-----CceEEEecchhhCCCCC
Confidence            46788999999999999999999986 57899999999998886544433    2332     479999999887776  


Q ss_pred             --cEEEEEe
Q psy14969        668 --SRVNISV  674 (687)
Q Consensus       668 --DLILVVf  674 (687)
                        |.+.+++
T Consensus        98 ~~d~v~~~~  106 (218)
T 3mq2_A           98 GVGELHVLM  106 (218)
T ss_dssp             CEEEEEEES
T ss_pred             CCCEEEEEc
Confidence              4555443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.81  E-value=1.1e-08  Score=95.57  Aligned_cols=72  Identities=11%  Similarity=0.172  Sum_probs=60.1

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------Q  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------a  665 (687)
                      .+.++.+|||||||+|+++..+++.++ .++|+|+|+++.+++.|+++++..       .++.++.+|+..        .
T Consensus        71 ~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~~~  142 (230)
T 1fbn_A           71 PIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER-------ENIIPILGDANKPQEYANIVE  142 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC-------TTEEEEECCTTCGGGGTTTSC
T ss_pred             CCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC-------CCeEEEECCCCCcccccccCc
Confidence            456789999999999999999999975 679999999999999999986543       378899888765        3


Q ss_pred             CccEEEEE
Q psy14969        666 DASRVNIS  673 (687)
Q Consensus       666 PFDLILVV  673 (687)
                      .||+|+..
T Consensus       143 ~~D~v~~~  150 (230)
T 1fbn_A          143 KVDVIYED  150 (230)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEEe
Confidence            47887743

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.81  E-value=4.8e-09  Score=96.72  Aligned_cols=84  Identities=15%  Similarity=0.020  Sum_probs=63.6

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC-CcEEEEEcC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE-GVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs-gRI~LI~GD  661 (687)
                      +...+++.+.. ..++.+|||+|||+|.++..++...  .++|+|+|+++.|++.|+++++..++    . .++.++.+|
T Consensus        40 ~~~~l~~~l~~-~~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~v~~~~~d  112 (201)
T 2ift_A           40 VKETLFNWLMP-YIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKC----SSEQAEVINQS  112 (201)
T ss_dssp             HHHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC----CTTTEEEECSC
T ss_pred             HHHHHHHHHHH-hcCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCC----CccceEEEECC
Confidence            44455554421 1267899999999999999877653  25899999999999999999999875    3 579999988


Q ss_pred             CC-------CCC-ccEEEEE
Q psy14969        662 PP-------QQD-ASRVNIS  673 (687)
Q Consensus       662 Ae-------daP-FDLILVV  673 (687)
                      +.       ..+ ||+|++.
T Consensus       113 ~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A          113 SLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             HHHHTTSCCSSCCEEEEEEC
T ss_pred             HHHHHHhhccCCCCCEEEEC
Confidence            43       235 8877653

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.81  E-value=8.6e-09  Score=95.13  Aligned_cols=84  Identities=11%  Similarity=-0.037  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .+...+++.+... .++.+|||+|||+|.++..+++...  .+|+|+|+++.|++.|+++++..++     .++.++.+|
T Consensus        40 ~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~D  111 (202)
T 2fpo_A           40 RVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKA-----GNARVVNSN  111 (202)
T ss_dssp             HHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSC
T ss_pred             HHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECC
Confidence            3445555554211 2678999999999999998776642  4899999999999999999999875     578999988


Q ss_pred             CCC------CCccEEEEE
Q psy14969        662 PPQ------QDASRVNIS  673 (687)
Q Consensus       662 Aed------aPFDLILVV  673 (687)
                      +..      ..||+|++.
T Consensus       112 ~~~~~~~~~~~fD~V~~~  129 (202)
T 2fpo_A          112 AMSFLAQKGTPHNIVFVD  129 (202)
T ss_dssp             HHHHHSSCCCCEEEEEEC
T ss_pred             HHHHHhhcCCCCCEEEEC
Confidence            532      358877653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.80  E-value=2.4e-08  Score=92.69  Aligned_cols=70  Identities=16%  Similarity=0.201  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRV  670 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLI  670 (687)
                      ..++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++...+.      ++.++.+|...    .+||+|
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~~~~~fD~v  109 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEIAFKNEFDAV  109 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGCCCCSCEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhcCC------ceEEEECChhhcccCCCccEE
Confidence            3567899999999999999999873   4899999999999999999988765      68888888653    358888


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      ++.
T Consensus       110 ~~~  112 (252)
T 1wzn_A          110 TMF  112 (252)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.80  E-value=7.9e-09  Score=100.61  Aligned_cols=51  Identities=24%  Similarity=0.307  Sum_probs=42.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      ..++.+|||||||+|+++..|++..+ ..+|+|+|+++.|++.|++++...+
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~   94 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYL   94 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhh
Confidence            34688999999999999999999874 5699999999999999999887654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.79  E-value=2.2e-08  Score=95.23  Aligned_cols=72  Identities=15%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPFDL  669 (687)
                      .++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++...++    ..++.++.++...      ..||+
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~fD~  139 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKGV----SDNMQFIHCAAQDVASHLETPVDL  139 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-CC----GGGEEEEESCGGGTGGGCSSCEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEEcCHHHhhhhcCCCceE
Confidence            446799999999999999999883   4999999999999999999998876    4689999998654      34898


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus       140 v~~~~  144 (285)
T 4htf_A          140 ILFHA  144 (285)
T ss_dssp             EEEES
T ss_pred             EEECc
Confidence            87753

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.79  E-value=1.9e-08  Score=100.18  Aligned_cols=76  Identities=18%  Similarity=0.308  Sum_probs=66.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFD  668 (687)
                      .+.+|.+|||+|||+|..|..+++.+++.++|+|+|+++.+++.|+++++..++     .++.++.+|+..     ..||
T Consensus       115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-----~~v~~~~~D~~~~~~~~~~fD  189 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-----LNVILFHSSSLHIGELNVEFD  189 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-----CSEEEESSCGGGGGGGCCCEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CeEEEEECChhhcccccccCC
Confidence            678999999999999999999999876568999999999999999999999986     368899988754     3589


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      .|++..
T Consensus       190 ~Il~d~  195 (315)
T 1ixk_A          190 KILLDA  195 (315)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            887653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.79  E-value=2.1e-08  Score=97.38  Aligned_cols=89  Identities=10%  Similarity=-0.089  Sum_probs=63.9

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH----------cCCC
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK----------NHAH  648 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk----------aG~~  648 (687)
                      ..|.+...+...+  .+.++.+|||||||+|+.+..||+..   .+|+|||+|+.|++.|+++...          .++.
T Consensus        52 ~~~~l~~~~~~~~--~~~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~  126 (252)
T 2gb4_A           52 GHQLLKKHLDTFL--KGQSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAK  126 (252)
T ss_dssp             CCHHHHHHHHHHH--TTCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCE
T ss_pred             CCHHHHHHHHHhc--cCCCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhccccccccccccccccc
Confidence            3455666554443  34578899999999999999999874   3899999999999999876531          0000


Q ss_pred             c--cCCCcEEEEEcCCCC------CCccEEEE
Q psy14969        649 L--LDEGVVNIMRTLPPQ------QDASRVNI  672 (687)
Q Consensus       649 V--aSsgRI~LI~GDAed------aPFDLILV  672 (687)
                      +  ....++.++++|...      .+||+|+.
T Consensus       127 ~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~  158 (252)
T 2gb4_A          127 VFKSSSGSISLYCCSIFDLPRANIGKFDRIWD  158 (252)
T ss_dssp             EEEETTSSEEEEESCTTTGGGGCCCCEEEEEE
T ss_pred             ccccCCCceEEEECccccCCcccCCCEEEEEE
Confidence            0  013579999999764      45888874

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.79  E-value=2.4e-08  Score=91.68  Aligned_cols=82  Identities=21%  Similarity=0.206  Sum_probs=64.5

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...++..+. ...++.+|||||||+|..+..+++.. |..+|+|+|+++.+++.|++++...       +++.++.+|..
T Consensus        32 ~~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~  102 (234)
T 3dtn_A           32 YGVSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGN-------LKVKYIEADYS  102 (234)
T ss_dssp             HHHHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSC-------TTEEEEESCTT
T ss_pred             HHHHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccC-------CCEEEEeCchh
Confidence            344444431 35678899999999999999999987 5679999999999999999986543       27899999976


Q ss_pred             CC----CccEEEEEe
Q psy14969        664 QQ----DASRVNISV  674 (687)
Q Consensus       664 da----PFDLILVVf  674 (687)
                      ..    .||+|+...
T Consensus       103 ~~~~~~~fD~v~~~~  117 (234)
T 3dtn_A          103 KYDFEEKYDMVVSAL  117 (234)
T ss_dssp             TCCCCSCEEEEEEES
T ss_pred             ccCCCCCceEEEEeC
Confidence            54    478887653

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.78  E-value=1.6e-08  Score=98.45  Aligned_cols=73  Identities=23%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASRV  670 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDLI  670 (687)
                      +++|.+|||+|||+|+++..+|+... . +|+|+|+++.+++.|+++++.+++    .+++.++.+|+...    .||+|
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~----~~~v~~~~~D~~~~~~~~~fD~V  196 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPGENIADRI  196 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCCCSCEEEE
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECCHHHhcccCCccEE
Confidence            56799999999999999999998864 3 799999999999999999999987    56799999998754    58877


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      ++.
T Consensus       197 i~~  199 (278)
T 2frn_A          197 LMG  199 (278)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.78  E-value=1.7e-08  Score=91.62  Aligned_cols=70  Identities=11%  Similarity=0.058  Sum_probs=58.9

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDL  669 (687)
                      ...++.+|||||||+|.++..+++...   +|+|+|+++.+++.|++++...       .++.++.+|....    .||+
T Consensus        48 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~~~~~~fD~  117 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW-------SHISWAATDILQFSTAELFDL  117 (216)
T ss_dssp             TTSSEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC-------SSEEEEECCTTTCCCSCCEEE
T ss_pred             ccCCCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC-------CCeEEEEcchhhCCCCCCccE
Confidence            456778999999999999999998853   8999999999999999987653       3789999987654    4898


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       118 v~~~  121 (216)
T 3ofk_A          118 IVVA  121 (216)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8776

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.78  E-value=2.4e-08  Score=90.40  Aligned_cols=76  Identities=17%  Similarity=0.159  Sum_probs=63.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----CccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFDL  669 (687)
                      ++++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++...++......++.++.++....     .||+
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  104 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDF  104 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeE
Confidence            5688999999999999999999883   4999999999999999999888776434455789999997654     4788


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       105 v~~~  108 (235)
T 3sm3_A          105 AVMQ  108 (235)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8765

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.78  E-value=2.2e-08  Score=94.30  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=63.7

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFD  668 (687)
                      .+.++.+|||||||+|.++..+++.. |.++|+|+|+++.+++.|++++...++     .++.++.+|...     ..||
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD  107 (276)
T 3mgg_A           34 VYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGI-----KNVKFLQANIFSLPFEDSSFD  107 (276)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCGGGCCSCTTCEE
T ss_pred             cCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEcccccCCCCCCCee
Confidence            45788999999999999999999985 567999999999999999999999886     468999888653     4588


Q ss_pred             EEEEE
Q psy14969        669 RVNIS  673 (687)
Q Consensus       669 LILVV  673 (687)
                      +|+..
T Consensus       108 ~v~~~  112 (276)
T 3mgg_A          108 HIFVC  112 (276)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.78  E-value=2.6e-08  Score=92.61  Aligned_cols=74  Identities=22%  Similarity=0.240  Sum_probs=61.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------Q  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------a  665 (687)
                      .+.++.+|||||||+|.++..+++.+++.++|+|+|+++.+++.+.++.+..       .++.++.+|+..        .
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~~~~~d~~~~~~~~~~~~  146 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNIIPVIEDARHPHKYRMLIA  146 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEEEECSCTTCGGGGGGGCC
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeEEEEcccCChhhhcccCC
Confidence            4678899999999999999999999866789999999999988888877764       368888888765        3


Q ss_pred             CccEEEEEe
Q psy14969        666 DASRVNISV  674 (687)
Q Consensus       666 PFDLILVVf  674 (687)
                      .||+|+...
T Consensus       147 ~~D~V~~~~  155 (233)
T 2ipx_A          147 MVDVIFADV  155 (233)
T ss_dssp             CEEEEEECC
T ss_pred             cEEEEEEcC
Confidence            488887644

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.78  E-value=3.2e-08  Score=91.54  Aligned_cols=83  Identities=13%  Similarity=0.097  Sum_probs=63.5

Q ss_pred             HHHHHHHHh---hhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        583 FIASSLEPA---LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       583 VvAlLLElL---kedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      ....+++.+   ...+.++.+|||||||+|.++..+++..   ++|+|+|+++.+++.|++++ ...     ..++.++.
T Consensus        22 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-~~~-----~~~~~~~~   92 (263)
T 2yqz_A           22 VAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKI-AGV-----DRKVQVVQ   92 (263)
T ss_dssp             HHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHT-TTS-----CTTEEEEE
T ss_pred             HHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHh-hcc-----CCceEEEE
Confidence            344444444   2256788999999999999999999773   49999999999999999987 222     35789999


Q ss_pred             cCCCCC-----CccEEEEEe
Q psy14969        660 TLPPQQ-----DASRVNISV  674 (687)
Q Consensus       660 GDAeda-----PFDLILVVf  674 (687)
                      ++....     .||+|+...
T Consensus        93 ~d~~~~~~~~~~fD~v~~~~  112 (263)
T 2yqz_A           93 ADARAIPLPDESVHGVIVVH  112 (263)
T ss_dssp             SCTTSCCSCTTCEEEEEEES
T ss_pred             cccccCCCCCCCeeEEEECC
Confidence            987654     378887653

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.77  E-value=1.4e-08  Score=97.54  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=64.7

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..+.+...+++.+  .+.++.+|||||||+|++|..+++...   +|+|+|+++.+++.|++++...       .++.+
T Consensus        13 l~d~~~~~~i~~~~--~~~~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~-------~~v~~   80 (244)
T 1qam_A           13 ITSKHNIDKIMTNI--RLNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDH-------DNFQV   80 (244)
T ss_dssp             CCCHHHHHHHHTTC--CCCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTC-------CSEEE
T ss_pred             cCCHHHHHHHHHhC--CCCCCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhccC-------CCeEE
Confidence            45667888888776  577889999999999999999998863   8999999999999999987532       47899


Q ss_pred             EEcCCCCCCc
Q psy14969        658 MRTLPPQQDA  667 (687)
Q Consensus       658 I~GDAedaPF  667 (687)
                      +.+|+...++
T Consensus        81 ~~~D~~~~~~   90 (244)
T 1qam_A           81 LNKDILQFKF   90 (244)
T ss_dssp             ECCCGGGCCC
T ss_pred             EEChHHhCCc
Confidence            9999766543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.77  E-value=4.4e-08  Score=86.74  Aligned_cols=78  Identities=15%  Similarity=0.075  Sum_probs=62.8

Q ss_pred             HHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--
Q psy14969        587 SLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--  664 (687)
Q Consensus       587 LLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--  664 (687)
                      +++.+  ...++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++...++     .++.++.+|...  
T Consensus        24 l~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~   93 (199)
T 2xvm_A           24 VLEAV--KVVKPGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIENL-----DNLHTRVVDLNNLT   93 (199)
T ss_dssp             HHHHT--TTSCSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEECCGGGCC
T ss_pred             HHHHh--hccCCCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhCCC-----CCcEEEEcchhhCC
Confidence            34444  35577899999999999999999873   4999999999999999999988775     358888888654  


Q ss_pred             --CCccEEEEEe
Q psy14969        665 --QDASRVNISV  674 (687)
Q Consensus       665 --aPFDLILVVf  674 (687)
                        ..||+|+...
T Consensus        94 ~~~~~D~v~~~~  105 (199)
T 2xvm_A           94 FDRQYDFILSTV  105 (199)
T ss_dssp             CCCCEEEEEEES
T ss_pred             CCCCceEEEEcc
Confidence              4578887653

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.76  E-value=2.6e-08  Score=101.30  Aligned_cols=86  Identities=16%  Similarity=0.090  Sum_probs=70.9

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..+.+.+.++..+   ..++.+|||+|||+|.++..+|... +.++|+|+|+++.|++.|++|++.+++    .+++.+.
T Consensus       202 l~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl----~~~i~~~  273 (373)
T 3tm4_A          202 LKASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGV----LDKIKFI  273 (373)
T ss_dssp             CCHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTC----GGGCEEE
T ss_pred             ccHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCC----CCceEEE
Confidence            3566777766654   6788999999999999999999886 456899999999999999999999987    5689999


Q ss_pred             EcCCCC-----CCccEEEE
Q psy14969        659 RTLPPQ-----QDASRVNI  672 (687)
Q Consensus       659 ~GDAed-----aPFDLILV  672 (687)
                      .+|+..     ..||+|+.
T Consensus       274 ~~D~~~~~~~~~~fD~Ii~  292 (373)
T 3tm4_A          274 QGDATQLSQYVDSVDFAIS  292 (373)
T ss_dssp             ECCGGGGGGTCSCEEEEEE
T ss_pred             ECChhhCCcccCCcCEEEE
Confidence            999764     34776655

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.76  E-value=2.5e-08  Score=94.99  Aligned_cols=70  Identities=23%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVN  671 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLIL  671 (687)
                      .++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++...++      ++.++.+|...    ..||+|+
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~fD~i~  189 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKENL------NISTALYDINAANIQENYDFIV  189 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCGGGCCCCSCEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHcCC------ceEEEEeccccccccCCccEEE
Confidence            378899999999999999999884   3999999999999999999999875      78899888654    4589887


Q ss_pred             EEe
Q psy14969        672 ISV  674 (687)
Q Consensus       672 VVf  674 (687)
                      ...
T Consensus       190 ~~~  192 (286)
T 3m70_A          190 STV  192 (286)
T ss_dssp             ECS
T ss_pred             Ecc
Confidence            653

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.76  E-value=2.4e-08  Score=99.46  Aligned_cols=80  Identities=10%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV  655 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI  655 (687)
                      .+..+.+...+++.+  .+.++.+|||||||+|.+|..|++...+ .++|+|+|+++.|++.|+++.   .      .++
T Consensus        24 fL~d~~i~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~------~~v   92 (279)
T 3uzu_A           24 FLVDHGVIDAIVAAI--RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G------ELL   92 (279)
T ss_dssp             EECCHHHHHHHHHHH--CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G------GGE
T ss_pred             ccCCHHHHHHHHHhc--CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C------CCc
Confidence            356778899999888  6888999999999999999999998752 255999999999999999983   2      378


Q ss_pred             EEEEcCCCCCCc
Q psy14969        656 NIMRTLPPQQDA  667 (687)
Q Consensus       656 ~LI~GDAedaPF  667 (687)
                      .++.+|+...++
T Consensus        93 ~~i~~D~~~~~~  104 (279)
T 3uzu_A           93 ELHAGDALTFDF  104 (279)
T ss_dssp             EEEESCGGGCCG
T ss_pred             EEEECChhcCCh
Confidence            999999887765

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.75  E-value=3.4e-08  Score=99.44  Aligned_cols=76  Identities=12%  Similarity=0.216  Sum_probs=66.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------Q  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------a  665 (687)
                      .+++|.+|||+|||+|+.|..+|+++++.++|+|+|+++.+++.+++|+++.++     .++.++.+|+..        .
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~~~~~~  173 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-----SCCELAEEDFLAVSPSDPRYH  173 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCGGGSCTTCGGGT
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCChHhcCccccccC
Confidence            678999999999999999999999886678999999999999999999999986     468999988643        2


Q ss_pred             CccEEEEEe
Q psy14969        666 DASRVNISV  674 (687)
Q Consensus       666 PFDLILVVf  674 (687)
                      .||.|++..
T Consensus       174 ~fD~Vl~D~  182 (309)
T 2b9e_A          174 EVHYILLDP  182 (309)
T ss_dssp             TEEEEEECC
T ss_pred             CCCEEEEcC
Confidence            578887654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.75  E-value=3.5e-08  Score=95.71  Aligned_cols=76  Identities=13%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---------C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------Q  664 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------d  664 (687)
                      .+.+|.+|||+|||+|..|..+++.....++|+|+|+++.+++.++++++..++     .++.++.+|+.         .
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-----~~v~~~~~D~~~~~~~~~~~~  154 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-----LNTIIINADMRKYKDYLLKNE  154 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCHHHHHHHHHHTT
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-----CcEEEEeCChHhcchhhhhcc
Confidence            678899999999999999999999875348999999999999999999999886     37899999863         3


Q ss_pred             CCccEEEEEe
Q psy14969        665 QDASRVNISV  674 (687)
Q Consensus       665 aPFDLILVVf  674 (687)
                      ..||.|++..
T Consensus       155 ~~fD~Vl~d~  164 (274)
T 3ajd_A          155 IFFDKILLDA  164 (274)
T ss_dssp             CCEEEEEEEE
T ss_pred             ccCCEEEEcC
Confidence            4689887653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.75  E-value=1.9e-08  Score=92.88  Aligned_cols=80  Identities=16%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+++.+  .+.++.+|||||||+|.++..+++..+  ++|+|+|+++.+++.|++++...       .++.++.+|.
T Consensus        43 ~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~  111 (266)
T 3ujc_A           43 ATKKILSDI--ELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVSGN-------NKIIFEANDI  111 (266)
T ss_dssp             HHHHHTTTC--CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHTCCSC-------TTEEEEECCT
T ss_pred             HHHHHHHhc--CCCCCCEEEEECCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhhcC-------CCeEEEECcc
Confidence            445555544  567889999999999999999998863  59999999999999999875443       4788999887


Q ss_pred             CC-----CCccEEEEE
Q psy14969        663 PQ-----QDASRVNIS  673 (687)
Q Consensus       663 ed-----aPFDLILVV  673 (687)
                      ..     ..||+|+..
T Consensus       112 ~~~~~~~~~fD~v~~~  127 (266)
T 3ujc_A          112 LTKEFPENNFDLIYSR  127 (266)
T ss_dssp             TTCCCCTTCEEEEEEE
T ss_pred             ccCCCCCCcEEEEeHH
Confidence            54     347888765

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.75  E-value=3.2e-08  Score=88.91  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      +.++ +|||||||+|.++..+++..   .+|+|+|+++.+++.|++++...+.      ++.++.++...     ..||+
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~fD~   97 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEKGV------KITTVQSNLADFDIVADAWEG   97 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHTC------CEEEECCBTTTBSCCTTTCSE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCC------ceEEEEcChhhcCCCcCCccE
Confidence            4566 99999999999999998763   4999999999999999999988765      67888887653     35899


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+..+
T Consensus        98 v~~~~  102 (202)
T 2kw5_A           98 IVSIF  102 (202)
T ss_dssp             EEEEC
T ss_pred             EEEEh
Confidence            98764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.74  E-value=2.3e-08  Score=100.78  Aligned_cols=85  Identities=12%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      |.+...+++.+  .+.++.+|||+|||+|..+..+++.++ .++|+|+|+++.|++.|+++++..+      .++.++.+
T Consensus        12 pvLl~e~l~~L--~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g------~~v~~v~~   82 (301)
T 1m6y_A           12 PVMVREVIEFL--KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKV   82 (301)
T ss_dssp             CTTHHHHHHHH--CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEEC
T ss_pred             HHHHHHHHHhc--CCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEC
Confidence            44667777777  678899999999999999999999874 6799999999999999999988765      37999999


Q ss_pred             CCCC----------CCccEEEEEe
Q psy14969        661 LPPQ----------QDASRVNISV  674 (687)
Q Consensus       661 DAed----------aPFDLILVVf  674 (687)
                      +...          .+||.|++..
T Consensus        83 d~~~l~~~l~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           83 SYREADFLLKTLGIEKVDGILMDL  106 (301)
T ss_dssp             CGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEcC
Confidence            9754          3588887643

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.74  E-value=2.7e-08  Score=92.39  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=54.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPF  667 (687)
                      +.++.+|||||||+|+.+..+++..   ++|+|+|+++.+++.|+++    .      .++.++.+|..       ...|
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~----~------~~~~~~~~d~~~~~~~~~~~~f  112 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARAN----A------PHADVYEWNGKGELPAGLGAPF  112 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHH----C------TTSEEEECCSCSSCCTTCCCCE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHh----C------CCceEEEcchhhccCCcCCCCE
Confidence            5788999999999999999999883   4999999999999999988    1      25778888862       3458


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |+|+..
T Consensus       113 D~v~~~  118 (226)
T 3m33_A          113 GLIVSR  118 (226)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            888776

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.73  E-value=1.7e-08  Score=100.15  Aligned_cols=81  Identities=11%  Similarity=0.062  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+++.+  .+.++.+|||||||+|.++..|++...   +|+|+|+++.|++.|+++++...+      ...+...+.
T Consensus        33 ~~~~il~~l--~l~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v------~~~~~~~~~  101 (261)
T 3iv6_A           33 DRENDIFLE--NIVPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCV------TIDLLDITA  101 (261)
T ss_dssp             HHHHHHHTT--TCCTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCC------EEEECCTTS
T ss_pred             HHHHHHHhc--CCCCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccc------eeeeeeccc
Confidence            455666666  678899999999999999999998753   899999999999999998766522      344444333


Q ss_pred             ---C--CCCccEEEEEe
Q psy14969        663 ---P--QQDASRVNISV  674 (687)
Q Consensus       663 ---e--daPFDLILVVf  674 (687)
                         .  ..+||+|+...
T Consensus       102 ~~~~~~~~~fD~Vv~~~  118 (261)
T 3iv6_A          102 EIPKELAGHFDFVLNDR  118 (261)
T ss_dssp             CCCGGGTTCCSEEEEES
T ss_pred             ccccccCCCccEEEEhh
Confidence               1  35799998764

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.73  E-value=2.2e-08  Score=97.46  Aligned_cols=74  Identities=22%  Similarity=0.211  Sum_probs=63.8

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDL  669 (687)
                      .+.++.+|||+|||+|.++..+|+..+ .++|+|+|+++.+++.|++|++.+++     .++.++.+|+...    .||+
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l-----~~~~~~~~d~~~~~~~~~~D~  189 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKL-----NNVIPILADNRDVELKDVADR  189 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTC-----SSEEEEESCGGGCCCTTCEEE
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-----CCEEEEECChHHcCccCCceE
Confidence            467889999999999999999999864 67999999999999999999999987     3678999997654    5787


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |++.
T Consensus       190 Vi~d  193 (272)
T 3a27_A          190 VIMG  193 (272)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.73  E-value=2.1e-08  Score=114.86  Aligned_cols=124  Identities=10%  Similarity=0.031  Sum_probs=82.9

Q ss_pred             HHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHH---HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCC
Q psy14969        548 LMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPS---FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPH  622 (687)
Q Consensus       548 AMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~---VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~  622 (687)
                      .+..++|+.+++..  ...|.+.+.+.....+...|.   ....+++.+  ...++.+|||||||+|+++..|++..++.
T Consensus       669 ~~slLsre~~fEyals~lay~dea~p~me~gtFsPPL~eqRle~LLelL--~~~~g~rVLDVGCGTG~lai~LAr~g~p~  746 (950)
T 3htx_A          669 IRSLLSERPCLNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHI--RESSASTLVDFGCGSGSLLDSLLDYPTSL  746 (950)
T ss_dssp             HHHHTTSCEEEEEEEEEEEEECSCCCCCCCCCSSSCHHHHHHHHHHHHH--HHSCCSEEEEETCSSSHHHHHHTSSCCCC
T ss_pred             hhhhcchhhhhhHHhhhhccccchhhHHhhCcCCchHHHHHHHHHHHHh--cccCCCEEEEECCCCCHHHHHHHHhCCCC
Confidence            33445555555332  124444444444444444443   344445555  34578999999999999999999887455


Q ss_pred             cEEEEEeCCHHHHHHHHHHHHHcCC-CccCCCcEEEEEcCCCC-----CCccEEEEE
Q psy14969        623 GKVYSLDHMEYLVNFSKENIRKNHA-HLLDEGVVNIMRTLPPQ-----QDASRVNIS  673 (687)
Q Consensus       623 GrVtGIDISpeAVE~ARKNLKkaG~-~VaSsgRI~LI~GDAed-----aPFDLILVV  673 (687)
                      ++|+|||+++.|++.|++++..... ......++.++.+|+..     ..||+|+..
T Consensus       747 a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~~  803 (950)
T 3htx_A          747 QTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCL  803 (950)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEEE
T ss_pred             CeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEEe
Confidence            6999999999999999998875421 00112479999999864     458988875

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.73  E-value=4.1e-08  Score=94.01  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CccCCCcEEEEEcCCCC--------C
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA-HLLDEGVVNIMRTLPPQ--------Q  665 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~-~VaSsgRI~LI~GDAed--------a  665 (687)
                      ..++.+|||||||+|.++..||+.. |...|+|||+++.|++.|+++++.... ......++.++.+|+..        .
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~  122 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG  122 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence            4467799999999999999999886 578999999999999999998875210 00012579999999764        3


Q ss_pred             CccEEEEEec
Q psy14969        666 DASRVNISVE  675 (687)
Q Consensus       666 PFDLILVVfA  675 (687)
                      .||.|++.+.
T Consensus       123 ~~D~v~~~~~  132 (235)
T 3ckk_A          123 QLTKMFFLFP  132 (235)
T ss_dssp             CEEEEEEESC
T ss_pred             CeeEEEEeCC
Confidence            4788887763

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.72  E-value=9e-08  Score=90.14  Aligned_cols=76  Identities=21%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPF  667 (687)
                      .+.++.+|||||||+|..+..+++..  .++|+|+|+++.+++.|++++...+.    ..++.++.+|...      ..|
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~f  134 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHMDLGKEF  134 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCC----SSEEEEEESCTTTSCCCCSSCE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCC----CccEEEEECCccccccCCCCCc
Confidence            36788999999999999999988763  45999999999999999999998775    4578999998754      347


Q ss_pred             cEEEEEec
Q psy14969        668 SRVNISVE  675 (687)
Q Consensus       668 DLILVVfA  675 (687)
                      |+|+....
T Consensus       135 D~v~~~~~  142 (298)
T 1ri5_A          135 DVISSQFS  142 (298)
T ss_dssp             EEEEEESC
T ss_pred             CEEEECch
Confidence            88877643

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.71  E-value=2.5e-08  Score=97.17  Aligned_cols=79  Identities=19%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      .+..+.+...+++.+  .+.++.+|||||||+|.+|..+++..  .++|+|+|+++.|++.|+++    .     ..++.
T Consensus        13 fl~d~~i~~~iv~~~--~~~~~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~----~-----~~~v~   79 (249)
T 3ftd_A           13 LLVSEGVLKKIAEEL--NIEEGNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSI----G-----DERLE   79 (249)
T ss_dssp             CEECHHHHHHHHHHT--TCCTTCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTS----C-----CTTEE
T ss_pred             ccCCHHHHHHHHHhc--CCCCcCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhc----c-----CCCeE
Confidence            345678899999887  67789999999999999999999872  35999999999999999877    1     24799


Q ss_pred             EEEcCCCCCCcc
Q psy14969        657 IMRTLPPQQDAS  668 (687)
Q Consensus       657 LI~GDAedaPFD  668 (687)
                      ++.+|+...++.
T Consensus        80 ~i~~D~~~~~~~   91 (249)
T 3ftd_A           80 VINEDASKFPFC   91 (249)
T ss_dssp             EECSCTTTCCGG
T ss_pred             EEEcchhhCChh
Confidence            999999887653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.71  E-value=4.2e-08  Score=89.38  Aligned_cols=83  Identities=11%  Similarity=0.097  Sum_probs=64.3

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+.+.+.....++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++...+.      ++.++.++.
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~d~   93 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGL------KPRLACQDI   93 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTC------CCEEECCCG
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcCC------CeEEEeccc
Confidence            4555555553223477899999999999999998874   3899999999999999999988764      678888876


Q ss_pred             CC----CCccEEEEEe
Q psy14969        663 PQ----QDASRVNISV  674 (687)
Q Consensus       663 ed----aPFDLILVVf  674 (687)
                      ..    ..||+|+...
T Consensus        94 ~~~~~~~~fD~v~~~~  109 (246)
T 1y8c_A           94 SNLNINRKFDLITCCL  109 (246)
T ss_dssp             GGCCCSCCEEEEEECT
T ss_pred             ccCCccCCceEEEEcC
Confidence            54    3578887643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.71  E-value=4.7e-08  Score=89.41  Aligned_cols=70  Identities=19%  Similarity=0.306  Sum_probs=58.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRV  670 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLI  670 (687)
                      +.++.+|||||||+|.++..+++.    .+|+|+|+++.+++.|++++...+.      ++.++.++...    ..||+|
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~fD~v  100 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNR------HVDFWVQDMRELELPEPVDAI  100 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTC------CCEEEECCGGGCCCSSCEEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCC------ceEEEEcChhhcCCCCCcCEE
Confidence            567789999999999999998876    3899999999999999999987654      67888888654    358888


Q ss_pred             EEEe
Q psy14969        671 NISV  674 (687)
Q Consensus       671 LVVf  674 (687)
                      ++..
T Consensus       101 ~~~~  104 (243)
T 3d2l_A          101 TILC  104 (243)
T ss_dssp             EECT
T ss_pred             EEeC
Confidence            7643

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.71  E-value=1.8e-08  Score=95.65  Aligned_cols=73  Identities=16%  Similarity=0.099  Sum_probs=58.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCC-HHHHHHH---HHHHHHcCCCccCCCcEEEEEcCCCCCC---c
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHM-EYLVNFS---KENIRKNHAHLLDEGVVNIMRTLPPQQD---A  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDIS-peAVE~A---RKNLKkaG~~VaSsgRI~LI~GDAedaP---F  667 (687)
                      ..++.+|||||||+|.++..+|+.. +.++|+|||++ +.|++.|   ++++...++     .++.++.+++...|   +
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-----~~v~~~~~d~~~l~~~~~   95 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGL-----SNVVFVIAAAESLPFELK   95 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-----SSEEEECCBTTBCCGGGT
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-----CCeEEEEcCHHHhhhhcc
Confidence            5688899999999999999999765 57899999999 7777666   777766665     46899999988765   3


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |.|..+
T Consensus        96 d~v~~i  101 (225)
T 3p2e_A           96 NIADSI  101 (225)
T ss_dssp             TCEEEE
T ss_pred             CeEEEE
Confidence            555444

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.71  E-value=3e-08  Score=99.39  Aligned_cols=78  Identities=22%  Similarity=0.254  Sum_probs=66.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASRV  670 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDLI  670 (687)
                      +++|.+|||+|||+|+++..+|+..  .++|+|+|+++.+++.|++|++.+++    .+++.++.+|+...    .||.|
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v----~~~v~~~~~D~~~~~~~~~~D~V  196 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPGENIADRI  196 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCCCSCEEEE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCcHHHhccccCCCEE
Confidence            6789999999999999999999874  35899999999999999999999998    78899999997653    48887


Q ss_pred             EEEecCCCc
Q psy14969        671 NISVEPQKS  679 (687)
Q Consensus       671 LVVfAP~K~  679 (687)
                      ++.. |...
T Consensus       197 i~~~-p~~~  204 (278)
T 3k6r_A          197 LMGY-VVRT  204 (278)
T ss_dssp             EECC-CSSG
T ss_pred             EECC-CCcH
Confidence            6543 4443

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.71  E-value=4e-08  Score=97.75  Aligned_cols=76  Identities=20%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      .+..|.+...+++.+  .+.++ +|||||||+|.+|..|++...   +|+|+|+++.|++.+++++..        .++.
T Consensus        29 fL~d~~i~~~Iv~~~--~~~~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~--------~~v~   94 (271)
T 3fut_A           29 FLVSEAHLRRIVEAA--RPFTG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG--------LPVR   94 (271)
T ss_dssp             EECCHHHHHHHHHHH--CCCCS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT--------SSEE
T ss_pred             ccCCHHHHHHHHHhc--CCCCC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC--------CCEE
Confidence            345778999999988  68888 999999999999999998863   899999999999999988652        4789


Q ss_pred             EEEcCCCCCC
Q psy14969        657 IMRTLPPQQD  666 (687)
Q Consensus       657 LI~GDAedaP  666 (687)
                      +++||+...+
T Consensus        95 vi~~D~l~~~  104 (271)
T 3fut_A           95 LVFQDALLYP  104 (271)
T ss_dssp             EEESCGGGSC
T ss_pred             EEECChhhCC
Confidence            9999987654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.71  E-value=3.9e-08  Score=99.71  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=57.3

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+++.+  .. .+.+|||+|||+|.++..+|+.+.   +|+|+|+++.+++.|++|++.+++     .++.++.+|+
T Consensus       202 l~~~~~~~~--~~-~~~~vLDl~cG~G~~~l~la~~~~---~V~gvd~~~~ai~~a~~n~~~ng~-----~~v~~~~~d~  270 (369)
T 3bt7_A          202 MLEWALDVT--KG-SKGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNIAANHI-----DNVQIIRMAA  270 (369)
T ss_dssp             HHHHHHHHT--TT-CCSEEEEESCTTSHHHHHHGGGSS---EEEEECCCHHHHHHHHHHHHHTTC-----CSEEEECCCS
T ss_pred             HHHHHHHHh--hc-CCCEEEEccCCCCHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC-----CceEEEECCH
Confidence            444555544  22 367899999999999999998653   899999999999999999999886     4789999886


Q ss_pred             C
Q psy14969        663 P  663 (687)
Q Consensus       663 e  663 (687)
                      .
T Consensus       271 ~  271 (369)
T 3bt7_A          271 E  271 (369)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.70  E-value=4.3e-08  Score=94.41  Aligned_cols=85  Identities=13%  Similarity=0.015  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      ......+++.+   ..++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++...+..  ...++.++.+
T Consensus        69 ~~~~~~~~~~~---~~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~  140 (299)
T 3g2m_A           69 TSEAREFATRT---GPVSGPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPAD--VRDRCTLVQG  140 (299)
T ss_dssp             HHHHHHHHHHH---CCCCSCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHH--HHTTEEEEEC
T ss_pred             cHHHHHHHHhh---CCCCCcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccc--cccceEEEeC
Confidence            34555666665   2344599999999999999999873   48999999999999999999887630  0147899999


Q ss_pred             CCCCC----CccEEEEE
Q psy14969        661 LPPQQ----DASRVNIS  673 (687)
Q Consensus       661 DAeda----PFDLILVV  673 (687)
                      |....    .||+|++.
T Consensus       141 d~~~~~~~~~fD~v~~~  157 (299)
T 3g2m_A          141 DMSAFALDKRFGTVVIS  157 (299)
T ss_dssp             BTTBCCCSCCEEEEEEC
T ss_pred             chhcCCcCCCcCEEEEC
Confidence            87654    47877754

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.70  E-value=1.1e-07  Score=99.70  Aligned_cols=88  Identities=17%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      +.....+.+.+.. +.++.+|||+|||+|.++..+|+...   +|+|+|+++.|++.|++|++.+++     . +.++.+
T Consensus       275 ~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl-----~-v~~~~~  344 (425)
T 2jjq_A          275 SYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNV-----D-AEFEVA  344 (425)
T ss_dssp             HHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTC-----C-EEEEEC
T ss_pred             HHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCC-----c-EEEEEC
Confidence            3344444444332 56788999999999999999998753   899999999999999999999887     3 899999


Q ss_pred             CCCCC---CccEEEEEecCCCcC
Q psy14969        661 LPPQQ---DASRVNISVEPQKSG  680 (687)
Q Consensus       661 DAeda---PFDLILVVfAP~K~g  680 (687)
                      |+...   .||+|++  .|++.+
T Consensus       345 d~~~~~~~~fD~Vv~--dPPr~g  365 (425)
T 2jjq_A          345 SDREVSVKGFDTVIV--DPPRAG  365 (425)
T ss_dssp             CTTTCCCTTCSEEEE--CCCTTC
T ss_pred             ChHHcCccCCCEEEE--cCCccc
Confidence            98754   5887765  566654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.70  E-value=4.7e-08  Score=93.81  Aligned_cols=80  Identities=23%  Similarity=0.263  Sum_probs=63.7

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-  663 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-  663 (687)
                      ..+++.+...+.++.+|||+|||+|.++..+++...   +|+|+|+++.+++.|+++++.+++     . +.+..++.. 
T Consensus       108 ~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~-----~-v~~~~~d~~~  178 (254)
T 2nxc_A          108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGV-----R-PRFLEGSLEA  178 (254)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTC-----C-CEEEESCHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCC-----c-EEEEECChhh
Confidence            334444433467889999999999999999888642   999999999999999999999886     2 788888753 


Q ss_pred             ---CCCccEEEEE
Q psy14969        664 ---QQDASRVNIS  673 (687)
Q Consensus       664 ---daPFDLILVV  673 (687)
                         ..+||+|+..
T Consensus       179 ~~~~~~fD~Vv~n  191 (254)
T 2nxc_A          179 ALPFGPFDLLVAN  191 (254)
T ss_dssp             HGGGCCEEEEEEE
T ss_pred             cCcCCCCCEEEEC
Confidence               3568988764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.69  E-value=2.8e-08  Score=91.77  Aligned_cols=71  Identities=15%  Similarity=0.039  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccEEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASRVNI  672 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDLILV  672 (687)
                      ++.+|||||||+|.++..+++.   .++|+|+|+++.+++.|++++...+.    ..++.++.+|....    .||+|+.
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~fD~v~~  138 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPK----AEYFSFVKEDVFTWRPTELFDLIFD  138 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGG----GGGEEEECCCTTTCCCSSCEEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCC----CcceEEEECchhcCCCCCCeeEEEE
Confidence            3459999999999999988753   46999999999999999999887544    45789999987643    5898876


Q ss_pred             Ee
Q psy14969        673 SV  674 (687)
Q Consensus       673 Vf  674 (687)
                      ..
T Consensus       139 ~~  140 (235)
T 3lcc_A          139 YV  140 (235)
T ss_dssp             ES
T ss_pred             Ch
Confidence            53

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.69  E-value=4.1e-08  Score=99.42  Aligned_cols=78  Identities=21%  Similarity=0.313  Sum_probs=64.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-----CCCccCCCcEEEEEcCCCCC----
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-----HAHLLDEGVVNIMRTLPPQQ----  665 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-----G~~VaSsgRI~LI~GDAeda----  665 (687)
                      +.++.+|||||||+|..+..+++..++.++|+|+|+++.+++.|+++++..     |.  ....++.++.++....    
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~--~~~~~v~~~~~d~~~l~~~~  158 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS--PSRSNVRFLKGFIENLATAE  158 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSS--TTCCCEEEEESCTTCGGGCB
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccc--cCCCceEEEEccHHHhhhcc
Confidence            457889999999999999999999877789999999999999999998865     31  1125799999987653    


Q ss_pred             -------CccEEEEEe
Q psy14969        666 -------DASRVNISV  674 (687)
Q Consensus       666 -------PFDLILVVf  674 (687)
                             .||+|+...
T Consensus       159 ~~~~~~~~fD~V~~~~  174 (383)
T 4fsd_A          159 PEGVPDSSVDIVISNC  174 (383)
T ss_dssp             SCCCCTTCEEEEEEES
T ss_pred             cCCCCCCCEEEEEEcc
Confidence                   589887654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.67  E-value=5.3e-08  Score=91.40  Aligned_cols=78  Identities=14%  Similarity=0.049  Sum_probs=59.7

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+.+.+...+.++.+|||||||+|.++..+++...   +|+|+|+++.+++.|++++.          ++.++.+|..
T Consensus        37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~  103 (263)
T 3pfg_A           37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNP----------DAVLHHGDMR  103 (263)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCT----------TSEEEECCTT
T ss_pred             HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCC----------CCEEEECChH
Confidence            3444444433456778999999999999999987743   89999999999999998743          4677888876


Q ss_pred             CC----CccEEEEEe
Q psy14969        664 QQ----DASRVNISV  674 (687)
Q Consensus       664 da----PFDLILVVf  674 (687)
                      ..    .||+|+...
T Consensus       104 ~~~~~~~fD~v~~~~  118 (263)
T 3pfg_A          104 DFSLGRRFSAVTCMF  118 (263)
T ss_dssp             TCCCSCCEEEEEECT
T ss_pred             HCCccCCcCEEEEcC
Confidence            53    488887654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.67  E-value=2.4e-08  Score=97.82  Aligned_cols=78  Identities=13%  Similarity=0.069  Sum_probs=63.7

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..|.+...+++.+  .+.++.+|||||||+|++|. +++ .+ .++|+|+|+++.|++.|++++...       .++.+
T Consensus         4 L~d~~i~~~iv~~~--~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~-------~~v~~   71 (252)
T 1qyr_A            4 LNDQFVIDSIVSAI--NPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG-------PKLTI   71 (252)
T ss_dssp             ECCHHHHHHHHHHH--CCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG-------GGEEE
T ss_pred             cCCHHHHHHHHHhc--CCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC-------CceEE
Confidence            45788999999988  68889999999999999999 754 32 234999999999999999876432       37899


Q ss_pred             EEcCCCCCCc
Q psy14969        658 MRTLPPQQDA  667 (687)
Q Consensus       658 I~GDAedaPF  667 (687)
                      +.||+...++
T Consensus        72 i~~D~~~~~~   81 (252)
T 1qyr_A           72 YQQDAMTFNF   81 (252)
T ss_dssp             ECSCGGGCCH
T ss_pred             EECchhhCCH
Confidence            9999887653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.67  E-value=8.6e-08  Score=96.38  Aligned_cols=73  Identities=21%  Similarity=0.272  Sum_probs=61.5

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----Ccc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFD  668 (687)
                      .+.++.+|||||||+|.++..+++..  ..+|+|+|+++ +++.|+++++..++    ..++.++.++....     .||
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D  133 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNKL----EDTITLIKGKIEEVHLPVEKVD  133 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTTTSCCSCSCEE
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcCC----CCcEEEEEeeHHHhcCCCCcEE
Confidence            45678999999999999999999873  35999999996 99999999999887    67899999997653     477


Q ss_pred             EEEEE
Q psy14969        669 RVNIS  673 (687)
Q Consensus       669 LILVV  673 (687)
                      +|+..
T Consensus       134 ~Ivs~  138 (340)
T 2fyt_A          134 VIISE  138 (340)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            77653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.67  E-value=1.2e-07  Score=85.12  Aligned_cols=78  Identities=17%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+++.+. .+.++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++    .+.     .++.++.+|..
T Consensus        34 ~~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~----~~~-----~~~~~~~~d~~  100 (218)
T 3ou2_A           34 APAALERLR-AGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGR----HGL-----DNVEFRQQDLF  100 (218)
T ss_dssp             HHHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGG----GCC-----TTEEEEECCTT
T ss_pred             HHHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHh----cCC-----CCeEEEecccc
Confidence            344455542 46678899999999999999999883   499999999999999988    332     47899999875


Q ss_pred             C----CCccEEEEEe
Q psy14969        664 Q----QDASRVNISV  674 (687)
Q Consensus       664 d----aPFDLILVVf  674 (687)
                      .    ..||+|+...
T Consensus       101 ~~~~~~~~D~v~~~~  115 (218)
T 3ou2_A          101 DWTPDRQWDAVFFAH  115 (218)
T ss_dssp             SCCCSSCEEEEEEES
T ss_pred             cCCCCCceeEEEEec
Confidence            4    4689888764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.66  E-value=4.6e-08  Score=88.78  Aligned_cols=79  Identities=6%  Similarity=0.090  Sum_probs=60.5

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+++.+. ...++.+|||||||+|.++..+++...   +|+|+|+++.+++.|++++..         ++.++.++.
T Consensus        29 ~~~~~~~~l~-~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~   95 (250)
T 2p7i_A           29 MHPFMVRAFT-PFFRPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKD---------GITYIHSRF   95 (250)
T ss_dssp             HHHHHHHHHG-GGCCSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCS---------CEEEEESCG
T ss_pred             HHHHHHHHHH-hhcCCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhC---------CeEEEEccH
Confidence            3455566553 234678999999999999999998753   799999999999999987432         577888775


Q ss_pred             C----CCCccEEEEEe
Q psy14969        663 P----QQDASRVNISV  674 (687)
Q Consensus       663 e----daPFDLILVVf  674 (687)
                      .    ...||+|+...
T Consensus        96 ~~~~~~~~fD~v~~~~  111 (250)
T 2p7i_A           96 EDAQLPRRYDNIVLTH  111 (250)
T ss_dssp             GGCCCSSCEEEEEEES
T ss_pred             HHcCcCCcccEEEEhh
Confidence            4    34589887753

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.66  E-value=1.1e-07  Score=86.13  Aligned_cols=81  Identities=22%  Similarity=0.118  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhhh-cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        581 PSFIASSLEPALL-KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       581 P~VvAlLLElLke-dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      +.+...++..+.. ...++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.|+++++          ++.++.
T Consensus        34 ~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~  101 (200)
T 1ne2_A           34 ASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG----------GVNFMV  101 (200)
T ss_dssp             HHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT----------TSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC----------CCEEEE
Confidence            4445555544421 3457889999999999999999987 3 3489999999999999999864          456777


Q ss_pred             cCCCCC--CccEEEEE
Q psy14969        660 TLPPQQ--DASRVNIS  673 (687)
Q Consensus       660 GDAeda--PFDLILVV  673 (687)
                      +|+...  .||+|+..
T Consensus       102 ~d~~~~~~~~D~v~~~  117 (200)
T 1ne2_A          102 ADVSEISGKYDTWIMN  117 (200)
T ss_dssp             CCGGGCCCCEEEEEEC
T ss_pred             CcHHHCCCCeeEEEEC
Confidence            776544  47877654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.66  E-value=1.1e-07  Score=95.46  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=64.5

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..+++.+  ...++.+|||||||+|.++..+++..  .++|+|+|+++ +++.|+++++..++    ..++.++.++...
T Consensus        40 ~~i~~~l--~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~l----~~~v~~~~~d~~~  110 (348)
T 2y1w_A           40 RAILQNH--TDFKDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKVEE  110 (348)
T ss_dssp             HHHHHTG--GGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-HHHHHHHHHHHTTC----TTTEEEEESCTTT
T ss_pred             HHHHhcc--ccCCcCEEEEcCCCccHHHHHHHhCC--CCEEEEECCHH-HHHHHHHHHHHcCC----CCcEEEEEcchhh
Confidence            3444444  45688999999999999999998862  45999999996 88999999999887    6789999999775


Q ss_pred             C----CccEEEEE
Q psy14969        665 Q----DASRVNIS  673 (687)
Q Consensus       665 a----PFDLILVV  673 (687)
                      .    .||+|+..
T Consensus       111 ~~~~~~~D~Ivs~  123 (348)
T 2y1w_A          111 VSLPEQVDIIISE  123 (348)
T ss_dssp             CCCSSCEEEEEEC
T ss_pred             CCCCCceeEEEEe
Confidence            3    47877654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.66  E-value=3.8e-08  Score=93.23  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=63.0

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .+.+...+++.+  .+.++.+|||||||+|..+..+++.   .++|+|+|+++.+++.|+++.           ++.++.
T Consensus        19 ~~~~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~   82 (261)
T 3ege_A           19 DIRIVNAIINLL--NLPKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSIVMRQQAVVHP-----------QVEWFT   82 (261)
T ss_dssp             CHHHHHHHHHHH--CCCTTCEEEEETCTTSHHHHHHHTT---TCEEEEECSCHHHHHSSCCCT-----------TEEEEC
T ss_pred             cHHHHHHHHHHh--CCCCCCEEEEEcCcccHHHHHHHhC---CCEEEEEeCCHHHHHHHHhcc-----------CCEEEE
Confidence            456777777777  5678899999999999999999873   469999999999998776542           678888


Q ss_pred             cCCCC-----CCccEEEEEe
Q psy14969        660 TLPPQ-----QDASRVNISV  674 (687)
Q Consensus       660 GDAed-----aPFDLILVVf  674 (687)
                      +|...     ..||+|+...
T Consensus        83 ~d~~~~~~~~~~fD~v~~~~  102 (261)
T 3ege_A           83 GYAENLALPDKSVDGVISIL  102 (261)
T ss_dssp             CCTTSCCSCTTCBSEEEEES
T ss_pred             CchhhCCCCCCCEeEEEEcc
Confidence            88654     3589887764

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.65  E-value=6.8e-08  Score=89.45  Aligned_cols=77  Identities=14%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..+++.+  .+.++.+|||||||+|.++..+++.. |.++|+|+|+++.+++.|+++.          .++.++.+|...
T Consensus        23 ~~l~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~   89 (259)
T 2p35_A           23 RDLLAQV--PLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLAT   89 (259)
T ss_dssp             HHHHTTC--CCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTT
T ss_pred             HHHHHhc--CCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhh
Confidence            3444444  45678899999999999999999987 4679999999999999999871          256778887654


Q ss_pred             ----CCccEEEEEe
Q psy14969        665 ----QDASRVNISV  674 (687)
Q Consensus       665 ----aPFDLILVVf  674 (687)
                          ..||+|+...
T Consensus        90 ~~~~~~fD~v~~~~  103 (259)
T 2p35_A           90 WKPAQKADLLYANA  103 (259)
T ss_dssp             CCCSSCEEEEEEES
T ss_pred             cCccCCcCEEEEeC
Confidence                3489887654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.65  E-value=1.1e-07  Score=101.95  Aligned_cols=87  Identities=14%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH-------HcCCCccCC
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR-------KNHAHLLDE  652 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK-------kaG~~VaSs  652 (687)
                      .|.+...+++.+  .+.++.+|||||||+|.++..+|...+ ..+|+|||+++.+++.|+++++       ..++   ..
T Consensus       158 ~~~~i~~il~~l--~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl---~~  231 (438)
T 3uwp_A          158 SFDLVAQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGK---KH  231 (438)
T ss_dssp             HHHHHHHHHHHH--CCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB---CC
T ss_pred             CHHHHHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC---CC
Confidence            466777888877  789999999999999999999998764 4579999999999999998754       3343   12


Q ss_pred             CcEEEEEcCCCCCC-------ccEEEE
Q psy14969        653 GVVNIMRTLPPQQD-------ASRVNI  672 (687)
Q Consensus       653 gRI~LI~GDAedaP-------FDLILV  672 (687)
                      .++.|++||....+       +|+|++
T Consensus       232 ~rVefi~GD~~~lp~~d~~~~aDVVf~  258 (438)
T 3uwp_A          232 AEYTLERGDFLSEEWRERIANTSVIFV  258 (438)
T ss_dssp             CEEEEEECCTTSHHHHHHHHTCSEEEE
T ss_pred             CCeEEEECcccCCccccccCCccEEEE
Confidence            68999999987654       577665

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.65  E-value=1e-07  Score=88.24  Aligned_cols=70  Identities=11%  Similarity=0.158  Sum_probs=58.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--------
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ--------  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda--------  665 (687)
                      .+.++.+|||||||+|.++..+++...   +|+|+|+++.+++.|++++.        ..++.++.+|....        
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~~~  121 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT--------AANISYRLLDGLVPEQAAQIHS  121 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC--------CTTEEEEECCTTCHHHHHHHHH
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc--------ccCceEEECccccccccccccc
Confidence            567889999999999999999999874   79999999999999998761        23789999998762        


Q ss_pred             --CccEEEEEe
Q psy14969        666 --DASRVNISV  674 (687)
Q Consensus       666 --PFDLILVVf  674 (687)
                        +||+|+...
T Consensus       122 ~~~~d~v~~~~  132 (245)
T 3ggd_A          122 EIGDANIYMRT  132 (245)
T ss_dssp             HHCSCEEEEES
T ss_pred             ccCccEEEEcc
Confidence              378877654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.64  E-value=1.4e-07  Score=100.42  Aligned_cols=76  Identities=12%  Similarity=0.104  Sum_probs=66.1

Q ss_pred             cCC--CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------C
Q psy14969        594 KLK--PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------Q  665 (687)
Q Consensus       594 dLk--pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------a  665 (687)
                      .+.  +|.+|||+|||+|+.|..||+.+++.+.|+|+|+++.+++.|++|+++.++     .++.++.+|+..      .
T Consensus       112 ~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-----~nv~~~~~D~~~~~~~~~~  186 (479)
T 2frx_A          112 FADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-----SNVALTHFDGRVFGAAVPE  186 (479)
T ss_dssp             TTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCCSTTHHHHSTT
T ss_pred             CcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCCHHHhhhhccc
Confidence            455  899999999999999999999986568999999999999999999999987     468999999764      3


Q ss_pred             CccEEEEEe
Q psy14969        666 DASRVNISV  674 (687)
Q Consensus       666 PFDLILVVf  674 (687)
                      .||.|++..
T Consensus       187 ~fD~Il~D~  195 (479)
T 2frx_A          187 MFDAILLDA  195 (479)
T ss_dssp             CEEEEEEEC
T ss_pred             cCCEEEECC
Confidence            589887754

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.64  E-value=6.9e-08  Score=97.23  Aligned_cols=71  Identities=20%  Similarity=0.308  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      +.++.+|||||||+|.++..+++. + ..+|+|+|++ ++++.|+++++..++    .+++.++.++...     ..||+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~  136 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKL----DHVVTIIKGKVEEVELPVEKVDI  136 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTC----TTTEEEEESCTTTCCCSSSCEEE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCC----CCcEEEEECcHHHccCCCCceEE
Confidence            457899999999999999999988 2 4699999999 599999999999988    6679999999765     35787


Q ss_pred             EEE
Q psy14969        670 VNI  672 (687)
Q Consensus       670 ILV  672 (687)
                      |+.
T Consensus       137 Iis  139 (349)
T 3q7e_A          137 IIS  139 (349)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.64  E-value=5.3e-08  Score=104.36  Aligned_cols=71  Identities=14%  Similarity=0.078  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------CCc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------QDA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------aPF  667 (687)
                      +..+.+|||||||+|.++..||++..   .|+|||.++.+++.|+....+.+.     -++++.++++++       ..|
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~f  135 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPD-----FAAEFRVGRIEEVIAALEEGEF  135 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTT-----SEEEEEECCHHHHHHHCCTTSC
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCC-----CceEEEECCHHHHhhhccCCCc
Confidence            45678999999999999999999854   999999999999999999988763     278999988643       469


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |+|+..
T Consensus       136 D~v~~~  141 (569)
T 4azs_A          136 DLAIGL  141 (569)
T ss_dssp             SEEEEE
T ss_pred             cEEEEC
Confidence            988753

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.64  E-value=7.7e-08  Score=97.96  Aligned_cols=72  Identities=24%  Similarity=0.331  Sum_probs=62.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDL  669 (687)
                      .+.++.+|||||||+|.++..+++..  ..+|+|+|++ .|++.|+++++..++    .+++.++.++....    .||+
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~D~  132 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANNL----DHIVEVIEGSVEDISLPEKVDV  132 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTTC----TTTEEEEESCGGGCCCSSCEEE
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcCC----CCeEEEEECchhhcCcCCcceE
Confidence            45688999999999999999999873  2499999999 999999999999988    67799999997653    4888


Q ss_pred             EEE
Q psy14969        670 VNI  672 (687)
Q Consensus       670 ILV  672 (687)
                      |+.
T Consensus       133 Iv~  135 (376)
T 3r0q_C          133 IIS  135 (376)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.63  E-value=1.2e-07  Score=84.80  Aligned_cols=71  Identities=17%  Similarity=0.029  Sum_probs=57.1

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----Ccc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFD  668 (687)
                      .+.++.+|||||||+|.++..+++.. +. +|+|+|+++.+++.|++++..       ..++.++.+|....     .||
T Consensus        39 ~~~~~~~vLdiGcG~G~~~~~l~~~~-~~-~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~~~~~~~~fD  109 (215)
T 2pxx_A           39 ELRPEDRILVLGCGNSALSYELFLGG-FP-NVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLDFPSASFD  109 (215)
T ss_dssp             GCCTTCCEEEETCTTCSHHHHHHHTT-CC-CEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTSCCSCSSCEE
T ss_pred             hcCCCCeEEEECCCCcHHHHHHHHcC-CC-cEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhcCCCCCCccc
Confidence            45788999999999999999999874 22 899999999999999998754       13678888887543     478


Q ss_pred             EEEEE
Q psy14969        669 RVNIS  673 (687)
Q Consensus       669 LILVV  673 (687)
                      +|+..
T Consensus       110 ~v~~~  114 (215)
T 2pxx_A          110 VVLEK  114 (215)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            77653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.63  E-value=1e-07  Score=97.85  Aligned_cols=85  Identities=18%  Similarity=0.119  Sum_probs=66.7

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+++.+  ...++.+|||+|||+|.++..+++.. |..+|+|+|+++.+++.|+++++.+++.  ...++.++.+|..
T Consensus       211 ~~~ll~~l--~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~--~~~~v~~~~~D~~  285 (375)
T 4dcm_A          211 ARFFMQHL--PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNAL  285 (375)
T ss_dssp             HHHHHHTC--CCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGG--GGGGEEEEECSTT
T ss_pred             HHHHHHhC--cccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCC--cCceEEEEechhh
Confidence            34555555  44566899999999999999999986 5679999999999999999999998861  1125788888865


Q ss_pred             C----CCccEEEEE
Q psy14969        664 Q----QDASRVNIS  673 (687)
Q Consensus       664 d----aPFDLILVV  673 (687)
                      .    ..||+|+..
T Consensus       286 ~~~~~~~fD~Ii~n  299 (375)
T 4dcm_A          286 SGVEPFRFNAVLCN  299 (375)
T ss_dssp             TTCCTTCEEEEEEC
T ss_pred             ccCCCCCeeEEEEC
Confidence            3    458877654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.63  E-value=6.9e-08  Score=87.58  Aligned_cols=75  Identities=19%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-  664 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-  664 (687)
                      .+++.+  ...++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++.         .++.++.++... 
T Consensus        36 ~~l~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~~  101 (220)
T 3hnr_A           36 DILEDV--VNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLSF  101 (220)
T ss_dssp             HHHHHH--HHTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSSC
T ss_pred             HHHHHh--hccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhhc
Confidence            334444  34578899999999999999999873   499999999999999998865         245667777554 


Q ss_pred             ---CCccEEEEEe
Q psy14969        665 ---QDASRVNISV  674 (687)
Q Consensus       665 ---aPFDLILVVf  674 (687)
                         ..||+|+...
T Consensus       102 ~~~~~fD~v~~~~  114 (220)
T 3hnr_A          102 EVPTSIDTIVSTY  114 (220)
T ss_dssp             CCCSCCSEEEEES
T ss_pred             CCCCCeEEEEECc
Confidence               4589887763

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.62  E-value=1.2e-07  Score=85.15  Aligned_cols=72  Identities=19%  Similarity=0.145  Sum_probs=55.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----Ccc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFD  668 (687)
                      ...++.+|||||||+|..+..++...  ..+|+|+|+++.+++.|++++...+.      ++.++.++....     .||
T Consensus        20 ~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~fD   91 (209)
T 2p8j_A           20 ESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENNF------KLNISKGDIRKLPFKDESMS   91 (209)
T ss_dssp             HSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHTC------CCCEEECCTTSCCSCTTCEE
T ss_pred             ccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcCC------ceEEEECchhhCCCCCCcee
Confidence            45678899999999999854444332  35999999999999999999987654      567788886543     478


Q ss_pred             EEEEE
Q psy14969        669 RVNIS  673 (687)
Q Consensus       669 LILVV  673 (687)
                      +|+..
T Consensus        92 ~v~~~   96 (209)
T 2p8j_A           92 FVYSY   96 (209)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            87754

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.62  E-value=8.7e-08  Score=91.04  Aligned_cols=86  Identities=16%  Similarity=0.047  Sum_probs=63.8

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .....+...+  ...++.+|||||||+|..+..+++...   +|+|+|+++.|++.|+++....+.. ....++.+..++
T Consensus        44 ~~~~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~d  117 (293)
T 3thr_A           44 EYKAWLLGLL--RQHGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEAN  117 (293)
T ss_dssp             HHHHHHHHHH--HHTTCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECC
T ss_pred             HHHHHHHHHh--cccCCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccc-cccceeeEeecC
Confidence            3455555555  345788999999999999999998743   9999999999999999987654431 011356777777


Q ss_pred             C--------CCCCccEEEEE
Q psy14969        662 P--------PQQDASRVNIS  673 (687)
Q Consensus       662 A--------edaPFDLILVV  673 (687)
                      .        ....||+|++.
T Consensus       118 ~~~~~~~~~~~~~fD~V~~~  137 (293)
T 3thr_A          118 WLTLDKDVPAGDGFDAVICL  137 (293)
T ss_dssp             GGGHHHHSCCTTCEEEEEEC
T ss_pred             hhhCccccccCCCeEEEEEc
Confidence            4        34569988774

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.62  E-value=1e-07  Score=87.45  Aligned_cols=69  Identities=22%  Similarity=0.210  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      +.++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|+++.   .     ..++.++.++...     ..||+
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~---~-----~~~~~~~~~d~~~~~~~~~~fD~  119 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERG---E-----GPDLSFIKGDLSSLPFENEQFEA  119 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTT---C-----BTTEEEEECBTTBCSSCTTCEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhc---c-----cCCceEEEcchhcCCCCCCCccE
Confidence            5688999999999999999999873   48999999999999998874   1     3478888888654     34888


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus       120 v~~~~  124 (242)
T 3l8d_A          120 IMAIN  124 (242)
T ss_dssp             EEEES
T ss_pred             EEEcC
Confidence            87653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.62  E-value=1.3e-07  Score=94.19  Aligned_cols=72  Identities=19%  Similarity=0.226  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----CccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFDL  669 (687)
                      +.++.+|||||||+|.++..+++..  ..+|+|+|++ .+++.|+++++..++    .+++.++.++....     .||+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~~vD~s-~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~  108 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMS-SIIEMAKELVELNGF----SDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESS-THHHHHHHHHHHTTC----TTTEEEEESCTTTSCCSSSCEEE
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCC--CCEEEEEChH-HHHHHHHHHHHHcCC----CCCEEEEECchhhccCCCCcccE
Confidence            4578899999999999999998872  3599999999 699999999999887    67899999997653     4777


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       109 Ivs~  112 (328)
T 1g6q_1          109 IISE  112 (328)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.61  E-value=1.3e-07  Score=90.06  Aligned_cols=74  Identities=16%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ  665 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda  665 (687)
                      .+++.+  .+.++.+|||||||+|.++..+++   +.++|+|+|+++.|++.|++++          .++.++.+++...
T Consensus        48 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~  112 (279)
T 3ccf_A           48 DLLQLL--NPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY----------PHLHFDVADARNF  112 (279)
T ss_dssp             HHHHHH--CCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTTC
T ss_pred             HHHHHh--CCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhhC
Confidence            344555  567889999999999999999998   3469999999999999999875          1355667776543


Q ss_pred             ----CccEEEEEe
Q psy14969        666 ----DASRVNISV  674 (687)
Q Consensus       666 ----PFDLILVVf  674 (687)
                          .||+|+...
T Consensus       113 ~~~~~fD~v~~~~  125 (279)
T 3ccf_A          113 RVDKPLDAVFSNA  125 (279)
T ss_dssp             CCSSCEEEEEEES
T ss_pred             CcCCCcCEEEEcc
Confidence                478887654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.61  E-value=6.2e-08  Score=103.44  Aligned_cols=77  Identities=22%  Similarity=0.242  Sum_probs=66.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPF  667 (687)
                      .+.+|.+|||+|||+|..|..+|++++..++|+|+|+++.+++.|++|+++.++     . +.++.+|+.      ...|
T Consensus        98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~-----~-v~~~~~Da~~l~~~~~~~F  171 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA-----P-LAVTQAPPRALAEAFGTYF  171 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC-----C-CEEECSCHHHHHHHHCSCE
T ss_pred             CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----e-EEEEECCHHHhhhhccccC
Confidence            678999999999999999999999986568999999999999999999999997     3 888888853      3469


Q ss_pred             cEEEEEecCC
Q psy14969        668 SRVNISVEPQ  677 (687)
Q Consensus       668 DLILVVfAP~  677 (687)
                      |+|++.. |+
T Consensus       172 D~Il~D~-Pc  180 (464)
T 3m6w_A          172 HRVLLDA-PC  180 (464)
T ss_dssp             EEEEEEC-CC
T ss_pred             CEEEECC-Cc
Confidence            9887654 54

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.61  E-value=9.4e-08  Score=99.55  Aligned_cols=69  Identities=23%  Similarity=0.318  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccEEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASRVN  671 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDLIL  671 (687)
                      .+|++|||||||||.++..+|++.+  .+|+|||.++ +++.|+++++.+++    .++|.++.++.++.    .+|+|+
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~-~~~~a~~~~~~n~~----~~~i~~i~~~~~~~~lpe~~Dviv  154 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASA-IWQQAREVVRFNGL----EDRVHVLPGPVETVELPEQVDAIV  154 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-THHHHHHHHHHTTC----TTTEEEEESCTTTCCCSSCEEEEE
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChH-HHHHHHHHHHHcCC----CceEEEEeeeeeeecCCccccEEE
Confidence            3789999999999999988887753  4899999996 88999999999998    78999999998754    366554

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.60  E-value=9.7e-08  Score=93.39  Aligned_cols=74  Identities=15%  Similarity=-0.025  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC--CCCCCccEEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL--PPQQDASRVNI  672 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD--AedaPFDLILV  672 (687)
                      +.++++|||+|||+|-++..++... |+.+|+|+|+++.|++.|++++...|.    .+++.+..-.  ....+||+|+.
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~----~~~v~~~d~~~~~~~~~~DvVLa  121 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKT----TIKYRFLNKESDVYKGTYDVVFL  121 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCC----SSEEEEECCHHHHTTSEEEEEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC----CccEEEecccccCCCCCcChhhH
Confidence            4678899999999999999998876 578999999999999999999999987    4466662211  23566898865


Q ss_pred             E
Q psy14969        673 S  673 (687)
Q Consensus       673 V  673 (687)
                      .
T Consensus       122 ~  122 (200)
T 3fzg_A          122 L  122 (200)
T ss_dssp             E
T ss_pred             h
Confidence            3

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.60  E-value=2.6e-07  Score=96.42  Aligned_cols=78  Identities=22%  Similarity=0.364  Sum_probs=66.1

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-------C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-------D  666 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-------P  666 (687)
                      .+.+|.+|||+|||+|..|..+++.++..++|+|+|+++.+++.++++++..++     .++.++.+|+...       .
T Consensus       256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-----~~v~~~~~D~~~~~~~~~~~~  330 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-----KIVKPLVKDARKAPEIIGEEV  330 (450)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCTTCCSSSSCSSC
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEEEcChhhcchhhccCC
Confidence            678899999999999999999999885448999999999999999999999886     4688898887543       4


Q ss_pred             ccEEEEEecCC
Q psy14969        667 ASRVNISVEPQ  677 (687)
Q Consensus       667 FDLILVVfAP~  677 (687)
                      ||.|++.. |+
T Consensus       331 fD~Vl~D~-Pc  340 (450)
T 2yxl_A          331 ADKVLLDA-PC  340 (450)
T ss_dssp             EEEEEEEC-CC
T ss_pred             CCEEEEcC-CC
Confidence            88887653 44

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.59  E-value=3.2e-07  Score=91.21  Aligned_cols=82  Identities=22%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+++.+  .+.++.+|||||||+|.++..+++.. |..+|+++|+ +.+++.|+++++..++    .+++.++.+|..
T Consensus       179 ~~~l~~~~--~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~  250 (359)
T 1x19_A          179 IQLLLEEA--KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIY  250 (359)
T ss_dssp             HHHHHHHC--CCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTC----TTTEEEEECCTT
T ss_pred             HHHHHHhc--CCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCC----CCCEEEEeCccc
Confidence            34445544  46778899999999999999999987 5789999999 9999999999999876    567999999976


Q ss_pred             CCC---ccEEEEE
Q psy14969        664 QQD---ASRVNIS  673 (687)
Q Consensus       664 daP---FDLILVV  673 (687)
                      ..+   +|+|+..
T Consensus       251 ~~~~~~~D~v~~~  263 (359)
T 1x19_A          251 KESYPEADAVLFC  263 (359)
T ss_dssp             TSCCCCCSEEEEE
T ss_pred             cCCCCCCCEEEEe
Confidence            533   4777664

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.59  E-value=2.7e-07  Score=93.50  Aligned_cols=72  Identities=14%  Similarity=0.052  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-C------Cc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-Q------DA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-a------PF  667 (687)
                      ..++.+||||| |+|.++..+++.. +.++|+|+|+++.+++.|+++++..++    . ++.++.+|+.. .      .|
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~g~----~-~v~~~~~D~~~~l~~~~~~~f  242 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEIGY----E-DIEIFTFDLRKPLPDYALHKF  242 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHHTC----C-CEEEECCCTTSCCCTTTSSCB
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----C-CEEEEEChhhhhchhhccCCc
Confidence            34688999999 9999999998874 457999999999999999999999886    3 79999999765 3      48


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |+|++.
T Consensus       243 D~Vi~~  248 (373)
T 2qm3_A          243 DTFITD  248 (373)
T ss_dssp             SEEEEC
T ss_pred             cEEEEC
Confidence            988764

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.58  E-value=2.5e-07  Score=84.41  Aligned_cols=75  Identities=12%  Similarity=0.085  Sum_probs=57.4

Q ss_pred             HHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-
Q psy14969        587 SLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-  665 (687)
Q Consensus       587 LLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-  665 (687)
                      +.+.+.....++.+|||||||+|.++..+++...   +|+|+|+++.+++.|++++          .++.++.++.... 
T Consensus        30 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~   96 (239)
T 3bxo_A           30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL----------PDATLHQGDMRDFR   96 (239)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC----------TTCEEEECCTTTCC
T ss_pred             HHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC----------CCCEEEECCHHHcc
Confidence            3333332346788999999999999999998874   8999999999999999874          2467777776543 


Q ss_pred             ---CccEEEEEe
Q psy14969        666 ---DASRVNISV  674 (687)
Q Consensus       666 ---PFDLILVVf  674 (687)
                         .||+|+..+
T Consensus        97 ~~~~~D~v~~~~  108 (239)
T 3bxo_A           97 LGRKFSAVVSMF  108 (239)
T ss_dssp             CSSCEEEEEECT
T ss_pred             cCCCCcEEEEcC
Confidence               478887443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.58  E-value=2.9e-07  Score=89.43  Aligned_cols=90  Identities=17%  Similarity=0.048  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCc--cCCCcEEEEEc
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL--LDEGVVNIMRT  660 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~V--aSsgRI~LI~G  660 (687)
                      +...+++.+...+.++.+|||||||+|..+..+++.  +..+|+|+|+++.+++.|++++...+...  ....++.++.+
T Consensus        20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   97 (313)
T 3bgv_A           20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA   97 (313)
T ss_dssp             HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred             HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence            334444444323457889999999999999999874  34699999999999999999987652100  00247889999


Q ss_pred             CCCCC-----------CccEEEEEe
Q psy14969        661 LPPQQ-----------DASRVNISV  674 (687)
Q Consensus       661 DAeda-----------PFDLILVVf  674 (687)
                      |....           .||+|+...
T Consensus        98 D~~~~~~~~~~~~~~~~fD~V~~~~  122 (313)
T 3bgv_A           98 DSSKELLIDKFRDPQMCFDICSCQF  122 (313)
T ss_dssp             CTTTSCSTTTCSSTTCCEEEEEEET
T ss_pred             cccccchhhhcccCCCCEEEEEEec
Confidence            87543           588887754

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.58  E-value=1.4e-07  Score=87.03  Aligned_cols=72  Identities=14%  Similarity=0.078  Sum_probs=58.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFD  668 (687)
                      ...++.+|||||||+|.++..+++...  .+|+|+|+++.+++.|++++...       .++.++.++...     ..||
T Consensus        90 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD  160 (254)
T 1xtp_A           90 PGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             TTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGGCCCCSSCEE
T ss_pred             cccCCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC-------CceEEEEccHHHCCCCCCCeE
Confidence            345788999999999999999988752  48999999999999999986553       368888888643     3588


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|+...
T Consensus       161 ~v~~~~  166 (254)
T 1xtp_A          161 LIVIQW  166 (254)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            887653

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.57  E-value=1.3e-07  Score=93.97  Aligned_cols=77  Identities=10%  Similarity=-0.009  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccC-CCcEEEEEcCC-------------
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD-EGVVNIMRTLP-------------  662 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaS-sgRI~LI~GDA-------------  662 (687)
                      ++.+|||||||+|..+..+++..  .++|+|+|+|+.|++.|++++...+..... .-++.+..++.             
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            57899999999998766655542  358999999999999999998876531000 00255666554             


Q ss_pred             CCCCccEEEEEec
Q psy14969        663 PQQDASRVNISVE  675 (687)
Q Consensus       663 edaPFDLILVVfA  675 (687)
                      +...||+|+..++
T Consensus       126 ~~~~FD~V~~~~~  138 (302)
T 2vdw_A          126 YFGKFNIIDWQFA  138 (302)
T ss_dssp             CSSCEEEEEEESC
T ss_pred             cCCCeeEEEECch
Confidence            2357999987654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.57  E-value=3.1e-07  Score=90.87  Aligned_cols=74  Identities=19%  Similarity=0.133  Sum_probs=63.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-CC--ccEE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-QD--ASRV  670 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-aP--FDLI  670 (687)
                      .+.++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++++...++    ..++.++.+|... .|  ||+|
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~D~v  252 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFKPLPVTADVV  252 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCSCCEEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCCcCCCCCCEE
Confidence            45678899999999999999999987 5789999999 9999999999999887    5689999999643 32  7877


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      ++.
T Consensus       253 ~~~  255 (374)
T 1qzz_A          253 LLS  255 (374)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            664

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.56  E-value=5.5e-08  Score=91.59  Aligned_cols=49  Identities=24%  Similarity=0.262  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKN  645 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKka  645 (687)
                      ++.+|||+|||||.++..+++.+ .+..+|+|+|+++.+++.|++++...
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            56799999999999999999872 13568999999999999999998766

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.56  E-value=1.9e-07  Score=90.89  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=53.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeC-CHHHHHHHHHHH-----HHcCCCccCCCcEEEEEcC---C---
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDH-MEYLVNFSKENI-----RKNHAHLLDEGVVNIMRTL---P---  662 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDI-SpeAVE~ARKNL-----KkaG~~VaSsgRI~LI~GD---A---  662 (687)
                      ..++.+|||||||+|+++..+++..  .++|+|+|+ ++.+++.|++++     +..++......++.+...+   .   
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~--~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~  154 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAG--ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS  154 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTT--CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcC--CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence            3578899999999999999998763  358999999 899999999999     4444310011367776333   2   


Q ss_pred             -----CCCCccEEEEE
Q psy14969        663 -----PQQDASRVNIS  673 (687)
Q Consensus       663 -----edaPFDLILVV  673 (687)
                           ....||+|+..
T Consensus       155 ~~~~~~~~~fD~Ii~~  170 (281)
T 3bzb_A          155 LQRCTGLQRFQVVLLA  170 (281)
T ss_dssp             HHHHHSCSSBSEEEEE
T ss_pred             HHhhccCCCCCEEEEe
Confidence                 23569988663

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.56  E-value=7.6e-08  Score=94.01  Aligned_cols=74  Identities=16%  Similarity=0.108  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .+...+.+.    ...+.+|||||||||..+..|++...   +|+|+|+++.|++.|++           ..++.++.++
T Consensus        28 ~l~~~l~~~----~~~~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~   89 (257)
T 4hg2_A           28 ALFRWLGEV----APARGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALR-----------HPRVTYAVAP   89 (257)
T ss_dssp             HHHHHHHHH----SSCSSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCC-----------CTTEEEEECC
T ss_pred             HHHHHHHHh----cCCCCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhh-----------cCCceeehhh
Confidence            455554443    34567999999999999999998764   89999999999987753           2368899998


Q ss_pred             CCCCC-----ccEEEEE
Q psy14969        662 PPQQD-----ASRVNIS  673 (687)
Q Consensus       662 AedaP-----FDLILVV  673 (687)
                      ++..|     ||+|++.
T Consensus        90 ~e~~~~~~~sfD~v~~~  106 (257)
T 4hg2_A           90 AEDTGLPPASVDVAIAA  106 (257)
T ss_dssp             TTCCCCCSSCEEEEEEC
T ss_pred             hhhhcccCCcccEEEEe
Confidence            77544     7887764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.56  E-value=1e-07  Score=101.47  Aligned_cols=76  Identities=18%  Similarity=0.247  Sum_probs=66.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPF  667 (687)
                      .+.+|.+|||+|||+|..|..+|++++..++|+|+|+++.+++.+++|+++.++     .++.++.+|+.      ...|
T Consensus       102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~-----~nv~v~~~Da~~l~~~~~~~F  176 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV-----SNAIVTNHAPAELVPHFSGFF  176 (456)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-----SSEEEECCCHHHHHHHHTTCE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEeCCHHHhhhhccccC
Confidence            678999999999999999999999886568999999999999999999999997     36888888864      2469


Q ss_pred             cEEEEEe
Q psy14969        668 SRVNISV  674 (687)
Q Consensus       668 DLILVVf  674 (687)
                      |+|++..
T Consensus       177 D~Il~Da  183 (456)
T 3m4x_A          177 DRIVVDA  183 (456)
T ss_dssp             EEEEEEC
T ss_pred             CEEEECC
Confidence            9887764

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.56  E-value=8.8e-08  Score=89.02  Aligned_cols=71  Identities=18%  Similarity=0.090  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----CccEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DASRVN  671 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFDLIL  671 (687)
                      ++.+|||||||+|.++..+++..  ..+|+|+|+++.+++.|++++...+.     .++.++.++....     .||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK-----RVRNYFCCGLQDFTPEPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG-----GEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCC-----ceEEEEEcChhhcCCCCCCEEEEE
Confidence            58899999999999999988775  35899999999999999999877642     3678888886432     589887


Q ss_pred             EEe
Q psy14969        672 ISV  674 (687)
Q Consensus       672 VVf  674 (687)
                      ...
T Consensus       152 ~~~  154 (241)
T 2ex4_A          152 IQW  154 (241)
T ss_dssp             EES
T ss_pred             Ecc
Confidence            764

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.55  E-value=1.5e-07  Score=87.63  Aligned_cols=70  Identities=23%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      ..++.+|||||||+|.++..+++...  .+|+|+|+++.+++.|++++.        ..++.++.++...     ..||+
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT--------SPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC--------CTTEEEEECCGGGCCCCTTCEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc--------cCCeEEEEcchhhCCCCCCCeEE
Confidence            34788999999999999999998842  389999999999999998865        2468888888643     45888


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus       112 v~~~~  116 (253)
T 3g5l_A          112 VLSSL  116 (253)
T ss_dssp             EEEES
T ss_pred             EEEch
Confidence            87764

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.55  E-value=1.3e-07  Score=99.99  Aligned_cols=76  Identities=16%  Similarity=0.199  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCccCCCcEEEEEcCCCCC-------
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN--HAHLLDEGVVNIMRTLPPQQ-------  665 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka--G~~VaSsgRI~LI~GDAeda-------  665 (687)
                      +.+|.+|||+|||+|+.+..||+..   ++|+|+|+++.|++.|++|++.+  ++     .++.++.+|+...       
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl-----~~i~~i~~Da~~~L~~~~~~  162 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEG-----KDVNILTGDFKEYLPLIKTF  162 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTT-----CEEEEEESCGGGSHHHHHHH
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCC-----CcEEEEECcHHHhhhhccCC
Confidence            4458999999999999999999875   39999999999999999999988  65     5799999998752       


Q ss_pred             CccEEEEEecCCCcC
Q psy14969        666 DASRVNISVEPQKSG  680 (687)
Q Consensus       666 PFDLILVVfAP~K~g  680 (687)
                      +||+|++  +|+..+
T Consensus       163 ~fDvV~l--DPPrr~  175 (410)
T 3ll7_A          163 HPDYIYV--DPARRS  175 (410)
T ss_dssp             CCSEEEE--CCEEC-
T ss_pred             CceEEEE--CCCCcC
Confidence            7897764  455443

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.55  E-value=2.6e-07  Score=98.18  Aligned_cols=72  Identities=15%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDL  669 (687)
                      ...++.+|||||||+|.++..+++.  +..+|+|+|+++ +++.|+++++.+++    ..++.++.++..+.    .||+
T Consensus       155 ~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl----~~~v~~~~~d~~~~~~~~~fD~  227 (480)
T 3b3j_A          155 TDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKVEEVSLPEQVDI  227 (480)
T ss_dssp             GGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTC----TTTEEEEESCTTTCCCSSCEEE
T ss_pred             hhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCC----CCcEEEEECchhhCccCCCeEE
Confidence            3457889999999999999999875  346999999998 99999999999987    67899999997763    4787


Q ss_pred             EEE
Q psy14969        670 VNI  672 (687)
Q Consensus       670 ILV  672 (687)
                      |+.
T Consensus       228 Ivs  230 (480)
T 3b3j_A          228 IIS  230 (480)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            765

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.55  E-value=1.5e-07  Score=85.34  Aligned_cols=66  Identities=20%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC----CCCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP----PQQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA----edaPFDL  669 (687)
                      .+.++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++   ++        .++.++.    ....||+
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~---~~--------~~~~~d~~~~~~~~~fD~  105 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRL---GR--------PVRTMLFHQLDAIDAYDA  105 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH---TS--------CCEECCGGGCCCCSCEEE
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhc---CC--------ceEEeeeccCCCCCcEEE
Confidence            46678999999999999999999873   48999999999999999987   22        1223332    3456898


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       106 v~~~  109 (211)
T 3e23_A          106 VWAH  109 (211)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.54  E-value=8e-09  Score=98.19  Aligned_cols=78  Identities=26%  Similarity=0.319  Sum_probs=64.6

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..+.+...+++.+  .+.++.+|||||||+|.++..+++..   ++|+|+|+++.+++.|++++.  .     ..++.+
T Consensus        12 l~~~~~~~~i~~~~--~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~-----~~~v~~   79 (245)
T 1yub_A           12 LTSEKVLNQIIKQL--NLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--L-----NTRVTL   79 (245)
T ss_dssp             CCCTTTHHHHHHHC--CCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--T-----CSEEEE
T ss_pred             CCCHHHHHHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--c-----CCceEE
Confidence            44556778888877  67788999999999999999999885   489999999999999888765  1     357899


Q ss_pred             EEcCCCCCCc
Q psy14969        658 MRTLPPQQDA  667 (687)
Q Consensus       658 I~GDAedaPF  667 (687)
                      +.+|+...++
T Consensus        80 ~~~D~~~~~~   89 (245)
T 1yub_A           80 IHQDILQFQF   89 (245)
T ss_dssp             CCSCCTTTTC
T ss_pred             EECChhhcCc
Confidence            9999887654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.54  E-value=4.5e-07  Score=87.97  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             HHHHHHhhhcC--CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        585 ASSLEPALLKL--KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       585 AlLLElLkedL--kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ..+++.+  ..  .++.+|||||||+|.++..+++.. |..+++++|++ .+++.|++++...++    ..++.++.+|.
T Consensus       153 ~~~~~~~--~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~----~~~v~~~~~d~  224 (335)
T 2r3s_A          153 QLIAQLV--NENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGV----ASRYHTIAGSA  224 (335)
T ss_dssp             HHHHHHH--TC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTC----GGGEEEEESCT
T ss_pred             HHHHHhc--ccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCC----CcceEEEeccc
Confidence            3445444  44  678899999999999999999987 57799999999 999999999998886    56799999987


Q ss_pred             CCC----CccEEEEE
Q psy14969        663 PQQ----DASRVNIS  673 (687)
Q Consensus       663 eda----PFDLILVV  673 (687)
                      ...    .||+|++.
T Consensus       225 ~~~~~~~~~D~v~~~  239 (335)
T 2r3s_A          225 FEVDYGNDYDLVLLP  239 (335)
T ss_dssp             TTSCCCSCEEEEEEE
T ss_pred             ccCCCCCCCcEEEEc
Confidence            542    27888764

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.54  E-value=1.4e-07  Score=84.95  Aligned_cols=77  Identities=18%  Similarity=0.051  Sum_probs=55.4

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +++|.+. .+++.+.....++.+|||||||+|+++..+++..    +|+|+|+++.|++.        .      .++.+
T Consensus         5 ~P~~~~~-~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--------~------~~~~~   65 (170)
T 3q87_B            5 EPGEDTY-TLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--------H------RGGNL   65 (170)
T ss_dssp             CCCHHHH-HHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--------C------SSSCE
T ss_pred             CcCccHH-HHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--------c------cCCeE
Confidence            4455443 3334442112567899999999999999998764    89999999999987        1      25677


Q ss_pred             EEcCCCC----CCccEEEEE
Q psy14969        658 MRTLPPQ----QDASRVNIS  673 (687)
Q Consensus       658 I~GDAed----aPFDLILVV  673 (687)
                      +.+|...    ..||+|+..
T Consensus        66 ~~~d~~~~~~~~~fD~i~~n   85 (170)
T 3q87_B           66 VRADLLCSINQESVDVVVFN   85 (170)
T ss_dssp             EECSTTTTBCGGGCSEEEEC
T ss_pred             EECChhhhcccCCCCEEEEC
Confidence            8888653    458988764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.54  E-value=2.1e-07  Score=94.16  Aligned_cols=83  Identities=11%  Similarity=-0.041  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCC-cEEEEEc
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG-VVNIMRT  660 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsg-RI~LI~G  660 (687)
                      .....+.+.+. ...++.+|||+|||+|.++..+++..   ++|+++|+++.+++.|++|++.+++    .. ++.++.+
T Consensus       139 ~~~~~l~~~~~-~~~~~~~VLDlgcGtG~~sl~la~~g---a~V~~VD~s~~al~~a~~n~~~~gl----~~~~v~~i~~  210 (332)
T 2igt_A          139 VHWEWLKNAVE-TADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGL----EQAPIRWICE  210 (332)
T ss_dssp             HHHHHHHHHHH-HSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTC----TTSCEEEECS
T ss_pred             HHHHHHHHHHH-hcCCCCcEEEcccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCC----CccceEEEEC
Confidence            34444555542 13467899999999999999999863   2999999999999999999999887    33 5899999


Q ss_pred             CCC---------CCCccEEEE
Q psy14969        661 LPP---------QQDASRVNI  672 (687)
Q Consensus       661 DAe---------daPFDLILV  672 (687)
                      |+.         ...||+|++
T Consensus       211 D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          211 DAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             CHHHHHHHHHHHTCCBSEEEE
T ss_pred             cHHHHHHHHHhcCCCceEEEE
Confidence            964         246998866

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.52  E-value=4e-07  Score=94.51  Aligned_cols=89  Identities=12%  Similarity=0.059  Sum_probs=71.3

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCC------------------------------------
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRP------------------------------------  621 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP------------------------------------  621 (687)
                      -..+.+.+.++...  ...++..|||.+||||.+++.+|..+..                                    
T Consensus       184 pl~e~lAa~ll~l~--~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~  261 (393)
T 3k0b_A          184 PIKETMAAALVLLT--SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYD  261 (393)
T ss_dssp             SCCHHHHHHHHHHS--CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred             CCcHHHHHHHHHHh--CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhccc
Confidence            34567777777765  6778899999999999999888876531                                    


Q ss_pred             -CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccEEEE
Q psy14969        622 -HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASRVNI  672 (687)
Q Consensus       622 -~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDLILV  672 (687)
                       ..+|+|+|+++.|++.|++|+..+++    .+++.+..+|+...    +||+|+.
T Consensus       262 ~~~~V~GvDid~~al~~Ar~Na~~~gl----~~~I~~~~~D~~~~~~~~~fD~Iv~  313 (393)
T 3k0b_A          262 QPLNIIGGDIDARLIEIAKQNAVEAGL----GDLITFRQLQVADFQTEDEYGVVVA  313 (393)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTC----TTCSEEEECCGGGCCCCCCSCEEEE
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChHhCCCCCCCCEEEE
Confidence             14699999999999999999999998    56799999986543    4786643

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.52  E-value=5.2e-08  Score=95.59  Aligned_cols=72  Identities=14%  Similarity=0.077  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCH-------HHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHME-------YLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---  664 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISp-------eAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---  664 (687)
                      +.++.+|||+|||+|..+..+|+..   ++|+|+|+++       .+++.|+++++.+++    ..++.++.+|+..   
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~----~~ri~~~~~d~~~~l~  153 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQDT----AARINLHFGNAAEQMP  153 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH----HTTEEEEESCHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhhCC----ccCeEEEECCHHHHHH
Confidence            4567899999999999999999874   4899999999       999999999887775    4569999999653   


Q ss_pred             ------CCccEEEEE
Q psy14969        665 ------QDASRVNIS  673 (687)
Q Consensus       665 ------aPFDLILVV  673 (687)
                            ..||+|++.
T Consensus       154 ~~~~~~~~fD~V~~d  168 (258)
T 2r6z_A          154 ALVKTQGKPDIVYLD  168 (258)
T ss_dssp             HHHHHHCCCSEEEEC
T ss_pred             hhhccCCCccEEEEC
Confidence                  469988764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.52  E-value=3.1e-07  Score=94.95  Aligned_cols=83  Identities=12%  Similarity=0.114  Sum_probs=68.2

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+...+  .+.+|.+|||+|||+|..|..+++..+ .++|+|+|+++.+++.++++++..++      ++.++.+|+
T Consensus       234 ~s~~~~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~------~~~~~~~D~  304 (429)
T 1sqg_A          234 SAQGCMTWL--APQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDG  304 (429)
T ss_dssp             HHHTHHHHH--CCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCT
T ss_pred             HHHHHHHHc--CCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCC------CeEEEeCch
Confidence            333444445  678899999999999999999999874 58999999999999999999999886      467888887


Q ss_pred             CC-------CCccEEEEEe
Q psy14969        663 PQ-------QDASRVNISV  674 (687)
Q Consensus       663 ed-------aPFDLILVVf  674 (687)
                      ..       ..||.|++..
T Consensus       305 ~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          305 RYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             TCTHHHHTTCCEEEEEEEC
T ss_pred             hhchhhcccCCCCEEEEeC
Confidence            64       3589887653

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.52  E-value=1.6e-07  Score=93.87  Aligned_cols=82  Identities=16%  Similarity=0.096  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+++.+  ...++.+|||||||+|.++..+++.. |.++|+++|+++.+++.|++++...+.      .+.++.+|.
T Consensus       184 ~~~~ll~~l--~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~------~~~~~~~d~  254 (343)
T 2pjd_A          184 GSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGV------EGEVFASNV  254 (343)
T ss_dssp             HHHHHHHHS--CTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTC------CCEEEECST
T ss_pred             HHHHHHHhc--CcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------CCEEEEccc
Confidence            345556655  34567799999999999999999886 567999999999999999999999876      345677775


Q ss_pred             C---CCCccEEEEE
Q psy14969        663 P---QQDASRVNIS  673 (687)
Q Consensus       663 e---daPFDLILVV  673 (687)
                      .   ...||+|+..
T Consensus       255 ~~~~~~~fD~Iv~~  268 (343)
T 2pjd_A          255 FSEVKGRFDMIISN  268 (343)
T ss_dssp             TTTCCSCEEEEEEC
T ss_pred             cccccCCeeEEEEC
Confidence            4   3458877654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.51  E-value=2.5e-07  Score=95.45  Aligned_cols=69  Identities=17%  Similarity=0.146  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRV  670 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLI  670 (687)
                      .++.+|||+|||+|+++..+++..   .+|+|+|+++.+++.|+++++.+++      .+.++.+|...     ..||+|
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~~------~v~~~~~D~~~~~~~~~~fD~I  302 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANAL------KAQALHSDVDEALTEEARFDII  302 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTTC------CCEEEECSTTTTSCTTCCEEEE
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEcchhhccccCCCeEEE
Confidence            367899999999999999999873   4999999999999999999999886      47888888653     468877


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      +..
T Consensus       303 i~n  305 (381)
T 3dmg_A          303 VTN  305 (381)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            653

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.49  E-value=2.7e-07  Score=92.64  Aligned_cols=70  Identities=21%  Similarity=0.233  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--CccEEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ--DASRVNI  672 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda--PFDLILV  672 (687)
                      +.++.+|||+|||+|+++.. |+.   .++|+|+|+++.+++.|++|++.+++    ..++.++.+|+...  .||+|++
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l----~~~v~~~~~D~~~~~~~fD~Vi~  264 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKL----EHKIIPILSDVREVDVKGNRVIM  264 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCGGGCCCCEEEEEE
T ss_pred             cCCCCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECChHHhcCCCcEEEE
Confidence            46889999999999999999 762   45999999999999999999999987    56799999997664  6888765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.49  E-value=6.6e-07  Score=88.30  Aligned_cols=79  Identities=20%  Similarity=0.205  Sum_probs=65.1

Q ss_pred             HHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-C
Q psy14969        587 SLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-Q  665 (687)
Q Consensus       587 LLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-a  665 (687)
                      +++.+  .+.++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++++...++    ..++.++.+|... .
T Consensus       175 l~~~~--~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~  246 (360)
T 1tw3_A          175 PAAAY--DWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFEPL  246 (360)
T ss_dssp             HHHHS--CCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTSCC
T ss_pred             HHHhC--CCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCCCC
Confidence            34444  46678899999999999999999887 5789999999 9999999999999886    5689999999643 2


Q ss_pred             --CccEEEEE
Q psy14969        666 --DASRVNIS  673 (687)
Q Consensus       666 --PFDLILVV  673 (687)
                        .||+|+..
T Consensus       247 ~~~~D~v~~~  256 (360)
T 1tw3_A          247 PRKADAIILS  256 (360)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCCccEEEEc
Confidence              27877664

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.49  E-value=4.3e-07  Score=93.75  Aligned_cols=91  Identities=16%  Similarity=0.142  Sum_probs=71.7

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC-------------------------------------C
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR-------------------------------------P  621 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG-------------------------------------P  621 (687)
                      ..+.+.+.++...  ...++.+|||.|||||.+++.+|..+.                                     +
T Consensus       179 l~e~lAa~ll~~~--~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  256 (385)
T 3ldu_A          179 IRETLAAGLIYLT--PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES  256 (385)
T ss_dssp             CCHHHHHHHHHTS--CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred             CcHHHHHHHHHhh--CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence            3556777777655  677889999999999999999887752                                     1


Q ss_pred             CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccEEEEEecCC
Q psy14969        622 HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASRVNISVEPQ  677 (687)
Q Consensus       622 ~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDLILVVfAP~  677 (687)
                      ..+|+|+|+++.|++.|++|+..+++    .+.+.+..+|..+.    +||+|+  ..|+
T Consensus       257 ~~~V~GvDid~~ai~~Ar~Na~~~gl----~~~i~~~~~D~~~l~~~~~~D~Iv--~NPP  310 (385)
T 3ldu_A          257 KFKIYGYDIDEESIDIARENAEIAGV----DEYIEFNVGDATQFKSEDEFGFII--TNPP  310 (385)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEECCGGGCCCSCBSCEEE--ECCC
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChhhcCcCCCCcEEE--ECCC
Confidence            15799999999999999999999997    56799999986643    477553  3444

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.49  E-value=3.3e-07  Score=83.87  Aligned_cols=77  Identities=14%  Similarity=0.047  Sum_probs=58.5

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-  664 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-  664 (687)
                      .+...+  ...++.+|||||||+|.++..+++..  ..+|+|+|+++.+++.|+++...        .++.++.++... 
T Consensus        34 ~l~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~  101 (243)
T 3bkw_A           34 ALRAML--PEVGGLRIVDLGCGFGWFCRWAHEHG--ASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKL  101 (243)
T ss_dssp             HHHHHS--CCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGGC
T ss_pred             HHHHhc--cccCCCEEEEEcCcCCHHHHHHHHCC--CCeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhhc
Confidence            344444  44578899999999999999998873  23899999999999999886532        257888887643 


Q ss_pred             ----CCccEEEEEe
Q psy14969        665 ----QDASRVNISV  674 (687)
Q Consensus       665 ----aPFDLILVVf  674 (687)
                          ..||+|+...
T Consensus       102 ~~~~~~fD~v~~~~  115 (243)
T 3bkw_A          102 HLPQDSFDLAYSSL  115 (243)
T ss_dssp             CCCTTCEEEEEEES
T ss_pred             cCCCCCceEEEEec
Confidence                3488887653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.48  E-value=3.5e-07  Score=90.05  Aligned_cols=75  Identities=17%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             cCCC-CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC------C
Q psy14969        594 KLKP-GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ------D  666 (687)
Q Consensus       594 dLkp-G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda------P  666 (687)
                      .+.+ +.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++++...++    ..++.++.+|....      .
T Consensus       175 ~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~  248 (352)
T 3mcz_A          175 GVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDL----GGRVEFFEKNLLDARNFEGGA  248 (352)
T ss_dssp             GGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTC----GGGEEEEECCTTCGGGGTTCC
T ss_pred             CCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCC----CCceEEEeCCcccCcccCCCC
Confidence            3445 7899999999999999999887 5789999999 8999999999999886    56899999996543      3


Q ss_pred             ccEEEEEe
Q psy14969        667 ASRVNISV  674 (687)
Q Consensus       667 FDLILVVf  674 (687)
                      ||+|+...
T Consensus       249 ~D~v~~~~  256 (352)
T 3mcz_A          249 ADVVMLND  256 (352)
T ss_dssp             EEEEEEES
T ss_pred             ccEEEEec
Confidence            88887653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.47  E-value=9.6e-07  Score=77.20  Aligned_cols=66  Identities=18%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      +.++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|++++.          ++.++.++...     ..||+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~----------~~~~~~~d~~~~~~~~~~~D~  110 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDFP----------EARWVVGDLSVDQISETDFDL  110 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTSCCCCCCEEE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhCC----------CCcEEEcccccCCCCCCceeE
Confidence            5688999999999999999999873   489999999999999998752          35667776543     34787


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       111 i~~~  114 (195)
T 3cgg_A          111 IVSA  114 (195)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.46  E-value=5e-07  Score=90.74  Aligned_cols=73  Identities=12%  Similarity=0.000  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----C--CccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----Q--DASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----a--PFDL  669 (687)
                      ..+.+|||||||+|.++..+++.. |..+|+++|+ +.+++.|+++++..++    ..++.++.+|...    .  .||+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~p~~~D~  251 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSG----SERIHGHGANLLDRDVPFPTGFDA  251 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTT----GGGEEEEECCCCSSSCCCCCCCSE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCc----ccceEEEEccccccCCCCCCCcCE
Confidence            356899999999999999999987 5789999999 9999999999988776    5689999999764    3  4898


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus       252 v~~~~  256 (363)
T 3dp7_A          252 VWMSQ  256 (363)
T ss_dssp             EEEES
T ss_pred             EEEec
Confidence            87754

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.46  E-value=3.2e-07  Score=94.10  Aligned_cols=75  Identities=15%  Similarity=0.046  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCC-cEEEEEcCCCC---------C
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG-VVNIMRTLPPQ---------Q  665 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsg-RI~LI~GDAed---------a  665 (687)
                      .++.+|||+|||||.++..+|+..  ..+|+|+|+++.|++.|++|++.+++    .. ++.++.+|+..         .
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~----~~~~v~~~~~D~~~~l~~~~~~~~  284 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHL----DMANHQLVVMDVFDYFKYARRHHL  284 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTC----CCTTEEEEESCHHHHHHHHHHTTC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCC----CccceEEEECCHHHHHHHHHHhCC
Confidence            578899999999999999999753  24899999999999999999999987    44 79999999642         3


Q ss_pred             CccEEEEEecCCC
Q psy14969        666 DASRVNISVEPQK  678 (687)
Q Consensus       666 PFDLILVVfAP~K  678 (687)
                      .||+|++  .|+.
T Consensus       285 ~fD~Ii~--DPP~  295 (385)
T 2b78_A          285 TYDIIII--DPPS  295 (385)
T ss_dssp             CEEEEEE--CCCC
T ss_pred             CccEEEE--CCCC
Confidence            6887754  4554

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.46  E-value=1.1e-06  Score=85.01  Aligned_cols=87  Identities=15%  Similarity=0.111  Sum_probs=67.8

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|....++...    +.++++||||||  ||.|++||++.  +++|++||++++.++.|+++++++++  +..+++.++
T Consensus        16 v~~~~~~~L~~~----l~~a~~VLEiGt--GySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~g~--~~~~~I~~~   85 (202)
T 3cvo_A           16 MPPAEAEALRMA----YEEAEVILEYGS--GGSTVVAAELP--GKHVTSVESDRAWARMMKAWLAANPP--AEGTEVNIV   85 (202)
T ss_dssp             SCHHHHHHHHHH----HHHCSEEEEESC--SHHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHSCC--CTTCEEEEE
T ss_pred             CCHHHHHHHHHH----hhCCCEEEEECc--hHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCCceEEE
Confidence            345455555443    346789999997  69999999853  57999999999999999999999884  123689999


Q ss_pred             EcCCC-----------------------------CCCccEEEEEec
Q psy14969        659 RTLPP-----------------------------QQDASRVNISVE  675 (687)
Q Consensus       659 ~GDAe-----------------------------daPFDLILVVfA  675 (687)
                      .|++.                             ..+||+|++.+.
T Consensus        86 ~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~  131 (202)
T 3cvo_A           86 WTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR  131 (202)
T ss_dssp             ECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred             EeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC
Confidence            99842                             257999999875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.46  E-value=7e-07  Score=87.65  Aligned_cols=73  Identities=18%  Similarity=0.043  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-CC--CccEEEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-QQ--DASRVNI  672 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-da--PFDLILV  672 (687)
                      .++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++++...++    ..++.++.+|.. ..  .||+|+.
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~p~~~D~v~~  241 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGL----SGRAQVVVGSFFDPLPAGAGGYVL  241 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCCCSCSEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCc----CcCeEEecCCCCCCCCCCCcEEEE
Confidence            456899999999999999999987 5789999999 9999999999999887    678999999863 23  5898877


Q ss_pred             Ee
Q psy14969        673 SV  674 (687)
Q Consensus       673 Vf  674 (687)
                      ..
T Consensus       242 ~~  243 (332)
T 3i53_A          242 SA  243 (332)
T ss_dssp             ES
T ss_pred             eh
Confidence            53

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.46  E-value=1.3e-06  Score=88.02  Aligned_cols=74  Identities=16%  Similarity=0.091  Sum_probs=63.9

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-CC--CccEE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-QQ--DASRV  670 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-da--PFDLI  670 (687)
                      ...++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++++...++    ..++.++.+|.. ..  .||+|
T Consensus       199 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l----~~~v~~~~~d~~~~~p~~~D~v  272 (369)
T 3gwz_A          199 DFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGL----ADRCEILPGDFFETIPDGADVY  272 (369)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTTCCCSSCSEE
T ss_pred             CCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCc----CCceEEeccCCCCCCCCCceEE
Confidence            45678899999999999999999986 5789999999 9999999999999886    678999999864 22  58988


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      +..
T Consensus       273 ~~~  275 (369)
T 3gwz_A          273 LIK  275 (369)
T ss_dssp             EEE
T ss_pred             Ehh
Confidence            765

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.45  E-value=1.9e-07  Score=83.83  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      ..+++.+  ...++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|+++
T Consensus        42 ~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           42 QAILLAI--LGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             HHHHHHH--HHTCCSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHHh--hcCCCCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHh
Confidence            3444444  34467899999999999999999873   4899999999999999987

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.45  E-value=4.4e-07  Score=86.98  Aligned_cols=60  Identities=12%  Similarity=0.059  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                      +...+.+.+.....++.+|||||||+|.++..++...  ..+|+|+|+++.|++.|+++++.
T Consensus        57 ~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~  116 (289)
T 2g72_A           57 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQE  116 (289)
T ss_dssp             HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhh
Confidence            3445555552222477899999999999554444332  35999999999999999997654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.44  E-value=3.2e-07  Score=85.25  Aligned_cols=74  Identities=22%  Similarity=0.184  Sum_probs=54.9

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+...+ ..+.++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|+++             +.++.++.
T Consensus        28 ~~~~~~~~l-~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~   90 (240)
T 3dli_A           28 VKARLRRYI-PYFKGCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEGK-------------FNVVKSDA   90 (240)
T ss_dssp             HHHHHGGGG-GGTTTCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHTT-------------SEEECSCH
T ss_pred             HHHHHHHHH-hhhcCCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-------------cceeeccH
Confidence            444444333 356788999999999999999999874   3799999999999999876             23344442


Q ss_pred             -------CCCCccEEEEE
Q psy14969        663 -------PQQDASRVNIS  673 (687)
Q Consensus       663 -------edaPFDLILVV  673 (687)
                             +...||+|+..
T Consensus        91 ~~~~~~~~~~~fD~i~~~  108 (240)
T 3dli_A           91 IEYLKSLPDKYLDGVMIS  108 (240)
T ss_dssp             HHHHHTSCTTCBSEEEEE
T ss_pred             HHHhhhcCCCCeeEEEEC
Confidence                   34569998875

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.44  E-value=2.8e-07  Score=80.68  Aligned_cols=68  Identities=18%  Similarity=0.209  Sum_probs=54.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC--CCCCccEEE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP--PQQDASRVN  671 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA--edaPFDLIL  671 (687)
                      .+.++.+|||||||+|.++..+++...   +|+|+|+++.+++.|+++     .     .++.++.++.  +...||+|+
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~-----~~v~~~~~d~~~~~~~~D~v~   80 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK-----F-----DSVITLSDPKEIPDNSVDFIL   80 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH-----C-----TTSEEESSGGGSCTTCEEEEE
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh-----C-----CCcEEEeCCCCCCCCceEEEE
Confidence            467888999999999999999998863   899999999999999998     1     2566666662  234589887


Q ss_pred             EEe
Q psy14969        672 ISV  674 (687)
Q Consensus       672 VVf  674 (687)
                      ...
T Consensus        81 ~~~   83 (170)
T 3i9f_A           81 FAN   83 (170)
T ss_dssp             EES
T ss_pred             Ecc
Confidence            654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.44  E-value=1e-06  Score=91.46  Aligned_cols=87  Identities=15%  Similarity=0.112  Sum_probs=70.2

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCC-------------------------------------
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRP-------------------------------------  621 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP-------------------------------------  621 (687)
                      ..+.+.+.++...  ...++..+||.+||||.+++.+|..+..                                     
T Consensus       178 l~e~LAaall~l~--~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  255 (384)
T 3ldg_A          178 IKENMAAAIILLS--NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI  255 (384)
T ss_dssp             CCHHHHHHHHHHT--TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CcHHHHHHHHHHh--CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence            3556777777665  6778899999999999999888876531                                     


Q ss_pred             CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccEEE
Q psy14969        622 HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASRVN  671 (687)
Q Consensus       622 ~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDLIL  671 (687)
                      ..+|+|+|+++.|++.|++|++.+++    .+++.+..+|....    .||+|+
T Consensus       256 ~~~v~GvDid~~al~~Ar~Na~~~gl----~~~I~~~~~D~~~l~~~~~fD~Iv  305 (384)
T 3ldg_A          256 QLDISGFDFDGRMVEIARKNAREVGL----EDVVKLKQMRLQDFKTNKINGVLI  305 (384)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCGGGCCCCCCSCEEE
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChHHCCccCCcCEEE
Confidence            14699999999999999999999998    66799999986543    477654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.40  E-value=8e-07  Score=88.11  Aligned_cols=78  Identities=15%  Similarity=0.050  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-------CCCCc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-------PQQDA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-------edaPF  667 (687)
                      ..++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...... ....++.++.+|+       ....|
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~~~~~f  170 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRS-LADPRATVRVGDGLAFVRQTPDNTY  170 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHHhccCCce
Confidence            3567899999999999999999774 3569999999999999999988542110 1246899999985       24569


Q ss_pred             cEEEEEe
Q psy14969        668 SRVNISV  674 (687)
Q Consensus       668 DLILVVf  674 (687)
                      |+|++..
T Consensus       171 DvIi~d~  177 (304)
T 3bwc_A          171 DVVIIDT  177 (304)
T ss_dssp             EEEEEEC
T ss_pred             eEEEECC
Confidence            9998864

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.39  E-value=7.5e-07  Score=90.64  Aligned_cols=76  Identities=14%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCccCCCcEEEEEcCCC-------CC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN--HAHLLDEGVVNIMRTLPP-------QQ  665 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka--G~~VaSsgRI~LI~GDAe-------da  665 (687)
                      ..++.+|||||||+|+++..+++.. +..+|+++|+++.+++.|+++++..  ++   ...++.++.+|+.       ..
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl---~~~rv~~~~~D~~~~l~~~~~~  193 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGY---EDPRVNLVIGDGVAFLKNAAEG  193 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGG---GSTTEEEEESCHHHHHHTSCTT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcccc---CCCcEEEEECCHHHHHHhccCC
Confidence            4567899999999999999999874 4679999999999999999998763  22   2358999999952       34


Q ss_pred             CccEEEEEe
Q psy14969        666 DASRVNISV  674 (687)
Q Consensus       666 PFDLILVVf  674 (687)
                      .||+|++..
T Consensus       194 ~fDlIi~d~  202 (334)
T 1xj5_A          194 SYDAVIVDS  202 (334)
T ss_dssp             CEEEEEECC
T ss_pred             CccEEEECC
Confidence            699998753

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.39  E-value=3.8e-07  Score=81.98  Aligned_cols=64  Identities=17%  Similarity=0.219  Sum_probs=52.4

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEEEE
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRVNI  672 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLILV  672 (687)
                      +.+|||||||+|.++..+++..   .+|+|+|+++.+++.|+++.          .++.++.++...     ..||+|+.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHC----------TTSEEECCCGGGGGGSCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccccccCCCCeEEEEe
Confidence            7899999999999999999873   38999999999999999872          246777777543     45898887


Q ss_pred             Ee
Q psy14969        673 SV  674 (687)
Q Consensus       673 Vf  674 (687)
                      ..
T Consensus       109 ~~  110 (203)
T 3h2b_A          109 WY  110 (203)
T ss_dssp             ES
T ss_pred             hh
Confidence            54

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.39  E-value=9.1e-07  Score=88.38  Aligned_cols=76  Identities=13%  Similarity=-0.016  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCccCCCcEEEEEcCCC------CCC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN--HAHLLDEGVVNIMRTLPP------QQD  666 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka--G~~VaSsgRI~LI~GDAe------daP  666 (687)
                      ..++.+|||||||+|+++..+++.. +..+|+++|+++.+++.|++++...  ++   ...++.++.+|+.      ...
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~---~~~rv~v~~~Da~~~l~~~~~~  168 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGY---SSSKLTLHVGDGFEFMKQNQDA  168 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGG---GCTTEEEEESCHHHHHHTCSSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhccc---CCCcEEEEECcHHHHHhhCCCC
Confidence            3567899999999999999999874 4679999999999999999998762  21   2358999999863      356


Q ss_pred             ccEEEEEe
Q psy14969        667 ASRVNISV  674 (687)
Q Consensus       667 FDLILVVf  674 (687)
                      ||+|++..
T Consensus       169 fD~Ii~d~  176 (304)
T 2o07_A          169 FDVIITDS  176 (304)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEECC
Confidence            99998864

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.37  E-value=1.3e-06  Score=87.19  Aligned_cols=73  Identities=10%  Similarity=0.056  Sum_probs=59.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCC----cEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPH----GKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QD  666 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~----GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aP  666 (687)
                      ..++.+|||+|||||.++..+++.+...    ..|+|+|+++.+++.|+.++...++      ++.++.+|...    ..
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~------~~~i~~~D~l~~~~~~~  201 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ------KMTLLHQDGLANLLVDP  201 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCTTSCCCCCC
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC------CceEEECCCCCccccCC
Confidence            4467899999999999999998887322    6899999999999999999998775      56788888643    45


Q ss_pred             ccEEEEE
Q psy14969        667 ASRVNIS  673 (687)
Q Consensus       667 FDLILVV  673 (687)
                      ||+|+..
T Consensus       202 fD~Ii~N  208 (344)
T 2f8l_A          202 VDVVISD  208 (344)
T ss_dssp             EEEEEEE
T ss_pred             ccEEEEC
Confidence            8876544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.37  E-value=8.4e-07  Score=86.87  Aligned_cols=77  Identities=18%  Similarity=0.077  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCcc------CCCcEEEEEcCCC-----
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL------DEGVVNIMRTLPP-----  663 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~Va------SsgRI~LI~GDAe-----  663 (687)
                      ..++.+|||||||+|+++..+++. + .++|+++|+++.+++.|++++ ...-.+.      ...++.++.+|+.     
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~  149 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  149 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc
Confidence            346789999999999999999987 3 579999999999999999988 4310010      2468999999863     


Q ss_pred             CCCccEEEEEe
Q psy14969        664 QQDASRVNISV  674 (687)
Q Consensus       664 daPFDLILVVf  674 (687)
                      ...||+|++..
T Consensus       150 ~~~fD~Ii~d~  160 (281)
T 1mjf_A          150 NRGFDVIIADS  160 (281)
T ss_dssp             CCCEEEEEEEC
T ss_pred             cCCeeEEEECC
Confidence            34699998764

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.37  E-value=6.2e-07  Score=89.45  Aligned_cols=79  Identities=20%  Similarity=0.126  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      ..++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+.......++.++.+|+.      ...||
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCcc
Confidence            3466899999999999999999874 3569999999999999999998752110012358999999864      34699


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++..
T Consensus       154 ~Ii~d~  159 (314)
T 1uir_A          154 VVIIDL  159 (314)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            998874

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.36  E-value=8.3e-07  Score=87.02  Aligned_cols=77  Identities=17%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL  669 (687)
                      ..+.+|||||||+|+++..+++.. +..+|+++|+++.+++.|+++++...-. ....++.++.+|+.      ...||+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~~l~~~~~~fD~  151 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAKSENQYDV  151 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCeeE
Confidence            357899999999999999998774 3569999999999999999998753110 12468999999964      346999


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |++..
T Consensus       152 Ii~d~  156 (275)
T 1iy9_A          152 IMVDS  156 (275)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            98853

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.36  E-value=1.4e-06  Score=78.84  Aligned_cols=65  Identities=20%  Similarity=0.325  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      +.++.+|||||||+|.++..+    + ..+|+|+|+++.+++.|++++          .++.++.++...     ..||+
T Consensus        34 ~~~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~   98 (211)
T 2gs9_A           34 LPPGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEALPFPGESFDV   98 (211)
T ss_dssp             CCCCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC----------TTSEEECCCTTSCCSCSSCEEE
T ss_pred             cCCCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcccccCCCCCCcEEE
Confidence            447889999999999998876    2 228999999999999999886          145666766543     34788


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus        99 v~~~~  103 (211)
T 2gs9_A           99 VLLFT  103 (211)
T ss_dssp             EEEES
T ss_pred             EEEcC
Confidence            87653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.35  E-value=8.9e-07  Score=90.27  Aligned_cols=76  Identities=16%  Similarity=0.136  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---------CC
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---------QD  666 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---------aP  666 (687)
                      .++.+|||+|||+|.++..+|+..  ..+|+|+|+++.+++.|++|++.+++.   ..++.++.+|+..         ..
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~---~~~v~~~~~D~~~~~~~~~~~~~~  293 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRTYRDRGEK  293 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECCHHHHHHHHHhcCCC
Confidence            478899999999999999999873  349999999999999999999988740   1278999999642         46


Q ss_pred             ccEEEEEecCCC
Q psy14969        667 ASRVNISVEPQK  678 (687)
Q Consensus       667 FDLILVVfAP~K  678 (687)
                      ||+|++  .|+.
T Consensus       294 fD~Ii~--dpP~  303 (396)
T 3c0k_A          294 FDVIVM--DPPK  303 (396)
T ss_dssp             EEEEEE--CCSS
T ss_pred             CCEEEE--CCCC
Confidence            887755  4544

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.35  E-value=4.2e-07  Score=86.85  Aligned_cols=49  Identities=16%  Similarity=0.142  Sum_probs=40.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN  645 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka  645 (687)
                      ..+|.+|||||||+|.++..++....  .+|+|+|+|+.|++.|+++++..
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~  101 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcC
Confidence            45788999999999988776664431  37999999999999999988664

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.35  E-value=5.2e-07  Score=91.77  Aligned_cols=74  Identities=22%  Similarity=0.215  Sum_probs=62.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---------C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------Q  664 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------d  664 (687)
                      .+ ++.+|||+|||+|..+..+|+..   .+|+|+|+++.+++.|++|++.+++    . ++.++.+|+.         .
T Consensus       207 ~~-~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~----~-~~~~~~~d~~~~~~~~~~~~  277 (382)
T 1wxx_A          207 RF-RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGL----G-NVRVLEANAFDLLRRLEKEG  277 (382)
T ss_dssp             GC-CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTC----T-TEEEEESCHHHHHHHHHHTT
T ss_pred             hc-CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC----C-CceEEECCHHHHHHHHHhcC
Confidence            45 78899999999999999999884   4899999999999999999999987    3 3899999964         3


Q ss_pred             CCccEEEEEecCCC
Q psy14969        665 QDASRVNISVEPQK  678 (687)
Q Consensus       665 aPFDLILVVfAP~K  678 (687)
                      ..||+|++  .|+.
T Consensus       278 ~~fD~Ii~--dpP~  289 (382)
T 1wxx_A          278 ERFDLVVL--DPPA  289 (382)
T ss_dssp             CCEEEEEE--CCCC
T ss_pred             CCeeEEEE--CCCC
Confidence            46887764  5554

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.35  E-value=1.2e-06  Score=85.74  Aligned_cols=80  Identities=19%  Similarity=0.177  Sum_probs=64.2

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      ..+++.+  .+.+ .+|||||||+|..+..+++.. |..+++++|+ +.+++.|++++...++    ..++.++.+|...
T Consensus       158 ~~~~~~~--~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~  228 (334)
T 2ip2_A          158 HEIPRLL--DFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLA----GERVSLVGGDMLQ  228 (334)
T ss_dssp             HHHHHHS--CCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHH----TTSEEEEESCTTT
T ss_pred             HHHHHhC--CCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCC----CCcEEEecCCCCC
Confidence            3444443  3455 899999999999999999887 5779999999 9999999999887765    5689999998643


Q ss_pred             ---CCccEEEEE
Q psy14969        665 ---QDASRVNIS  673 (687)
Q Consensus       665 ---aPFDLILVV  673 (687)
                         ..||+|+..
T Consensus       229 ~~~~~~D~v~~~  240 (334)
T 2ip2_A          229 EVPSNGDIYLLS  240 (334)
T ss_dssp             CCCSSCSEEEEE
T ss_pred             CCCCCCCEEEEc
Confidence               248988765

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.34  E-value=4.8e-07  Score=92.07  Aligned_cols=76  Identities=25%  Similarity=0.274  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---------CC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------QQ  665 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------da  665 (687)
                      .+++.+|||+|||+|.++..+|+. + .++|+|+|+++.+++.|+++++.+++    ..++.++.+|+.         ..
T Consensus       215 ~~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~----~~~v~~~~~d~~~~~~~~~~~~~  288 (396)
T 2as0_A          215 VQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEKLQKKGE  288 (396)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHTTC
T ss_pred             hhCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEECCHHHHHHHHHhhCC
Confidence            347899999999999999999987 2 34899999999999999999999887    347999999963         34


Q ss_pred             CccEEEEEecCCC
Q psy14969        666 DASRVNISVEPQK  678 (687)
Q Consensus       666 PFDLILVVfAP~K  678 (687)
                      .||+|++  .|+.
T Consensus       289 ~fD~Vi~--dpP~  299 (396)
T 2as0_A          289 KFDIVVL--DPPA  299 (396)
T ss_dssp             CEEEEEE--CCCC
T ss_pred             CCCEEEE--CCCC
Confidence            6887765  4554

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.34  E-value=8.7e-07  Score=87.72  Aligned_cols=77  Identities=13%  Similarity=0.103  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR  669 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL  669 (687)
                      ..+.+|||||||+|..+..+++.. +.++|+++|+++.+++.|+++++..+. .....++.++.+|+.      ...||+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fD~  166 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIANGAEYVRKFKNEFDV  166 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhcc-ccCCCceEEEECcHHHHHhhCCCCceE
Confidence            456899999999999999999875 357999999999999999999865210 012358999999853      345999


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |++..
T Consensus       167 Ii~d~  171 (296)
T 1inl_A          167 IIIDS  171 (296)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            98753

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.33  E-value=2.7e-06  Score=83.22  Aligned_cols=73  Identities=12%  Similarity=0.124  Sum_probs=54.7

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCc---cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGS---GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGT---GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      +...+++.+. ...+..+|||||||+   |.++..+++.. |.++|+++|+++.|++.|++++..       ..++.++.
T Consensus        64 ~~~~~~~~l~-~~~~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~  134 (274)
T 2qe6_A           64 VLVRGVRFLA-GEAGISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFT  134 (274)
T ss_dssp             HHHHHHHHHH-TTTCCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEE
T ss_pred             HHHHHHHHHh-hccCCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEE
Confidence            3344444441 123447999999999   98887766664 678999999999999999998743       24789999


Q ss_pred             cCCCC
Q psy14969        660 TLPPQ  664 (687)
Q Consensus       660 GDAed  664 (687)
                      +|...
T Consensus       135 ~D~~~  139 (274)
T 2qe6_A          135 ADVRD  139 (274)
T ss_dssp             CCTTC
T ss_pred             eeCCC
Confidence            99753

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.32  E-value=1.3e-06  Score=87.92  Aligned_cols=78  Identities=17%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      ..++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++.... -....++.++.+|+.      ...||
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fD  191 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC-GYEDKRVNVFIEDASKFLENVTNTYD  191 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG-GGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc-ccCCCcEEEEEccHHHHHhhcCCCce
Confidence            3467899999999999999999774 357999999999999999999776310 012358999999853      35699


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++..
T Consensus       192 vIi~d~  197 (321)
T 2pt6_A          192 VIIVDS  197 (321)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            998764

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.32  E-value=7e-07  Score=86.13  Aligned_cols=76  Identities=14%  Similarity=0.080  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhc---CCCcEE--EEEeCCHHHHHHHHHHHHHc-CCCccCCCcEEEEEcCCC------
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMV---RPHGKV--YSLDHMEYLVNFSKENIRKN-HAHLLDEGVVNIMRTLPP------  663 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLV---GP~GrV--tGIDISpeAVE~ARKNLKka-G~~VaSsgRI~LI~GDAe------  663 (687)
                      .++.+|||||||+|.++..++..+   .+...|  +|+|+++.|++.|++++... ++.   .-++.+..+++.      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~  127 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE---NVKFAWHKETSSEYQSRM  127 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT---TEEEEEECSCHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC---cceEEEEecchhhhhhhh
Confidence            467799999999998776443221   145554  99999999999999998764 320   112334444432      


Q ss_pred             -----CCCccEEEEEe
Q psy14969        664 -----QQDASRVNISV  674 (687)
Q Consensus       664 -----daPFDLILVVf  674 (687)
                           ...||+|+...
T Consensus       128 ~~~~~~~~fD~V~~~~  143 (292)
T 2aot_A          128 LEKKELQKWDFIHMIQ  143 (292)
T ss_dssp             HTTTCCCCEEEEEEES
T ss_pred             ccccCCCceeEEEEee
Confidence                 35699998764

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.32  E-value=6.6e-07  Score=84.52  Aligned_cols=65  Identities=22%  Similarity=0.151  Sum_probs=50.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      +.++.+|||||||+|.++..+++..   .+|+|+|+++.+++.|+++...         .  ++.++...     ..||+
T Consensus        52 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~---------~--~~~~d~~~~~~~~~~fD~  117 (260)
T 2avn_A           52 LKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVK---------N--VVEAKAEDLPFPSGAFEA  117 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCS---------C--EEECCTTSCCSCTTCEEE
T ss_pred             cCCCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcCC---------C--EEECcHHHCCCCCCCEEE
Confidence            3478899999999999999998773   4899999999999999987431         1  45556543     34788


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |+..
T Consensus       118 v~~~  121 (260)
T 2avn_A          118 VLAL  121 (260)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.32  E-value=6.4e-07  Score=90.28  Aligned_cols=78  Identities=12%  Similarity=0.033  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      ..++.+|||||||+|+.+..+++.. +.++|+++|+++.+++.|+++++...-. +...++.++.+|+.      ...||
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~~l~~~~~~fD  183 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKNHKNEFD  183 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccc-cCCCCEEEEEChHHHHHHhcCCCce
Confidence            3456899999999999999999874 4679999999999999999988654100 12468999999864      35699


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++..
T Consensus       184 ~Ii~d~  189 (314)
T 2b2c_A          184 VIITDS  189 (314)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            998754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.32  E-value=6.5e-07  Score=76.26  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC---------
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ---------  665 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda---------  665 (687)
                      +.++.+|||||||+|..+..+++..++.++|+|+|+++ +++.               .++.++.+|....         
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~~~~~~d~~~~~~~~~~~~~   83 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGVDFLQGDFRDELVMKALLER   83 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcEEEEEcccccchhhhhhhcc
Confidence            67889999999999999999999875567999999999 6532               3678888887543         


Q ss_pred             ----CccEEEEE
Q psy14969        666 ----DASRVNIS  673 (687)
Q Consensus       666 ----PFDLILVV  673 (687)
                          .||+|+..
T Consensus        84 ~~~~~~D~i~~~   95 (180)
T 1ej0_A           84 VGDSKVQVVMSD   95 (180)
T ss_dssp             HTTCCEEEEEEC
T ss_pred             CCCCceeEEEEC
Confidence                48888764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.31  E-value=1.4e-06  Score=96.70  Aligned_cols=71  Identities=13%  Similarity=0.145  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC-CcEEEEEcCCC------CCCccE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE-GVVNIMRTLPP------QQDASR  669 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs-gRI~LI~GDAe------daPFDL  669 (687)
                      +|.+|||+|||||.++..+++..  ..+|+++|+|+.+++.|++|++.+++    . .++.++.+|+.      ...||+
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl----~~~~v~~i~~D~~~~l~~~~~~fD~  612 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGL----TGRAHRLIQADCLAWLREANEQFDL  612 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC----CSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEEecCHHHHHHhcCCCccE
Confidence            78999999999999999988753  34899999999999999999999987    3 57999999964      346998


Q ss_pred             EEEE
Q psy14969        670 VNIS  673 (687)
Q Consensus       670 ILVV  673 (687)
                      |++.
T Consensus       613 Ii~D  616 (703)
T 3v97_A          613 IFID  616 (703)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7653

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.30  E-value=6.9e-07  Score=89.55  Aligned_cols=85  Identities=7%  Similarity=-0.062  Sum_probs=63.7

Q ss_pred             cCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC
Q psy14969        573 ENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE  652 (687)
Q Consensus       573 G~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs  652 (687)
                      ..|+..+.+.++..+++.+  ...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|              
T Consensus        17 ~~g~~~TP~~l~~~~~~~~--~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------   80 (421)
T 2ih2_A           17 SLGRVETPPEVVDFMVSLA--EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------   80 (421)
T ss_dssp             ----CCCCHHHHHHHHHHC--CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------
T ss_pred             cCceEeCCHHHHHHHHHhh--ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------
Confidence            3456667778888888877  344577999999999999999998764457999999999999776              


Q ss_pred             CcEEEEEcCCCC----CCccEEEEE
Q psy14969        653 GVVNIMRTLPPQ----QDASRVNIS  673 (687)
Q Consensus       653 gRI~LI~GDAed----aPFDLILVV  673 (687)
                      .++.++.+|...    ..||+|+..
T Consensus        81 ~~~~~~~~D~~~~~~~~~fD~Ii~N  105 (421)
T 2ih2_A           81 PWAEGILADFLLWEPGEAFDLILGN  105 (421)
T ss_dssp             TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred             CCCcEEeCChhhcCccCCCCEEEEC
Confidence            256778887543    358877553

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.30  E-value=1.1e-06  Score=86.39  Aligned_cols=78  Identities=17%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      ..++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...+.. ....++.++.+|+.      ...||
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD  153 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLENVTNTYD  153 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccc-cCCCcEEEEECChHHHHHhCCCCce
Confidence            3467899999999999999998774 4679999999999999999987654311 12468999999964      35699


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++..
T Consensus       154 ~Ii~d~  159 (283)
T 2i7c_A          154 VIIVDS  159 (283)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            998863

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.29  E-value=1.1e-06  Score=81.45  Aligned_cols=49  Identities=12%  Similarity=0.120  Sum_probs=42.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN  645 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka  645 (687)
                      ..++.+|||||||+|.++..+++...  .+|+|+|+++.+++.|++++...
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~  102 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKE  102 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTC
T ss_pred             ccCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcC
Confidence            35678999999999999998886642  48999999999999999988664

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.28  E-value=2.1e-06  Score=89.20  Aligned_cols=70  Identities=16%  Similarity=0.058  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      .++|.+|||+|||||..+..+|+...   .|+|+|+++.+++.|++|++.+++    ..  .+..+|+.      ...||
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~----~~--~~~~~D~~~~l~~~~~~fD  282 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGL----RV--DIRHGEALPTLRGLEGPFH  282 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTC----CC--EEEESCHHHHHHTCCCCEE
T ss_pred             hcCCCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCC----CC--cEEEccHHHHHHHhcCCCC
Confidence            45699999999999999999998743   599999999999999999999987    22  45577743      22389


Q ss_pred             EEEEE
Q psy14969        669 RVNIS  673 (687)
Q Consensus       669 LILVV  673 (687)
                      +|++.
T Consensus       283 ~Ii~d  287 (393)
T 4dmg_A          283 HVLLD  287 (393)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.28  E-value=1.4e-06  Score=89.29  Aligned_cols=70  Identities=14%  Similarity=0.090  Sum_probs=58.5

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCccEEE
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDASRVN  671 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPFDLIL  671 (687)
                      .+|||||||+|+++..+++.. |..+|++||+++.+++.|++++...     ...++.++.+|+.       ...||+|+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~-----~~~rv~v~~~Da~~~l~~~~~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIP-----RAPRVKIRVDDARMVAESFTPASRDVII  164 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCC-----CTTTEEEEESCHHHHHHTCCTTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhcccc-----CCCceEEEECcHHHHHhhccCCCCCEEE
Confidence            399999999999999999876 4679999999999999999987542     2468999999953       35699998


Q ss_pred             EEe
Q psy14969        672 ISV  674 (687)
Q Consensus       672 VVf  674 (687)
                      +..
T Consensus       165 ~D~  167 (317)
T 3gjy_A          165 RDV  167 (317)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            863

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.27  E-value=1.8e-06  Score=89.42  Aligned_cols=73  Identities=16%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc---------------CCCccCCCcEEEEEcC
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN---------------HAHLLDEGVVNIMRTL  661 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka---------------G~~VaSsgRI~LI~GD  661 (687)
                      ++.+|||+|||||..++.+|+..+ ..+|+++|+++.+++.|++|++.+               ++     .++.++.+|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl-----~~i~v~~~D  120 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE-----KTIVINHDD  120 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS-----SEEEEEESC
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC-----CceEEEcCc
Confidence            688999999999999999999864 568999999999999999999998               65     238999999


Q ss_pred             CCC------CCccEEEEEecCC
Q psy14969        662 PPQ------QDASRVNISVEPQ  677 (687)
Q Consensus       662 Aed------aPFDLILVVfAP~  677 (687)
                      +..      ..||+|+  ..|+
T Consensus       121 a~~~~~~~~~~fD~I~--lDP~  140 (378)
T 2dul_A          121 ANRLMAERHRYFHFID--LDPF  140 (378)
T ss_dssp             HHHHHHHSTTCEEEEE--ECCS
T ss_pred             HHHHHHhccCCCCEEE--eCCC
Confidence            642      3689887  3454

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.25  E-value=3.2e-06  Score=75.81  Aligned_cols=39  Identities=21%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHH
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEY  633 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpe  633 (687)
                      +.++.+|||||||+|..+..+++..++ .++|+|+|+++.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~   59 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM   59 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence            578899999999999999999998743 589999999983

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.20  E-value=6.3e-07  Score=87.93  Aligned_cols=75  Identities=12%  Similarity=-0.100  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--CCccEEEEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--QDASRVNIS  673 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--aPFDLILVV  673 (687)
                      ..+.+|||||||+|+.+..+++. +  .+|+++|+++.+++.|+++++...- .....++.++.+|+..  .+||+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~-~~~~~rv~~~~~D~~~~~~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQLLDLDIKKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHH-HHTCTTEEEESSGGGSCCCCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhcc-ccCCCeEEEEechHHHHHhhCCEEEEC
Confidence            45689999999999999988877 4  6999999999999999987643200 0124589999999765  359999876


Q ss_pred             e
Q psy14969        674 V  674 (687)
Q Consensus       674 f  674 (687)
                      .
T Consensus       147 ~  147 (262)
T 2cmg_A          147 Q  147 (262)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.20  E-value=4.7e-06  Score=92.51  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=66.2

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC--------------------------------------
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR--------------------------------------  620 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG--------------------------------------  620 (687)
                      ..+.+.+.++...  ...++..|||.+||||.+++.+|..+.                                      
T Consensus       174 l~e~LAa~ll~~~--~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~  251 (703)
T 3v97_A          174 IKETLAAAIVMRS--GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG  251 (703)
T ss_dssp             SCHHHHHHHHHHT--TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhh--CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence            4566777777766  577888999999999999988877641                                      


Q ss_pred             ---CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        621 ---PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       621 ---P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                         +..+|+|+|+++.|++.|+.|+..+|+    .+.+.+..+|...
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv----~~~i~~~~~D~~~  294 (703)
T 3v97_A          252 LAEYSSHFYGSDSDARVIQRARTNARLAGI----GELITFEVKDVAQ  294 (703)
T ss_dssp             HHHCCCCEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEECCGGG
T ss_pred             cccCCccEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChhh
Confidence               125799999999999999999999998    5679999999754

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.17  E-value=2.9e-06  Score=86.73  Aligned_cols=72  Identities=17%  Similarity=0.038  Sum_probs=60.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDL  669 (687)
                      .+.+..+|||||||+|-++..++... |.++|+++|+++.|++.+++++..+++      ...+...|..    ..++|+
T Consensus       129 ~i~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~------~~~~~v~D~~~~~p~~~~Dv  201 (281)
T 3lcv_B          129 HLPRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNV------PHRTNVADLLEDRLDEPADV  201 (281)
T ss_dssp             GSCCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTC------CEEEEECCTTTSCCCSCCSE
T ss_pred             ccCCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCC------CceEEEeeecccCCCCCcch
Confidence            34567899999999999999998775 688999999999999999999999997      4566666643    566898


Q ss_pred             EEE
Q psy14969        670 VNI  672 (687)
Q Consensus       670 ILV  672 (687)
                      +++
T Consensus       202 aL~  204 (281)
T 3lcv_B          202 TLL  204 (281)
T ss_dssp             EEE
T ss_pred             HHH
Confidence            865

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.17  E-value=2.6e-06  Score=75.91  Aligned_cols=67  Identities=21%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCC--------cEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE-EcCCCC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPH--------GKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM-RTLPPQ  664 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~--------GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI-~GDAed  664 (687)
                      .+.++.+|||||||+|+++..+++..++.        ++|+|+|+++.+           ..     .++.++ .+|...
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-----~~~~~~~~~d~~~   82 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-----EGATFLCPADVTD   82 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-----TTCEEECSCCTTS
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-----CCCeEEEeccCCC
Confidence            36789999999999999999999997533        799999999842           11     246677 676432


Q ss_pred             -------------CCccEEEEEecC
Q psy14969        665 -------------QDASRVNISVEP  676 (687)
Q Consensus       665 -------------aPFDLILVVfAP  676 (687)
                                   ..||+|+...++
T Consensus        83 ~~~~~~~~~~~~~~~fD~V~~~~~~  107 (196)
T 2nyu_A           83 PRTSQRILEVLPGRRADVILSDMAP  107 (196)
T ss_dssp             HHHHHHHHHHSGGGCEEEEEECCCC
T ss_pred             HHHHHHHHHhcCCCCCcEEEeCCCC
Confidence                         368988876544

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.16  E-value=6.7e-06  Score=82.95  Aligned_cols=68  Identities=15%  Similarity=0.004  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVN  671 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLIL  671 (687)
                      .++.+|||||||+|-++..+.    +..+|+|+|+++.+++.+++++...+.      ...+..+|..    ..++|+++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~------~~~~~v~D~~~~~~~~~~DvvL  173 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW------DFTFALQDVLCAPPAEAGDLAL  173 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC------EEEEEECCTTTSCCCCBCSEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC------CceEEEeecccCCCCCCcchHH
Confidence            567899999999999998876    467999999999999999999988876      6677777743    34689886


Q ss_pred             EE
Q psy14969        672 IS  673 (687)
Q Consensus       672 VV  673 (687)
                      +.
T Consensus       174 ll  175 (253)
T 3frh_A          174 IF  175 (253)
T ss_dssp             EE
T ss_pred             HH
Confidence            64

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.14  E-value=3.6e-06  Score=78.09  Aligned_cols=66  Identities=21%  Similarity=0.278  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----------
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------  664 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------  664 (687)
                      ++++.+|||+|||+|..|..+++.   .++|+|+|+++..           ..     .++.++.+|...          
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-----~~v~~~~~D~~~~~~~~~~~~~   83 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-----AGVRFIRCDIFKETIFDDIDRA   83 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-----TTCEEEECCTTSSSHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-----CCeEEEEccccCHHHHHHHHHH
Confidence            578999999999999999999987   3599999999741           11     367889999654          


Q ss_pred             ------CCccEEEEEecCCCc
Q psy14969        665 ------QDASRVNISVEPQKS  679 (687)
Q Consensus       665 ------aPFDLILVVfAP~K~  679 (687)
                            .+||+|+...+|.-.
T Consensus        84 ~~~~~~~~~D~Vlsd~~~~~~  104 (191)
T 3dou_A           84 LREEGIEKVDDVVSDAMAKVS  104 (191)
T ss_dssp             HHHHTCSSEEEEEECCCCCCC
T ss_pred             hhcccCCcceEEecCCCcCCC
Confidence                  278999887766543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.12  E-value=4.4e-06  Score=75.09  Aligned_cols=63  Identities=19%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCcc
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDAS  668 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPFD  668 (687)
                      .++.+|||||||+|..+..+++. +  .+|+|+|+++.+++.|+++..            .++.++..       ...||
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~~------------~~~~~d~~~~~~~~~~~~fD   95 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKLD------------HVVLGDIETMDMPYEEEQFD   95 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTSS------------EEEESCTTTCCCCSCTTCEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhCC------------cEEEcchhhcCCCCCCCccC
Confidence            57889999999999999999987 3  599999999999999887532            34455532       24588


Q ss_pred             EEEEE
Q psy14969        669 RVNIS  673 (687)
Q Consensus       669 LILVV  673 (687)
                      +|+..
T Consensus        96 ~v~~~  100 (230)
T 3cc8_A           96 CVIFG  100 (230)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            88765

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.12  E-value=7.2e-07  Score=85.81  Aligned_cols=56  Identities=20%  Similarity=0.160  Sum_probs=43.0

Q ss_pred             HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14969        585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR  643 (687)
Q Consensus       585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK  643 (687)
                      ..+++.+. ...++.+|||||||||+++..|++..  ..+|+|+|+++.|++.|+++..
T Consensus        26 ~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g--~~~V~gvDis~~ml~~a~~~~~   81 (232)
T 3opn_A           26 EKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG--AKLVYALDVGTNQLAWKIRSDE   81 (232)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSCCCCCHHHHTCT
T ss_pred             HHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC--CCEEEEEcCCHHHHHHHHHhCc
Confidence            34444441 12356799999999999999999873  2499999999999999887544

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.12  E-value=1.2e-05  Score=83.54  Aligned_cols=94  Identities=13%  Similarity=0.119  Sum_probs=71.7

Q ss_pred             CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC------------CCcEEEEEeCCHHHHHHHHHH
Q psy14969        574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR------------PHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG------------P~GrVtGIDISpeAVE~ARKN  641 (687)
                      .|+..+.+.++..+++.+  .+.++.+|||.|||||.++..+++.+.            +...++|+|+++.+++.|+.+
T Consensus       150 ~G~fyTP~~v~~~mv~~l--~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~n  227 (445)
T 2okc_A          150 AGQYFTPRPLIQAMVDCI--NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN  227 (445)
T ss_dssp             CGGGCCCHHHHHHHHHHH--CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             CCcccCcHHHHHHHHHHh--CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHH
Confidence            345556667888888877  567788999999999999998887641            124799999999999999999


Q ss_pred             HHHcCCCccCCC-cEEEEEcCCCCC----CccEEEEE
Q psy14969        642 IRKNHAHLLDEG-VVNIMRTLPPQQ----DASRVNIS  673 (687)
Q Consensus       642 LKkaG~~VaSsg-RI~LI~GDAeda----PFDLILVV  673 (687)
                      +...++    .. .+.+..||....    .||+|+..
T Consensus       228 l~l~g~----~~~~~~i~~gD~l~~~~~~~fD~Iv~N  260 (445)
T 2okc_A          228 LYLHGI----GTDRSPIVCEDSLEKEPSTLVDVILAN  260 (445)
T ss_dssp             HHHTTC----CSSCCSEEECCTTTSCCSSCEEEEEEC
T ss_pred             HHHhCC----CcCCCCEeeCCCCCCcccCCcCEEEEC
Confidence            988876    21 566788886533    57866543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.11  E-value=7.9e-07  Score=90.03  Aligned_cols=42  Identities=14%  Similarity=0.124  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      +|.+|||||||||++|..|++..  .++|+|||+++.|++.|.+
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHH
T ss_pred             cccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHH
Confidence            57799999999999999998873  3599999999999998654

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.10  E-value=5.6e-06  Score=86.74  Aligned_cols=74  Identities=19%  Similarity=0.072  Sum_probs=61.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc-EEEEEcCCC-------CCCc
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV-VNIMRTLPP-------QQDA  667 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR-I~LI~GDAe-------daPF  667 (687)
                      .+|.+|||++||||.+++.+|...+..++|+++|+++.+++.+++|++.+++    .++ +.++.+|+.       ...|
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl----~~~~v~v~~~Da~~~l~~~~~~~f  126 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI----PEDRYEIHGMEANFFLRKEWGFGF  126 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC----CGGGEEEECSCHHHHHHSCCSSCE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCceEEEEeCCHHHHHHHhhCCCC
Confidence            4688999999999999999998753125899999999999999999999997    455 999999962       1358


Q ss_pred             cEEEEE
Q psy14969        668 SRVNIS  673 (687)
Q Consensus       668 DLILVV  673 (687)
                      |+|++.
T Consensus       127 D~V~lD  132 (392)
T 3axs_A          127 DYVDLD  132 (392)
T ss_dssp             EEEEEC
T ss_pred             cEEEEC
Confidence            988654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.06  E-value=2.3e-06  Score=84.96  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=58.5

Q ss_pred             cCCCC--CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--Ccc--CCCcEEEEEcCCCC---
Q psy14969        594 KLKPG--DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA--HLL--DEGVVNIMRTLPPQ---  664 (687)
Q Consensus       594 dLkpG--~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~--~Va--SsgRI~LI~GDAed---  664 (687)
                      .+.++  .+|||+|||+|..+..+|....   +|++||+++.+++.++.+++....  .+.  ...++.++.+|+..   
T Consensus        83 ~l~~g~~~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~  159 (258)
T 2oyr_A           83 GIKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT  159 (258)
T ss_dssp             TCBTTBCCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST
T ss_pred             cccCCCCCEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHH
Confidence            45667  8999999999999999998843   799999999998888888775431  111  02479999998532   


Q ss_pred             ---CCccEEEEE
Q psy14969        665 ---QDASRVNIS  673 (687)
Q Consensus       665 ---aPFDLILVV  673 (687)
                         .+||+|++.
T Consensus       160 ~~~~~fDvV~lD  171 (258)
T 2oyr_A          160 DITPRPQVVYLD  171 (258)
T ss_dssp             TCSSCCSEEEEC
T ss_pred             hCcccCCEEEEc
Confidence               258988664

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.94  E-value=1.1e-05  Score=80.12  Aligned_cols=73  Identities=18%  Similarity=0.109  Sum_probs=54.5

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-CC-CccEEE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-QQ-DASRVN  671 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-da-PFDLIL  671 (687)
                      .+.++.+|||||||+|.++..+++.. |..+++++|+ +.++.  +++++..+.    ..++.++.+|.. .. .||+|+
T Consensus       181 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~----~~~v~~~~~d~~~~~p~~D~v~  252 (348)
T 3lst_A          181 DFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDV----AGRWKVVEGDFLREVPHADVHV  252 (348)
T ss_dssp             CCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGG----TTSEEEEECCTTTCCCCCSEEE
T ss_pred             CccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCC----CCCeEEEecCCCCCCCCCcEEE
Confidence            46678899999999999999999987 5789999999 45544  333333333    568999999873 22 689887


Q ss_pred             EEe
Q psy14969        672 ISV  674 (687)
Q Consensus       672 VVf  674 (687)
                      ...
T Consensus       253 ~~~  255 (348)
T 3lst_A          253 LKR  255 (348)
T ss_dssp             EES
T ss_pred             Eeh
Confidence            753

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.93  E-value=1.7e-05  Score=72.91  Aligned_cols=59  Identities=14%  Similarity=0.247  Sum_probs=45.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRVN  671 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLIL  671 (687)
                      ++.+|||||||+|.++..+++.       +|+|+++.+++.|+++    +        +.++.++...     ..||+|+
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~----~--------~~~~~~d~~~~~~~~~~fD~v~  107 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR----G--------VFVLKGTAENLPLKDESFDFAL  107 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT----T--------CEEEECBTTBCCSCTTCEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc----C--------CEEEEcccccCCCCCCCeeEEE
Confidence            4889999999999998877532       8999999999999886    2        3455665433     3478887


Q ss_pred             EEe
Q psy14969        672 ISV  674 (687)
Q Consensus       672 VVf  674 (687)
                      ...
T Consensus       108 ~~~  110 (219)
T 1vlm_A          108 MVT  110 (219)
T ss_dssp             EES
T ss_pred             Ecc
Confidence            653

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.91  E-value=9.9e-06  Score=81.89  Aligned_cols=53  Identities=9%  Similarity=0.131  Sum_probs=43.4

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      ...+++.+  .+.++.+|||||||+|+++..+++...   +|+|+|+++.+++.|+++
T Consensus        96 ~~~l~~~~--~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           96 ARDFLATE--LTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHHHHTT--TCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTT
T ss_pred             HHHHHHHh--CCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHc
Confidence            33344433  456788999999999999999998743   899999999999999876

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.91  E-value=2.9e-05  Score=77.35  Aligned_cols=46  Identities=17%  Similarity=0.135  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCCccH----HHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHH
Q psy14969        597 PGDTVLDVGTGSGY----TAACLGYMVRP---HGKVYSLDHMEYLVNFSKENI  642 (687)
Q Consensus       597 pG~RVLDIGCGTGY----LTAaLArLVGP---~GrVtGIDISpeAVE~ARKNL  642 (687)
                      ++.+|||+|||||.    ++..|++..+.   +.+|+|+|+|+.|++.|++++
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            45799999999998    56667766532   358999999999999999864

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.85  E-value=2.9e-05  Score=78.63  Aligned_cols=76  Identities=17%  Similarity=0.199  Sum_probs=55.2

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCc--cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGS--GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGT--GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      .+.+++..|. .-....+|||||||+  +.++..+++...|.++|++||.|+.|++.|++++...+     .+++.++++
T Consensus        65 fl~rav~~l~-~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-----~~~~~~v~a  138 (277)
T 3giw_A           65 WMNRAVAHLA-KEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-----EGRTAYVEA  138 (277)
T ss_dssp             HHHHHHHHHH-HTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-----SSEEEEEEC
T ss_pred             HHHHHHHHhc-cccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-----CCcEEEEEe
Confidence            3444455552 112346899999997  44556666655578999999999999999999887543     257999999


Q ss_pred             CCCC
Q psy14969        661 LPPQ  664 (687)
Q Consensus       661 DAed  664 (687)
                      |...
T Consensus       139 D~~~  142 (277)
T 3giw_A          139 DMLD  142 (277)
T ss_dssp             CTTC
T ss_pred             cccC
Confidence            9765

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.84  E-value=2.2e-06  Score=84.44  Aligned_cols=73  Identities=14%  Similarity=-0.010  Sum_probs=51.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccC-CCcEEEE--EcCCCCC---Cc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD-EGVVNIM--RTLPPQQ---DA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaS-sgRI~LI--~GDAeda---PF  667 (687)
                      .++++.+|||||||+|..+..+++. +   +|+|||+++ |+..|+++    ...... ..++.++  .+|...+   +|
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~-~---~V~gvD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D~~~l~~~~f  141 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR-P---HVMDVRAYT-LGVGGHEV----PRITESYGWNIVKFKSRVDIHTLPVERT  141 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS-T---TEEEEEEEC-CCCSSCCC----CCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc-C---cEEEEECch-hhhhhhhh----hhhhhccCCCeEEEecccCHhHCCCCCC
Confidence            4678999999999999999999887 3   799999998 53322211    110000 1167888  8887654   59


Q ss_pred             cEEEEEec
Q psy14969        668 SRVNISVE  675 (687)
Q Consensus       668 DLILVVfA  675 (687)
                      |+|+..++
T Consensus       142 D~V~sd~~  149 (265)
T 2oxt_A          142 DVIMCDVG  149 (265)
T ss_dssp             SEEEECCC
T ss_pred             cEEEEeCc
Confidence            99988765

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.84  E-value=6.4e-05  Score=74.18  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      .+.+...+++.+   ..+|+.|||++||||..+.+++++..   +++|+|+++.+++.|+++++...
T Consensus       221 p~~l~~~~i~~~---~~~~~~vlD~f~GsGt~~~~a~~~g~---~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          221 PLELAERLVRMF---SFVGDVVLDPFAGTGTTLIAAARWGR---RALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CHHHHHHHHHHH---CCTTCEEEETTCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHHHhc
Confidence            345777777765   46899999999999999999887653   89999999999999999998864

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.83  E-value=1.3e-06  Score=86.52  Aligned_cols=73  Identities=15%  Similarity=0.085  Sum_probs=51.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccC-CCcEEEE--EcCCCC---CCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD-EGVVNIM--RTLPPQ---QDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaS-sgRI~LI--~GDAed---aPF  667 (687)
                      .++++.+|||||||+|..+..+++. +   +|+|||+++ |+..|+++    ...... ..++.++  .+|...   .+|
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~-~---~V~gVD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D~~~l~~~~f  149 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQ-P---NVREVKAYT-LGTSGHEK----PRLVETFGWNLITFKSKVDVTKMEPFQA  149 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTS-T---TEEEEEEEC-CCCTTSCC----CCCCCCTTGGGEEEECSCCGGGCCCCCC
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHc-C---CEEEEECch-hhhhhhhc----hhhhhhcCCCeEEEeccCcHhhCCCCCc
Confidence            4668899999999999999999987 3   799999998 54333221    110000 1167888  788654   459


Q ss_pred             cEEEEEec
Q psy14969        668 SRVNISVE  675 (687)
Q Consensus       668 DLILVVfA  675 (687)
                      |+|+..++
T Consensus       150 D~Vvsd~~  157 (276)
T 2wa2_A          150 DTVLCDIG  157 (276)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99988765

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.74  E-value=2.3e-05  Score=77.45  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhc------CCC-----cEEEEEeCCH--------------HHHHHHHHHHHHcCCCc-
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMV------RPH-----GKVYSLDHME--------------YLVNFSKENIRKNHAHL-  649 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLV------GP~-----GrVtGIDISp--------------eAVE~ARKNLKkaG~~V-  649 (687)
                      +++.+|||||+|+||.++.+++..      .|.     .+|+++|..|              ++.+.|++.++.+...+ 
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            455799999999999999988765      553     5899999886              34446777776632111 


Q ss_pred             ------cC--CCcEEEEEcCCCC----C------CccEEEEE-ecCCCcCcc
Q psy14969        650 ------LD--EGVVNIMRTLPPQ----Q------DASRVNIS-VEPQKSGEI  682 (687)
Q Consensus       650 ------aS--sgRI~LI~GDAed----a------PFDLILVV-fAP~K~gEl  682 (687)
                            ..  ..+++++.||+.+    .      +||+|+.. ++|.+-.|+
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~l  190 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDM  190 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGG
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhh
Confidence                  11  1367899999642    1      79999997 667766553

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.74  E-value=4.1e-05  Score=76.09  Aligned_cols=67  Identities=19%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-C-CccEEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-Q-DASRVNI  672 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-a-PFDLILV  672 (687)
                      +.++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++      .     .++.++.+|... . .||+|+.
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~-----~~v~~~~~d~~~~~p~~D~v~~  252 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG------S-----NNLTYVGGDMFTSIPNADAVLL  252 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------B-----TTEEEEECCTTTCCCCCSEEEE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc------C-----CCcEEEeccccCCCCCccEEEe
Confidence            4567899999999999999999887 5789999999 999987764      1     248899988632 2 3898876


Q ss_pred             Ee
Q psy14969        673 SV  674 (687)
Q Consensus       673 Vf  674 (687)
                      ..
T Consensus       253 ~~  254 (352)
T 1fp2_A          253 KY  254 (352)
T ss_dssp             ES
T ss_pred             eh
Confidence            53

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.74  E-value=8.7e-05  Score=74.74  Aligned_cols=73  Identities=18%  Similarity=0.118  Sum_probs=58.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---CCccEE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---QDASRV  670 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---aPFDLI  670 (687)
                      ++.+..+|||||||+|.++..+++.. |+.+++..|. |.+++.|++++...+     .+++.++.||...   ..+|++
T Consensus       176 ~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~-----~~rv~~~~gD~~~~~~~~~D~~  248 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE-----EEQIDFQEGDFFKDPLPEADLY  248 (353)
T ss_dssp             CGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTSCCCCCSEE
T ss_pred             CcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc-----cCceeeecCccccCCCCCceEE
Confidence            45567899999999999999999997 6889999997 889999998876443     4789999998542   336777


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      ++.
T Consensus       249 ~~~  251 (353)
T 4a6d_A          249 ILA  251 (353)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.74  E-value=6.2e-05  Score=81.20  Aligned_cols=97  Identities=13%  Similarity=0.026  Sum_probs=70.6

Q ss_pred             CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCC-----------------cEEEEEeCCHHHHH
Q psy14969        574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPH-----------------GKVYSLDHMEYLVN  636 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~-----------------GrVtGIDISpeAVE  636 (687)
                      .|+..+.+.++..|++.+  .+.++.+|||.|||||.+...+++.+...                 ..++|+|+++.+++
T Consensus       148 ~G~fyTP~~iv~~mv~~l--~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~  225 (541)
T 2ar0_A          148 AGQYFTPRPLIKTIIHLL--KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR  225 (541)
T ss_dssp             --CCCCCHHHHHHHHHHH--CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred             CCeeeCCHHHHHHHHHHh--ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence            466777778888888887  57778899999999999998888764211                 27999999999999


Q ss_pred             HHHHHHHHcCCCccCCCcEEEEEcCCCC------CCccEEEE
Q psy14969        637 FSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDASRVNI  672 (687)
Q Consensus       637 ~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPFDLILV  672 (687)
                      .|+.++.-.++......++.+..+|...      ..||+|+.
T Consensus       226 lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~  267 (541)
T 2ar0_A          226 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVAT  267 (541)
T ss_dssp             HHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEE
T ss_pred             HHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEE
Confidence            9999998777610000126778888642      35776643

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.73  E-value=3.7e-05  Score=78.56  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      -+...+++.|  .+++++.+||.+||.|..|..|++.   +++|+|+|.++.+++.|++ ++.        .++.+++++
T Consensus         9 VLl~e~le~L--~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~~   74 (285)
T 1wg8_A            9 VLYQEALDLL--AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL--------PGLTVVQGN   74 (285)
T ss_dssp             TTHHHHHHHH--TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC--------TTEEEEESC
T ss_pred             HHHHHHHHhh--CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc--------CCEEEEECC
Confidence            3667777777  6889999999999999999999987   3699999999999999987 533        378999988


Q ss_pred             CCCC----------CccEEEEE
Q psy14969        662 PPQQ----------DASRVNIS  673 (687)
Q Consensus       662 Aeda----------PFDLILVV  673 (687)
                      ...+          .+|.|+..
T Consensus        75 f~~l~~~L~~~g~~~vDgIL~D   96 (285)
T 1wg8_A           75 FRHLKRHLAALGVERVDGILAD   96 (285)
T ss_dssp             GGGHHHHHHHTTCSCEEEEEEE
T ss_pred             cchHHHHHHHcCCCCcCEEEeC
Confidence            6532          47777653

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.68  E-value=8.1e-05  Score=74.71  Aligned_cols=66  Identities=15%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-C-CccEEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-Q-DASRVNI  672 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-a-PFDLILV  672 (687)
                      +.++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++.           .++.++.+|... . .||+|+.
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~~~~~D~v~~  273 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL-----------SGIEHVGGDMFASVPQGDAMIL  273 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTTCCCCEEEEEE
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc-----------CCCEEEeCCcccCCCCCCEEEE
Confidence            5567899999999999999999987 5789999999 9999876641           358899988643 1 2787766


Q ss_pred             E
Q psy14969        673 S  673 (687)
Q Consensus       673 V  673 (687)
                      .
T Consensus       274 ~  274 (372)
T 1fp1_D          274 K  274 (372)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.64  E-value=0.00016  Score=75.11  Aligned_cols=83  Identities=19%  Similarity=0.156  Sum_probs=69.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-ccCCCcEEEEEcCCCC------CC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH-LLDEGVVNIMRTLPPQ------QD  666 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~-VaSsgRI~LI~GDAed------aP  666 (687)
                      ++++|.+|||+++|.|.-|..||++. ..+.|+++|+++.-++..++++++.+.. +....++.+...|+..      ..
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~  223 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT  223 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence            78999999999999999999999886 4679999999999999999999998762 2334578888888653      46


Q ss_pred             ccEEEEEecCCC
Q psy14969        667 ASRVNISVEPQK  678 (687)
Q Consensus       667 FDLILVVfAP~K  678 (687)
                      ||.|++.+ ||-
T Consensus       224 fD~VLlDa-PCS  234 (359)
T 4fzv_A          224 YDRVLVDV-PCT  234 (359)
T ss_dssp             EEEEEEEC-CCC
T ss_pred             CCEEEECC-ccC
Confidence            99997775 664

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.63  E-value=6.5e-05  Score=75.94  Aligned_cols=66  Identities=17%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-C-CccEEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-Q-DASRVNI  672 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-a-PFDLILV  672 (687)
                      +.++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|+++           .++.++.+|... . +.|+|+.
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~~p~~D~v~~  267 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-----------SGVEHLGGDMFDGVPKGDAIFI  267 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTTCCCCCSEEEE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-----------CCCEEEecCCCCCCCCCCEEEE
Confidence            4567899999999999999999987 6789999999 8888776531           478999988643 1 1377655


Q ss_pred             E
Q psy14969        673 S  673 (687)
Q Consensus       673 V  673 (687)
                      .
T Consensus       268 ~  268 (368)
T 3reo_A          268 K  268 (368)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.63  E-value=9.2e-06  Score=81.48  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=51.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeC----CHHHHHHHHHHHHHcCCCccCCCcEEEEEc-CCCC---C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDH----MEYLVNFSKENIRKNHAHLLDEGVVNIMRT-LPPQ---Q  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDI----SpeAVE~ARKNLKkaG~~VaSsgRI~LI~G-DAed---a  665 (687)
                      .++++.+|||||||+|..|..+++. +   +|+|||+    ++.+++.+.  .+..+     ..++.++.+ |...   .
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~-~---~V~gvD~~~~~~~~~~~~~~--~~~~~-----~~~v~~~~~~D~~~l~~~  147 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL-K---NVREVKGLTKGGPGHEEPIP--MSTYG-----WNLVRLQSGVDVFFIPPE  147 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS-T---TEEEEEEECCCSTTSCCCCC--CCSTT-----GGGEEEECSCCTTTSCCC
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc-C---CEEEEeccccCchhHHHHHH--hhhcC-----CCCeEEEeccccccCCcC
Confidence            3677899999999999999999987 3   7999999    554332110  00111     146888988 7653   4


Q ss_pred             CccEEEEEecCC
Q psy14969        666 DASRVNISVEPQ  677 (687)
Q Consensus       666 PFDLILVVfAP~  677 (687)
                      +||+|+..+++.
T Consensus       148 ~fD~V~sd~~~~  159 (305)
T 2p41_A          148 RCDTLLCDIGES  159 (305)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCccc
Confidence            699998877663

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.63  E-value=9.2e-05  Score=74.87  Aligned_cols=66  Identities=18%  Similarity=0.134  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-C-CccEEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-Q-DASRVNI  672 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-a-PFDLILV  672 (687)
                      +.++.+|||||||+|.++..+++.. |+.+++++|+ +.+++.|++           ..++.++.+|... . +-|+|+.
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~p~~D~v~~  265 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFKEVPSGDTILM  265 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCCCCCSEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCCCCCCCCEEEe
Confidence            5567899999999999999999987 6789999999 888876653           1478999998643 1 1277655


Q ss_pred             E
Q psy14969        673 S  673 (687)
Q Consensus       673 V  673 (687)
                      .
T Consensus       266 ~  266 (364)
T 3p9c_A          266 K  266 (364)
T ss_dssp             E
T ss_pred             h
Confidence            4

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.62  E-value=0.0002  Score=77.81  Aligned_cols=96  Identities=14%  Similarity=0.036  Sum_probs=73.1

Q ss_pred             CCcccCcHHHHHHHHHHhhhc--CCCCCeEEEEcCCccHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCc
Q psy14969        574 NCSYLNSPSFIASSLEPALLK--LKPGDTVLDVGTGSGYTAACLGYMVR--PHGKVYSLDHMEYLVNFSKENIRKNHAHL  649 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLked--LkpG~RVLDIGCGTGYLTAaLArLVG--P~GrVtGIDISpeAVE~ARKNLKkaG~~V  649 (687)
                      .|+..+++.++..|++.+...  ..++.+|||.+||||.+...+++.+.  ....++|+|+++.++..|+.|+.-.++  
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi--  273 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV--  273 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC--
Confidence            356667778888888887321  45788999999999999988887752  246899999999999999999988876  


Q ss_pred             cCCCcEEEEEcCCCC--------CCccEEEE
Q psy14969        650 LDEGVVNIMRTLPPQ--------QDASRVNI  672 (687)
Q Consensus       650 aSsgRI~LI~GDAed--------aPFDLILV  672 (687)
                       ...++.+..||.-.        ..||+|+.
T Consensus       274 -~~~~~~I~~gDtL~~d~p~~~~~~fD~Iva  303 (542)
T 3lkd_A          274 -PIENQFLHNADTLDEDWPTQEPTNFDGVLM  303 (542)
T ss_dssp             -CGGGEEEEESCTTTSCSCCSSCCCBSEEEE
T ss_pred             -CcCccceEecceecccccccccccccEEEe
Confidence             11367888888543        34886644

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.61  E-value=0.0001  Score=78.76  Aligned_cols=76  Identities=17%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCC------ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTG------SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN  656 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCG------TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~  656 (687)
                      +...++..+   ..++.+|||||||      +|..+..+++...|.++|+|||+++.|.         ..     ..++.
T Consensus       205 ~Ye~lL~~l---~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~-----~~rI~  267 (419)
T 3sso_A          205 HYDRHFRDY---RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VD-----ELRIR  267 (419)
T ss_dssp             HHHHHHGGG---TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GC-----BTTEE
T ss_pred             HHHHHHHhh---cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hc-----CCCcE
Confidence            444444433   3467899999999      7788888877654688999999999972         11     35899


Q ss_pred             EEEcCCCC-----------CCccEEEEEec
Q psy14969        657 IMRTLPPQ-----------QDASRVNISVE  675 (687)
Q Consensus       657 LI~GDAed-----------aPFDLILVVfA  675 (687)
                      ++.+|+.+           .+||+|+....
T Consensus       268 fv~GDa~dlpf~~~l~~~d~sFDlVisdgs  297 (419)
T 3sso_A          268 TIQGDQNDAEFLDRIARRYGPFDIVIDDGS  297 (419)
T ss_dssp             EEECCTTCHHHHHHHHHHHCCEEEEEECSC
T ss_pred             EEEecccccchhhhhhcccCCccEEEECCc
Confidence            99999865           56998876543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.60  E-value=5.9e-05  Score=79.06  Aligned_cols=81  Identities=11%  Similarity=0.212  Sum_probs=65.9

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +..-+++.|  .+++|+.++|..+|.|..|..+++.++|.|+|+|+|.++.+++.|+ ++    .    ..++.+++++-
T Consensus        45 Ll~Evl~~L--~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~----~~Rv~lv~~nF  113 (347)
T 3tka_A           45 LLDEAVNGL--NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----D----DPRFSIIHGPF  113 (347)
T ss_dssp             TTHHHHHHT--CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----C----CTTEEEEESCG
T ss_pred             cHHHHHHhh--CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----c----CCcEEEEeCCH
Confidence            556677777  6889999999999999999999999888999999999999999884 43    1    36899999874


Q ss_pred             CCC-----------CccEEEEEe
Q psy14969        663 PQQ-----------DASRVNISV  674 (687)
Q Consensus       663 eda-----------PFDLILVVf  674 (687)
                      ..+           ++|.|+...
T Consensus       114 ~~l~~~L~~~g~~~~vDgILfDL  136 (347)
T 3tka_A          114 SALGEYVAERDLIGKIDGILLDL  136 (347)
T ss_dssp             GGHHHHHHHTTCTTCEEEEEEEC
T ss_pred             HHHHHHHHhcCCCCcccEEEECC
Confidence            321           478777654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.57  E-value=9.1e-05  Score=80.26  Aligned_cols=91  Identities=15%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCC--------------CcEEEEEeCCHHHHHHHHH
Q psy14969        575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRP--------------HGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP--------------~GrVtGIDISpeAVE~ARK  640 (687)
                      |+..+.+.++.+|++.+  .+.++ +|||.+||||.+...+++.+..              ...++|+|+++.+++.|+.
T Consensus       225 G~fyTP~~Vv~lmv~ll--~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~  301 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEML--EPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM  301 (544)
T ss_dssp             TTTCCCHHHHHHHHHHH--CCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHHH--hcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence            55666778899999887  45555 9999999999998777654310              3489999999999999999


Q ss_pred             HHHHcCCCccCCCcEEEEEcCCC------CCCccEEEE
Q psy14969        641 NIRKNHAHLLDEGVVNIMRTLPP------QQDASRVNI  672 (687)
Q Consensus       641 NLKkaG~~VaSsgRI~LI~GDAe------daPFDLILV  672 (687)
                      |+.-.++    ..++.+..||.-      ...||+|+.
T Consensus       302 Nl~l~gi----~~~i~i~~gDtL~~~~~~~~~fD~Iv~  335 (544)
T 3khk_A          302 NMVIRGI----DFNFGKKNADSFLDDQHPDLRADFVMT  335 (544)
T ss_dssp             HHHHTTC----CCBCCSSSCCTTTSCSCTTCCEEEEEE
T ss_pred             HHHHhCC----CcccceeccchhcCcccccccccEEEE
Confidence            9998886    333333555532      234776543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.55  E-value=6.3e-05  Score=68.32  Aligned_cols=41  Identities=17%  Similarity=0.119  Sum_probs=31.5

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHH
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEY  633 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpe  633 (687)
                      .+++.+. ...++.+|||||||+|.++..++      .+|+|+|+++.
T Consensus        57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~   97 (215)
T 2zfu_A           57 RIARDLR-QRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL   97 (215)
T ss_dssp             HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS
T ss_pred             HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC
Confidence            3444442 34577899999999999987763      37999999988

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.42  E-value=0.00018  Score=71.66  Aligned_cols=66  Identities=20%  Similarity=0.202  Sum_probs=51.9

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--CCccEEEEE
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--QDASRVNIS  673 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--aPFDLILVV  673 (687)
                      .++.+|||||||+|.++..+++.. |+.+++++|+ +.+++.|++      .     .++.++.+|...  ..||+|+..
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~-----~~v~~~~~d~~~~~~~~D~v~~~  258 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------N-----ENLNFVGGDMFKSIPSADAVLLK  258 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------C-----SSEEEEECCTTTCCCCCSEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------C-----CCcEEEeCccCCCCCCceEEEEc
Confidence            466899999999999999999987 5789999999 788876653      1     248889888643  238988765


Q ss_pred             e
Q psy14969        674 V  674 (687)
Q Consensus       674 f  674 (687)
                      .
T Consensus       259 ~  259 (358)
T 1zg3_A          259 W  259 (358)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.38  E-value=0.00044  Score=67.03  Aligned_cols=61  Identities=25%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      +.+...+++..   ..+|+.|||..||||..+++..++..   +++|+|+++.+++.|++|++..++
T Consensus       199 ~~l~~~~i~~~---~~~~~~vlD~f~GsGtt~~~a~~~gr---~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          199 RDLIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHHhccC
Confidence            45677777765   57899999999999999888777643   899999999999999999987764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.37  E-value=0.00014  Score=73.35  Aligned_cols=63  Identities=13%  Similarity=0.057  Sum_probs=47.2

Q ss_pred             cCCCCCeEEEEcCCc------cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE-EEcCCCCC-
Q psy14969        594 KLKPGDTVLDVGTGS------GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI-MRTLPPQQ-  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGT------GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L-I~GDAeda-  665 (687)
                      .++++.+|||+|||+      |.  ..+++.+++.++|+|+|+++.             +     .++.+ +++|.... 
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-----~~v~~~i~gD~~~~~  119 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-----SDADSTLIGDCATVH  119 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-----CSSSEEEESCGGGCC
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-----CCCEEEEECccccCC
Confidence            567899999999955      66  566777765789999999988             1     14567 88886543 


Q ss_pred             ---CccEEEEEecC
Q psy14969        666 ---DASRVNISVEP  676 (687)
Q Consensus       666 ---PFDLILVVfAP  676 (687)
                         .||+|+...+|
T Consensus       120 ~~~~fD~Vvsn~~~  133 (290)
T 2xyq_A          120 TANKWDLIISDMYD  133 (290)
T ss_dssp             CSSCEEEEEECCCC
T ss_pred             ccCcccEEEEcCCc
Confidence               48999876544

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.35  E-value=0.00049  Score=76.70  Aligned_cols=63  Identities=13%  Similarity=0.082  Sum_probs=50.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC
Q psy14969        598 GDTVLDVGTGSGYTAACLGYM---VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ  665 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArL---VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda  665 (687)
                      +..|||||||+|-++...+++   .+...+|+|||-++ ++..|++..+.+++    .++|+++.|+.++.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~----~dkVtVI~gd~eev  423 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW----GSQVTVVSSDMREW  423 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT----GGGEEEEESCTTTC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC----CCeEEEEeCcceec
Confidence            458999999999995444433   33234799999997 66789999999999    89999999998863

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.34  E-value=0.00069  Score=68.41  Aligned_cols=77  Identities=10%  Similarity=0.116  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHc
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVR----PHGKVYSLDHME--------------------------YLVNFSKENIRKN  645 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVG----P~GrVtGIDISp--------------------------eAVE~ARKNLKka  645 (687)
                      ...++|||+|+..||.++.||..+.    ++++|+++|..+                          ..++.|++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            3456999999999999999988763    367999999642                          1477899999999


Q ss_pred             CCCccCCCcEEEEEcCCC-------CCCccEEEEEec
Q psy14969        646 HAHLLDEGVVNIMRTLPP-------QQDASRVNISVE  675 (687)
Q Consensus       646 G~~VaSsgRI~LI~GDAe-------daPFDLILVVfA  675 (687)
                      ++   ..+++.++.|++.       ..+||+|.+.++
T Consensus       185 gl---~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD  218 (282)
T 2wk1_A          185 DL---LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD  218 (282)
T ss_dssp             TC---CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC
T ss_pred             CC---CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC
Confidence            86   1378999999853       246899988875

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.28  E-value=0.00061  Score=70.81  Aligned_cols=77  Identities=19%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             ccCcHHHHHHHHHHhhhcCCC------CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCcc
Q psy14969        577 YLNSPSFIASSLEPALLKLKP------GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL  650 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLkp------G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~Va  650 (687)
                      .+..|.+...+++.+  .+.+      +..|||||.|.|.+|..|+.... ..+|++||+++.++...++.+ .      
T Consensus        34 FL~d~~i~~~Iv~~~--~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~------  103 (353)
T 1i4w_A           34 YLWNPTVYNKIFDKL--DLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E------  103 (353)
T ss_dssp             CBCCHHHHHHHHHHH--CGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T------
T ss_pred             ccCCHHHHHHHHHhc--cCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c------
Confidence            467889999999988  4543      58999999999999999998743 248999999999998887765 2      


Q ss_pred             CCCcEEEEEcCCCC
Q psy14969        651 DEGVVNIMRTLPPQ  664 (687)
Q Consensus       651 SsgRI~LI~GDAed  664 (687)
                       .+++.++.+|+-.
T Consensus       104 -~~~l~ii~~D~l~  116 (353)
T 1i4w_A          104 -GSPLQILKRDPYD  116 (353)
T ss_dssp             -TSSCEEECSCTTC
T ss_pred             -CCCEEEEECCccc
Confidence             2578999999843

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.27  E-value=0.0014  Score=66.86  Aligned_cols=85  Identities=14%  Similarity=0.136  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      .....+||-||-|.|..+..+++.- +..+|+.||+++.+++.|++.+...........|+.++.+|+.      ...||
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD  159 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD  159 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence            4467899999999999999988764 3469999999999999999998764333345679999999975      35699


Q ss_pred             EEEEE-ecCCCcC
Q psy14969        669 RVNIS-VEPQKSG  680 (687)
Q Consensus       669 LILVV-fAP~K~g  680 (687)
                      +|++. +.|...+
T Consensus       160 vIi~D~~dp~~~~  172 (294)
T 3o4f_A          160 VIISDCTDPIGPG  172 (294)
T ss_dssp             EEEESCCCCCCTT
T ss_pred             EEEEeCCCcCCCc
Confidence            99887 4444433

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.99  E-value=0.00084  Score=77.29  Aligned_cols=71  Identities=10%  Similarity=-0.007  Sum_probs=53.1

Q ss_pred             CCcccCcHHHHHHHHHH----hhhcCCCCCeEEEEcCCccHHHHHHHHhcC--CCcEEEEEeCCHHHHHHH--HHHHHH
Q psy14969        574 NCSYLNSPSFIASSLEP----ALLKLKPGDTVLDVGTGSGYTAACLGYMVR--PHGKVYSLDHMEYLVNFS--KENIRK  644 (687)
Q Consensus       574 ~GqTISaP~VvAlLLEl----LkedLkpG~RVLDIGCGTGYLTAaLArLVG--P~GrVtGIDISpeAVE~A--RKNLKk  644 (687)
                      .|+..+.+.++..|+..    +.....++.+|||.|||||.+...+++.++  ...+++|+|+++.+++.|  +.++..
T Consensus       294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~l  372 (878)
T 3s1s_A          294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLF  372 (878)
T ss_dssp             CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred             CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            45566677788777776    211234688999999999999999998763  135799999999999999  444443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.91  E-value=0.00067  Score=76.99  Aligned_cols=62  Identities=13%  Similarity=0.001  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCccHHHHHHHHh---cC---------CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969        598 GDTVLDVGTGSGYTAACLGYM---VR---------PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ  664 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArL---VG---------P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed  664 (687)
                      +..|||||||+|-++...+++   ++         ...+|+|||.++.++..++.+.. +++    .++|.++.|+.++
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~----~d~VtVI~gd~ee  483 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW----KRRVTIIESDMRS  483 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT----TTCSEEEESCGGG
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC----CCeEEEEeCchhh
Confidence            458999999999997433222   21         23499999999988866665554 777    7889999999764

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.88  E-value=0.00084  Score=63.75  Aligned_cols=52  Identities=15%  Similarity=0.103  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCcc-HHHHHHHHhcCCCcEEEEEeCCHHHHH
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSG-YTAACLGYMVRPHGKVYSLDHMEYLVN  636 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTG-YLTAaLArLVGP~GrVtGIDISpeAVE  636 (687)
                      |...+.+++.....++.+|||||||+| ..|..|++..+  ..|+++|+++.+++
T Consensus        21 m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g--~~V~atDInp~Av~   73 (153)
T 2k4m_A           21 MWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSK--VDLVLTDIKPSHGG   73 (153)
T ss_dssp             HHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSC--CEEEEECSSCSSTT
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCC--CeEEEEECCccccc
Confidence            444555555545667789999999999 59999987443  47999999999887

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.64  E-value=0.0067  Score=65.51  Aligned_cols=82  Identities=11%  Similarity=0.061  Sum_probs=64.4

Q ss_pred             CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCC------------CcEEEEEeCCHHHHHHHHHH
Q psy14969        574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRP------------HGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP------------~GrVtGIDISpeAVE~ARKN  641 (687)
                      .|+.-+++.++.+|++.+  .+.++.+|+|-.||||.+...+.+.+..            ...++|+|+++.++..|+-|
T Consensus       196 ~GqfyTP~~Vv~lmv~l~--~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN  273 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVM--DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN  273 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHH--CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhh--ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence            467778888999999988  6788999999999999998776654321            23699999999999999999


Q ss_pred             HHHcCCCccCCCcEEEEEcCC
Q psy14969        642 IRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       642 LKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +--.+.     ....+..+|.
T Consensus       274 l~lhg~-----~~~~I~~~dt  289 (530)
T 3ufb_A          274 LLLHGL-----EYPRIDPENS  289 (530)
T ss_dssp             HHHHTC-----SCCEEECSCT
T ss_pred             HHhcCC-----cccccccccc
Confidence            888776     2234555554

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.44  E-value=0.008  Score=62.52  Aligned_cols=51  Identities=14%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHH-HhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLG-YMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLA-rLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                      .++++..|+|||++.|+.+..++ +..++.++|+++|.+|...+..+++++.
T Consensus       223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            35789999999999999999988 5554447999999999999999999988

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=95.92  E-value=0.0097  Score=62.98  Aligned_cols=68  Identities=21%  Similarity=0.160  Sum_probs=50.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFD  668 (687)
                      .+++|++|||+||++|.-|..+++..   ++|+|||+.+ |-.    .+..       ..++.++.+|+.     ..++|
T Consensus       208 ~l~~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~-l~~----~l~~-------~~~V~~~~~d~~~~~~~~~~~D  272 (375)
T 4auk_A          208 RLANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGP-MAQ----SLMD-------TGQVTWLREDGFKFRPTRSNIS  272 (375)
T ss_dssp             HSCTTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSC-CCH----HHHT-------TTCEEEECSCTTTCCCCSSCEE
T ss_pred             cCCCCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhh-cCh----hhcc-------CCCeEEEeCccccccCCCCCcC
Confidence            37899999999999999999998874   4999999764 211    1111       346888888854     35688


Q ss_pred             EEEEEecC
Q psy14969        669 RVNISVEP  676 (687)
Q Consensus       669 LILVVfAP  676 (687)
                      .|+...++
T Consensus       273 ~vvsDm~~  280 (375)
T 4auk_A          273 WMVCDMVE  280 (375)
T ss_dssp             EEEECCSS
T ss_pred             EEEEcCCC
Confidence            88777655

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.52  E-value=0.022  Score=60.37  Aligned_cols=77  Identities=16%  Similarity=0.129  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCccCCCcEEEEEcCCC---------
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH---AHLLDEGVVNIMRTLPP---------  663 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG---~~VaSsgRI~LI~GDAe---------  663 (687)
                      .++.+||-||-|.|..+..+.+. . ..+|+.||+++.+++.|++.+....   +......++.++.+|+.         
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence            35689999999999999988875 2 3699999999999999999865432   11222357899999963         


Q ss_pred             CCCccEEEEEe
Q psy14969        664 QQDASRVNISV  674 (687)
Q Consensus       664 daPFDLILVVf  674 (687)
                      ...||+|++..
T Consensus       282 ~~~yDvIIvDl  292 (381)
T 3c6k_A          282 GREFDYVINDL  292 (381)
T ss_dssp             TCCEEEEEEEC
T ss_pred             cCceeEEEECC
Confidence            34699999984

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=94.57  E-value=0.0062  Score=53.86  Aligned_cols=55  Identities=11%  Similarity=-0.007  Sum_probs=41.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--------CC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--------QQ  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--------da  665 (687)
                      .+++|.+|||||||+                 +++|+++.|++.|++++..         ++.+..++..        ..
T Consensus         9 g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~~~~~~   62 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQSAHKES   62 (176)
T ss_dssp             TCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGGCCCSS
T ss_pred             CCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc---------CcEEEEechhcCccccCCCC
Confidence            578999999999996                 1399999999999987532         2566666643        34


Q ss_pred             CccEEEEEe
Q psy14969        666 DASRVNISV  674 (687)
Q Consensus       666 PFDLILVVf  674 (687)
                      .||+|+...
T Consensus        63 ~fD~V~~~~   71 (176)
T 2ld4_A           63 SFDIILSGL   71 (176)
T ss_dssp             CEEEEEECC
T ss_pred             CEeEEEECC
Confidence            489887654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.56  E-value=0.047  Score=54.90  Aligned_cols=60  Identities=22%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      .+...+++..   ..+|+.|||--||||..+.+..++..   +.+|+|+++.+++.|++|+...+.
T Consensus       240 ~l~~~~i~~~---~~~~~~VlDpF~GsGtt~~aa~~~gr---~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          240 KLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             HHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             HHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHhccc
Confidence            4667777665   67899999999999988777666543   899999999999999999987764

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=94.17  E-value=0.012  Score=60.31  Aligned_cols=79  Identities=13%  Similarity=0.011  Sum_probs=51.5

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc-C---CCCCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT-L---PPQQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G-D---AedaPFDL  669 (687)
                      .++++++|||+|||+|..+..+++..+ ...|+|+|+...+...+... ...++     .-+.+..+ +   ....++|+
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~~~g~-----~ii~~~~~~dv~~l~~~~~Dv  159 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-TTLGW-----NLIRFKDKTDVFNMEVIPGDT  159 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-CBTTG-----GGEEEECSCCGGGSCCCCCSE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-ccCCC-----ceEEeeCCcchhhcCCCCcCE
Confidence            578899999999999999999886653 45799999986643222110 00111     11223222 1   23467999


Q ss_pred             EEEEecCCCcC
Q psy14969        670 VNISVEPQKSG  680 (687)
Q Consensus       670 ILVVfAP~K~g  680 (687)
                      |+...||- .|
T Consensus       160 VLSDmApn-sG  169 (282)
T 3gcz_A          160 LLCDIGES-SP  169 (282)
T ss_dssp             EEECCCCC-CS
T ss_pred             EEecCccC-CC
Confidence            99999997 55

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.97  E-value=0.1  Score=52.88  Aligned_cols=61  Identities=23%  Similarity=0.185  Sum_probs=48.3

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCH---HHHHHHHHHHHHcC
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHME---YLVNFSKENIRKNH  646 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISp---eAVE~ARKNLKkaG  646 (687)
                      .+.+...++...   ..+|+.|||-=||+|..+.+..++..   +.+|+|+++   ..++.|++|+...+
T Consensus       228 p~~l~~~~i~~~---~~~~~~vlDpF~GsGtt~~aa~~~~r---~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          228 PAAVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CHHHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHh---CCCCCEEEecCCCCCHHHHHHHHcCC---cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            456777777765   57899999999999988887776643   899999999   99999999998776

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=93.60  E-value=0.019  Score=58.73  Aligned_cols=78  Identities=10%  Similarity=-0.033  Sum_probs=49.0

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC-----CCCCCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL-----PPQQDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD-----AedaPFD  668 (687)
                      .++++.+|||+|||+|..+..+++..+ ...|+|+|+..++...+... ...++      .+..+.++     ....++|
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~~~g~------~ii~~~~~~dv~~l~~~~~D  142 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-QSLGW------NIITFKDKTDIHRLEPVKCD  142 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-CBTTG------GGEEEECSCCTTTSCCCCCS
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-CcCCC------CeEEEeccceehhcCCCCcc
Confidence            467889999999999999998887642 34788888875541100000 00011      22223333     2245799


Q ss_pred             EEEEEecCCCcC
Q psy14969        669 RVNISVEPQKSG  680 (687)
Q Consensus       669 LILVVfAP~K~g  680 (687)
                      +|+...+|- .|
T Consensus       143 lVlsD~apn-sG  153 (277)
T 3evf_A          143 TLLCDIGES-SS  153 (277)
T ss_dssp             EEEECCCCC-CS
T ss_pred             EEEecCccC-cC
Confidence            999999987 54

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=93.44  E-value=0.074  Score=54.38  Aligned_cols=78  Identities=13%  Similarity=0.096  Sum_probs=56.5

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc-C---CCCCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT-L---PPQQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G-D---AedaPFDL  669 (687)
                      .++++++|||+||++|..+..++...+ ..+|+|+|+-..-.+.- ......||     .-+.|..+ |   .+..|+|.
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P-~~~~s~gw-----n~v~fk~gvDv~~~~~~~~Dt  147 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEP-VPMSTYGW-----NIVKLMSGKDVFYLPPEKCDT  147 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCC-CCCCCTTT-----TSEEEECSCCGGGCCCCCCSE
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCc-chhhhcCc-----CceEEEeccceeecCCccccE
Confidence            578999999999999999998888765 34899999876532100 00012233     56889988 6   34588999


Q ss_pred             EEEEecCCC
Q psy14969        670 VNISVEPQK  678 (687)
Q Consensus       670 ILVVfAP~K  678 (687)
                      |+...+|.-
T Consensus       148 llcDIgeSs  156 (267)
T 3p8z_A          148 LLCDIGESS  156 (267)
T ss_dssp             EEECCCCCC
T ss_pred             EEEecCCCC
Confidence            999998843

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=92.64  E-value=0.016  Score=59.28  Aligned_cols=74  Identities=16%  Similarity=0.107  Sum_probs=47.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHh--cCC-CcEEEEEeC--CHHHHHHHHHHHHHcCCCccCCCcEEEEEc-CCC---C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYM--VRP-HGKVYSLDH--MEYLVNFSKENIRKNHAHLLDEGVVNIMRT-LPP---Q  664 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArL--VGP-~GrVtGIDI--SpeAVE~ARKNLKkaG~~VaSsgRI~LI~G-DAe---d  664 (687)
                      -+++|++|||+||+.|.-+..+++.  ++. .|.|+|+|.  .|-...       ..|+     .-+.|..| |..   .
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv-----~~i~~~~G~Df~~~~~  137 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGW-----NIVTMKSGVDVFYKPS  137 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTG-----GGEEEECSCCGGGSCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCc-----eEEEeeccCCccCCCC
Confidence            4789999999999999999999988  431 244555552  111000       0121     22455556 543   3


Q ss_pred             CCccEEEEEecCCCcC
Q psy14969        665 QDASRVNISVEPQKSG  680 (687)
Q Consensus       665 aPFDLILVVfAP~K~g  680 (687)
                      .++|+|+...||. .|
T Consensus       138 ~~~DvVLSDMAPn-SG  152 (269)
T 2px2_A          138 EISDTLLCDIGES-SP  152 (269)
T ss_dssp             CCCSEEEECCCCC-CS
T ss_pred             CCCCEEEeCCCCC-CC
Confidence            4799999999995 54

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=91.48  E-value=0.25  Score=50.28  Aligned_cols=46  Identities=22%  Similarity=0.128  Sum_probs=38.2

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                      .+|||+-||.|.++..+.++...-..|+++|+++.+++..+.|...
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~   48 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH   48 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc
Confidence            5899999999999999987742112699999999999999998654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=90.38  E-value=0.24  Score=51.36  Aligned_cols=79  Identities=14%  Similarity=0.023  Sum_probs=49.8

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc-C---CCCCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT-L---PPQQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G-D---AedaPFDL  669 (687)
                      -++++.+|||+||++|..+..+++..+ ...|+|+|+...+...+.. ....+     ..-+.+..+ +   ....++|+
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~-----~~iv~~~~~~di~~l~~~~~Dl  150 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLG-----WNIVKFKDKSNVFTMPTEPSDT  150 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTT-----GGGEEEECSCCTTTSCCCCCSE
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccC-----CceEEeecCceeeecCCCCcCE
Confidence            467899999999999999999997643 3478999997543110000 00001     112333322 1   12457999


Q ss_pred             EEEEecCCCcC
Q psy14969        670 VNISVEPQKSG  680 (687)
Q Consensus       670 ILVVfAP~K~g  680 (687)
                      |+...+|- .|
T Consensus       151 VlsD~APn-sG  160 (300)
T 3eld_A          151 LLCDIGES-SS  160 (300)
T ss_dssp             EEECCCCC-CS
T ss_pred             EeecCcCC-CC
Confidence            99999998 65

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=90.26  E-value=1.1  Score=44.90  Aligned_cols=46  Identities=20%  Similarity=0.379  Sum_probs=38.9

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-++.|++
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH
Confidence            678999999999987 888888898876 2379999999998888754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=89.33  E-value=0.78  Score=46.53  Aligned_cols=46  Identities=24%  Similarity=0.273  Sum_probs=38.9

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||.+|+|. |.+++.+|+..+ ..+|+++|.+++.++.|++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence            688999999999987 888899998876 2389999999998877653

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=88.20  E-value=0.32  Score=50.97  Aligned_cols=75  Identities=15%  Similarity=0.101  Sum_probs=50.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc-CC---CCCCccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT-LP---PQQDASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G-DA---edaPFDL  669 (687)
                      .++++++|||+||++|..+..++...+ ...|+|+|+-..-.+.= ......++     .-+.+..+ |.   +..++|.
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P-~~~~ql~w-----~lV~~~~~~Dv~~l~~~~~D~  163 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEP-QLVQSYGW-----NIVTMKSGVDVFYRPSECCDT  163 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCC-CCCCBTTG-----GGEEEECSCCTTSSCCCCCSE
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCc-chhhhcCC-----cceEEEeccCHhhCCCCCCCE
Confidence            578899999999999999998887765 34899999876511000 00012333     23677776 43   3366898


Q ss_pred             EEEEec
Q psy14969        670 VNISVE  675 (687)
Q Consensus       670 ILVVfA  675 (687)
                      |++..+
T Consensus       164 ivcDig  169 (321)
T 3lkz_A          164 LLCDIG  169 (321)
T ss_dssp             EEECCC
T ss_pred             EEEECc
Confidence            888765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=87.40  E-value=1.6  Score=43.54  Aligned_cols=46  Identities=22%  Similarity=0.252  Sum_probs=38.1

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-.+.|++
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH
Confidence            688999999999986 888888888875 2389999999988777653

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=87.39  E-value=1.4  Score=43.38  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=38.9

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |..++.+|+..+  ++|+++|.+++-.+.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence            678999999999986 899999999876  599999999998887654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=86.69  E-value=0.95  Score=46.99  Aligned_cols=43  Identities=14%  Similarity=0.011  Sum_probs=36.4

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR  643 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK  643 (687)
                      .+|+|+-||.|.++..+.++..  -.|+++|+++.+++..+.|..
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~   45 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP   45 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT
T ss_pred             CeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC
Confidence            5899999999999999887753  257899999999998888754

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=85.84  E-value=2.1  Score=43.25  Aligned_cols=46  Identities=26%  Similarity=0.299  Sum_probs=38.4

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-++.|++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH
Confidence            688999999999876 888888888875 2379999999998887754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=84.94  E-value=2.5  Score=41.90  Aligned_cols=45  Identities=20%  Similarity=0.240  Sum_probs=37.5

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |..++.+|+..+  ++|+++|.+++-.+.+++
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence            688999999999875 778888888765  479999999988877653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=84.89  E-value=2.6  Score=42.14  Aligned_cols=46  Identities=20%  Similarity=0.259  Sum_probs=37.5

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-.+.|++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH
Confidence            678999999999875 778888888875 2389999999988877653

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=84.07  E-value=2.1  Score=43.27  Aligned_cols=45  Identities=24%  Similarity=0.257  Sum_probs=38.1

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+  ++|++++.+++-++.|++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            688999999999985 788888888765  589999999988887764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=83.84  E-value=1.7  Score=43.04  Aligned_cols=45  Identities=20%  Similarity=0.130  Sum_probs=38.2

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+  ++|+++|.+++-.+.|++
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh
Confidence            688999999999986 888888888875  599999999988877654

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=83.56  E-value=2.1  Score=42.47  Aligned_cols=46  Identities=22%  Similarity=0.410  Sum_probs=38.2

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-++.|++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH
Confidence            688999999999986 888888888875 2379999999988877765

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=83.39  E-value=2.1  Score=42.28  Aligned_cols=46  Identities=24%  Similarity=0.370  Sum_probs=38.6

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-.+.|++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence            578999999999976 888888888874 4699999999998887754

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=82.37  E-value=2.3  Score=42.52  Aligned_cols=46  Identities=22%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-++.|++
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence            678999999999875 777888888765 2289999999988887653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=82.12  E-value=2.4  Score=42.42  Aligned_cols=46  Identities=20%  Similarity=0.199  Sum_probs=37.3

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-++.|++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH
Confidence            678999999999876 777888888765 2289999999988877653

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=82.12  E-value=0.88  Score=49.69  Aligned_cols=86  Identities=13%  Similarity=0.106  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhc------CC-----CcEEEEEeC---CHHHHHHHH-----------HHHHHcCCC---
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMV------RP-----HGKVYSLDH---MEYLVNFSK-----------ENIRKNHAH---  648 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLV------GP-----~GrVtGIDI---SpeAVE~AR-----------KNLKkaG~~---  648 (687)
                      +.-+|||+|.|+||..+.+.+..      .|     ..+++++|.   +.+-+..|-           +-+..+...   
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44599999999999998887653      11     157899998   444444322           223332210   


Q ss_pred             ----ccCCC--cEEEEEcCCC----------CCCccEEEEE-ecCCCcCcc
Q psy14969        649 ----LLDEG--VVNIMRTLPP----------QQDASRVNIS-VEPQKSGEI  682 (687)
Q Consensus       649 ----VaSsg--RI~LI~GDAe----------daPFDLILVV-fAP~K~gEl  682 (687)
                          .+..+  +++++.||+.          ...+|.++.. |+|.|-.|+
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~  188 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDM  188 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTT
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhh
Confidence                11122  6778889862          2468999997 888886664

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=81.76  E-value=3.7  Score=41.38  Aligned_cols=46  Identities=22%  Similarity=0.239  Sum_probs=38.5

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|++.+ ..+|+++|.+++-.+.|++
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH
Confidence            688999999999976 778888888875 2389999999998887765

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=81.74  E-value=2.4  Score=42.42  Aligned_cols=45  Identities=18%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |..++.+|+..+  ++|+++|.+++-++.|++
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHH
Confidence            678999999999876 778888888765  599999999988877654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=81.69  E-value=2.3  Score=42.45  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=37.6

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-.+.|++
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH
Confidence            678999999999875 777888888775 2389999999988887764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=81.54  E-value=3.1  Score=41.29  Aligned_cols=47  Identities=26%  Similarity=0.256  Sum_probs=39.2

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      .+++|++||-+|+|. |.+++.+|+..+ ...|+++|.+++-.+.|++.
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh
Confidence            688999999999976 788888888876 22499999999999888764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=81.52  E-value=4.5  Score=39.65  Aligned_cols=46  Identities=28%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             cCCCCCeEEEEcCCcc-HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGSG-YTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGTG-YLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|++ .+++.+++..+ .++|+++|.+++-.+.+++
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~  206 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK  206 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh
Confidence            6789999999999874 45555565553 4699999999987766554

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=80.93  E-value=2.7  Score=42.79  Aligned_cols=46  Identities=22%  Similarity=0.166  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                      .+.+|||+.||.|.++..+.++..  -.|+++|+++.+++..+.|...
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~   55 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGE   55 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCC
Confidence            356899999999999999887643  3688999999999999988754

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=80.40  E-value=3  Score=43.09  Aligned_cols=157  Identities=17%  Similarity=0.140  Sum_probs=78.7

Q ss_pred             hHHHHHhHHhhchhcCCC-CCCHHHHHHHHhCCCccCCCCCC----------------CCCCCCCccccCCcccCcHHHH
Q psy14969        522 LLALVGMLVALCVSEFDM-YKTKELRDLMIKVDRKDFCPPNR----------------NPYHDYSVMLENCSYLNSPSFI  584 (687)
Q Consensus       522 negLVNlMVvQqLRsnG~-IdS~EV~qAMraVPReaFVP~gy----------------qAYsD~pLPIG~GqTISaP~Vv  584 (687)
                      +++|.++..+.++..++. +++.+...+.+..-|..|-|...                ..|.|.=.+..+|+.--+-++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~reIi~T~DGS~Tl~s~~f~e~YhS~~~GAl~Es~hVF   82 (308)
T 3vyw_A            3 REEYLKNYLESYLRKKEVSLTEEEFNVILREFLRFAYNPEESGQEIADTADGSKTLIHKTYGEPYHSQTAGAIRESLYKF   82 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCCCTTCCCEEEEECTTSCEEEEETTTTEESSCTTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHhcCcccccCeeEECCCCCcCcccCccCCccCCCCCcHHHHHHHHH
Confidence            467777777777776665 44445555655554544444321                1122211111123211111111


Q ss_pred             ---HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHH---hcCCCcEE--EEEeCCH--------H-HHHHHHHHHHHcCC
Q psy14969        585 ---ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGY---MVRPHGKV--YSLDHME--------Y-LVNFSKENIRKNHA  647 (687)
Q Consensus       585 ---AlLLElLkedLkpG~RVLDIGCGTGYLTAaLAr---LVGP~GrV--tGIDISp--------e-AVE~ARKNLKkaG~  647 (687)
                         ..+.+..  .-++.-+|||+|-|||+.+++..+   ..+|..++  +++|..+        . ..+.+..-+.....
T Consensus        83 i~~~~L~~r~--~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~  160 (308)
T 3vyw_A           83 VRPSRILEKA--KERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPE  160 (308)
T ss_dssp             HHHHTHHHHH--HHCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSE
T ss_pred             hccCCchHHh--cCCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcc
Confidence               1111222  112334899999999998755432   23455554  6666421        1 12222222222221


Q ss_pred             CccCCC--cEEEEEcCCC-------CCCccEEEEE-ecCCCcCcc
Q psy14969        648 HLLDEG--VVNIMRTLPP-------QQDASRVNIS-VEPQKSGEI  682 (687)
Q Consensus       648 ~VaSsg--RI~LI~GDAe-------daPFDLILVV-fAP~K~gEl  682 (687)
                        ...+  .+.+..||+.       ...+|+|+.. |+|.|-.|+
T Consensus       161 --~~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeL  203 (308)
T 3vyw_A          161 --YEGERLSLKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPEL  203 (308)
T ss_dssp             --EECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGG
T ss_pred             --ccCCcEEEEEEechHHHHHhhhcccceeEEEeCCCCcccCccc
Confidence              1233  3566778853       3468999998 899998775

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=80.40  E-value=4.4  Score=41.45  Aligned_cols=47  Identities=13%  Similarity=0.070  Sum_probs=37.6

Q ss_pred             CCeEEEEcCCccHHHHHHHHhcCCCcEE-EEEeCCHHHHHHHHHHHHH
Q psy14969        598 GDTVLDVGTGSGYTAACLGYMVRPHGKV-YSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArLVGP~GrV-tGIDISpeAVE~ARKNLKk  644 (687)
                      ..+|+|+-||.|.++..+.++.-+.-.| .++|+++.+++..+.|...
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~   57 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE   57 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC
Confidence            4589999999999999988764111256 7999999999998888754

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=80.25  E-value=3  Score=43.75  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=18.4

Q ss_pred             CCeEEEEcCCccHHHHHHHHh
Q psy14969        598 GDTVLDVGTGSGYTAACLGYM  618 (687)
Q Consensus       598 G~RVLDIGCGTGYLTAaLArL  618 (687)
                      +.+|+|+|||+|..|..+...
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~   73 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDF   73 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHH
Confidence            579999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	687
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	5e-16
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	6e-15
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	5e-10
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	4e-09
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	5e-08
d1vbfa_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-06
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-06
d1jg1a_	215	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	5e-06
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	1e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-05
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	2e-05
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	5e-05
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	6e-05
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	1e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	1e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	2e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	4e-04
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.002
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.003
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	0.004

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 5e-16
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
           KT ++ ++M+  DR  +   N  PY D    +   + +++P   A +LE    +L  G  
Sbjct: 22  KTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAK 79

Query: 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
            LDVG+GSG   AC   MV   GKV  +DH++ LV+ S  N+RK+   LL  G V ++
Sbjct: 80  ALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 137

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 72.2 bits (176), Expect = 6e-15
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 7/124 (5%)

Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDT 600
            +  +   M + DRK + P  RNPY D    +     +++P   A +LE     LKPG  
Sbjct: 26  ASDAVAQAMKETDRKHYSP--RNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGAR 83

Query: 601 VLDVGTGSGYTAACLGYMVRPHG-----KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
           +LDVG+GSGY  AC    ++  G     ++  ++H   LV  SK N+  +   +LD G +
Sbjct: 84  ILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 143

Query: 656 NIMR 659
            I+ 
Sbjct: 144 LIVE 147

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 5e-10
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           +++ + PGDTVL+ G+GSG  +  L   V   G+V S +  +   + +K+N + 
Sbjct: 92  SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
               L+PG  +L+VG GSG  ++ + Y +   G +  ++  E  +  + +N+ + +
Sbjct: 79  MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 134

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
               + PG  VL+ G GSG     L   V P G+V S +          E+ R+N +   
Sbjct: 90  HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA----EHARRNVSGCY 145

Query: 651 DEGVVNI 657
            +   N 
Sbjct: 146 GQPPDNW 152

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 541 KTKELRDLMIKVDRKDFCPPNR--NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           KT+EL +   KVDR  F P N     Y      L     +N+ +          L L  G
Sbjct: 12  KTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELDLHKG 71

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG 653
             VL++GTG GY  A +  +V    KV S++  E + N++ + +   +   L  G
Sbjct: 72  QKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILG 123

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
            L +    D  +DVG G+G        +     +VY++D     ++ ++ N++++ 
Sbjct: 27  CLAEPGKNDVAVDVGCGTGGVT---LELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
           ++KE+    +K  R         +  + D  + +     +++P  +A  LE  +  LKPG
Sbjct: 22  RSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLE--IANLKPG 79

Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
             +L+VGTGSG+ AA +  +      VY+++ +  LV F+K N+ +    
Sbjct: 80  MNILEVGTGSGWNAALISEI--VKTDVYTIERIPELVEFAKRNLERAGVK 127

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
           L +K GD ++D G GSG   A L   V   GKV++ +  E     ++ N+ K    
Sbjct: 99  LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI 154

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639
            P+F++   +    +LK GDT +D+G+G G                +  + M+   + + 
Sbjct: 201 LPNFLSDVYQ--QCQLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTI 257

Query: 640 ENIRKNHAHLLDEGVVNIMRTLPPQQD 666
               +        G+         ++ 
Sbjct: 258 LQYEELKKRCKLYGMRLNNVEFSLKKS 284

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 14/74 (18%), Positives = 29/74 (39%)

Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE 652
             +KPG +VL +G  SG TA+ +  +V   GK++ ++    ++      + +    +   
Sbjct: 69  FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPIL 128

Query: 653 GVVNIMRTLPPQQD 666
           G             
Sbjct: 129 GDATKPEEYRALVP 142

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG-KVYSLDHMEYLVNFSKENIRKNHAHL 649
            +L++KPG  +LD+G+GSG          R HG     +D        +K    +     
Sbjct: 27  RVLRMKPGTRILDLGSGSGEMLC---TWARDHGITGTGIDMSSLFTAQAKRRAEELGVSE 83

Query: 650 LDEGVVNIMRTLPPQQDASRV 670
               + N        +     
Sbjct: 84  RVHFIHNDAAGYVANEKCDVA 104

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 42.4 bits (99), Expect = 6e-05
 Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 582 SFIASSLEPAL--LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639
           S +A+++   L  + +K    +L +G  +G T + +  +    G VY++++   ++    
Sbjct: 57  SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELL 115

Query: 640 ENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQKS 679
           +   +    +   G  N  +      +   V      Q +
Sbjct: 116 DACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPN 155

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
           A  L+   LKL+  + VL +G  SG T + L  +V   G +Y++++         E +R+
Sbjct: 44  AMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRE 102

Query: 645 NHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQ 677
            +  +      +         +   +      Q
Sbjct: 103 RNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ 135

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
           +  LK  + VLDV TG G+ A           KV + D  E ++  ++  I  N   
Sbjct: 10  IAALKGNEEVLDVATGGGHVAN---AFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ 63

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 18/77 (23%), Positives = 29/77 (37%)

Query: 572 LENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHM 631
           L+N   L       S L   + K+     ++D G G GY    L  ++    K   +D  
Sbjct: 2   LKNTRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSG 61

Query: 632 EYLVNFSKENIRKNHAH 648
           E L+  ++E  R     
Sbjct: 62  ETLLAEARELFRLLPYD 78

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
             + +    VLD+G G+G+TA           +   +D  + +V  +    ++    
Sbjct: 11  TAECRAEHRVLDIGAGAGHTAL---AFSPYVQECIGVDATKEMVEVASSFAQEKGVE 64

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 2/78 (2%)

Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654
            K GD+VLD+G G G             G+ Y +D  E  +N ++   R           
Sbjct: 22  TKRGDSVLDLGCGKGGDLLKY--ERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFR 79

Query: 655 VNIMRTLPPQQDASRVNI 672
                            I
Sbjct: 80  AQDSYGRHMDLGKEFDVI 97

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.003
 Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD 651
            +K+   D  +D+G+G G     +          Y ++  +    +++   R+    +  
Sbjct: 146 EIKMTDDDLFVDLGSGVGQVVLQV-AAATNCKHHYGVEKADIPAKYAETMDREFRKWMKW 204

Query: 652 EGVVN 656
            G  +
Sbjct: 205 YGKKH 209

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 3/56 (5%)

Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
           L + PG  VL    G     +   ++      V   +  E  V        +    
Sbjct: 16  LNVVPGARVLVPLCGKSQDMS---WLSGQGYHVVGAELSEAAVERYFTERGEQPHI 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	687
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.95
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.95
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.92
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.87
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.85
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.64
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.34
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.31
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.3
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.29
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.28
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.27
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.27
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.26
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.15
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.14
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.12
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.12
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.11
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.11
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.1
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.09
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.99
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.98
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.97
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.97
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.96
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.96
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.93
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.91
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.9
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.88
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.88
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.87
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.86
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.83
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.83
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.82
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.82
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.79
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.77
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.73
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.72
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.7
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.68
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.67
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.67
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.66
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.65
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.62
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.62
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.58
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.58
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.57
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.54
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.53
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.52
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.49
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.48
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.47
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.46
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.41
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.35
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.34
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.3
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.28
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.27
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.24
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.21
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.2
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.17
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.16
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.13
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.93
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.78
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.71
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.65
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.62
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.61
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.45
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.26
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.13
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.99
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.97
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.95
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.94
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.93
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.75
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.73
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.67
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.63
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.61
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.37
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.25
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.0
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	95.87
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.68
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	95.68
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	95.64
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.57
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.21
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.17
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.08
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.79
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	94.75
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.74
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.3
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.29
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.85
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.58
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	90.69
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.55
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.31
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.22
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.4
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.71
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	86.8
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.72
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	86.07
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.34
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.52
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	84.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.57
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	81.28
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	80.96

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.9e-28  Score=234.65  Aligned_cols=162  Identities=25%  Similarity=0.417  Sum_probs=141.1

Q ss_pred             ccCccCCC-chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCCCCCCCCccccCCcccCcHHHHHHHHHHh
Q psy14969        513 KMKNTAVQ-PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPA  591 (687)
Q Consensus       513 ~Mswrcsg-AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyqAYsD~pLPIG~GqTISaP~VvAlLLElL  591 (687)
                      .|+|++++ +|++||     ++|+.+|++++++|++||++|||+.|+|.  .+|.|.++|++.|++|++|+++++++++|
T Consensus         2 ~~~~~s~~~~~~~lv-----~~l~~~gvi~~~~v~~a~~~vpRe~Fvp~--~aY~D~~lpi~~~~~is~P~~~a~~l~~L   74 (223)
T d1r18a_           2 HMAWRSVGANNEDLI-----RQLKDHGVIASDAVAQAMKETDRKHYSPR--NPYMDAPQPIGGGVTISAPHMHAFALEYL   74 (223)
T ss_dssp             CCCCCCBCSSHHHHH-----HHHHHTTSCCCHHHHHHHHTSCGGGTCSS--CTTBSSCEEEETTEEECCHHHHHHHHHHT
T ss_pred             ccccccCCcCHHHHH-----HHHHHcCCCCCHHHHHHHHhCCHHHcCCc--cccCCCCccccCCceeehhhhHHHHHHHH
Confidence            49999999 788877     78999998899999999999999999997  69999999999999999999999999998


Q ss_pred             hhcCCCCCeEEEEcCCccHHHHHHHHhcCCCc-----EEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---
Q psy14969        592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG-----KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---  663 (687)
Q Consensus       592 kedLkpG~RVLDIGCGTGYLTAaLArLVGP~G-----rVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---  663 (687)
                      ..++++|++||||||||||+|+.||+++++.|     +|+++|+++++++.|++++...++......++.++.+|+.   
T Consensus        75 ~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~  154 (223)
T d1r18a_          75 RDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY  154 (223)
T ss_dssp             TTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred             hhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc
Confidence            66789999999999999999999999986544     8999999999999999998765432122357889988853   


Q ss_pred             --CCCccEEEEEecCCCcCc
Q psy14969        664 --QQDASRVNISVEPQKSGE  681 (687)
Q Consensus       664 --daPFDLILVVfAP~K~gE  681 (687)
                        ..|||+|++.++.....+
T Consensus       155 ~~~~~fD~Iiv~~a~~~~p~  174 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAPDTPT  174 (223)
T ss_dssp             GGGCSEEEEEECSCBSSCCH
T ss_pred             ccccceeeEEEEeechhchH
Confidence              578999999988765443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.6e-28  Score=229.66  Aligned_cols=157  Identities=27%  Similarity=0.393  Sum_probs=142.1

Q ss_pred             ccCCC-chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCCCCCCCCccccCCcccCcHHHHHHHHHHhhhc
Q psy14969        516 NTAVQ-PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLK  594 (687)
Q Consensus       516 wrcsg-AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyqAYsD~pLPIG~GqTISaP~VvAlLLElLked  594 (687)
                      |++++ +|++||     ++++.+|.|++++|.+||+.|||+.|+|.  .+|.|.+++++.+++|+.|+++++++++|...
T Consensus         1 ~~s~~~~~~~mv-----~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~--~aY~D~~l~i~~~~~is~P~~~a~~le~L~~~   73 (224)
T d1i1na_           1 WKSGGASHSELI-----HNLRKNGIIKTDKVFEVMLATDRSHYAKC--NPYMDSPQSIGFQATISAPHMHAYALELLFDQ   73 (224)
T ss_dssp             CCCCCSSHHHHH-----HHHHHTTSCCSHHHHHHHHTSCGGGTCSS--CTTSSSCEEEETTEEECCHHHHHHHHHHTTTT
T ss_pred             CCCCcccHHHHH-----HHHHHcCCCCCHHHHHHHHhCCHHHcCCc--ccCCCCCccccchhhhhhhHHHHHHHHHHhhc
Confidence            88998 788888     78889999999999999999999999997  68999999999999999999999999998767


Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDL  669 (687)
                      +++|++||||||||||.|+.||+++++.++|+|+|+++++++.|++++++.++......++.+..||+.     ..+||+
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~  153 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  153 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence            899999999999999999999999988999999999999999999999998875455578888888853     578999


Q ss_pred             EEEEecCCCc
Q psy14969        670 VNISVEPQKS  679 (687)
Q Consensus       670 ILVVfAP~K~  679 (687)
                      |++.+++...
T Consensus       154 I~~~~~~~~i  163 (224)
T d1i1na_         154 IHVGAAAPVV  163 (224)
T ss_dssp             EEECSBBSSC
T ss_pred             hhhhcchhhc
Confidence            9998776554

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.92  E-value=3.7e-25  Score=211.62  Aligned_cols=140  Identities=24%  Similarity=0.361  Sum_probs=128.9

Q ss_pred             hchhcCCCCCCHHHHHHHHhCCCccCCCCCC--CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCcc
Q psy14969        532 LCVSEFDMYKTKELRDLMIKVDRKDFCPPNR--NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSG  609 (687)
Q Consensus       532 QqLRsnG~IdS~EV~qAMraVPReaFVP~gy--qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTG  609 (687)
                      ++|+.+|+|++++|++||+.|||+.|+|..+  .||.|.+++++.|++|+.|+++++++++|  ++++|++|||||||||
T Consensus        13 ~~L~~~g~i~~~~v~~A~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L--~l~~g~~VLeIGsGsG   90 (215)
T d1jg1a_          13 EMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIA--NLKPGMNILEVGTGSG   90 (215)
T ss_dssp             HHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHH--TCCTTCCEEEECCTTS
T ss_pred             HHHHHcCCCCCHHHHHHHHcCCchhcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhh--ccCccceEEEecCCCC
Confidence            7899999999999999999999999999984  49999999999999999999999999999  8999999999999999


Q ss_pred             HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-----CCCCccEEEEEecCCCcC
Q psy14969        610 YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-----PQQDASRVNISVEPQKSG  680 (687)
Q Consensus       610 YLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-----edaPFDLILVVfAP~K~g  680 (687)
                      |.|+.||++++  ++|+++|+++.+++.|++++++.++     .++.++.||.     ...|||+|++.++.....
T Consensus        91 Y~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~-----~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip  159 (215)
T d1jg1a_          91 WNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV-----KNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIP  159 (215)
T ss_dssp             HHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGGGCCGGGCCEEEEEECSBBSSCC
T ss_pred             hhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCC-----ceeEEEECccccCCcccCcceeEEeecccccCC
Confidence            99999999985  5799999999999999999999987     6899998884     368899999987766543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=4.3e-22  Score=187.09  Aligned_cols=143  Identities=20%  Similarity=0.292  Sum_probs=124.2

Q ss_pred             hHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCC---CCCCCCccc----cCCcccCcHHHHHHHHHHhhhc
Q psy14969        522 LLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRN---PYHDYSVML----ENCSYLNSPSFIASSLEPALLK  594 (687)
Q Consensus       522 negLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyq---AYsD~pLPI----G~GqTISaP~VvAlLLElLked  594 (687)
                      ++.|+     ..|++.| | +++|.+||+.|||+.|+|..+.   +|.|.++++    ..+++++.|++++++++.+  .
T Consensus         2 ~~~l~-----~~l~~~g-i-~~~v~~a~~~v~Re~Fv~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l--~   72 (213)
T d1dl5a1           2 REKLF-----WILKKYG-V-SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWV--G   72 (213)
T ss_dssp             HHHHH-----HHHHHTT-C-CHHHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHT--T
T ss_pred             HHHHH-----HHHHHcC-C-CHHHHHHHHcCCHHHcCCchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhh--h
Confidence            35566     8899999 5 5699999999999999998754   677877665    4568899999999999998  7


Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDL  669 (687)
                      +++|++||||||||||.|+.||+.+++.++|+++|+++.+++.|+++++..++     .++.++.+|+.     ..+||+
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-----~n~~~~~~d~~~~~~~~~~fD~  147 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-----ENVIFVCGDGYYGVPEFSPYDV  147 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGGGCCGGGCCEEE
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-----cccccccCchHHccccccchhh
Confidence            99999999999999999999999998889999999999999999999999886     57888888864     367999


Q ss_pred             EEEEecCCC
Q psy14969        670 VNISVEPQK  678 (687)
Q Consensus       670 ILVVfAP~K  678 (687)
                      |++.++...
T Consensus       148 I~~~~~~~~  156 (213)
T d1dl5a1         148 IFVTVGVDE  156 (213)
T ss_dssp             EEECSBBSC
T ss_pred             hhhhccHHH
Confidence            998876544

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.85  E-value=1.6e-21  Score=187.20  Aligned_cols=128  Identities=24%  Similarity=0.304  Sum_probs=113.0

Q ss_pred             CCCHHHHHHHHhCCCccCCCCCC--CCCCCC--CccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHH
Q psy14969        540 YKTKELRDLMIKVDRKDFCPPNR--NPYHDY--SVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACL  615 (687)
Q Consensus       540 IdS~EV~qAMraVPReaFVP~gy--qAYsD~--pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaL  615 (687)
                      |++++|++||+.|||+.|+|..+  .+|.|.  +++++.|++++.|++++++++.|  .+++|++||||||||||+|+.|
T Consensus        11 I~~~~v~~A~~~VpRe~Fvp~~~~~~AY~d~~~~l~i~~g~~~~~p~~~a~ml~~L--~l~~g~~VLdIG~GsGy~ta~L   88 (224)
T d1vbfa_          11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDEL--DLHKGQKVLEIGTGIGYYTALI   88 (224)
T ss_dssp             CCCHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHH
T ss_pred             CCCHHHHHHHHcCcHHHcCChhhhhcCccCcccCcccCCCCceehhhhHHHHHHHh--hhcccceEEEecCCCCHHHHHH
Confidence            78999999999999999999884  378765  68899999999999999999998  7999999999999999999999


Q ss_pred             HHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEecCCCc
Q psy14969        616 GYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVEPQKS  679 (687)
Q Consensus       616 ArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfAP~K~  679 (687)
                      |++++   +|+++|+++.+++.|++++...       .++.++.+|..     ..|||+|++.++....
T Consensus        89 a~l~~---~V~aiE~~~~~~~~A~~~~~~~-------~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~i  147 (224)
T d1vbfa_          89 AEIVD---KVVSVEINEKMYNYASKLLSYY-------NNIKLILGDGTLGYEEEKPYDRVVVWATAPTL  147 (224)
T ss_dssp             HHHSS---EEEEEESCHHHHHHHHHHHTTC-------SSEEEEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             HHHhc---ccccccccHHHHHHHHHHHhcc-------cccccccCchhhcchhhhhHHHHHhhcchhhh
Confidence            99975   8999999999999999987653       47888888843     5889999988766543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=6.4e-18  Score=161.87  Aligned_cols=152  Identities=16%  Similarity=0.165  Sum_probs=114.2

Q ss_pred             cccccchhhhcccccccchhhcccCccCCC------chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCCC
Q psy14969        491 NQHCDFTLRNTISFSSHFIFSRKMKNTAVQ------PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNP  564 (687)
Q Consensus       491 ~~~CPlc~~~L~s~sk~LLLSr~Mswrcsg------AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyqA  564 (687)
                      ++.||+|+.+|....        -+|.|.+      ++++|+|+|+.+..++..+..+.++..+     |+.|+..++. 
T Consensus         1 sf~CP~C~~~L~~~~--------~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~~~~~~~a-----r~~~l~~g~~-   66 (268)
T d1p91a_           1 SFSCPLCHQPLSREK--------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMMQA-----RRAFLDAGHY-   66 (268)
T ss_dssp             CBBCTTTCCBCEEET--------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSSHHHHHH-----HHHHHTTTTT-
T ss_pred             CccCCCCChhhhcCC--------CeEECCCCCccccccCceEecccccccccCCCCCCHHHHHH-----HHHHHHcCch-
Confidence            478999999987665        4577765      4579999999888888888899988888     7766654211 


Q ss_pred             CCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        565 YHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       565 YsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                       ..           ..-.+.+.+.+.+   ..++.+|||||||+|+++..|++.. |+.+|+|+|+++.|++.|+++.  
T Consensus        67 -~~-----------l~~~~~~~l~~~~---~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~--  128 (268)
T d1p91a_          67 -QP-----------LRDAIVAQLRERL---DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY--  128 (268)
T ss_dssp             -HH-----------HHHHHHHHHHHHS---CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC--
T ss_pred             -HH-----------HHHHHHHHHHHhc---CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc--
Confidence             00           0111333334333   5678899999999999999999987 5789999999999999998763  


Q ss_pred             cCCCccCCCcEEEEEcCCCCCC-----ccEEEEEecCCCcCcc
Q psy14969        645 NHAHLLDEGVVNIMRTLPPQQD-----ASRVNISVEPQKSGEI  682 (687)
Q Consensus       645 aG~~VaSsgRI~LI~GDAedaP-----FDLILVVfAP~K~gEl  682 (687)
                              .++.++.+|+..+|     ||.|+..++|....|+
T Consensus       129 --------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~e~  163 (268)
T d1p91a_         129 --------PQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAEEL  163 (268)
T ss_dssp             --------TTSEEEECCTTSCSBCTTCEEEEEEESCCCCHHHH
T ss_pred             --------ccccceeeehhhccCCCCCEEEEeecCCHHHHHHH
Confidence                    24677888876544     8999999888776654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.34  E-value=2.3e-12  Score=118.25  Aligned_cols=85  Identities=15%  Similarity=0.209  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      ++...++++.+  ++++|++|||||||||.++..|++.++   +|+|||+|+.|++.|++++...++     .++.++++
T Consensus         2 ~~~~~~l~~~~--~~~~~~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~-----~~~~~~~~   71 (234)
T d1xxla_           2 HHSLGLMIKTA--ECRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGV-----ENVRFQQG   71 (234)
T ss_dssp             HHHHHHHHHHH--TCCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTC-----CSEEEEEC
T ss_pred             chHHHHHHHHh--CCCCCCEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccc-----cccccccc
Confidence            44566777777  899999999999999999999998864   899999999999999999999886     57999999


Q ss_pred             CCCCCC-----ccEEEEEec
Q psy14969        661 LPPQQD-----ASRVNISVE  675 (687)
Q Consensus       661 DAedaP-----FDLILVVfA  675 (687)
                      ++...|     ||+|++...
T Consensus        72 d~~~~~~~~~~fD~v~~~~~   91 (234)
T d1xxla_          72 TAESLPFPDDSFDIITCRYA   91 (234)
T ss_dssp             BTTBCCSCTTCEEEEEEESC
T ss_pred             ccccccccccccceeeeece
Confidence            976544     798887654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.31  E-value=6.3e-12  Score=113.52  Aligned_cols=87  Identities=21%  Similarity=0.246  Sum_probs=75.6

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ...++.+.++..+  .+.+|++|||||||+|+++..+|+..+   +|+|+|+++.+++.|++|++++++    ..+++++
T Consensus        17 t~~eir~~il~~l--~~~~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl----~~~v~~~   87 (186)
T d1l3ia_          17 TAMEVRCLIMCLA--EPGKNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGL----GDNVTLM   87 (186)
T ss_dssp             CCHHHHHHHHHHH--CCCTTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTC----CTTEEEE
T ss_pred             ChHHHHHHHHHhc--CCCCCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCC----CcceEEE
Confidence            4667888888887  799999999999999999999987653   999999999999999999999998    6799999


Q ss_pred             EcCCC-----CCCccEEEEEe
Q psy14969        659 RTLPP-----QQDASRVNISV  674 (687)
Q Consensus       659 ~GDAe-----daPFDLILVVf  674 (687)
                      .|++.     ...||.|++..
T Consensus        88 ~gda~~~~~~~~~~D~v~~~~  108 (186)
T d1l3ia_          88 EGDAPEALCKIPDIDIAVVGG  108 (186)
T ss_dssp             ESCHHHHHTTSCCEEEEEESC
T ss_pred             ECchhhcccccCCcCEEEEeC
Confidence            99954     35688887653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=8.2e-12  Score=115.59  Aligned_cols=87  Identities=15%  Similarity=0.130  Sum_probs=75.0

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR  659 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~  659 (687)
                      .|...+.+.+.+  .+.+|++|||||||+|+++..+++..+  ++|+|||+++.|++.|+++.+..++    .++++++.
T Consensus        18 ~~~~~~~l~~~~--~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl----~~~v~~~~   89 (245)
T d1nkva_          18 TEEKYATLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGV----SERVHFIH   89 (245)
T ss_dssp             CHHHHHHHHHHT--CCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEE
T ss_pred             CHHHHHHHHHHc--CCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhc----cccchhhh
Confidence            455677777777  799999999999999999999998753  6999999999999999999999998    77899999


Q ss_pred             cCCCC----CCccEEEEEe
Q psy14969        660 TLPPQ----QDASRVNISV  674 (687)
Q Consensus       660 GDAed----aPFDLILVVf  674 (687)
                      +|+..    .+||.|+...
T Consensus        90 ~d~~~~~~~~~fD~v~~~~  108 (245)
T d1nkva_          90 NDAAGYVANEKCDVAACVG  108 (245)
T ss_dssp             SCCTTCCCSSCEEEEEEES
T ss_pred             hHHhhccccCceeEEEEEe
Confidence            99754    5689887653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.29  E-value=2.5e-12  Score=124.77  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=70.2

Q ss_pred             ccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCc
Q psy14969        570 VMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL  649 (687)
Q Consensus       570 LPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~V  649 (687)
                      ..+.++..|..|.-.+.++..+  +++||++|||+|||||++|..||+.++|.|+|+++|+++++++.|++|+++.+.  
T Consensus        60 ~~~~r~~qiiypkD~~~Ii~~l--~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~--  135 (250)
T d1yb2a1          60 RVIRRNTQIISEIDASYIIMRC--GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD--  135 (250)
T ss_dssp             HHC------------------C--CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC--
T ss_pred             hhCCCCCcccCHHHHHHHHHHc--CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC--
Confidence            3445667778888888998887  899999999999999999999999988899999999999999999999998764  


Q ss_pred             cCCCcEEEEEcCCCC----CCccEEEEE
Q psy14969        650 LDEGVVNIMRTLPPQ----QDASRVNIS  673 (687)
Q Consensus       650 aSsgRI~LI~GDAed----aPFDLILVV  673 (687)
                        ..++.+..+|..+    .+||.|+..
T Consensus       136 --~~nv~~~~~Di~~~~~~~~fD~V~ld  161 (250)
T d1yb2a1         136 --IGNVRTSRSDIADFISDQMYDAVIAD  161 (250)
T ss_dssp             --CTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             --CCceEEEEeeeecccccceeeeeeec
Confidence              5789999998653    458888764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.28  E-value=9.7e-12  Score=112.08  Aligned_cols=82  Identities=27%  Similarity=0.321  Sum_probs=69.6

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      .+.+++.+  .++++++|||||||+|.++..+++...   +|+|+|+++.|++.|+++++..+.     .++.+++++..
T Consensus         4 ~~~ll~~~--~l~~~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~-----~~i~~~~~d~~   73 (231)
T d1vl5a_           4 LAKLMQIA--ALKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGH-----QQVEYVQGDAE   73 (231)
T ss_dssp             HHHHHHHH--TCCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCC-
T ss_pred             HHHHHHhc--CCCCcCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccc-----ccccccccccc
Confidence            45667776  799999999999999999999998864   899999999999999999999886     57999999987


Q ss_pred             CCC-----ccEEEEEec
Q psy14969        664 QQD-----ASRVNISVE  675 (687)
Q Consensus       664 daP-----FDLILVVfA  675 (687)
                      ..|     ||+|+....
T Consensus        74 ~l~~~~~~fD~v~~~~~   90 (231)
T d1vl5a_          74 QMPFTDERFHIVTCRIA   90 (231)
T ss_dssp             CCCSCTTCEEEEEEESC
T ss_pred             ccccccccccccccccc
Confidence            654     888877644

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=1e-11  Score=121.55  Aligned_cols=98  Identities=18%  Similarity=0.226  Sum_probs=83.3

Q ss_pred             ccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccC
Q psy14969        572 LENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD  651 (687)
Q Consensus       572 IG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaS  651 (687)
                      +.++..|..|...+.++..+  ++.||++|||+|||+|++|..||+.++|.|+|+++|+++++++.|++|++....  ..
T Consensus        73 ~~r~tqiiypkD~s~Ii~~l--~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~--~~  148 (264)
T d1i9ga_          73 MPRGPQVIYPKDAAQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG--QP  148 (264)
T ss_dssp             SCSCSCCCCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT--SC
T ss_pred             ccCCccccchHHHHHHHHHh--CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc--CC
Confidence            34456678899999999998  899999999999999999999999999999999999999999999999998632  11


Q ss_pred             CCcEEEEEcCCC-----CCCccEEEEE
Q psy14969        652 EGVVNIMRTLPP-----QQDASRVNIS  673 (687)
Q Consensus       652 sgRI~LI~GDAe-----daPFDLILVV  673 (687)
                      ..++.++.+|..     +..||.|++.
T Consensus       149 ~~nv~~~~~d~~~~~~~~~~fDaV~ld  175 (264)
T d1i9ga_         149 PDNWRLVVSDLADSELPDGSVDRAVLD  175 (264)
T ss_dssp             CTTEEEECSCGGGCCCCTTCEEEEEEE
T ss_pred             CceEEEEecccccccccCCCcceEEEe
Confidence            357888888854     4558988775

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=9.2e-12  Score=121.11  Aligned_cols=95  Identities=22%  Similarity=0.274  Sum_probs=81.4

Q ss_pred             cCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC
Q psy14969        573 ENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE  652 (687)
Q Consensus       573 G~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs  652 (687)
                      ..+..+..|...+.++..+  ++++|++|||+|||+|++|+.||+.++|.|+|+++|+++++++.|+++++..++    .
T Consensus        81 ~r~~qiiypkd~~~Ii~~l--~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~----~  154 (266)
T d1o54a_          81 KRRTQIVYPKDSSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----I  154 (266)
T ss_dssp             CC-CCCCCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----G
T ss_pred             cCCccccchHHHHHHHHhh--CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc----c
Confidence            3445677889999999988  899999999999999999999999998899999999999999999999999987    5


Q ss_pred             CcEEEEEcCCC----CCCccEEEEE
Q psy14969        653 GVVNIMRTLPP----QQDASRVNIS  673 (687)
Q Consensus       653 gRI~LI~GDAe----daPFDLILVV  673 (687)
                      .++.+..+|..    ...+|.|+..
T Consensus       155 ~~v~~~~~d~~~~~~~~~~D~V~~d  179 (266)
T d1o54a_         155 ERVTIKVRDISEGFDEKDVDALFLD  179 (266)
T ss_dssp             GGEEEECCCGGGCCSCCSEEEEEEC
T ss_pred             cCcEEEeccccccccccceeeeEec
Confidence            67788777743    3457777664

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.8e-11  Score=122.61  Aligned_cols=105  Identities=24%  Similarity=0.312  Sum_probs=85.9

Q ss_pred             CCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        567 DYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       567 D~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      |..+.+.++..|..|.-.+.++..+  ++.||++|||+|||+|++|..||+.++|.|+|+++|+++++++.|++|+++.+
T Consensus        70 d~~~~~~r~tqiiypkD~~~Il~~l--~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~  147 (324)
T d2b25a1          70 DYVVLMKRGTAITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR  147 (324)
T ss_dssp             HHHHHSCCSSCCCCHHHHHHHHHHH--TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCCCcccccccHHHHHHHh--CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhh
Confidence            3334445667788999999999998  89999999999999999999999999999999999999999999999999864


Q ss_pred             C----C--ccCCCcEEEEEcCCCC-------CCccEEEEE
Q psy14969        647 A----H--LLDEGVVNIMRTLPPQ-------QDASRVNIS  673 (687)
Q Consensus       647 ~----~--VaSsgRI~LI~GDAed-------aPFDLILVV  673 (687)
                      .    .  ....+++.+..+|...       .+||.|++.
T Consensus       148 ~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD  187 (324)
T d2b25a1         148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD  187 (324)
T ss_dssp             HHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEEC
T ss_pred             hhhhhhhhhccccceeEEecchhhcccccCCCCcceEeec
Confidence            3    0  1124689999998653       458888764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.15  E-value=1.3e-10  Score=106.26  Aligned_cols=88  Identities=20%  Similarity=0.217  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      .++..+...+...++++.+|||||||||..+..|++... |+.+|+|+|+|+.|++.|+++++..+.    ..++.+..+
T Consensus        24 ~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~----~~~~~~~~~   99 (225)
T d1im8a_          24 NIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCN   99 (225)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC----SSCEEEECS
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc----cchhhhccc
Confidence            355555555544578999999999999999999998753 577999999999999999999998775    567888888


Q ss_pred             CCCCCC---ccEEEEE
Q psy14969        661 LPPQQD---ASRVNIS  673 (687)
Q Consensus       661 DAedaP---FDLILVV  673 (687)
                      +....+   +|.|+..
T Consensus       100 d~~~~~~~~~d~i~~~  115 (225)
T d1im8a_         100 DIRHVEIKNASMVILN  115 (225)
T ss_dssp             CTTTCCCCSEEEEEEE
T ss_pred             hhhccccccceeeEEe
Confidence            877655   4666554

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=1.4e-10  Score=102.84  Aligned_cols=72  Identities=18%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFD  668 (687)
                      .++++.+|||||||+|.++..+++..   .+|+|+|+|+.|++.|++++...+.      ++.++.+++..     ..||
T Consensus        34 ~l~~~~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~~------~~~~~~~d~~~l~~~~~~fD  104 (226)
T d1ve3a1          34 YMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRES------NVEFIVGDARKLSFEDKTFD  104 (226)
T ss_dssp             SCCSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC------CCEEEECCTTSCCSCTTCEE
T ss_pred             hcCCCCEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhccccc------cccccccccccccccCcCce
Confidence            46788899999999999999999874   3899999999999999999988775      56788888765     4488


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|+...
T Consensus       105 ~I~~~~  110 (226)
T d1ve3a1         105 YVIFID  110 (226)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            887654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.12  E-value=1.5e-10  Score=109.38  Aligned_cols=75  Identities=13%  Similarity=-0.015  Sum_probs=65.9

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----cc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----AS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FD  668 (687)
                      .+.++.+|||||||+|..+..|++..+  ++|+|||+++.+++.|+++....++    ..++.++.+++..+|     ||
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl----~~~v~~~~~d~~~l~~~~~sfD  137 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVKYGSFLEIPCEDNSYD  137 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEEECCTTSCSSCTTCEE
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhcccccccc----cccccccccccccccccccccc
Confidence            578899999999999999999998764  5899999999999999999999998    678999999986654     78


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|+...
T Consensus       138 ~V~~~~  143 (282)
T d2o57a1         138 FIWSQD  143 (282)
T ss_dssp             EEEEES
T ss_pred             hhhccc
Confidence            887653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=6.1e-11  Score=116.45  Aligned_cols=128  Identities=15%  Similarity=0.172  Sum_probs=97.5

Q ss_pred             CCCHHHHHHHHhCCCcc-CCCCC----CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHH
Q psy14969        540 YKTKELRDLMIKVDRKD-FCPPN----RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAAC  614 (687)
Q Consensus       540 IdS~EV~qAMraVPRea-FVP~g----yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAa  614 (687)
                      +++.++......+.|+. -.|-+    ...|....+.++.+..|++|++.-.+-..+......+.+|||+|||||.++..
T Consensus        46 ~~~~~~~~~~~~~~rr~~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~  125 (274)
T d2b3ta1          46 LTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALA  125 (274)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHH
Confidence            55555555555555543 33433    34677888999999999999877655544433345667999999999999999


Q ss_pred             HHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEEEE
Q psy14969        615 LGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVNIS  673 (687)
Q Consensus       615 LArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLILVV  673 (687)
                      +|... |+.+|+|+|+++.+++.|++|++.+++     .++.++.+|..    ...||+|+..
T Consensus       126 la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~-----~~v~~~~~d~~~~~~~~~fDlIvsN  182 (274)
T d2b3ta1         126 LASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNIHILQSDWFSALAGQQFAMIVSN  182 (274)
T ss_dssp             HHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred             HHhhC-CcceeeeccchhHHHhHHHHHHHHhCc-----ccceeeecccccccCCCceeEEEec
Confidence            99987 688999999999999999999999987     46999999853    3468877443

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.11  E-value=7.7e-11  Score=101.51  Aligned_cols=87  Identities=11%  Similarity=-0.078  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-------CccCCC
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA-------HLLDEG  653 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~-------~VaSsg  653 (687)
                      |.+.+.+.+ |  .+.+|.+|||||||+|+.+..||+..   .+|+|+|+|+.|++.|+++.+..+.       ......
T Consensus         7 ~~~~~~~~~-l--~~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~   80 (201)
T d1pjza_           7 KDLQQYWSS-L--NVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   80 (201)
T ss_dssp             HHHHHHHHH-H--CCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             HHHHHHHHH-c--CCCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc
Confidence            555554443 4  58899999999999999999999885   4999999999999999999876543       111234


Q ss_pred             cEEEEEcCCCCCC------ccEEEEE
Q psy14969        654 VVNIMRTLPPQQD------ASRVNIS  673 (687)
Q Consensus       654 RI~LI~GDAedaP------FDLILVV  673 (687)
                      .+.++.++....+      ||.|+..
T Consensus        81 ~~~~~~~d~~~l~~~~~~~~D~i~~~  106 (201)
T d1pjza_          81 GIEIWCGDFFALTARDIGHCAAFYDR  106 (201)
T ss_dssp             SSEEEEECCSSSTHHHHHSEEEEEEE
T ss_pred             ccceecccccccccccccceeEEEEE
Confidence            5678888876543      6777554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=9.8e-11  Score=113.28  Aligned_cols=82  Identities=23%  Similarity=0.272  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +..++++++....++|++|||||||||.+++.+++..   ++|+|+|+++.|++.|++|++.+++      .+.++.++.
T Consensus       106 TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g---~~V~gvDis~~av~~A~~na~~n~~------~~~~~~~d~  176 (254)
T d2nxca1         106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGV------RPRFLEGSL  176 (254)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTC------CCEEEESCH
T ss_pred             hhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcC---CEEEEEECChHHHHHHHHHHHHcCC------ceeEEeccc
Confidence            4567777776678899999999999999999888764   3899999999999999999999987      456777774


Q ss_pred             C----CCCccEEEEE
Q psy14969        663 P----QQDASRVNIS  673 (687)
Q Consensus       663 e----daPFDLILVV  673 (687)
                      .    ..+||+|+..
T Consensus       177 ~~~~~~~~fD~V~an  191 (254)
T d2nxca1         177 EAALPFGPFDLLVAN  191 (254)
T ss_dssp             HHHGGGCCEEEEEEE
T ss_pred             cccccccccchhhhc
Confidence            3    4679988765

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.10  E-value=9.4e-11  Score=107.91  Aligned_cols=85  Identities=11%  Similarity=0.108  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT  660 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G  660 (687)
                      +.....+.+.+.....++.+|||||||+|.++..|++...   +|+|||+|+.|++.|+++++..+.      ++.++++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~------~v~~~~~   91 (246)
T d1y8ca_          21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGL------KPRLACQ   91 (246)
T ss_dssp             HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTC------CCEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCc------cceeecc
Confidence            3355566665543445568999999999999999998854   899999999999999999998876      6889988


Q ss_pred             CCC----CCCccEEEEEe
Q psy14969        661 LPP----QQDASRVNISV  674 (687)
Q Consensus       661 DAe----daPFDLILVVf  674 (687)
                      |..    ..+||+|++.+
T Consensus        92 d~~~~~~~~~fD~i~~~~  109 (246)
T d1y8ca_          92 DISNLNINRKFDLITCCL  109 (246)
T ss_dssp             CGGGCCCSCCEEEEEECT
T ss_pred             chhhhcccccccccceee
Confidence            864    34589887653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.09  E-value=1.9e-10  Score=104.68  Aligned_cols=72  Identities=15%  Similarity=0.193  Sum_probs=61.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDL  669 (687)
                      ...++.+|||||||||.++..|++...   .|+|||+|+.|++.|+++++..+.      ++.+..+++...    .||+
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~------~i~~~~~d~~~l~~~~~fD~  108 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEIAFKNEFDA  108 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGCCCCSCEEE
T ss_pred             cCCCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccc------cchheehhhhhcccccccch
Confidence            355677999999999999999998753   899999999999999999999876      789999997654    4788


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |++.+
T Consensus       109 I~~~~  113 (251)
T d1wzna1         109 VTMFF  113 (251)
T ss_dssp             EEECS
T ss_pred             Hhhhh
Confidence            87754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.99  E-value=1.1e-09  Score=99.03  Aligned_cols=82  Identities=20%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969        584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP  663 (687)
Q Consensus       584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe  663 (687)
                      ...+++.+  .+.++++|||||||+|+++..+++...   +|+++|+++.+++.|+++++.+++   ...++.++.+|..
T Consensus        41 t~lLi~~l--~~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l---~~~~i~~~~~d~~  112 (194)
T d1dusa_          41 TKILVENV--VVDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNL---DNYDIRVVHSDLY  112 (194)
T ss_dssp             HHHHHHHC--CCCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTC---TTSCEEEEECSTT
T ss_pred             HHHHHHhC--CcCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCC---ccceEEEEEcchh
Confidence            45566666  577899999999999999999998764   899999999999999999999886   2346899988853


Q ss_pred             ----CCCccEEEEE
Q psy14969        664 ----QQDASRVNIS  673 (687)
Q Consensus       664 ----daPFDLILVV  673 (687)
                          ...||+|+..
T Consensus       113 ~~~~~~~fD~Ii~~  126 (194)
T d1dusa_         113 ENVKDRKYNKIITN  126 (194)
T ss_dssp             TTCTTSCEEEEEEC
T ss_pred             hhhccCCceEEEEc
Confidence                4568988653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.98  E-value=8.8e-10  Score=102.98  Aligned_cols=74  Identities=23%  Similarity=0.255  Sum_probs=60.3

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +.+.++......++||++|||||||+|+.+..+|+.+ +.++|+|||+++.|++.|+++.+..+       ++.++.+++
T Consensus        42 laa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~-------ni~~i~~d~  113 (209)
T d1nt2a_          42 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERN-------NIIPLLFDA  113 (209)
T ss_dssp             HHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCS-------SEEEECSCT
T ss_pred             HHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccC-------CceEEEeec
Confidence            4444443222268899999999999999999999998 47899999999999999999988754       678888886


Q ss_pred             CC
Q psy14969        663 PQ  664 (687)
Q Consensus       663 ed  664 (687)
                      ..
T Consensus       114 ~~  115 (209)
T d1nt2a_         114 SK  115 (209)
T ss_dssp             TC
T ss_pred             cC
Confidence            64

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.2e-09  Score=103.56  Aligned_cols=94  Identities=16%  Similarity=0.177  Sum_probs=77.5

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|....++..+.  ....+++|||||||+||.|+++|+.++++|+|+++|++++..+.|++++++.++    ..++.++
T Consensus        43 i~~~~g~lL~~L~--~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~----~~~i~~~  116 (219)
T d2avda1          43 MTCEQAQLLANLA--RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKIDLR  116 (219)
T ss_dssp             CCHHHHHHHHHHH--HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTEEEE
T ss_pred             cCHHHHHHHHHHH--HccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc----cceEEEE
Confidence            4455544443333  455788999999999999999999987789999999999999999999999998    7889999


Q ss_pred             EcCC-----------CCCCccEEEEEecCCC
Q psy14969        659 RTLP-----------PQQDASRVNISVEPQK  678 (687)
Q Consensus       659 ~GDA-----------edaPFDLILVVfAP~K  678 (687)
                      .|++           ...+||+|++..+.-.
T Consensus       117 ~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~  147 (219)
T d2avda1         117 LKPALETLDELLAAGEAGTFDVAVVDADKEN  147 (219)
T ss_dssp             ESCHHHHHHHHHHTTCTTCEEEEEECSCSTT
T ss_pred             EeehhhcchhhhhhcccCCccEEEEeCCHHH
Confidence            9985           2467999999876543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.97  E-value=1.2e-09  Score=101.64  Aligned_cols=76  Identities=21%  Similarity=0.181  Sum_probs=63.4

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPF  667 (687)
                      ...++.+|||||||+|..+..+++..  .+.|+|||+|+.|++.|+++++..+.    ..++.+.++|+.      ...|
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~----~~~v~f~~~D~~~~~~~~~~~f   94 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHMDLGKEF   94 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCC----SSEEEEEESCTTTSCCCCSSCE
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCC----CcceEEEEcchhhhcccccccc
Confidence            47789999999999999999998764  25899999999999999999988775    557899999873      2358


Q ss_pred             cEEEEEec
Q psy14969        668 SRVNISVE  675 (687)
Q Consensus       668 DLILVVfA  675 (687)
                      |+|++.++
T Consensus        95 D~V~~~~~  102 (252)
T d1ri5a_          95 DVISSQFS  102 (252)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEcce
Confidence            98877654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.96  E-value=1.7e-09  Score=97.06  Aligned_cols=71  Identities=11%  Similarity=-0.006  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRV  670 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLI  670 (687)
                      ..++.+|||||||+|..+..|++...   +|+|+|+++.|++.|+++.+..++     ..+.+..+|..    ...||+|
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~~~~~d~~~~~~~~~fD~I   99 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGL-----DNLQTDLVDLNTLTFDGEYDFI   99 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC-----TTEEEEECCTTTCCCCCCEEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccc-----cchhhhheecccccccccccEE
Confidence            33456999999999999999998854   899999999999999999999887     45788877754    3568988


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      +..
T Consensus       100 ~~~  102 (198)
T d2i6ga1         100 LST  102 (198)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=1.1e-09  Score=106.27  Aligned_cols=85  Identities=18%  Similarity=0.121  Sum_probs=70.5

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+++.+  .+++|++|||||||+|.++..+++..+  .+|+|||+|+.+++.|++++++.++    ..++.+...+.
T Consensus        40 k~~~~~~~l--~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l----~~~~~~~~~d~  111 (280)
T d2fk8a1          40 KVDLNLDKL--DLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLLQGW  111 (280)
T ss_dssp             HHHHHHTTS--CCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCG
T ss_pred             HHHHHHHHc--CCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhcc----ccchhhhhhhh
Confidence            345555555  789999999999999999999998865  5999999999999999999999998    66788887775


Q ss_pred             C--CCCccEEEEEec
Q psy14969        663 P--QQDASRVNISVE  675 (687)
Q Consensus       663 e--daPFDLILVVfA  675 (687)
                      .  ..+||.|+.+-.
T Consensus       112 ~~~~~~fD~i~si~~  126 (280)
T d2fk8a1         112 EDFAEPVDRIVSIEA  126 (280)
T ss_dssp             GGCCCCCSEEEEESC
T ss_pred             hhhccchhhhhHhhH
Confidence            4  456999977643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.93  E-value=9e-10  Score=105.19  Aligned_cols=80  Identities=11%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----------
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----------  663 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----------  663 (687)
                      ...+++||||||++||.|++||+.++++|+|+++|.++..++.|++++++.|+    .+++.++.|++.           
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~----~~~i~~~~g~a~~~L~~l~~~~~  132 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFREGPALPVLDEMIKDEK  132 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHCGG
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc----ccceeeeehHHHHHHHHHHhccc
Confidence            34678999999999999999999997789999999999999999999999998    789999999973           


Q ss_pred             -CCCccEEEEEecCCC
Q psy14969        664 -QQDASRVNISVEPQK  678 (687)
Q Consensus       664 -daPFDLILVVfAP~K  678 (687)
                       ..+||+|++.++...
T Consensus       133 ~~~~fD~iFiDa~k~~  148 (227)
T d1susa1         133 NHGSYDFIFVDADKDN  148 (227)
T ss_dssp             GTTCBSEEEECSCSTT
T ss_pred             cCCceeEEEeccchhh
Confidence             347999999887644

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.91  E-value=2.5e-09  Score=102.18  Aligned_cols=75  Identities=17%  Similarity=0.136  Sum_probs=64.3

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASR  669 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDL  669 (687)
                      .+.++.+|||||||+|+.+..+++..++.++|+|+|+++.+++.|+++++..+.      ++.+..+|+...    .||+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~------~~~f~~~d~~~~~~~~~fD~   97 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY------DSEFLEGDATEIELNDKYDI   97 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS------EEEEEESCTTTCCCSSCEEE
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc------cccccccccccccccCCceE
Confidence            456788999999999999999999886567999999999999999999998876      788999987654    3788


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus        98 v~~~~  102 (281)
T d2gh1a1          98 AICHA  102 (281)
T ss_dssp             EEEES
T ss_pred             EEEeh
Confidence            87654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=3e-09  Score=104.38  Aligned_cols=85  Identities=19%  Similarity=0.100  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .....+++.+  .+++|++|||||||.|.++..+|+..+  ++|+||++|+..++.|+++++..++    ..++.+...+
T Consensus        48 ~k~~~~~~~l--~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l----~~~v~~~~~d  119 (291)
T d1kpia_          48 AKRKLALDKL--NLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVRIQG  119 (291)
T ss_dssp             HHHHHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCC----SSCEEEEECC
T ss_pred             HHHHHHHHhc--CCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhcc----chhhhhhhhc
Confidence            3456666666  799999999999999999999998875  5999999999999999999999998    6788888887


Q ss_pred             CC--CCCccEEEEEe
Q psy14969        662 PP--QQDASRVNISV  674 (687)
Q Consensus       662 Ae--daPFDLILVVf  674 (687)
                      ..  +.+||.|+.+-
T Consensus       120 ~~~~~~~fD~i~sie  134 (291)
T d1kpia_         120 WEEFDEPVDRIVSLG  134 (291)
T ss_dssp             GGGCCCCCSEEEEES
T ss_pred             ccccccccceEeech
Confidence            54  46899998763

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.88  E-value=1.9e-09  Score=102.56  Aligned_cols=88  Identities=17%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             HHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      +.|.++..+. ..++||++|||+|||+|+.+..||+.++|.|+|+|+|+++.+++.|+++++..+       .+..+.++
T Consensus        58 laa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~-------~~~~i~~d  130 (227)
T d1g8aa_          58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-------NIVPILGD  130 (227)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-------TEEEEECC
T ss_pred             HHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC-------CceEEEEE
Confidence            5555544332 167899999999999999999999999999999999999999999999876654       45556666


Q ss_pred             CCC--------CCccEEEEEecCC
Q psy14969        662 PPQ--------QDASRVNISVEPQ  677 (687)
Q Consensus       662 Aed--------aPFDLILVVfAP~  677 (687)
                      +..        ..+|.|+..+..+
T Consensus       131 ~~~~~~~~~~~~~vD~i~~d~~~~  154 (227)
T d1g8aa_         131 ATKPEEYRALVPKVDVIFEDVAQP  154 (227)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCCST
T ss_pred             CCCcccccccccceEEEEEEcccc
Confidence            432        3356666655443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=3.4e-09  Score=103.76  Aligned_cols=85  Identities=20%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+++.+  .+++|++|||||||.|..+..+|+..+  ++|+||++|+..++.|++++++.+.    .+++.+..+|.
T Consensus        50 k~~~~~~~l--~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~----~~~v~~~~~d~  121 (285)
T d1kpga_          50 KIDLALGKL--GLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSEN----LRSKRVLLAGW  121 (285)
T ss_dssp             HHHHHHTTT--TCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCC----CSCEEEEESCG
T ss_pred             HHHHHHHHc--CCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhh----hhhhHHHHhhh
Confidence            345555555  789999999999999999999999875  6999999999999999999999987    78999999885


Q ss_pred             C--CCCccEEEEEec
Q psy14969        663 P--QQDASRVNISVE  675 (687)
Q Consensus       663 e--daPFDLILVVfA  675 (687)
                      .  ..+||.|+.+-+
T Consensus       122 ~~~~~~fD~i~si~~  136 (285)
T d1kpga_         122 EQFDEPVDRIVSIGA  136 (285)
T ss_dssp             GGCCCCCSEEEEESC
T ss_pred             hcccccccceeeehh
Confidence            4  467999877643

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=4.4e-09  Score=97.43  Aligned_cols=89  Identities=16%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             cccCcHHHHHHHHHHhhh-cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969        576 SYLNSPSFIASSLEPALL-KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV  654 (687)
Q Consensus       576 qTISaP~VvAlLLElLke-dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR  654 (687)
                      ++.+.|.+++.++..... ....|.+|||+|||||.++..++...  ..+|+|+|+++.+++.|++|++..+.      +
T Consensus        24 qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g--~~~v~~vdi~~~~~~~a~~N~~~~~~------~   95 (201)
T d1wy7a1          24 QYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG------K   95 (201)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT------S
T ss_pred             cCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC--CCEEEEEcCcHHHHHHHHHHHHHcCC------C
Confidence            344556666666543321 23468899999999999998877653  24899999999999999999988876      6


Q ss_pred             EEEEEcCCC--CCCccEEEE
Q psy14969        655 VNIMRTLPP--QQDASRVNI  672 (687)
Q Consensus       655 I~LI~GDAe--daPFDLILV  672 (687)
                      ..++.+|+.  ..+||+|+.
T Consensus        96 ~~~~~~d~~~~~~~fD~Vi~  115 (201)
T d1wy7a1          96 FKVFIGDVSEFNSRVDIVIM  115 (201)
T ss_dssp             EEEEESCGGGCCCCCSEEEE
T ss_pred             ceEEECchhhhCCcCcEEEE
Confidence            788888865  456887643

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.3e-09  Score=99.20  Aligned_cols=90  Identities=12%  Similarity=0.153  Sum_probs=69.1

Q ss_pred             CCccccCCcccCcHHHHHH----HHHHhhh---cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        568 YSVMLENCSYLNSPSFIAS----SLEPALL---KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       568 ~pLPIG~GqTISaP~VvAl----LLElLke---dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      ..+.+..+..|++|.....    +.+.+..   .-.+..++||||||+|.+++.||+.. |+.+|+|+|+++.+++.|++
T Consensus        25 l~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~  103 (250)
T d2h00a1          25 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKK  103 (250)
T ss_dssp             CCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHH
T ss_pred             ceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHH
Confidence            3456677888887755333    3332211   11234589999999999999999988 58899999999999999999


Q ss_pred             HHHHcCCCccCCCcEEEEEcCC
Q psy14969        641 NIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       641 NLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      |++.+++    .+++.++..+.
T Consensus       104 N~~~n~l----~~~~~~~~~~~  121 (250)
T d2h00a1         104 NVEQNNL----SDLIKVVKVPQ  121 (250)
T ss_dssp             HHHHTTC----TTTEEEEECCT
T ss_pred             HHHHhCC----Ccceeeeeecc
Confidence            9999998    78888887653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.83  E-value=5.7e-09  Score=98.98  Aligned_cols=73  Identities=12%  Similarity=0.182  Sum_probs=57.8

Q ss_pred             HHHHHHHHhhh-cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        583 FIASSLEPALL-KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       583 VvAlLLElLke-dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      +.|.++..+.. .++||++|||||||||+.+..+|..+ |+|.|+|||+++.|++.|+++....+       ++..+.++
T Consensus        59 laA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~-------ni~~i~~d  130 (230)
T d1g8sa_          59 LAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERE-------NIIPILGD  130 (230)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCT-------TEEEEECC
T ss_pred             HHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhc-------ccceEEEe
Confidence            55555443321 57899999999999999999999986 68999999999999999998865543       56667777


Q ss_pred             CC
Q psy14969        662 PP  663 (687)
Q Consensus       662 Ae  663 (687)
                      +.
T Consensus       131 ~~  132 (230)
T d1g8sa_         131 AN  132 (230)
T ss_dssp             TT
T ss_pred             ec
Confidence            54

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=2.3e-09  Score=100.66  Aligned_cols=76  Identities=13%  Similarity=0.231  Sum_probs=67.3

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----------  664 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----------  664 (687)
                      ..+.+|||||||+||.|+.||+.++++++|+++|+++.+++.|+++++..|+    .+++.++.|++.+           
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl----~~~i~l~~Gd~~e~l~~l~~~~~~  130 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL----QDKVTILNGASQDLIPQLKKKYDV  130 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCHHHHGGGHHHHSCC
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC----Cccceeeeccccccccchhhcccc
Confidence            3668999999999999999999987789999999999999999999999998    7889999999642           


Q ss_pred             CCccEEEEEec
Q psy14969        665 QDASRVNISVE  675 (687)
Q Consensus       665 aPFDLILVVfA  675 (687)
                      .+||+|++..+
T Consensus       131 ~~~D~ifiD~~  141 (214)
T d2cl5a1         131 DTLDMVFLDHW  141 (214)
T ss_dssp             CCEEEEEECSC
T ss_pred             cccceeeeccc
Confidence            46899988754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=6.9e-09  Score=92.93  Aligned_cols=66  Identities=23%  Similarity=0.163  Sum_probs=51.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----cc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----AS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FD  668 (687)
                      .+.++.+|||||||+|.++..|++..   .+|+|+|+++.|++.|+++...           .++.+++.+++     ||
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~-----------~~~~~~~~~l~~~~~~fD  104 (246)
T d2avna1          39 YLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDLPFPSGAFE  104 (246)
T ss_dssp             HCCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCS-----------CEEECCTTSCCSCTTCEE
T ss_pred             hcCCCCEEEEECCCCchhcccccccc---eEEEEeeccccccccccccccc-----------cccccccccccccccccc
Confidence            46688899999999999999999874   3899999999999999986321           13456665443     77


Q ss_pred             EEEEE
Q psy14969        669 RVNIS  673 (687)
Q Consensus       669 LILVV  673 (687)
                      +|+..
T Consensus       105 ~ii~~  109 (246)
T d2avna1         105 AVLAL  109 (246)
T ss_dssp             EEEEC
T ss_pred             ceeee
Confidence            77654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5.4e-09  Score=96.88  Aligned_cols=86  Identities=16%  Similarity=0.166  Sum_probs=65.0

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..|.+.++ ...+   ..+|++|||||||+|+.+..+++..+  .+|+|||+++.+++.|+++.+..+.      ++.++
T Consensus        39 ~~~~~~~l-a~~~---~~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~------~~~~~  106 (229)
T d1zx0a1          39 ETPYMHAL-AAAA---SSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTH------KVIPL  106 (229)
T ss_dssp             GHHHHHHH-HHHH---TTTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSS------EEEEE
T ss_pred             HHHHHHHH-HHhh---ccCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhccc------ccccc
Confidence            34555443 3333   46789999999999999999997642  4899999999999999999887664      66777


Q ss_pred             EcCC-------CCCCccEEEEEecC
Q psy14969        659 RTLP-------PQQDASRVNISVEP  676 (687)
Q Consensus       659 ~GDA-------edaPFDLILVVfAP  676 (687)
                      .+++       +..+||.|+....+
T Consensus       107 ~~~~~~~~~~~~~~~fD~i~fD~~~  131 (229)
T d1zx0a1         107 KGLWEDVAPTLPDGHFDGILYDTYP  131 (229)
T ss_dssp             ESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             cccccccccccccccccceeecccc
Confidence            6653       45779988765443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.4e-09  Score=95.68  Aligned_cols=90  Identities=9%  Similarity=-0.132  Sum_probs=68.5

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----------
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA-----------  647 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~-----------  647 (687)
                      ..|.+...+.+.+  .+.++.+|||+|||+|+.+..||+...   +|+|||+|+.|++.|+++......           
T Consensus        29 ~~~~l~~~~~~~l--~~~~~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~  103 (229)
T d2bzga1          29 GHQLLKKHLDTFL--KGKSGLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTK  103 (229)
T ss_dssp             CCHHHHHHHHHHH--TTCCSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCE
T ss_pred             CCHHHHHHHHHhc--CCCCCCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccc
Confidence            3566777776766  577889999999999999999998754   899999999999999998765321           


Q ss_pred             -CccCCCcEEEEEcCCC------CCCccEEEEE
Q psy14969        648 -HLLDEGVVNIMRTLPP------QQDASRVNIS  673 (687)
Q Consensus       648 -~VaSsgRI~LI~GDAe------daPFDLILVV  673 (687)
                       ......++.+.++|..      ...||+|...
T Consensus       104 ~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~  136 (229)
T d2bzga1         104 VFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDR  136 (229)
T ss_dssp             EEEETTSSEEEEESCGGGGGGSCCCCEEEEEES
T ss_pred             eeeecCCcEEEEEcchhhccccccCceeEEEEE
Confidence             0112457899999853      3457777543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4e-09  Score=96.17  Aligned_cols=74  Identities=18%  Similarity=0.071  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      ..++.+|||||||+|..+..++....  .+|+|||+++.|++.|+++++..+.     .++.+++++...     ..||+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~-----~~~~f~~~d~~~~~~~~~~fD~  130 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGK-----RVRNYFCCGLQDFTPEPDSYDV  130 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGG-----GEEEEEECCGGGCCCCSSCEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccc-----cccccccccccccccccccccc
Confidence            45678999999999999988765543  3899999999999999999888765     467899988653     45788


Q ss_pred             EEEEec
Q psy14969        670 VNISVE  675 (687)
Q Consensus       670 ILVVfA  675 (687)
                      |+....
T Consensus       131 I~~~~~  136 (222)
T d2ex4a1         131 IWIQWV  136 (222)
T ss_dssp             EEEESC
T ss_pred             cccccc
Confidence            877643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.73  E-value=1.3e-08  Score=98.21  Aligned_cols=73  Identities=23%  Similarity=0.272  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----CccEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ----DASRV  670 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda----PFDLI  670 (687)
                      +++|.+|||+|||+|+++..+|+..  .++|+|+|+++.+++.|++|++.+++    .+++.++.||+...    .||.|
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l----~~~v~~~~~D~~~~~~~~~~D~I  178 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPGENIADRI  178 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCCCSCEEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCC----CceEEEEEcchHHhccCCCCCEE
Confidence            6789999999999999999999874  36999999999999999999999998    78899999998654    37877


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      ++.
T Consensus       179 i~~  181 (260)
T d2frna1         179 LMG  181 (260)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.72  E-value=2.1e-08  Score=90.54  Aligned_cols=86  Identities=15%  Similarity=0.074  Sum_probs=64.1

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +...+..++...+..|.+|||+|||+|.+++.++...   ++|+++|.++.+++.|++|++..++    ..++....++.
T Consensus        27 v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~g---a~vv~vD~~~~a~~~~~~N~~~~~~----~~~v~~~~~d~   99 (171)
T d1ws6a1          27 LRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL----GARVVALPVEV   99 (171)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC----CCEEECSCHHH
T ss_pred             HHHHHHHHhhccccCCCeEEEeccccchhhhhhhhcc---chhhhcccCHHHHhhhhHHHHhhcc----ccceeeeehhc
Confidence            3444445554456788999999999999998877664   4899999999999999999999987    44555544432


Q ss_pred             -------CCCCccEEEEEecCC
Q psy14969        663 -------PQQDASRVNISVEPQ  677 (687)
Q Consensus       663 -------edaPFDLILVVfAP~  677 (687)
                             ...+||+|++  +||
T Consensus       100 ~~~~~~~~~~~fD~If~--DPP  119 (171)
T d1ws6a1         100 FLPEAKAQGERFTVAFM--APP  119 (171)
T ss_dssp             HHHHHHHTTCCEEEEEE--CCC
T ss_pred             ccccccccCCccceeEE--ccc
Confidence                   2356897754  465

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.70  E-value=3.8e-08  Score=92.37  Aligned_cols=86  Identities=22%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             CcccCcHHHHHHHHHHhhh-cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCC
Q psy14969        575 CSYLNSPSFIASSLEPALL-KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG  653 (687)
Q Consensus       575 GqTISaP~VvAlLLElLke-dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsg  653 (687)
                      .|+.+.|.+.+.++..+.. .--.|++|||+|||||.++..++....  .+|+|+|+++.+++.|++|++          
T Consensus        25 eQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N~~----------   92 (197)
T d1ne2a_          25 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG----------   92 (197)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT----------
T ss_pred             ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHccc----------
Confidence            3455667777766544422 233689999999999999988776642  489999999999999999853          


Q ss_pred             cEEEEEcCCCC--CCccEEEE
Q psy14969        654 VVNIMRTLPPQ--QDASRVNI  672 (687)
Q Consensus       654 RI~LI~GDAed--aPFDLILV  672 (687)
                      ++.++.+|...  ..||.|+.
T Consensus        93 ~~~~~~~D~~~l~~~fD~Vi~  113 (197)
T d1ne2a_          93 GVNFMVADVSEISGKYDTWIM  113 (197)
T ss_dssp             TSEEEECCGGGCCCCEEEEEE
T ss_pred             cccEEEEehhhcCCcceEEEe
Confidence            34567777553  44776543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.68  E-value=4.7e-08  Score=91.46  Aligned_cols=80  Identities=20%  Similarity=0.220  Sum_probs=66.8

Q ss_pred             HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-
Q psy14969        586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-  664 (687)
Q Consensus       586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-  664 (687)
                      .+++.+  ++.+..+|||||||+|.++..+++.. |+.+++++|+ +++++.|++++...++    ..++.++.+|... 
T Consensus        71 ~~~~~~--d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~rv~~~~~D~~~~  142 (253)
T d1tw3a2          71 APAAAY--DWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFEP  142 (253)
T ss_dssp             HHHHHS--CCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTSC
T ss_pred             HHHhhc--CCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhc----ccchhhccccchhh
Confidence            344445  56778899999999999999999997 6889999998 6899999999999987    6899999998533 


Q ss_pred             --CCccEEEEE
Q psy14969        665 --QDASRVNIS  673 (687)
Q Consensus       665 --aPFDLILVV  673 (687)
                        ..||+|++.
T Consensus       143 ~~~~~D~v~~~  153 (253)
T d1tw3a2         143 LPRKADAIILS  153 (253)
T ss_dssp             CSSCEEEEEEE
T ss_pred             cccchhheeec
Confidence              348888765

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=2.1e-08  Score=98.20  Aligned_cols=127  Identities=15%  Similarity=0.179  Sum_probs=91.0

Q ss_pred             CCCHHHHHHHHhCCCcc-CCCCC----CCCCCCCCccccCCcccCcHHHHHHHHHHhhh-cCCCCCeEEEEcCCccHHHH
Q psy14969        540 YKTKELRDLMIKVDRKD-FCPPN----RNPYHDYSVMLENCSYLNSPSFIASSLEPALL-KLKPGDTVLDVGTGSGYTAA  613 (687)
Q Consensus       540 IdS~EV~qAMraVPRea-FVP~g----yqAYsD~pLPIG~GqTISaP~VvAlLLElLke-dLkpG~RVLDIGCGTGYLTA  613 (687)
                      +++.++.+...-+.|+. -.|-+    ...|....+.++.+..|++|.+.-.+-..+.. ...+..+|||+|||+|..+.
T Consensus        47 l~~~~~~~~~~~i~rR~~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~  126 (271)
T d1nv8a_          47 VSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGV  126 (271)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred             CCHHHHHHHHHHHHHhhCCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhh
Confidence            55555555544455553 22333    35777888999999999999775443322211 12234689999999999999


Q ss_pred             HHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCccEEEE
Q psy14969        614 CLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDASRVNI  672 (687)
Q Consensus       614 aLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPFDLILV  672 (687)
                      .+++.  |+++|+|+|+++.+++.|++|++++++    ..++.+..++...      ..||+|+.
T Consensus       127 ~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~----~~~~~i~~~~~~~~~~~~~~~fDlIVs  185 (271)
T d1nv8a_         127 SVAKF--SDAIVFATDVSSKAVEIARKNAERHGV----SDRFFVRKGEFLEPFKEKFASIEMILS  185 (271)
T ss_dssp             HHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTC----TTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred             hhhhc--ccceeeechhhhhHHHHHHHHHHHcCC----CceeEEeecccccccccccCcccEEEE
Confidence            98864  578999999999999999999999998    6678888877432      46786644

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.67  E-value=2.8e-08  Score=90.93  Aligned_cols=78  Identities=6%  Similarity=0.072  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ++..+++.+... .++.+|||||||+|.++..+++...   +|+|||+++++++.|+++..         ..+.++.++.
T Consensus         7 ~~~~~~~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~   73 (225)
T d2p7ia1           7 MHPFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLK---------DGITYIHSRF   73 (225)
T ss_dssp             HHHHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSC---------SCEEEEESCG
T ss_pred             HHHHHHHHhhhh-CCCCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccc---------cccccccccc
Confidence            344555555433 3567899999999999999987753   79999999999999987632         3578888876


Q ss_pred             CC----CCccEEEEE
Q psy14969        663 PQ----QDASRVNIS  673 (687)
Q Consensus       663 ed----aPFDLILVV  673 (687)
                      ..    ..||+|+..
T Consensus        74 ~~~~~~~~fD~I~~~   88 (225)
T d2p7ia1          74 EDAQLPRRYDNIVLT   88 (225)
T ss_dssp             GGCCCSSCEEEEEEE
T ss_pred             ccccccccccccccc
Confidence            43    448888764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.1e-08  Score=97.45  Aligned_cols=84  Identities=13%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC----ccCCCcE
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH----LLDEGVV  655 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~----VaSsgRI  655 (687)
                      .+.....+++.+  .++++++|||||||+|..+..+|+..+ ..+|+|||+++.+++.|+++++.....    -....++
T Consensus       136 ~~~~~~~~~~~~--~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i  212 (328)
T d1nw3a_         136 SFDLVAQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY  212 (328)
T ss_dssp             CHHHHHHHHHHS--CCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHHHHHHHHHc--CCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence            556777888877  789999999999999999999998864 568999999999999999887764320    0124579


Q ss_pred             EEEEcCCCCCC
Q psy14969        656 NIMRTLPPQQD  666 (687)
Q Consensus       656 ~LI~GDAedaP  666 (687)
                      .|++||....+
T Consensus       213 ~~~~gd~~~~~  223 (328)
T d1nw3a_         213 TLERGDFLSEE  223 (328)
T ss_dssp             EEEECCTTSHH
T ss_pred             EEEECcccccc
Confidence            99999988765

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.65  E-value=2.8e-08  Score=87.64  Aligned_cols=73  Identities=19%  Similarity=0.147  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASRV  670 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDLI  670 (687)
                      .|.+|||+|||||.++..++....  .+|+++|.++.+++.++++++..++    ..++.++.+|+.      ...||+|
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~----~~~~~ii~~D~~~~l~~~~~~fDiI   87 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLLKMEAERAIDCLTGRFDLV   87 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhccc----ccchhhhccccccccccccccccee
Confidence            689999999999999987776643  4999999999999999999999987    678999999964      4679988


Q ss_pred             EEEecCC
Q psy14969        671 NISVEPQ  677 (687)
Q Consensus       671 LVVfAP~  677 (687)
                      ++  +||
T Consensus        88 f~--DPP   92 (152)
T d2esra1          88 FL--DPP   92 (152)
T ss_dssp             EE--CCS
T ss_pred             Ee--chh
Confidence            66  455

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=1.1e-07  Score=92.55  Aligned_cols=87  Identities=23%  Similarity=0.314  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      .+...+++++  .+.++.+|||+-||+|.+|..||+.+.   +|+|+|.++++++.|++|++.+++     .++.++.++
T Consensus       199 ~l~~~v~~~~--~~~~~~~vlDLycG~G~fsl~La~~~~---~V~gvE~~~~ai~~A~~na~~n~i-----~n~~~~~~~  268 (358)
T d1uwva2         199 KMVARALEWL--DVQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGL-----QNVTFYHEN  268 (358)
T ss_dssp             HHHHHHHHHH--TCCTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECC
T ss_pred             HHHHHHHHhh--ccCCCceEEEecccccccchhcccccc---EEEeccCcHHHHHHHHHhHHhccc-----ccceeeecc
Confidence            4455555555  577889999999999999999998765   999999999999999999999997     678999988


Q ss_pred             CCC---------CCccEEEEEecCCCcC
Q psy14969        662 PPQ---------QDASRVNISVEPQKSG  680 (687)
Q Consensus       662 Aed---------aPFDLILVVfAP~K~g  680 (687)
                      ...         ..+|+  ++++|++.|
T Consensus       269 ~~~~~~~~~~~~~~~d~--vilDPPR~G  294 (358)
T d1uwva2         269 LEEDVTKQPWAKNGFDK--VLLDPARAG  294 (358)
T ss_dssp             TTSCCSSSGGGTTCCSE--EEECCCTTC
T ss_pred             hhhhhhhhhhhhccCce--EEeCCCCcc
Confidence            653         33564  578899998

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=3.7e-08  Score=93.38  Aligned_cols=86  Identities=17%  Similarity=0.071  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC-
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL-  661 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD-  661 (687)
                      ..+.+.+.+  ...++.+|||||||+|..+..||+..   .+|+|+|+|+.|++.|+++....+.... ..+..+...+ 
T Consensus        44 ~~~~l~~~l--~~~~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~~~~~~~-~~~~~~~~~~~  117 (292)
T d1xvaa_          44 YKAWLLGLL--RQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPA-FDKWVIEEANW  117 (292)
T ss_dssp             HHHHHHHHH--HHTTCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHH-HHTCEEEECCG
T ss_pred             HHHHHHHHh--hhcCCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHhcccccc-cceeeeeeccc
Confidence            345555655  45567899999999999999999874   3899999999999999999888765111 0122233332 


Q ss_pred             -------CCCCCccEEEEEe
Q psy14969        662 -------PPQQDASRVNISV  674 (687)
Q Consensus       662 -------AedaPFDLILVVf  674 (687)
                             +....||.|++.+
T Consensus       118 ~~~~~~~~~~~~fd~v~~~~  137 (292)
T d1xvaa_         118 LTLDKDVPAGDGFDAVICLG  137 (292)
T ss_dssp             GGHHHHSCCTTCEEEEEECS
T ss_pred             cccccccCCCCCceEEEEec
Confidence                   2344588887654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.58  E-value=1.1e-07  Score=88.78  Aligned_cols=75  Identities=13%  Similarity=0.239  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCccE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDASR  669 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPFDL  669 (687)
                      .+..|||||||+|..+..+|+.. |+..++|||+++.++..|.+++++.++     .++.++.+|+.       ...+|.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l-----~Nv~~~~~Da~~l~~~~~~~~~d~  102 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA-----QNVKLLNIDADTLTDVFEPGEVKR  102 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC-----SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred             CCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhc-----cCchhcccchhhhhcccCchhhhc
Confidence            34589999999999999999986 688999999999999999999999987     57999999964       455898


Q ss_pred             EEEEecCC
Q psy14969        670 VNISVEPQ  677 (687)
Q Consensus       670 ILVVfAP~  677 (687)
                      |.+.+..+
T Consensus       103 v~i~fp~P  110 (204)
T d2fcaa1         103 VYLNFSDP  110 (204)
T ss_dssp             EEEESCCC
T ss_pred             cccccccc
Confidence            88876443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=8.3e-08  Score=93.34  Aligned_cols=71  Identities=20%  Similarity=0.238  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----ccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----ASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FDL  669 (687)
                      ..+|++|||||||+|.++..+|++.+  .+|+|+|.++ +++.|+++.+..+.    ..++.++.++....+     +|+
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s~-~~~~a~~~~~~~~~----~~~i~~i~~~~~~l~~~~~~~D~  108 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGF----SDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTTTSCCSSSCEEE
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCCH-HHHHHHHHHHHhCc----cccceEEEeehhhccCcccceeE
Confidence            34789999999999999998888753  4899999996 77899999999988    788999999976543     565


Q ss_pred             EEE
Q psy14969        670 VNI  672 (687)
Q Consensus       670 ILV  672 (687)
                      |+.
T Consensus       109 i~s  111 (328)
T d1g6q1_         109 IIS  111 (328)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.1e-07  Score=91.33  Aligned_cols=72  Identities=22%  Similarity=0.271  Sum_probs=57.6

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----Ccc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFD  668 (687)
                      .+.++++|||||||+|.++..+|++.+  .+|+|+|.++.+. .|++...+.+.    ..++.++.++..+.     .||
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~-~a~~~~~~~~~----~~~i~~~~~~~~~l~~~~~~~D  104 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILY-QAMDIIRLNKL----EDTITLIKGKIEEVHLPVEKVD  104 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHH-HHHHHHHHTTC----TTTEEEEESCTTTSCCSCSCEE
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHH-HHHHHHHHhCC----CccceEEEeeHHHhcCccccce
Confidence            455789999999999999999998753  4899999999876 56777777776    67899999997753     366


Q ss_pred             EEEE
Q psy14969        669 RVNI  672 (687)
Q Consensus       669 LILV  672 (687)
                      +|+.
T Consensus       105 ~Ivs  108 (311)
T d2fyta1         105 VIIS  108 (311)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6544

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.54  E-value=1e-07  Score=93.77  Aligned_cols=74  Identities=24%  Similarity=0.214  Sum_probs=63.9

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---------C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------Q  664 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------d  664 (687)
                      .+++|.+|||+|||+|..+..+|+..  ..+|+++|+++.+++.|++|++.+|+    ..++.++.+|+.         .
T Consensus       142 ~~~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl----~~~~~~~~~d~~~~~~~~~~~~  215 (324)
T d2as0a2         142 WVQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEKLQKKG  215 (324)
T ss_dssp             GCCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHTT
T ss_pred             hcCCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCC----CccceeeechhhhhhHHHHhcc
Confidence            36789999999999999999988764  24899999999999999999999998    668999999963         4


Q ss_pred             CCccEEEEE
Q psy14969        665 QDASRVNIS  673 (687)
Q Consensus       665 aPFDLILVV  673 (687)
                      .+||+|++.
T Consensus       216 ~~fD~Vi~D  224 (324)
T d2as0a2         216 EKFDIVVLD  224 (324)
T ss_dssp             CCEEEEEEC
T ss_pred             CCCCchhcC
Confidence            679988654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=9.3e-08  Score=88.86  Aligned_cols=85  Identities=12%  Similarity=0.202  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969        582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL  661 (687)
Q Consensus       582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD  661 (687)
                      -|...+++++  .+.++..+||++||+|..|..+++.. |+++|+|+|.++.|++.|+++++..+.      ++.++.++
T Consensus        10 Vll~evi~~l--~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~------r~~~~~~~   80 (192)
T d1m6ya2          10 VMVREVIEFL--KPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSD------RVSLFKVS   80 (192)
T ss_dssp             TTHHHHHHHH--CCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTT------TEEEEECC
T ss_pred             hHHHHHHHhh--CCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccc------cccchhHH
Confidence            3677778888  78999999999999999999999988 589999999999999999999988753      78898887


Q ss_pred             CC----------CCCccEEEEEec
Q psy14969        662 PP----------QQDASRVNISVE  675 (687)
Q Consensus       662 Ae----------daPFDLILVVfA  675 (687)
                      ..          ..++|.|+..+.
T Consensus        81 f~~~~~~~~~~~~~~vdgIl~DlG  104 (192)
T d1m6ya2          81 YREADFLLKTLGIEKVDGILMDLG  104 (192)
T ss_dssp             GGGHHHHHHHTTCSCEEEEEEECS
T ss_pred             HhhHHHHHHHcCCCCcceeeeccc
Confidence            43          256888887753

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=1.4e-07  Score=91.48  Aligned_cols=71  Identities=20%  Similarity=0.277  Sum_probs=57.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----CccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFDL  669 (687)
                      +.+|++|||||||+|.++..+|++.+  .+|+|+|.++. ...|+++++.+++    .+++.++.++..+.     .+|+
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~-~~~a~~~~~~n~~----~~~v~~~~~~~~~~~~~~~~~D~  103 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSI-SDYAVKIVKANKL----DHVVTIIKGKVEEVELPVEKVDI  103 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTT-HHHHHHHHHHTTC----TTTEEEEESCTTTCCCSSSCEEE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHH-HhhhhhHHHHhCC----ccccceEeccHHHcccccceeEE
Confidence            34789999999999999999988743  38999999975 5778888888888    78899999998754     3566


Q ss_pred             EEE
Q psy14969        670 VNI  672 (687)
Q Consensus       670 ILV  672 (687)
                      |+.
T Consensus       104 ivs  106 (316)
T d1oria_         104 IIS  106 (316)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.49  E-value=1.1e-07  Score=90.83  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=63.7

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM  658 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI  658 (687)
                      ..+.+...+++.+  .+.++++|||||||+|.+|..|++...   +|++||+++.+++.++++....       .++.++
T Consensus         5 ~d~~i~~~iv~~~--~~~~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~~-------~n~~i~   72 (235)
T d1qama_           5 TSKHNIDKIMTNI--RLNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDH-------DNFQVL   72 (235)
T ss_dssp             CCHHHHHHHHTTC--CCCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTC-------CSEEEE
T ss_pred             CCHHHHHHHHHhc--CCCCCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhcc-------cchhhh
Confidence            4556788888877  788999999999999999999998864   8999999999999998876442       478999


Q ss_pred             EcCCCCCC
Q psy14969        659 RTLPPQQD  666 (687)
Q Consensus       659 ~GDAedaP  666 (687)
                      .||+...+
T Consensus        73 ~~D~l~~~   80 (235)
T d1qama_          73 NKDILQFK   80 (235)
T ss_dssp             CCCGGGCC
T ss_pred             hhhhhhcc
Confidence            99976543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.48  E-value=4e-07  Score=84.85  Aligned_cols=72  Identities=10%  Similarity=0.214  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------CCccE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------QDASR  669 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------aPFDL  669 (687)
                      ....|||||||+|.++..+|+.. |+..++|+|+++.++..|.+++.+.++     .++.++.+++..       ..+|.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l-----~Ni~~~~~da~~l~~~~~~~~~~~  104 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV-----PNIKLLWVDGSDLTDYFEDGEIDR  104 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC-----SSEEEEECCSSCGGGTSCTTCCSE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcc-----ccceeeecCHHHHhhhccCCceeh
Confidence            34589999999999999999997 688999999999999999999999987     579999999753       44788


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |.+.+
T Consensus       105 i~i~f  109 (204)
T d1yzha1         105 LYLNF  109 (204)
T ss_dssp             EEEES
T ss_pred             hcccc
Confidence            88776

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.47  E-value=1.7e-07  Score=88.56  Aligned_cols=71  Identities=14%  Similarity=0.081  Sum_probs=55.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDL  669 (687)
                      ..++.+|||||||+|.+|..|+....  ..|++||+++.|++.|++++...       ..+.+..++..     ...||+
T Consensus        91 ~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T d1xtpa_          91 GHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGGCCCCSSCEEE
T ss_pred             CCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccccc-------ccceeEEccccccccCCCccce
Confidence            45677999999999999988776543  28999999999999999886543       35788888753     456898


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus       162 I~~~~  166 (254)
T d1xtpa_         162 IVIQW  166 (254)
T ss_dssp             EEEES
T ss_pred             EEeec
Confidence            87753

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.46  E-value=4.7e-07  Score=85.59  Aligned_cols=74  Identities=19%  Similarity=0.136  Sum_probs=63.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---CCccEE
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---QDASRV  670 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---aPFDLI  670 (687)
                      ++.+..+|||||||+|.++..+++.. |+.+++++|+ +++++.|+++++..+.    ..++.++.++...   ..+|+|
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~----~~ri~~~~~d~~~~~p~~~D~v  151 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFKPLPVTADVV  151 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCSCCEEEE
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCC----cceeeeeeeeccccccccchhh
Confidence            46677899999999999999999997 6889999997 8899999999999887    6789999988542   347877


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      ++.
T Consensus       152 ~~~  154 (256)
T d1qzza2         152 LLS  154 (256)
T ss_dssp             EEE
T ss_pred             hcc
Confidence            654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=2.8e-07  Score=94.81  Aligned_cols=64  Identities=19%  Similarity=0.341  Sum_probs=57.2

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      .|.++..+++.+  .+++|++|||||||+|..+..+|+..+ .++|+|||+++.+++.|+++.+..+
T Consensus       201 ~~~~i~~Il~~l--~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~  264 (406)
T d1u2za_         201 LPNFLSDVYQQC--QLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELK  264 (406)
T ss_dssp             CHHHHHHHHHHT--TCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh--CCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHh
Confidence            566788888888  799999999999999999999999875 4589999999999999999988754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=2.8e-07  Score=81.97  Aligned_cols=61  Identities=15%  Similarity=0.230  Sum_probs=46.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR  669 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL  669 (687)
                      +.++.+|||||||+|.++..++       +++|||+++.|++.|+++            .+.+++++..+     ..||+
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~------------~~~~~~~d~~~l~~~~~~fD~   94 (208)
T d1vlma_          34 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFDF   94 (208)
T ss_dssp             HCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEEE
T ss_pred             hCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc------------ccccccccccccccccccccc
Confidence            3466789999999999876652       478999999999999874            35677777654     34788


Q ss_pred             EEEEe
Q psy14969        670 VNISV  674 (687)
Q Consensus       670 ILVVf  674 (687)
                      |+...
T Consensus        95 I~~~~   99 (208)
T d1vlma_          95 ALMVT   99 (208)
T ss_dssp             EEEES
T ss_pred             ccccc
Confidence            87654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.34  E-value=2.1e-07  Score=91.62  Aligned_cols=70  Identities=23%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---------CCC
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------QQD  666 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------daP  666 (687)
                      ..|++|||+|||||.++..+|+.+   ++|+++|+++.+++.|++|++.+++     .++.++.+|+.         ...
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl-----~~~~~i~~d~~~~~~~~~~~~~~  215 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGL-----GNVRVLEANAFDLLRRLEKEGER  215 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTC-----TTEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCC-----CCcceeeccHHHHhhhhHhhhcC
Confidence            368999999999999999888654   4899999999999999999999997     46899999863         357


Q ss_pred             ccEEEEE
Q psy14969        667 ASRVNIS  673 (687)
Q Consensus       667 FDLILVV  673 (687)
                      ||+|++.
T Consensus       216 fD~Vi~D  222 (318)
T d1wxxa2         216 FDLVVLD  222 (318)
T ss_dssp             EEEEEEC
T ss_pred             CCEEEEc
Confidence            9988665

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.30  E-value=1.6e-06  Score=86.49  Aligned_cols=84  Identities=10%  Similarity=-0.026  Sum_probs=65.8

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+.+.+. ...++.+|||++||||.++..++...   ++|++||.++.+++.|++|++.+++   ...++.++.+|+
T Consensus       119 nr~~~~~~~~-~~~~~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~~---~~~~~~~i~~D~  191 (309)
T d2igta1         119 HWEWLKNAVE-TADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGL---EQAPIRWICEDA  191 (309)
T ss_dssp             HHHHHHHHHH-HSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTC---TTSCEEEECSCH
T ss_pred             HHHHHHHHHh-hccCCCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhcc---cCCcEEEEeCCH
Confidence            3444444432 45578899999999999999888654   4899999999999999999999987   234799999997


Q ss_pred             C---------CCCccEEEEE
Q psy14969        663 P---------QQDASRVNIS  673 (687)
Q Consensus       663 e---------daPFDLILVV  673 (687)
                      .         ...||+|++.
T Consensus       192 ~~~l~~~~~~~~~fD~IilD  211 (309)
T d2igta1         192 MKFIQREERRGSTYDIILTD  211 (309)
T ss_dssp             HHHHHHHHHHTCCBSEEEEC
T ss_pred             HHhHHHHhhcCCCCCEEEEC
Confidence            3         3579987653

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.28  E-value=2.2e-06  Score=78.08  Aligned_cols=86  Identities=17%  Similarity=0.069  Sum_probs=67.6

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      +-..+...|. ....|.+|||++||||.++..++....  ..|++||.++.+++.+++|++..+.    ..++.++.+|+
T Consensus        28 vrealFn~l~-~~~~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~----~~~~~i~~~D~  100 (182)
T d2fhpa1          28 VKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKE----PEKFEVRKMDA  100 (182)
T ss_dssp             HHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCH
T ss_pred             HHHHHHHHHH-HhcCCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhc----ccccccccccc
Confidence            4444555542 345789999999999999998777753  3899999999999999999999887    56899999996


Q ss_pred             C---------CCCccEEEEEecCC
Q psy14969        663 P---------QQDASRVNISVEPQ  677 (687)
Q Consensus       663 e---------daPFDLILVVfAP~  677 (687)
                      .         ..+||+|+  ++||
T Consensus       101 ~~~l~~~~~~~~~fDlIf--lDPP  122 (182)
T d2fhpa1         101 NRALEQFYEEKLQFDLVL--LDPP  122 (182)
T ss_dssp             HHHHHHHHHTTCCEEEEE--ECCC
T ss_pred             hhhhhhhcccCCCcceEE--echh
Confidence            3         45799765  4455

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=9.9e-07  Score=86.53  Aligned_cols=80  Identities=25%  Similarity=0.331  Sum_probs=68.6

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..+.+...+++.+  .+.+++.|||||+|+|.+|..|++...   +|++||+++.+++..++++.....    .+++.+
T Consensus         4 L~d~~i~~kIv~~~--~~~~~d~VlEIGPG~G~LT~~Ll~~~~---~v~aiE~D~~l~~~L~~~~~~~~~----~~~~~~   74 (278)
T d1zq9a1           4 LKNPLIINSIIDKA--ALRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPV----ASKLQV   74 (278)
T ss_dssp             ECCHHHHHHHHHHT--CCCTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTT----GGGEEE
T ss_pred             cCCHHHHHHHHHHh--CCCCCCEEEEECCCchHHHHHHHhcCC---cEEEEEEccchhHHHHHHHhhhcc----ccchhh
Confidence            45677888888887  688899999999999999999998864   899999999999999998877544    468999


Q ss_pred             EEcCCCCCC
Q psy14969        658 MRTLPPQQD  666 (687)
Q Consensus       658 I~GDAedaP  666 (687)
                      +.+|+...+
T Consensus        75 i~~D~l~~~   83 (278)
T d1zq9a1          75 LVGDVLKTD   83 (278)
T ss_dssp             EESCTTTSC
T ss_pred             hHHHHhhhh
Confidence            999987654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.6e-07  Score=83.99  Aligned_cols=59  Identities=14%  Similarity=0.043  Sum_probs=45.6

Q ss_pred             HHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        587 SLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       587 LLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      +.+.+.....+|.+|||||||+|.++..++....  ..|+|+|+++.|++.|+++++....
T Consensus        41 ~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~   99 (257)
T d2a14a1          41 LHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPG   99 (257)
T ss_dssp             HHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred             HHHHhcccCCCCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccc
Confidence            3333333456788999999999998877765532  3799999999999999999987653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.7e-06  Score=80.76  Aligned_cols=78  Identities=14%  Similarity=0.024  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhc-----CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC---------
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMV-----RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL---------  661 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLV-----GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD---------  661 (687)
                      ++..+|||||||+|.++..++..+     +....++|||+++.|++.|+++++....  ...-++.+....         
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN--LENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS--CTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc--cccccccchhhhhhhhcchhc
Confidence            344489999999999998887653     1234789999999999999999876543  111123333332         


Q ss_pred             --CCCCCccEEEEEec
Q psy14969        662 --PPQQDASRVNISVE  675 (687)
Q Consensus       662 --AedaPFDLILVVfA  675 (687)
                        .+...||+|+....
T Consensus       117 ~~~~~~~fD~I~~~~~  132 (280)
T d1jqea_         117 EKKELQKWDFIHMIQM  132 (280)
T ss_dssp             TSSSCCCEEEEEEESC
T ss_pred             ccCCCCceeEEEEccc
Confidence              23456999887643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.20  E-value=2.3e-06  Score=84.51  Aligned_cols=78  Identities=15%  Similarity=0.051  Sum_probs=63.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC---------CC
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP---------PQ  664 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA---------ed  664 (687)
                      .+.+|.+|||++||||.++..++...  ...|++||+++.+++.|++|++.+++   ...++.++.+|+         ..
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l---~~~~~~~i~~d~~~~l~~~~~~~  215 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHL---DMANHQLVVMDVFDYFKYARRHH  215 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTC---CCTTEEEEESCHHHHHHHHHHTT
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcc---cCcceEEEEccHHHHHHHHHhhc
Confidence            35689999999999999998877543  34899999999999999999999987   235799999997         24


Q ss_pred             CCccEEEEEecCCC
Q psy14969        665 QDASRVNISVEPQK  678 (687)
Q Consensus       665 aPFDLILVVfAP~K  678 (687)
                      .+||+|++.  ||.
T Consensus       216 ~~fD~Ii~D--PP~  227 (317)
T d2b78a2         216 LTYDIIIID--PPS  227 (317)
T ss_dssp             CCEEEEEEC--CCC
T ss_pred             CCCCEEEEc--Chh
Confidence            579987554  553

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=5.8e-07  Score=86.78  Aligned_cols=78  Identities=13%  Similarity=0.111  Sum_probs=64.1

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..+.+...+++.+  .+.+++.|||||||+|++|..|++...   +|++||+++.+++..+++...       ..++.+
T Consensus         4 L~d~~~~~~Iv~~~--~~~~~d~vlEIGpG~G~LT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~~~~i   71 (252)
T d1qyra_           4 LNDQFVIDSIVSAI--NPQKGQAMVEIGPGLAALTEPVGERLD---QLTVIELDRDLAARLQTHPFL-------GPKLTI   71 (252)
T ss_dssp             ECCHHHHHHHHHHH--CCCTTCCEEEECCTTTTTHHHHHTTCS---CEEEECCCHHHHHHHHTCTTT-------GGGEEE
T ss_pred             cCCHHHHHHHHHhc--CCCCCCEEEEECCCchHHHHHHHccCC---ceEEEEeccchhHHHHHHhhh-------ccchhH
Confidence            34567888888888  688899999999999999999998764   899999999999988764322       358999


Q ss_pred             EEcCCCCCCc
Q psy14969        658 MRTLPPQQDA  667 (687)
Q Consensus       658 I~GDAedaPF  667 (687)
                      +.+|+...++
T Consensus        72 i~~D~l~~~~   81 (252)
T d1qyra_          72 YQQDAMTFNF   81 (252)
T ss_dssp             ECSCGGGCCH
T ss_pred             Hhhhhhhhcc
Confidence            9999876544

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=5.4e-06  Score=75.08  Aligned_cols=70  Identities=13%  Similarity=0.014  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASRV  670 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDLI  670 (687)
                      .+.+|||++||||.++..++....  ..|++||.++.+++.+++|++..+.     .++.++.+|+.      ..+||+|
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~~-----~~~~ii~~d~~~~l~~~~~~fDlI  115 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKA-----GNARVVNSNAMSFLAQKGTPHNIV  115 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCHHHHHSSCCCCEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhccc-----cceeeeeecccccccccccccCEE
Confidence            678999999999999997776653  3899999999999999999998775     46778887743      4668877


Q ss_pred             EEE
Q psy14969        671 NIS  673 (687)
Q Consensus       671 LVV  673 (687)
                      ++.
T Consensus       116 f~D  118 (183)
T d2fpoa1         116 FVD  118 (183)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.13  E-value=6.8e-08  Score=92.96  Aligned_cols=77  Identities=26%  Similarity=0.348  Sum_probs=63.4

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI  657 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L  657 (687)
                      +..+.+...+++.+  .+.++++|||||||+|.+|..|++...   +|+|||+++.+++.+++++..       ..++.+
T Consensus        12 L~d~~ii~kIv~~~--~~~~~d~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~~~-------~~n~~i   79 (245)
T d1yuba_          12 LTSEKVLNQIIKQL--NLKETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKL-------NTRVTL   79 (245)
T ss_dssp             CCCTTTHHHHHHHC--CCCSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTT-------CSEEEE
T ss_pred             cCCHHHHHHHHHhc--CCCCCCeEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhhhh-------ccchhh
Confidence            34456788888887  788999999999999999999998864   899999999999887765533       247899


Q ss_pred             EEcCCCCCC
Q psy14969        658 MRTLPPQQD  666 (687)
Q Consensus       658 I~GDAedaP  666 (687)
                      +.+|+...+
T Consensus        80 i~~D~l~~~   88 (245)
T d1yuba_          80 IHQDILQFQ   88 (245)
T ss_dssp             CCSCCTTTT
T ss_pred             hhhhhhccc
Confidence            999987544

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.2e-05  Score=76.30  Aligned_cols=78  Identities=12%  Similarity=0.202  Sum_probs=66.5

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------C
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------Q  665 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------a  665 (687)
                      .+++|.+|||+++|.|.-|+.||.+++..+.|+++|+++.-++..++++++.|+     ..+.+...|...        .
T Consensus        91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-----~~~~~~~~d~~~~~~~~~~~~  165 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-----SCCELAEEDFLAVSPSDPRYH  165 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCGGGSCTTCGGGT
T ss_pred             CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-----cceeeeehhhhhhcccccccc
Confidence            688999999999999999999999887789999999999999999999999997     457777776432        3


Q ss_pred             CccEEEEEecCC
Q psy14969        666 DASRVNISVEPQ  677 (687)
Q Consensus       666 PFDLILVVfAP~  677 (687)
                      .||.|++.+ ||
T Consensus       166 ~fD~VL~Da-PC  176 (293)
T d2b9ea1         166 EVHYILLDP-SC  176 (293)
T ss_dssp             TEEEEEECC-CC
T ss_pred             eeeEEeecC-cc
Confidence            489887763 54

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9.8e-06  Score=76.20  Aligned_cols=62  Identities=11%  Similarity=0.040  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      +...+.+.+......|.+|||||||+|.++...+....  .+|+|+|+++.|++.|++++++..
T Consensus        40 ~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~  101 (263)
T d2g72a1          40 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEP  101 (263)
T ss_dssp             HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCc
Confidence            34444444433455788999999999988765554432  389999999999999999876543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.71  E-value=7.2e-05  Score=71.65  Aligned_cols=92  Identities=9%  Similarity=-0.025  Sum_probs=63.3

Q ss_pred             CcccCcHHHHHHHHHHhhh--cCCCCCeEEEEcCCccHHHHHHHHhcC----CCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q psy14969        575 CSYLNSPSFIASSLEPALL--KLKPGDTVLDVGTGSGYTAACLGYMVR----PHGKVYSLDHMEYLVNFSKENIRKNHAH  648 (687)
Q Consensus       575 GqTISaP~VvAlLLElLke--dLkpG~RVLDIGCGTGYLTAaLArLVG----P~GrVtGIDISpeAVE~ARKNLKkaG~~  648 (687)
                      |+..+++.+...|...+..  ..+++.+|||.|||+|.+...+...+.    +...++|+|+++.+++.|+.++...+. 
T Consensus        93 g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-  171 (328)
T d2f8la1          93 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-  171 (328)
T ss_dssp             GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-
T ss_pred             CeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-
Confidence            3444445555555544321  456778999999999999888765432    235899999999999999999887765 


Q ss_pred             ccCCCcEEEEEcCCC----CCCccEEEE
Q psy14969        649 LLDEGVVNIMRTLPP----QQDASRVNI  672 (687)
Q Consensus       649 VaSsgRI~LI~GDAe----daPFDLILV  672 (687)
                           ...+..++..    ...||+|+.
T Consensus       172 -----~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         172 -----KMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             -----CCEEEESCTTSCCCCCCEEEEEE
T ss_pred             -----hhhhhcccccccccccccccccc
Confidence                 4556666643    345776533

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.65  E-value=0.00011  Score=71.95  Aligned_cols=78  Identities=19%  Similarity=0.320  Sum_probs=66.9

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCcc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDAS  668 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFD  668 (687)
                      .+++|++|||+++|.|.=|..++.+....|.|+++|+++.-++..++++++.++     .++.+...++.     ...||
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-----~~i~~~~~d~~~~~~~~~~fD  187 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-----LNVILFHSSSLHIGELNVEFD  187 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-----CSEEEESSCGGGGGGGCCCEE
T ss_pred             cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-----hcccccccccccccccccccc
Confidence            688999999999999999999999987789999999999999999999999987     45666666643     45699


Q ss_pred             EEEEEecCC
Q psy14969        669 RVNISVEPQ  677 (687)
Q Consensus       669 LILVVfAP~  677 (687)
                      .|++.+ ||
T Consensus       188 ~ILvDa-PC  195 (313)
T d1ixka_         188 KILLDA-PC  195 (313)
T ss_dssp             EEEEEC-CT
T ss_pred             EEEEcc-cc
Confidence            997776 43

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.62  E-value=7.5e-05  Score=73.57  Aligned_cols=80  Identities=20%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      ...+++||.||.|.|..+..+.+.. +..+|++||+++.+++.|++.+...+-.+....|++++.+|+.      ...||
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            4567899999999999998887664 4669999999999999999998664333455779999999964      45699


Q ss_pred             EEEEEec
Q psy14969        669 RVNISVE  675 (687)
Q Consensus       669 LILVVfA  675 (687)
                      +|++...
T Consensus       154 vIi~D~~  160 (312)
T d1uira_         154 VVIIDLT  160 (312)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9998753

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.61  E-value=1.4e-05  Score=70.92  Aligned_cols=57  Identities=11%  Similarity=0.099  Sum_probs=47.0

Q ss_pred             CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy14969        579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF  637 (687)
Q Consensus       579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~  637 (687)
                      +.+.+..+|++.+  ...++.+|||.|||+|.++..+.+.......++|+|+++.++..
T Consensus         3 TP~~i~~~m~~l~--~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~   59 (223)
T d2ih2a1           3 TPPEVVDFMVSLA--EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL   59 (223)
T ss_dssp             CCHHHHHHHHHHC--CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC
T ss_pred             CCHHHHHHHHHhc--CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh
Confidence            3567888888887  67889999999999999988887776556789999999876543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.45  E-value=0.00043  Score=62.27  Aligned_cols=76  Identities=18%  Similarity=0.087  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC--------CCCCcc
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP--------PQQDAS  668 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA--------edaPFD  668 (687)
                      .+.+|||+.||||.++...+....  ..|+.||.++.+++..++|++..+.   ......+...+.        ...+||
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~---~~~~~~~~~~d~~~~l~~~~~~~~fD  117 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKC---SSEQAEVINQSSLDFLKQPQNQPHFD  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTC---CTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred             ccceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhcc---cccccccccccccccccccccCCccc
Confidence            678999999999999999887754  4999999999999999999999876   122455554441        234588


Q ss_pred             EEEEEecCCCc
Q psy14969        669 RVNISVEPQKS  679 (687)
Q Consensus       669 LILVVfAP~K~  679 (687)
                      +|+  .+||=.
T Consensus       118 lIF--lDPPY~  126 (183)
T d2ifta1         118 VVF--LDPPFH  126 (183)
T ss_dssp             EEE--ECCCSS
T ss_pred             EEE--echhHh
Confidence            664  456543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00049  Score=66.32  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCc
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDA  667 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPF  667 (687)
                      .+.+|.+|||+++|.|.=|..|+.+.. ++.|+++|+++.-++..++++++.|+     ..+.....+..      ...|
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~-----~~~~~~~~~~~~~~~~~~~~f  172 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM-----KATVKQGDGRYPSQWCGEQQF  172 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC-----CCEEEECCTTCTHHHHTTCCE
T ss_pred             CccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccc-----cceeeeccccccchhcccccc
Confidence            688999999999999999999998864 68999999999999999999999997     22333333322      2359


Q ss_pred             cEEEEEecCC
Q psy14969        668 SRVNISVEPQ  677 (687)
Q Consensus       668 DLILVVfAP~  677 (687)
                      |.|++.+ ||
T Consensus       173 d~IL~Da-PC  181 (284)
T d1sqga2         173 DRILLDA-PC  181 (284)
T ss_dssp             EEEEEEC-CC
T ss_pred             cEEEEec-cc
Confidence            9997775 55

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00081  Score=62.89  Aligned_cols=69  Identities=20%  Similarity=0.283  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVN  671 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLIL  671 (687)
                      ++.+|||||||.|.=+..+|-+. |+.+|+.+|.+..-+...+.-....++     .++.++++.++.    .+||+|+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~~~~~~~fD~V~  137 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKL-----ENIEPVQSRVEEFPSEPPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEECCTTTSCCCSCEEEEE
T ss_pred             cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCC-----cceeeeccchhhhccccccceeh
Confidence            56799999999999999999776 789999999999999999999999987     468888888775    3578665

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.00074  Score=66.30  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      .....+||-||.|.|..+..+++.. +..+|++||+++.+++.|++.+....- .....|+.++.+|+.      ...||
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yD  164 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIANGAEYVRKFKNEFD  164 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcc-cccCCCcEEEhhhHHHHHhcCCCCCC
Confidence            3456899999999999988887764 356899999999999999998765431 244679999999963      45699


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++..
T Consensus       165 vIi~D~  170 (295)
T d1inla_         165 VIIIDS  170 (295)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            999873

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.97  E-value=0.0011  Score=64.00  Aligned_cols=78  Identities=17%  Similarity=0.091  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      ...+.+||-||-|.|..+..+.+.- +..+|+.||+++.+++.|++.+.... ......|+.++.+|+.      ...||
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~-~~~~d~r~~i~~~D~~~~l~~~~~~yD  150 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIA-GKLDDPRVDVQVDDGFMHIAKSENQYD  150 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHH-TTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhc-ccccCCCeEEEechHHHHHhhcCCCCC
Confidence            4567899999999999999888764 35699999999999999999876532 2345679999999963      46699


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++..
T Consensus       151 vIi~D~  156 (274)
T d1iy9a_         151 VIMVDS  156 (274)
T ss_dssp             EEEESC
T ss_pred             EEEEcC
Confidence            998873

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.95  E-value=0.0011  Score=63.83  Aligned_cols=78  Identities=14%  Similarity=0.024  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----CccCCCcEEEEEcCCC-----C
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA-----HLLDEGVVNIMRTLPP-----Q  664 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~-----~VaSsgRI~LI~GDAe-----d  664 (687)
                      ..++.+||.||.|.|..+..+.+.  +..+|+.||+++.+++.|++.+....-     ......|+.++.+|+.     .
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            456789999999999998887764  335899999999999999987643221     0123568999999964     4


Q ss_pred             CCccEEEEEe
Q psy14969        665 QDASRVNISV  674 (687)
Q Consensus       665 aPFDLILVVf  674 (687)
                      ..||+|++..
T Consensus       148 ~~yDvIi~D~  157 (276)
T d1mjfa_         148 RGFDVIIADS  157 (276)
T ss_dssp             CCEEEEEEEC
T ss_pred             CCCCEEEEeC
Confidence            5699999863

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.94  E-value=0.00038  Score=66.14  Aligned_cols=90  Identities=13%  Similarity=0.093  Sum_probs=62.9

Q ss_pred             cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969        578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV  654 (687)
Q Consensus       578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLV---GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR  654 (687)
                      +..|.-.+...+++. .+ ++.+|||||++.|+.++.+|..+   ++.++|+|+|+++.....+          .....+
T Consensus        63 ~k~p~d~~~~~eli~-~~-KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~----------~~~~~~  130 (232)
T d2bm8a1          63 LKDPDTQAVYHDMLW-EL-RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP----------ASDMEN  130 (232)
T ss_dssp             CSCHHHHHHHHHHHH-HH-CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC----------GGGCTT
T ss_pred             ccCHHHHHHHHHHHH-Hh-CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh----------hccccc
Confidence            456776666666553 34 45799999999999999888654   4678999999987543221          112468


Q ss_pred             EEEEEcCCC---------CCCccEEEEEecCCCc
Q psy14969        655 VNIMRTLPP---------QQDASRVNISVEPQKS  679 (687)
Q Consensus       655 I~LI~GDAe---------daPFDLILVVfAP~K~  679 (687)
                      +.++.||..         ..++|.|++..+....
T Consensus       131 I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~  164 (232)
T d2bm8a1         131 ITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANT  164 (232)
T ss_dssp             EEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSH
T ss_pred             eeeeecccccHHHHHHHHhcCCCEEEEcCCcchH
Confidence            999999853         3568888887665443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.0012  Score=64.75  Aligned_cols=76  Identities=21%  Similarity=0.275  Sum_probs=59.7

Q ss_pred             ccCcHHHHHHHHHHhhhcCC------CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCcc
Q psy14969        577 YLNSPSFIASSLEPALLKLK------PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL  650 (687)
Q Consensus       577 TISaP~VvAlLLElLkedLk------pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~Va  650 (687)
                      .+..+.+...+++.+  .+.      .+..|||||.|.|.+|..|.....+ .+|++||+++.+++.-++.+.       
T Consensus        19 fL~d~~i~~~Iv~~~--~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~-------   88 (322)
T d1i4wa_          19 YLWNPTVYNKIFDKL--DLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFE-------   88 (322)
T ss_dssp             CBCCHHHHHHHHHHH--CGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTT-------
T ss_pred             ccCCHHHHHHHHHHh--cCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhcc-------
Confidence            457888999998886  332      4668999999999999999887543 389999999999998776542       


Q ss_pred             CCCcEEEEEcCCC
Q psy14969        651 DEGVVNIMRTLPP  663 (687)
Q Consensus       651 SsgRI~LI~GDAe  663 (687)
                       .+++.++.+|+-
T Consensus        89 -~~~~~ii~~D~l  100 (322)
T d1i4wa_          89 -GSPLQILKRDPY  100 (322)
T ss_dssp             -TSSCEEECSCTT
T ss_pred             -CCCcEEEeCchh
Confidence             346788888864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.00091  Score=61.24  Aligned_cols=79  Identities=15%  Similarity=0.135  Sum_probs=61.1

Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      |..-+++.|  .+.+|+.++|..+|.|..+..+.+.   .|+|+|+|.++++++.|++.   .      ..++.++++.-
T Consensus         6 ll~Evl~~l--~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~---~------~~~~~~~~~~f   71 (182)
T d1wg8a2           6 LYQEALDLL--AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL---H------LPGLTVVQGNF   71 (182)
T ss_dssp             THHHHHHHH--TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT---C------CTTEEEEESCG
T ss_pred             HHHHHHHhc--CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc---c------ccceeEeehHH
Confidence            566667777  6899999999999999999888765   46999999999999998763   1      24678888773


Q ss_pred             C----------CCCccEEEEEec
Q psy14969        663 P----------QQDASRVNISVE  675 (687)
Q Consensus       663 e----------daPFDLILVVfA  675 (687)
                      .          ...+|.|+....
T Consensus        72 ~~~~~~l~~~~~~~vdgIl~DLG   94 (182)
T d1wg8a2          72 RHLKRHLAALGVERVDGILADLG   94 (182)
T ss_dssp             GGHHHHHHHTTCSCEEEEEEECS
T ss_pred             HHHHHHHHHcCCCccCEEEEEcc
Confidence            2          234777777653

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.73  E-value=0.0029  Score=63.11  Aligned_cols=93  Identities=13%  Similarity=0.111  Sum_probs=69.4

Q ss_pred             CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCC------------cEEEEEeCCHHHHHHHHHH
Q psy14969        574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPH------------GKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~------------GrVtGIDISpeAVE~ARKN  641 (687)
                      .|+..++.+++..|++.+  .+.++.+|||-.||||.+...+.+.+...            ..++|+|+++.++..|+-+
T Consensus       141 ~G~f~TP~~Iv~~mv~ll--~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n  218 (425)
T d2okca1         141 AGQYFTPRPLIQAMVDCI--NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN  218 (425)
T ss_dssp             CGGGCCCHHHHHHHHHHH--CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             chhhccchhhhHhhheec--cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhh
Confidence            467777888999999988  67788999999999999998887654211            2489999999999999999


Q ss_pred             HHHcCCCccCCCcEEEEEcCCC----CCCccEEE
Q psy14969        642 IRKNHAHLLDEGVVNIMRTLPP----QQDASRVN  671 (687)
Q Consensus       642 LKkaG~~VaSsgRI~LI~GDAe----daPFDLIL  671 (687)
                      +.-.++.   .....+..++..    ...||+|+
T Consensus       219 ~~l~g~~---~~~~~i~~~d~l~~~~~~~fD~Ii  249 (425)
T d2okca1         219 LYLHGIG---TDRSPIVCEDSLEKEPSTLVDVIL  249 (425)
T ss_dssp             HHHTTCC---SSCCSEEECCTTTSCCSSCEEEEE
T ss_pred             hhhcCCc---cccceeecCchhhhhcccccceEE
Confidence            9887751   123445555533    34477553

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.67  E-value=0.0016  Score=64.63  Aligned_cols=78  Identities=12%  Similarity=0.012  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      ...+.+||-||-|.|..+..+.+.- +-.+|+.||+++.+++.|++.+.... ......|+.++.+|+.      ...||
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~-~~~~dprv~i~i~Da~~~l~~~~~~yD  181 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMS-CGFSHPKLDLFCGDGFEFLKNHKNEFD  181 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTS-GGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhc-cccCCCCeEEEEchHHHHHHhCCCCCC
Confidence            4567899999999999998888754 34699999999999999999876543 2345679999999963      45699


Q ss_pred             EEEEEe
Q psy14969        669 RVNISV  674 (687)
Q Consensus       669 LILVVf  674 (687)
                      +|++..
T Consensus       182 vII~D~  187 (312)
T d2b2ca1         182 VIITDS  187 (312)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999874

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.63  E-value=0.0034  Score=61.04  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-------CCCCc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-------PQQDA  667 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-------edaPF  667 (687)
                      .....+||-||-|.|..+..+.+.. +-.+|+.||+++++++.|++.+.... ......|+.++.+|+       ....|
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~-~~~~~~r~~i~~~Da~~~l~~~~~~~y  155 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVA-IGYEDPRVNLVIGDGVAFLKNAAEGSY  155 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHH-GGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhh-ccccCCCcEEEEccHHHHHhhccccCc
Confidence            3456899999999999999887764 34589999999999999999876532 124567999999994       24579


Q ss_pred             cEEEEEe
Q psy14969        668 SRVNISV  674 (687)
Q Consensus       668 DLILVVf  674 (687)
                      |+|++..
T Consensus       156 DvIi~D~  162 (290)
T d1xj5a_         156 DAVIVDS  162 (290)
T ss_dssp             EEEEECC
T ss_pred             cEEEEcC
Confidence            9998874

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0038  Score=60.62  Aligned_cols=79  Identities=13%  Similarity=-0.030  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD  668 (687)
                      ....++||-||-|.|..+..+.+.- +..+|+.+|+++.+++.|++.+.... ......|+.++.+|+.      ...||
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~-~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMA-IGYSSSKLTLHVGDGFEFMKQNQDAFD  153 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhc-cccCCCCceEEEccHHHHHhcCCCCCC
Confidence            4466899999999999998888664 35699999999999999999876532 1244679999999953      45699


Q ss_pred             EEEEEec
Q psy14969        669 RVNISVE  675 (687)
Q Consensus       669 LILVVfA  675 (687)
                      +|++...
T Consensus       154 vIi~D~~  160 (285)
T d2o07a1         154 VIITDSS  160 (285)
T ss_dssp             EEEEECC
T ss_pred             EEEEcCC
Confidence            9998743

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.37  E-value=0.008  Score=60.40  Aligned_cols=76  Identities=16%  Similarity=0.101  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCc----------cCCCcEEEEEcCCC---
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL----------LDEGVVNIMRTLPP---  663 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~V----------aSsgRI~LI~GDAe---  663 (687)
                      .+.+|||..||||..++..|..++ ...|++.|+++.+++.+++|++.++...          .....+.+...|+.   
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            678999999999999998887765 4589999999999999999999987621          11234566666642   


Q ss_pred             ---CCCccEEEEE
Q psy14969        664 ---QQDASRVNIS  673 (687)
Q Consensus       664 ---daPFDLILVV  673 (687)
                         ...||+|.+.
T Consensus       124 ~~~~~~fDvIDiD  136 (375)
T d2dula1         124 AERHRYFHFIDLD  136 (375)
T ss_dssp             HHSTTCEEEEEEC
T ss_pred             HhhcCcCCcccCC
Confidence               3458876554

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.25  E-value=0.01  Score=55.87  Aligned_cols=65  Identities=15%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--CCccEEEE
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--QDASRVNI  672 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--aPFDLILV  672 (687)
                      .....+|||||||+|.+++.+++.. |+.+++.+|.- ..++       ....    .+++.++.||.-+  ...|++++
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~-------~~~~----~~ri~~~~gd~~~~~p~~D~~~l  145 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QVIE-------NAPP----LSGIEHVGGDMFASVPQGDAMIL  145 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHT-------TCCC----CTTEEEEECCTTTCCCCEEEEEE
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hhhh-------ccCC----CCCeEEecCCcccccccceEEEE
Confidence            3556799999999999999999998 78999999983 3332       2332    5789999999532  22465544

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.00  E-value=0.0078  Score=56.53  Aligned_cols=63  Identities=21%  Similarity=0.203  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--CCCccEEEE
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--QQDASRVNI  672 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--daPFDLILV  672 (687)
                      ...+|||||+|+|.+++.+++.. |+.+++..|.- ..++       ..+.    ..|+.++.||..  ...+|++++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~-------~~~~----~~rv~~~~gD~f~~~p~aD~~~l  144 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRP-QVVE-------NLSG----SNNLTYVGGDMFTSIPNADAVLL  144 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHT-------TCCC----BTTEEEEECCTTTCCCCCSEEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhC-CCCeEEEecCH-HHHH-------hCcc----cCceEEEecCcccCCCCCcEEEE
Confidence            45689999999999999999998 68899999983 4333       2333    579999999953  234676654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=95.87  E-value=0.006  Score=58.28  Aligned_cols=74  Identities=18%  Similarity=0.249  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--------CCCcc
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--------QQDAS  668 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--------daPFD  668 (687)
                      .+.+++|||||.|.=+..+|-+. |+.+|+-+|.+..-+..-+.-..+.++     .++.++.+.++        ...||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L-----~n~~i~~~R~E~~~~~~~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL-----ENTTFCHDRAETFGQRKDVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC-----SSEEEEESCHHHHTTCTTTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCC-----CCcEEEeehhhhccccccccccce
Confidence            56799999999999999999876 688999999999999999999999987     46777776543        23588


Q ss_pred             EEEE-EecC
Q psy14969        669 RVNI-SVEP  676 (687)
Q Consensus       669 LILV-VfAP  676 (687)
                      +|+. .+++
T Consensus       144 ~v~sRAva~  152 (239)
T d1xdza_         144 IVTARAVAR  152 (239)
T ss_dssp             EEEEECCSC
T ss_pred             EEEEhhhhC
Confidence            7764 3444

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.68  E-value=0.018  Score=51.21  Aligned_cols=58  Identities=26%  Similarity=0.258  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969        581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK  644 (687)
Q Consensus       581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk  644 (687)
                      ..+..++++..   -.+|+.|||-=+|||..+.+..++..   +.+|+|++++.++.|++|+.+
T Consensus       199 ~~L~~~lI~~~---s~~gd~VlDpF~GSGTT~~aa~~~~R---~~ig~El~~~y~~~a~~Rl~~  256 (256)
T d1g60a_         199 RDLIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFVLNQ  256 (256)
T ss_dssp             HHHHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHh---CCCCCEEEECCCCchHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHcC
Confidence            35677777766   67899999999999977766555543   899999999999999999863

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=95.68  E-value=0.019  Score=55.30  Aligned_cols=77  Identities=14%  Similarity=0.177  Sum_probs=57.1

Q ss_pred             CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--Ccc--CCCcEEEEEcCCC------CCCcc
Q psy14969        599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA--HLL--DEGVVNIMRTLPP------QQDAS  668 (687)
Q Consensus       599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~--~Va--SsgRI~LI~GDAe------daPFD  668 (687)
                      .+|||.-+|.|..+..+|.+..   +|+++|.++.+....+..+..+..  ...  ...++.++.+|+.      ...||
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~---~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CEEEECCCcccHHHHHHHhCCC---EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            4899999999999999998854   899999999988877776665432  110  1348999999952      34588


Q ss_pred             EEEEEecCCCcC
Q psy14969        669 RVNISVEPQKSG  680 (687)
Q Consensus       669 LILVVfAP~K~g  680 (687)
                      +|.+  +|+-..
T Consensus       167 vIYl--DPMFp~  176 (250)
T d2oyra1         167 VVYL--DPMFPH  176 (250)
T ss_dssp             EEEE--CCCCCC
T ss_pred             EEEE--CCCCcc
Confidence            7765  565543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.02  Score=51.74  Aligned_cols=71  Identities=21%  Similarity=0.288  Sum_probs=55.8

Q ss_pred             cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----------
Q psy14969        594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----------  663 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----------  663 (687)
                      -++++.+|||+||+.|..+..+++..++.+.|+|+|..+-           ..+     ..+.++.|+..          
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-----~~~~~~~~d~~~~~~~~~~~~   82 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-----VGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-----TTEEEEESCTTSHHHHHHHHH
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-----CCceEeecccccchhhhhhhh
Confidence            3678999999999999999999988877799999997652           112     35677777754          


Q ss_pred             ---CCCccEEEEEecCCCcC
Q psy14969        664 ---QQDASRVNISVEPQKSG  680 (687)
Q Consensus       664 ---daPFDLILVVfAP~K~g  680 (687)
                         ..++|+|+...+|--.|
T Consensus        83 ~~~~~~~DlVlSD~ap~~sg  102 (180)
T d1ej0a_          83 RVGDSKVQVVMSDMAPNMSG  102 (180)
T ss_dssp             HHTTCCEEEEEECCCCCCCS
T ss_pred             hccCcceeEEEecccchhcc
Confidence               25699999988887655

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.57  E-value=0.0091  Score=54.49  Aligned_cols=62  Identities=21%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      .+.+..++++..   ..+|+.|||-=+|||..+++...+..   +.+|+|++++.++.|++|+.+...
T Consensus       236 P~~L~~rlI~~~---s~~gdiVlDpF~GSGTT~~AA~~lgR---~~Ig~El~~~y~~~a~~Rl~~~~~  297 (320)
T d1booa_         236 PAKLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFRFLDNNI  297 (320)
T ss_dssp             CTHHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             chHHHHHhhhhc---ccCCCEEEecCCCCcHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHHHhccc
Confidence            345777777765   67899999999999977766554433   899999999999999999877543

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.027  Score=57.75  Aligned_cols=72  Identities=14%  Similarity=0.132  Sum_probs=57.9

Q ss_pred             CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCC-----------------cEEEEEeCCHHHHH
Q psy14969        574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPH-----------------GKVYSLDHMEYLVN  636 (687)
Q Consensus       574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~-----------------GrVtGIDISpeAVE  636 (687)
                      .|+..++..++.+|++.+  .+.++.+|+|-.||||.+...+.+.+...                 ..++|+|+++.++.
T Consensus       143 ~GqfyTP~~Iv~~mv~ll--~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~  220 (524)
T d2ar0a1         143 AGQYFTPRPLIKTIIHLL--KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR  220 (524)
T ss_dssp             --CCCCCHHHHHHHHHHH--CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred             cchhccccchhHhhhhcc--cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHH
Confidence            477888889999999988  67888999999999999987776643211                 25899999999999


Q ss_pred             HHHHHHHHcCC
Q psy14969        637 FSKENIRKNHA  647 (687)
Q Consensus       637 ~ARKNLKkaG~  647 (687)
                      .|+-++--.+.
T Consensus       221 la~~nl~l~~~  231 (524)
T d2ar0a1         221 LALMNCLLHDI  231 (524)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHHHhhcc
Confidence            99999876664

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.17  E-value=0.032  Score=50.14  Aligned_cols=61  Identities=23%  Similarity=0.240  Sum_probs=49.9

Q ss_pred             cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969        580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH  646 (687)
Q Consensus       580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG  646 (687)
                      ...+..++++..   -.+|+.|||-=+|||..+.+..++..   +.+|+|+++..++.|++|+....
T Consensus       193 P~~L~~~~I~~~---s~~gdiVLDpF~GSGTT~~Aa~~lgR---~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         193 PAAVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             CHHHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHHHHHC-
T ss_pred             chhHHHHHHHhh---cCCCCEEEecCCCCcHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHHHHhh
Confidence            345777777765   67899999999999987777665543   89999999999999999999864

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.08  E-value=0.016  Score=53.78  Aligned_cols=54  Identities=17%  Similarity=0.102  Sum_probs=42.1

Q ss_pred             CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969        596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP  662 (687)
Q Consensus       596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA  662 (687)
                      ....+|||||||+|.+++.+++.. |+.+++++|.-+. ++       ...    ...++.++.+|-
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~-------~~~----~~~r~~~~~~d~  133 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IE-------DAP----SYPGVEHVGGDM  133 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TT-------TCC----CCTTEEEEECCT
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hh-------hcc----cCCceEEecccc
Confidence            345789999999999999999998 6899999998643 21       122    246889998884

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.79  E-value=0.033  Score=50.22  Aligned_cols=47  Identities=26%  Similarity=0.297  Sum_probs=40.7

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      .+++|++||.+|||. |.+++.+|++.+ ..+|+++|.++.-++.|++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc
Confidence            789999999999998 777888888775 56999999999999888764

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.75  E-value=0.027  Score=50.60  Aligned_cols=44  Identities=14%  Similarity=0.095  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCccHHHHH----HHHhcC---CCcEEEEEeCCHHHHHHHHH
Q psy14969        597 PGDTVLDVGTGSGYTAAC----LGYMVR---PHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAa----LArLVG---P~GrVtGIDISpeAVE~ARK  640 (687)
                      +.-+||++|||||--+-.    +.....   ..-+|+|.|+++.+++.|++
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            345999999999974433    333221   23479999999999999984

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.74  E-value=0.084  Score=45.02  Aligned_cols=45  Identities=20%  Similarity=0.224  Sum_probs=39.2

Q ss_pred             cCCCCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+| .|.+++.+++..+  ++|+++|.++.-++.|++
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHH
Confidence            68899999999998 5777888888875  699999999999888876

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.30  E-value=0.063  Score=47.24  Aligned_cols=46  Identities=17%  Similarity=0.305  Sum_probs=39.8

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|||. |.+++.+|+..+. .+|+++|.++.-.+.|++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHh
Confidence            789999999999997 8888888988763 379999999998888865

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.072  Score=45.97  Aligned_cols=45  Identities=18%  Similarity=0.203  Sum_probs=38.9

Q ss_pred             cCCCCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+| .|.+++.+|+..+  ++|+++|.+++-++.|++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK   69 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhc
Confidence            68899999999998 6778888888876  699999999998888765

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.85  E-value=0.084  Score=45.86  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=39.1

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.++..+|+..+. .+|+++|.++.-++.|++
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccchhheeccccccc-cccccccccccccccccc
Confidence            578999999999985 7888888988762 389999999999988865

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.58  E-value=0.15  Score=45.02  Aligned_cols=46  Identities=22%  Similarity=0.259  Sum_probs=40.3

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|||. |.+++.+++..+ ..+|+++|+++.-.+.|++
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHH
Confidence            688999999999998 888888999886 4589999999998877776

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=90.69  E-value=0.66  Score=45.07  Aligned_cols=107  Identities=12%  Similarity=0.007  Sum_probs=64.7

Q ss_pred             hhchhcCCCCCCHHHHHHHHhCCCccCCCCCCCCCCCCCcccc-CCcccCcHHHHHHHHHHhh-------hcCC--CCCe
Q psy14969        531 ALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLE-NCSYLNSPSFIASSLEPAL-------LKLK--PGDT  600 (687)
Q Consensus       531 vQqLRsnG~IdS~EV~qAMraVPReaFVP~gyqAYsD~pLPIG-~GqTISaP~VvAlLLElLk-------edLk--pG~R  600 (687)
                      .+.+++.|++.=.+.|+..+--|..     +|  |.. ..++| .|-.+++|++....-+.+.       ..+.  +.-.
T Consensus        11 ~~~i~~~G~i~f~~fM~~~LY~p~~-----GY--Y~~-~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~   82 (365)
T d1zkda1          11 KRLIKAAGPMPVWRYMELCLGHPEH-----GY--YVT-RDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLR   82 (365)
T ss_dssp             HHHHHHHCSEEHHHHHHHHHHCTTT-----CT--TTC-C--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEE
T ss_pred             HHHHHhcCCccHHHHHHHHcCCCCc-----cc--cCC-CCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccce
Confidence            3677888988777777765543311     22  332 33566 4678888877433322221       1122  3347


Q ss_pred             EEEEcCCccHHHHHHHHhcC------CCcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969        601 VLDVGTGSGYTAACLGYMVR------PHGKVYSLDHMEYLVNFSKENIRKN  645 (687)
Q Consensus       601 VLDIGCGTGYLTAaLArLVG------P~GrVtGIDISpeAVE~ARKNLKka  645 (687)
                      |+|+|+|+|.++.-+.+.+.      ....++-+|.++.+.+.-++++...
T Consensus        83 ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~  133 (365)
T d1zkda1          83 LIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI  133 (365)
T ss_dssp             EEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC
T ss_pred             EEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc
Confidence            99999999999987766542      2357899999999888877776653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=0.47  Score=40.54  Aligned_cols=46  Identities=22%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|+ |.+++.+++..+ ..+|+++|.++.-++.|++
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHH
Confidence            788999999999986 555566677765 3489999999999888765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.31  E-value=0.49  Score=39.99  Aligned_cols=45  Identities=20%  Similarity=0.271  Sum_probs=37.6

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+++..+  .+|+++|.+++-++.|++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhc
Confidence            689999999999985 666777787775  699999999998887764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.22  E-value=0.24  Score=43.29  Aligned_cols=46  Identities=17%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             cCCCCCeEEEEcCCccH-HHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGSGY-TAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGY-LTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|... ++..++++.+ ..+|+++|.++.-++.|++
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHH
Confidence            68999999999999644 4455677765 4589999999999988876

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.40  E-value=0.33  Score=41.35  Aligned_cols=46  Identities=20%  Similarity=0.117  Sum_probs=36.1

Q ss_pred             cCCCCCeEEEEcCCccHHH-HHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGSGYTA-ACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGYLT-AaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|.+... +.+++..+ ...|+++|.+++-++.|++
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH
Confidence            6899999999999985544 44555554 4689999999998887765

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.71  E-value=0.42  Score=40.97  Aligned_cols=45  Identities=22%  Similarity=0.217  Sum_probs=35.7

Q ss_pred             cCCCCCeEEEEcC--CccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGT--GSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGC--GTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+  |.|..+..+|+..+  .+|++++.+++-.+.+++
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccC--cccccccccccccccccc
Confidence            6889999999996  45667777788875  689999999877766653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=86.80  E-value=0.65  Score=39.61  Aligned_cols=45  Identities=24%  Similarity=0.257  Sum_probs=36.8

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+|+..+  ++++++|.+++-.+.|++
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhc
Confidence            789999999999975 777788888765  588899999887776654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.72  E-value=0.67  Score=39.92  Aligned_cols=46  Identities=20%  Similarity=0.379  Sum_probs=36.9

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      ++++|++||-+|+|. |.+++.+++..+ ...|+++|.++.-++.|++
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~   71 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ   71 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH
Confidence            688999999999985 445667777776 3478899999998888776

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.07  E-value=2.7  Score=38.40  Aligned_cols=80  Identities=13%  Similarity=0.004  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------------
Q psy14969        597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------------  664 (687)
Q Consensus       597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------------  664 (687)
                      .++.||-.|+++|.-.+...+++..+++|+..+.+++.++.+.+.++..+.    .+++..+..|..+            
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY----PGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----SSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEEccCCCHHHHHHHHHHHH
Confidence            578999999887754443333333457999999999999999999998875    4577888888653            


Q ss_pred             ---CCccEEEEEecCCCcC
Q psy14969        665 ---QDASRVNISVEPQKSG  680 (687)
Q Consensus       665 ---aPFDLILVVfAP~K~g  680 (687)
                         ...|.++-.+.....+
T Consensus        85 ~~~g~iD~lVnnAg~~~~~  103 (257)
T d1xg5a_          85 SQHSGVDICINNAGLARPD  103 (257)
T ss_dssp             HHHCCCSEEEECCCCCCCC
T ss_pred             HhcCCCCEEEecccccCCC
Confidence               4578766555444433

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.34  E-value=0.77  Score=38.76  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=36.3

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+++..+ ...|+++|.++.-.+.|++
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~   71 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE   71 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHH
Confidence            689999999998873 445566677765 4589999999998888775

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.52  E-value=0.83  Score=39.88  Aligned_cols=47  Identities=17%  Similarity=0.133  Sum_probs=37.7

Q ss_pred             cCCCCCeEEEEcCCccH-HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGSGY-TAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGY-LTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      .+++|+.||=+|+|... ++..+++..+ ..+|+++|.+++-++.|++.
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc
Confidence            68899999999999644 4455566654 45999999999999988875

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=84.09  E-value=1.1  Score=44.75  Aligned_cols=53  Identities=13%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             CCCCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969        595 LKPGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHA  647 (687)
Q Consensus       595 LkpG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~  647 (687)
                      +.++..++|||+-.|..+..++.... ..++|+++|.++...+..+++++.+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            56778999999999999988876653 236999999999999999999987653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.57  E-value=2  Score=36.57  Aligned_cols=46  Identities=30%  Similarity=0.353  Sum_probs=35.5

Q ss_pred             cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .+++|++||-+|+|. |.+++.+++..+ ...|+++|.+++-++.+++
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhh
Confidence            468999999999986 444466677665 3589999999988777765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.28  E-value=2.1  Score=36.02  Aligned_cols=46  Identities=30%  Similarity=0.372  Sum_probs=36.6

Q ss_pred             cCCCCCeEEEEcC-C-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGT-G-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE  640 (687)
Q Consensus       594 dLkpG~RVLDIGC-G-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK  640 (687)
                      .++++++||-+|+ | .|.+++.+++..+ ...|+++|.+++-.+.+++
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~   71 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR   71 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHH
Confidence            6889999999996 3 4566666777665 3589999999998888775

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=80.96  E-value=1.5  Score=37.29  Aligned_cols=47  Identities=17%  Similarity=0.081  Sum_probs=36.6

Q ss_pred             cCCCCCeEEEEcCCccH-HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969        594 KLKPGDTVLDVGTGSGY-TAACLGYMVRPHGKVYSLDHMEYLVNFSKEN  641 (687)
Q Consensus       594 dLkpG~RVLDIGCGTGY-LTAaLArLVGP~GrVtGIDISpeAVE~ARKN  641 (687)
                      .+++|++||-+|+|.+. .++.+++..+ ..+|+++|.+++-.+.|++.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh
Confidence            68999999999997544 4455555554 46999999999998887664