Psyllid ID: psy15017

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISRI
Secondary Structure (PSIPRED)
cEEEccccHHHHHccccEEEEEEccccEEEEccccEEEccEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccHHHHHccccEEEEEcccccEEEEcccEEEEccEEEcccccHHHHHHHHcHHHHHHHcccccEEEEEEccccccHHHHHccccccccccc
Coil and Loop (DISEMBL)
MCKIRPQSAREVIDMCRvctfvtpgepqvtlgadksftfdyVFDMADVQTTIYELCAASLVAGSLEGYNATILAYgqtgsgktytmgtgtfspisri
Flexible Loop (DISEMBL)
mckirpqsarEVIDMCRVCTFvtpgepqvtlgaDKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAygqtgsgktytmgtgtfspisri
Low Complexity Region (SEG)
MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISRI
Disordered region (IsUnstruct)
**********EVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYT************
Disordered Region (DISOPRED)
MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM***********
Disordered Region (DISEMBL)
********AREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISRI
Disordered Region (DISPRO)
MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTG********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISRI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
Q9QXL2	1672	Kinesin-like protein KIF2	yes	N/A	0.896	0.052	0.655	3e-30
Q9QXL1	1668	Kinesin-like protein KIF2	no	N/A	0.896	0.052	0.632	5e-30
O75037	1637	Kinesin-like protein KIF2	yes	N/A	0.896	0.053	0.632	5e-30
Q7Z4S6	1674	Kinesin-like protein KIF2	no	N/A	0.896	0.051	0.655	6e-30
O95239	1232	Chromosome-associated kin	no	N/A	0.876	0.068	0.517	9e-23
P33174	1231	Chromosome-associated kin	no	N/A	0.876	0.069	0.517	1e-22
Q90640	1225	Chromosome-associated kin	no	N/A	0.917	0.072	0.511	1e-22
Q2VIQ3	1234	Chromosome-associated kin	no	N/A	0.876	0.068	0.505	3e-21
Q91784	1226	Chromosome-associated kin	N/A	N/A	0.876	0.069	0.517	5e-21
Q86VH2	1401	Kinesin-like protein KIF2	no	N/A	0.948	0.065	0.467	1e-19

>sp|Q9QXL2|KI21A_MOUSE Kinesin-like protein KIF21A OS=Mus musculus GN=Kif21a PE=1 SV=2

 Score =  130 bits (326), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/87 (65%), Positives = 66/87 (75%)

Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           +IRPQ A+E I+ C +CT VTPGEPQV LG DK+FTFDYVFD+   Q  IY  C   L+ 
Sbjct: 15  RIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYTQCIEKLIE 74

Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTG 89
           G  EGYNAT+ AYGQTG+GKTYTMGTG
Sbjct: 75  GCFEGYNATVFAYGQTGAGKTYTMGTG 101

Microtubule-binding motor protein probably involved in neuronal axonal transport. In vitro, has a plus-end directed motor activity.
Mus musculus (taxid: 10090)

>sp|Q9QXL1|KI21B_MOUSE Kinesin-like protein KIF21B OS=Mus musculus GN=Kif21b PE=1 SV=2

 Score =  129 bits (324), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/87 (63%), Positives = 68/87 (78%)

Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           +IRPQ ++E I+ C +CT VTPGEPQV LG DK+FT+D+VFD+   Q  IY  C + L+ 
Sbjct: 14  RIRPQLSKEKIEGCHICTSVTPGEPQVLLGKDKAFTYDFVFDLDTWQEQIYSTCVSKLIE 73

Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTG 89
           G  EGYNAT+LAYGQTG+GKTYTMGTG
Sbjct: 74  GCFEGYNATVLAYGQTGAGKTYTMGTG 100

Microtubule-binding motor protein probably involved in neuronal dendritic transport. In vitro, has a plus-end directed motor activity.

Mus musculus (taxid: 10090)

>sp|O75037|KI21B_HUMAN Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2

 Score =  129 bits (324), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/87 (63%), Positives = 68/87 (78%)

Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           +IRPQ ++E I+ C +CT VTPGEPQV LG DK+FT+D+VFD+   Q  IY  C + L+ 
Sbjct: 14  RIRPQLSKEKIEGCHICTSVTPGEPQVLLGKDKAFTYDFVFDLDTWQEQIYSTCVSKLIE 73

Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTG 89
           G  EGYNAT+LAYGQTG+GKTYTMGTG
Sbjct: 74  GCFEGYNATVLAYGQTGAGKTYTMGTG 100

Microtubule-binding motor protein probably involved in neuronal dendritic transport. In vitro, has a plus-end directed motor activity.

Homo sapiens (taxid: 9606)

>sp|Q7Z4S6|KI21A_HUMAN Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2

 Score =  129 bits (323), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/87 (65%), Positives = 66/87 (75%)

Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           +IRPQ A+E I+ C +CT VTPGEPQV LG DK+FTFDYVFD+   Q  IY  C   L+ 
Sbjct: 15  RIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYIQCIEKLIE 74

Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTG 89
           G  EGYNAT+ AYGQTG+GKTYTMGTG
Sbjct: 75  GCFEGYNATVFAYGQTGAGKTYTMGTG 101

Microtubule-binding motor protein probably involved in neuronal axonal transport. In vitro, has a plus-end directed motor activity.

Homo sapiens (taxid: 9606)

>sp|O95239|KIF4A_HUMAN Chromosome-associated kinesin KIF4A OS=Homo sapiens GN=KIF4A PE=1 SV=3

 Score =  105 bits (262), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 60/85 (70%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          + RP   +E+ + C++C    PGEPQV +G DKSFT+D+VFD +  Q  ++    A L+ 
Sbjct: 15 RCRPLVPKEISEGCQMCLSFVPGEPQVVVGTDKSFTYDFVFDPSTEQEEVFNTAVAPLIK 74

Query: 63 GSLEGYNATILAYGQTGSGKTYTMG 87
          G  +GYNAT+LAYGQTGSGKTY+MG
Sbjct: 75 GVFKGYNATVLAYGQTGSGKTYSMG 99

Motor protein that translocates PRC1 to the plus ends of interdigitating spindle microtubules during the metaphase to anaphase transition, an essential step for the formation of an organized central spindle midzone and midbody and for successful cytokinesis. May play a role in mitotic chromosomal positioning and bipolar spindle stabilization.

Homo sapiens (taxid: 9606)

>sp|P33174|KIF4_MOUSE Chromosome-associated kinesin KIF4 OS=Mus musculus GN=Kif4 PE=2 SV=3

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 60/85 (70%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          + RP  ++E+ + C+ C    PGEPQV +G DKSFT+D+VFD +  Q  ++    A L+ 
Sbjct: 15 RCRPLVSKEIKEGCQTCLSFVPGEPQVVVGNDKSFTYDFVFDPSTEQEEVFNTAVAPLIK 74

Query: 63 GSLEGYNATILAYGQTGSGKTYTMG 87
          G  +GYNAT+LAYGQTGSGKTY+MG
Sbjct: 75 GVFKGYNATVLAYGQTGSGKTYSMG 99

Required for mitotic chromosomal positioning and bipolar spindle stabilization.

Mus musculus (taxid: 10090)

>sp|Q90640|KIF4_CHICK Chromosome-associated kinesin KIF4 OS=Gallus gallus GN=KIF4 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 64/90 (71%), Gaps = 1/90 (1%)

Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           + RP   +E  + C++C    PGEPQV +G+DK+FT+DYVFD +  Q  ++    A L+ 
Sbjct: 15  RCRPLVPKETSEGCQMCLSFVPGEPQVIVGSDKAFTYDYVFDPSVEQEEVFNTAVAPLIR 74

Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTGTFS 92
           G  +GYNAT+LAYGQTGSGKTY+MG GT++
Sbjct: 75  GIFKGYNATVLAYGQTGSGKTYSMG-GTYT 103

Required for mitotic chromosomal positioning and bipolar spindle stabilization.

Gallus gallus (taxid: 9031)

>sp|Q2VIQ3|KIF4B_HUMAN Chromosome-associated kinesin KIF4B OS=Homo sapiens GN=KIF4B PE=2 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/85 (50%), Positives = 58/85 (68%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          + RP   +E+ + C++C    PGE QV +G DKSFT+D+VFD    Q  ++    A L+ 
Sbjct: 15 RCRPLVPKEISEGCQMCLSFVPGETQVVVGTDKSFTYDFVFDPCTEQEEVFNKAVAPLIK 74

Query: 63 GSLEGYNATILAYGQTGSGKTYTMG 87
          G  +GYNAT+LAYGQTGSGKTY+MG
Sbjct: 75 GIFKGYNATVLAYGQTGSGKTYSMG 99

Motor protein that translocates PRC1 to the plus ends of interdigitating spindle microtubules during the metaphase to anaphase transition, an essential step for the formation of an organized central spindle midzone and midbody and for successful cytokinesis. May play a role in mitotic chromosomal positioning and bipolar spindle stabilization.

Homo sapiens (taxid: 9606)

>sp|Q91784|KIF4_XENLA Chromosome-associated kinesin KIF4 OS=Xenopus laevis GN=kif4 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 58/85 (68%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          + RP   +E  + C++C    PGE QV +G +KSFT+DYVFD +  Q  +Y    A L+ 
Sbjct: 14 RCRPLVPKENNEGCKMCLTFVPGEQQVIVGTEKSFTYDYVFDPSAEQEEVYNSAVAPLIK 73

Query: 63 GSLEGYNATILAYGQTGSGKTYTMG 87
          G  +GYNAT+LAYGQTGSGKTY+MG
Sbjct: 74 GLFKGYNATVLAYGQTGSGKTYSMG 98

Required for mitotic chromosomal positioning and bipolar spindle stabilization.

Xenopus laevis (taxid: 8355)

>sp|Q86VH2|KIF27_HUMAN Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF27 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/92 (46%), Positives = 56/92 (60%)

Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           +IRP   +E +   +VC  V P   QV +G D+ FTFD+VF     Q  +Y  C   LV 
Sbjct: 11  RIRPLLCKEALHNHQVCVRVIPNSQQVIIGRDRVFTFDFVFGKNSTQDEVYNTCIKPLVL 70

Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTGTFSPI 94
             +EGYNAT+ AYGQTGSGKTYT+G G  + +
Sbjct: 71  SLIEGYNATVFAYGQTGSGKTYTIGGGHIASV 102

Plays an essential role in motile ciliogenesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
328701148	1495	PREDICTED: kinesin-like protein KIF21A-l	0.896	0.058	0.781	1e-35
328701146	1481	PREDICTED: kinesin-like protein KIF21A-l	0.896	0.058	0.781	1e-35
158297459	1033	AGAP007815-PA [Anopheles gambiae str. PE	0.896	0.084	0.735	8e-34
383863669	1484	PREDICTED: kinesin-like protein KIF21A-l	0.896	0.058	0.758	8e-34
383863667	1486	PREDICTED: kinesin-like protein KIF21A-l	0.896	0.058	0.758	8e-34
350421140	1486	PREDICTED: kinesin-like protein KIF21A-l	0.896	0.058	0.747	2e-33
350421138	1484	PREDICTED: kinesin-like protein KIF21A-l	0.896	0.058	0.747	2e-33
340713889	1484	PREDICTED: kinesin-like protein KIF21A-l	0.896	0.058	0.747	2e-33
340713887	1486	PREDICTED: kinesin-like protein KIF21A-l	0.896	0.058	0.747	2e-33
345495320	1504	PREDICTED: kinesin-like protein KIF21B i	0.896	0.057	0.735	2e-33

>gi|328701148|ref|XP_003241507.1| PREDICTED: kinesin-like protein KIF21A-like isoform 3 [Acyrthosiphon pisum] gi|328701150|ref|XP_001949752.2| PREDICTED: kinesin-like protein KIF21A-like isoform 1 [Acyrthosiphon pisum]

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/87 (78%), Positives = 79/87 (90%)

Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           +IRPQ AREVID CR+CT VTPGEPQVTLG+DKSFT+D+VFD  + Q T+YE CA+SLVA
Sbjct: 15  RIRPQIAREVIDGCRICTNVTPGEPQVTLGSDKSFTYDFVFDTHENQQTLYENCASSLVA 74

Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTG 89
           G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 75  GALQGYNATVLAYGQTGSGKTYTMGTG 101

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701146|ref|XP_003241506.1| PREDICTED: kinesin-like protein KIF21A-like isoform 2 [Acyrthosiphon pisum]

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/87 (78%), Positives = 79/87 (90%)

Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           +IRPQ AREVID CR+CT VTPGEPQVTLG+DKSFT+D+VFD  + Q T+YE CA+SLVA
Sbjct: 15  RIRPQIAREVIDGCRICTNVTPGEPQVTLGSDKSFTYDFVFDTHENQQTLYENCASSLVA 74

Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTG 89
           G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 75  GALQGYNATVLAYGQTGSGKTYTMGTG 101

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297459|ref|XP_317685.4| AGAP007815-PA [Anopheles gambiae str. PEST] gi|157015205|gb|EAA12442.5| AGAP007815-PA [Anopheles gambiae str. PEST]

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/87 (73%), Positives = 74/87 (85%)

Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           +IRPQ  RE+IDMCRVCT VTPGEPQV LG+DK+FTFDYVFDM+  Q ++Y  C   LV 
Sbjct: 17  RIRPQIPRELIDMCRVCTQVTPGEPQVLLGSDKAFTFDYVFDMSTTQVSVYNNCIEKLVD 76

Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTG 89
           G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 77  GALQGYNATVLAYGQTGSGKTYTMGTG 103

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863669|ref|XP_003707302.1| PREDICTED: kinesin-like protein KIF21A-like isoform 2 [Megachile rotundata]

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 66/87 (75%), Positives = 73/87 (83%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          +IRPQ AREVIDMCR+CT V PGEPQV LG DK+FT+DYVFD    Q TIYE C A LV 
Sbjct: 12 RIRPQVAREVIDMCRICTQVPPGEPQVFLGPDKAFTYDYVFDTCVGQCTIYETCVARLVE 71

Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
          G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 72 GALDGYNATVLAYGQTGSGKTYTMGTG 98

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863667|ref|XP_003707301.1| PREDICTED: kinesin-like protein KIF21A-like isoform 1 [Megachile rotundata]

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 66/87 (75%), Positives = 73/87 (83%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          +IRPQ AREVIDMCR+CT V PGEPQV LG DK+FT+DYVFD    Q TIYE C A LV 
Sbjct: 12 RIRPQVAREVIDMCRICTQVPPGEPQVFLGPDKAFTYDYVFDTCVGQCTIYETCVARLVE 71

Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
          G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 72 GALDGYNATVLAYGQTGSGKTYTMGTG 98

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421140|ref|XP_003492746.1| PREDICTED: kinesin-like protein KIF21A-like isoform 2 [Bombus impatiens]

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 74/87 (85%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          +IRPQ AREVIDMCR+CT V PGEPQV LG DK+FT+DYVFD    Q+TI+E C A LV 
Sbjct: 12 RIRPQVAREVIDMCRICTQVPPGEPQVFLGPDKAFTYDYVFDTGVGQSTIHETCVARLVE 71

Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
          G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 72 GALDGYNATVLAYGQTGSGKTYTMGTG 98

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421138|ref|XP_003492745.1| PREDICTED: kinesin-like protein KIF21A-like isoform 1 [Bombus impatiens]

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 74/87 (85%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          +IRPQ AREVIDMCR+CT V PGEPQV LG DK+FT+DYVFD    Q+TI+E C A LV 
Sbjct: 12 RIRPQVAREVIDMCRICTQVPPGEPQVFLGPDKAFTYDYVFDTGVGQSTIHETCVARLVE 71

Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
          G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 72 GALDGYNATVLAYGQTGSGKTYTMGTG 98

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713889|ref|XP_003395467.1| PREDICTED: kinesin-like protein KIF21A-like isoform 2 [Bombus terrestris]

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 74/87 (85%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          +IRPQ AREVIDMCR+CT V PGEPQV LG DK+FT+DYVFD    Q+TI+E C A LV 
Sbjct: 12 RIRPQVAREVIDMCRICTQVPPGEPQVFLGPDKAFTYDYVFDTGVGQSTIHETCVARLVE 71

Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
          G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 72 GALDGYNATVLAYGQTGSGKTYTMGTG 98

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713887|ref|XP_003395466.1| PREDICTED: kinesin-like protein KIF21A-like isoform 1 [Bombus terrestris]

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 74/87 (85%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          +IRPQ AREVIDMCR+CT V PGEPQV LG DK+FT+DYVFD    Q+TI+E C A LV 
Sbjct: 12 RIRPQVAREVIDMCRICTQVPPGEPQVFLGPDKAFTYDYVFDTGVGQSTIHETCVARLVE 71

Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
          G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 72 GALDGYNATVLAYGQTGSGKTYTMGTG 98

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495320|ref|XP_003427480.1| PREDICTED: kinesin-like protein KIF21B isoform 2 [Nasonia vitripennis]

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/87 (73%), Positives = 74/87 (85%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          +IRPQ AREVIDMCR+CT V PGEPQV LG DK+FT+DYVFD    Q++IY+ C A LV 
Sbjct: 12 RIRPQVAREVIDMCRICTQVPPGEPQVFLGPDKAFTYDYVFDTNSEQSSIYDTCVARLVD 71

Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
          G+L+GYNAT+LAYGQTGSGKTYTMGTG
Sbjct: 72 GALDGYNATVLAYGQTGSGKTYTMGTG 98

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
FB|FBgn0032243	1048	Klp31E "Kinesin-like protein a	0.896	0.083	0.689	6.2e-28
RGD|1305126	556	Kif21a "kinesin family member	0.896	0.156	0.655	3.3e-27
UNIPROTKB|F1PRN6	1663	KIF21A "Uncharacterized protei	0.907	0.052	0.659	3.3e-27
UNIPROTKB|F1PPT2	1677	KIF21A "Uncharacterized protei	0.907	0.052	0.659	3.4e-27
UNIPROTKB|F1NU29	1638	KIF21B "Uncharacterized protei	0.969	0.057	0.617	5.4e-27
ZFIN|ZDB-GENE-110411-237	1647	kif21a "kinesin family member	0.896	0.052	0.666	6.9e-27
UNIPROTKB|F5H0C3	1621	KIF21A "Kinesin-like protein K	0.896	0.053	0.655	2.1e-26
UNIPROTKB|F5H219	1637	KIF21A "Kinesin-like protein K	0.896	0.053	0.655	2.2e-26
UNIPROTKB|Q7Z4S6	1674	KIF21A "Kinesin-like protein K	0.896	0.051	0.655	2.3e-26
UNIPROTKB|F8WCP6	1675	KIF21A "Kinesin-like protein K	0.896	0.051	0.655	2.3e-26

FB|FBgn0032243 Klp31E "Kinesin-like protein at 31E" [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 6.2e-28, P = 6.2e-28
 Identities = 60/87 (68%), Positives = 70/87 (80%)

Query:     3 KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
             +IRPQ++RE+IDMCR+CT VT GEPQ+ LG+DK+FTFDYVFD    Q  IY  C   LV 
Sbjct:    19 RIRPQNSRELIDMCRICTTVTLGEPQIFLGSDKAFTFDYVFDTNSNQCDIYSDCVEKLVD 78

Query:    63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
              +L GYNAT+LAYGQTGSGKTYTMGTG
Sbjct:    79 STLHGYNATVLAYGQTGSGKTYTMGTG 105

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0005871 "kinesin complex" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0003774 "motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

RGD|1305126 Kif21a "kinesin family member 21A" [Rattus norvegicus (taxid:10116)]

 Score = 311 (114.5 bits), Expect = 3.3e-27, P = 3.3e-27
 Identities = 57/87 (65%), Positives = 66/87 (75%)

Query:     3 KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
             +IRPQ A+E I+ C +CT VTPGEPQV LG DK+FTFDYVFD+   Q  IY  C   L+ 
Sbjct:    15 RIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYTQCIEKLIE 74

Query:    63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
             G  EGYNAT+ AYGQTG+GKTYTMGTG
Sbjct:    75 GCFEGYNATVFAYGQTGAGKTYTMGTG 101

GO:0003674 "molecular_function" evidence=ND

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PRN6 KIF21A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 320 (117.7 bits), Expect = 3.3e-27, P = 3.3e-27
 Identities = 58/88 (65%), Positives = 67/88 (76%)

Query:     2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLV 61
             C+IRPQ A+E I+ C +CT VTPGEPQV LG DK+FTFDYVFD+   Q  IY  C   L+
Sbjct:     3 CRIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYTQCIEKLI 62

Query:    62 AGSLEGYNATILAYGQTGSGKTYTMGTG 89
              G  EGYNAT+ AYGQTG+GKTYTMGTG
Sbjct:    63 EGCFEGYNATVFAYGQTGAGKTYTMGTG 90

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1PPT2 KIF21A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 320 (117.7 bits), Expect = 3.4e-27, P = 3.4e-27
 Identities = 58/88 (65%), Positives = 67/88 (76%)

Query:     2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLV 61
             C+IRPQ A+E I+ C +CT VTPGEPQV LG DK+FTFDYVFD+   Q  IY  C   L+
Sbjct:    14 CRIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYTQCIEKLI 73

Query:    62 AGSLEGYNATILAYGQTGSGKTYTMGTG 89
              G  EGYNAT+ AYGQTG+GKTYTMGTG
Sbjct:    74 EGCFEGYNATVFAYGQTGAGKTYTMGTG 101

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1NU29 KIF21B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 318 (117.0 bits), Expect = 5.4e-27, P = 5.4e-27
 Identities = 58/94 (61%), Positives = 70/94 (74%)

Query:     2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLV 61
             C+IRPQ ++E I+ C +CT VTPGEPQV LG DK+FT+D+VFD+   Q  IY  C   L+
Sbjct:    10 CRIRPQLSKEKIEGCHICTSVTPGEPQVLLGKDKAFTYDFVFDLDTWQEQIYTTCVGKLI 69

Query:    62 AGSLEGYNATILAYGQTGSGKTYTMGTGTFSPIS 95
              G  EGYNAT+LAYGQTG+GKTYTMGTG    IS
Sbjct:    70 EGCFEGYNATVLAYGQTGAGKTYTMGTGFDMSIS 103

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

ZFIN|ZDB-GENE-110411-237 kif21a "kinesin family member 21A" [Danio rerio (taxid:7955)]

 Score = 317 (116.6 bits), Expect = 6.9e-27, P = 6.9e-27
 Identities = 58/87 (66%), Positives = 65/87 (74%)

Query:     3 KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
             +IRPQ A+E I+ C +CTFV P EPQV LG DK+FT+DYVFDM   Q  IY  C   L+ 
Sbjct:     1 RIRPQLAKEKIEGCHICTFVMPDEPQVVLGKDKAFTYDYVFDMDSTQDNIYSNCTEKLIE 60

Query:    63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
             G  EGYNATI AYGQTGSGKTYTMGTG
Sbjct:    61 GCFEGYNATIFAYGQTGSGKTYTMGTG 87

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F5H0C3 KIF21A "Kinesin-like protein KIF21A" [Homo sapiens (taxid:9606)]

 Score = 309 (113.8 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
 Identities = 57/87 (65%), Positives = 66/87 (75%)

Query:     3 KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
             +IRPQ A+E I+ C +CT VTPGEPQV LG DK+FTFDYVFD+   Q  IY  C   L+ 
Sbjct:    15 RIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYIQCIEKLIE 74

Query:    63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
             G  EGYNAT+ AYGQTG+GKTYTMGTG
Sbjct:    75 GCFEGYNATVFAYGQTGAGKTYTMGTG 101

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F5H219 KIF21A "Kinesin-like protein KIF21A" [Homo sapiens (taxid:9606)]

 Score = 309 (113.8 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
 Identities = 57/87 (65%), Positives = 66/87 (75%)

Query:     3 KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
             +IRPQ A+E I+ C +CT VTPGEPQV LG DK+FTFDYVFD+   Q  IY  C   L+ 
Sbjct:    15 RIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYIQCIEKLIE 74

Query:    63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
             G  EGYNAT+ AYGQTG+GKTYTMGTG
Sbjct:    75 GCFEGYNATVFAYGQTGAGKTYTMGTG 101

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q7Z4S6 KIF21A "Kinesin-like protein KIF21A" [Homo sapiens (taxid:9606)]

 Score = 309 (113.8 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
 Identities = 57/87 (65%), Positives = 66/87 (75%)

Query:     3 KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
             +IRPQ A+E I+ C +CT VTPGEPQV LG DK+FTFDYVFD+   Q  IY  C   L+ 
Sbjct:    15 RIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYIQCIEKLIE 74

Query:    63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
             G  EGYNAT+ AYGQTG+GKTYTMGTG
Sbjct:    75 GCFEGYNATVFAYGQTGAGKTYTMGTG 101

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F8WCP6 KIF21A "Kinesin-like protein KIF21A" [Homo sapiens (taxid:9606)]

 Score = 309 (113.8 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
 Identities = 57/87 (65%), Positives = 66/87 (75%)

Query:     3 KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
             +IRPQ A+E I+ C +CT VTPGEPQV LG DK+FTFDYVFD+   Q  IY  C   L+ 
Sbjct:    15 RIRPQLAKEKIEGCHICTSVTPGEPQVFLGKDKAFTFDYVFDIDSQQEQIYIQCIEKLIE 74

Query:    63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
             G  EGYNAT+ AYGQTG+GKTYTMGTG
Sbjct:    75 GCFEGYNATVFAYGQTGAGKTYTMGTG 101

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QXL2	KI21A_MOUSE	No assigned EC number	0.6551	0.8969	0.0520	yes	N/A
P17120	BIMC_EMENI	No assigned EC number	0.5555	0.5567	0.0456	yes	N/A
Q6S003	KIF8_DICDI	No assigned EC number	0.5057	0.8865	0.0459	yes	N/A
O75037	KI21B_HUMAN	No assigned EC number	0.6321	0.8969	0.0531	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	97
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	1e-45
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	7e-30
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	2e-28
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	6e-26
cd00106	328	cd00106, KISc, Kinesin motor domain	3e-24
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	5e-24
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	8e-21
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	1e-20
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	4e-20
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	3e-19
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	3e-19
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	3e-17
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	9e-17
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	2e-16
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	1e-15
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	5e-15
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	3e-12
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	7e-11
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	1e-09

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score =  148 bits (377), Expect = 1e-45
 Identities = 55/87 (63%), Positives = 66/87 (75%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
          ++RP   +E+++ C+VC  V PGEPQVT+G DKSFTFDYVFD +  Q  +Y  C A LV 
Sbjct: 8  RVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVD 67

Query: 63 GSLEGYNATILAYGQTGSGKTYTMGTG 89
          G  EGYNAT+LAYGQTGSGKTYTMGT 
Sbjct: 68 GLFEGYNATVLAYGQTGSGKTYTMGTA 94

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  108 bits (271), Expect = 7e-30
 Identities = 39/93 (41%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 2  CKIRPQSAREVIDMCRVCTFVTPGEPQVT-------LGADKSFTFDYVFDMADVQTTIYE 54
           ++RP + RE                +            +K FTFD VFD    Q  ++E
Sbjct: 6  VRVRPLNKREKSRKSPSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKVFDATASQEDVFE 65

Query: 55 LCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
            AA LV   LEGYNATI AYGQTGSGKTYTM 
Sbjct: 66 ETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMI 98

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =  103 bits (260), Expect = 2e-28
 Identities = 40/94 (42%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 4  IRPQSAREVIDMCRVCTFVTPGEPQVTL-------GADKSFTFDYVFDMADVQTTIYELC 56
          +RP + RE          V   + +          G +K+FTFD VFD    Q  +YE  
Sbjct: 2  VRPLNEREKSRGSSDIVNVDETDSEDKESVVITNKGREKTFTFDRVFDPEATQEFVYEET 61

Query: 57 AASLVAGSLEGYNATILAYGQTGSGKTYTMGTGT 90
          A  LV   LEGYN TI AYGQTGSGKTYTM    
Sbjct: 62 AKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGDP 95

Length = 326

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score = 97.4 bits (243), Expect = 6e-26
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 1  MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGAD---KSFTFDYVFDMADVQTTIYELCA 57
          +C+ RP + +E +   +      PGE  V++      K+F+FD VF     Q  +Y   A
Sbjct: 7  VCRFRPLNEKEELRGSKSIVKF-PGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVA 65

Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            +V   L GYN TI AYGQTGSGKTYTM
Sbjct: 66 KPIVDDVLNGYNGTIFAYGQTGSGKTYTM 94

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score = 92.7 bits (231), Expect = 3e-24
 Identities = 45/93 (48%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 1  MCKIRPQSAREVIDMCRVCTF-----VTPGEPQVTLGA-DKSFTFDYVFDMADVQTTIYE 54
          + +IRP + RE        T      VT   P+    A  KSFTFD+VFD    Q  +YE
Sbjct: 5  VVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYE 64

Query: 55 LCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
            A  LV   LEGYN TI AYGQTGSGKTYTM 
Sbjct: 65 TTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMF 97

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score = 92.5 bits (230), Expect = 5e-24
 Identities = 38/95 (40%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------GADKSFTFDYVFDMADVQTTI 52
           + + RP + RE  +       V     QVT+           K FTFD V+D    Q  +
Sbjct: 6   VVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDV 65

Query: 53  YELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
           Y   A  LV   LEGYN TI AYGQTG+GKT+TM 
Sbjct: 66  YNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTME 100

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 83.5 bits (207), Expect = 8e-21
 Identities = 29/52 (55%), Positives = 34/52 (65%)

Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
          +SFTFD VF        +YE  A  +V  +LEGYN TI AYGQT SGKT+TM
Sbjct: 40 QSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTM 91

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 83.1 bits (206), Expect = 1e-20
 Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 34  DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGT 90
           +  ++FD VFD    Q  +YE     LV G L GYNAT+ AYG TG+GKT+TM  GT
Sbjct: 53  ELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTM-LGT 108

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score = 81.8 bits (203), Expect = 4e-20
 Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 2  CKIRPQSAREVIDMCRVCTFVTPGEPQVTL------GADKSFTFDYVFDMADVQTTIYEL 55
          C++RP    E  +   V +F  P E   T+      G  KSF+FD VFD    Q  ++E 
Sbjct: 8  CRVRPLLPSESTEYSSVISF--PDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE 65

Query: 56 CAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            + LV  +L+GYN  I AYGQTGSGKTYTM
Sbjct: 66 -VSPLVQSALDGYNVCIFAYGQTGSGKTYTM 95

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score = 79.7 bits (197), Expect = 3e-19
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 15/99 (15%)

Query: 3   KIRPQSARE-------VIDM-CRVCTFVTPGEPQVTLGADKSFTFDYVFDMAD------- 47
           ++RP ++RE       ++ M  +V T   P     T    KSF+FD+ +   D       
Sbjct: 8   RVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYA 67

Query: 48  VQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            Q  ++E     L+  + EGYN  + AYGQTGSGK+YTM
Sbjct: 68  SQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTM 106

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 79.6 bits (197), Expect = 3e-19
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTL-------GADKSFTFDYVFDMADVQTTIYEL 55
          + RP+++RE  +   V   V+    ++ +        + K++TFD VF     Q  +Y  
Sbjct: 9  RCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQ 68

Query: 56 CAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            + ++   L GYN TI AYGQTG+GKTYTM
Sbjct: 69 VVSPILDEVLMGYNCTIFAYGQTGTGKTYTM 99

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score = 74.1 bits (182), Expect = 3e-17
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 3  KIRPQSAREVIDMCRVCTFVTPGEPQVTLG-ADKSFTFDYVFDMADVQTTIYELCAASLV 61
          +IRP +  E       C      +  V      + FTFD+V D    Q  +++     LV
Sbjct: 8  RIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLV 67

Query: 62 AGSLEGYNATILAYGQTGSGKTYTM 86
             L GYN +I AYGQTGSGKTYTM
Sbjct: 68 EDCLSGYNGSIFAYGQTGSGKTYTM 92

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 73.2 bits (180), Expect = 9e-17
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 16/98 (16%)

Query: 2   CKIRPQSAREVIDMCRVCTFVTPGEP--QVTLGADKS-----------FTFDYVFDMADV 48
              R +   + +   +    + PGE   ++   + KS           + FD VF  +  
Sbjct: 13  LSSRNE---KSVSDIKSTIRIIPGELGERLINTSKKSHVSLEKSKEGTYAFDKVFGPSAT 69

Query: 49  QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           Q  +YE     L+   L GYN T+ AYGQTGSGKTYTM
Sbjct: 70  QEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTM 107

Length = 568

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 3/61 (4%)

Query: 34  DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM--GTGTF 91
           D SF FD VF  A  Q  +YE  A  +V  +L+GYN TI AYGQTG+GKT+TM  GT ++
Sbjct: 47  DFSFKFDGVFHNAS-QEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESY 105

Query: 92  S 92
            
Sbjct: 106 K 106

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 27/52 (51%), Positives = 30/52 (57%)

Query: 36  SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
           +F FDYVFD A     +Y      L+    EG  AT  AYGQTGSGKTYTM 
Sbjct: 52  TFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTML 103

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 68.4 bits (167), Expect = 5e-15
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           ++FTFD + D    Q  I++L  A LV   L G+N+++ AYGQTGSGKTYTM
Sbjct: 132 QTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183

Length = 1320

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 16/104 (15%)

Query: 2   CKIRPQSAREVIDMCRVC------TFVTPGEPQVTLG---------ADKSFTFDYVFDMA 46
            ++RP S  E+      C      T +    P+ +            +  F+F  VF   
Sbjct: 7   LRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPN 66

Query: 47  DVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGT 90
             Q   +E  A  LV   L+G N+ +  YG T SGKTYTM  G+
Sbjct: 67  TTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTM-QGS 109

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 56.3 bits (136), Expect = 7e-11
 Identities = 22/55 (40%), Positives = 29/55 (52%)

Query: 32 GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
          G  K + FD  +     Q  I+      +V   L G NAT+ AYG TG+GKT+TM
Sbjct: 44 GETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTM 98

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
          ++      L+  +L+GYN  I AYGQTGSGKTYTM
Sbjct: 8  VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTM 41

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	99.96
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	99.96
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	99.96
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	99.96
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	99.96
KOG0243|consensus	1041		99.96
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	99.95
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	99.95
KOG4280|consensus	574		99.95
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	99.95
KOG0245|consensus	1221		99.95
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	99.95
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	99.95
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	99.95
KOG0240|consensus	607		99.94
KOG0242|consensus	675		99.94
PLN03188	1320	kinesin-12 family protein; Provisional	99.93
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	99.93
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	99.93
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	99.93
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	99.93
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	99.92
KOG0246|consensus	676		99.92
KOG0239|consensus	670		99.92
KOG0241|consensus	1714		99.91
KOG0247|consensus	809		99.85
KOG0244|consensus	913		99.8
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	99.75
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	99.7
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	95.95
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.65
PRK06893	229	DNA replication initiation factor; Validated	95.35
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	95.21
PRK06620	214	hypothetical protein; Validated	94.95
PRK09087	226	hypothetical protein; Validated	94.81
PRK00411	394	cdc6 cell division control protein 6; Reviewed	94.81
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	94.61
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.03
PRK05642	234	DNA replication initiation factor; Validated	93.91
PRK08084	235	DNA replication initiation factor; Provisional	93.76
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	93.43
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	93.43
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	93.4
PRK08116	268	hypothetical protein; Validated	93.16
PRK14086	617	dnaA chromosomal replication initiation protein; P	93.13
PF13245	76	AAA_19: Part of AAA domain	93.09
PRK12377	248	putative replication protein; Provisional	93.0
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	92.81
COG1484	254	DnaC DNA replication protein [DNA replication, rec	92.68
TIGR02533	486	type_II_gspE general secretory pathway protein E.	92.28
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	92.09
PRK14088	440	dnaA chromosomal replication initiation protein; P	92.06
PRK07952	244	DNA replication protein DnaC; Validated	92.02
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	91.97
PRK10436	462	hypothetical protein; Provisional	91.84
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	91.69
PRK08727	233	hypothetical protein; Validated	91.52
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	91.51
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	91.43
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	91.37
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	91.24
PRK08181	269	transposase; Validated	91.07
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	91.04
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	91.01
PRK08939	306	primosomal protein DnaI; Reviewed	90.96
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	90.92
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	90.9
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	90.88
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	90.88
COG0593	408	DnaA ATPase involved in DNA replication initiation	90.83
PRK06835	329	DNA replication protein DnaC; Validated	90.62
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	90.53
PRK06526	254	transposase; Provisional	90.47
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	90.36
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	90.27
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	90.22
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	90.21
PHA00729	226	NTP-binding motif containing protein	90.2
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	90.13
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	90.05
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	90.01
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	90.01
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	89.9
COG5008	375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	89.87
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	89.77
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	89.68
PRK08903	227	DnaA regulatory inactivator Hda; Validated	89.67
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	89.53
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	89.52
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	89.41
PRK13833	323	conjugal transfer protein TrbB; Provisional	89.38
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	89.31
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	89.19
PRK14087	450	dnaA chromosomal replication initiation protein; P	89.02
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	88.84
PF00580	315	UvrD-helicase: UvrD/REP helicase N-terminal domain	88.8
PRK12402	337	replication factor C small subunit 2; Reviewed	88.39
PRK00149	450	dnaA chromosomal replication initiation protein; R	88.21
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	88.02
PTZ00112	1164	origin recognition complex 1 protein; Provisional	87.98
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	87.9
PRK13851	344	type IV secretion system protein VirB11; Provision	87.8
PRK09183	259	transposase/IS protein; Provisional	87.65
PRK12422	445	chromosomal replication initiation protein; Provis	87.62
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	87.48
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	87.27
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	86.62
PRK06547	172	hypothetical protein; Provisional	86.52
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	86.41
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	86.25
PF10923	416	DUF2791: P-loop Domain of unknown function (DUF279	86.09
PRK06921	266	hypothetical protein; Provisional	85.92
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	85.65
PF06048	286	DUF927: Domain of unknown function (DUF927); Inter	84.95
PTZ00014	821	myosin-A; Provisional	84.87
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	84.62
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	84.56
PRK11776	460	ATP-dependent RNA helicase DbpA; Provisional	84.15
KOG2543|consensus	438		84.12
KOG0989|consensus	346		83.83
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	83.71
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	83.37
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	83.33
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	83.1
PRK13764	602	ATPase; Provisional	82.9
smart00487	201	DEXDc DEAD-like helicases superfamily.	82.8
PHA02544	316	44 clamp loader, small subunit; Provisional	82.26
PRK04328	249	hypothetical protein; Provisional	81.9
PRK11192	434	ATP-dependent RNA helicase SrmB; Provisional	81.74
PRK10590	456	ATP-dependent RNA helicase RhlE; Provisional	81.68
KOG1547|consensus	336		81.59
PRK10536	262	hypothetical protein; Provisional	80.85
COG4096	875	HsdR Type I site-specific restriction-modification	80.83
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	80.77
PTZ00424	401	helicase 45; Provisional	80.74
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	80.65
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	80.65
PRK00440	319	rfc replication factor C small subunit; Reviewed	80.6
PRK04837	423	ATP-dependent RNA helicase RhlB; Provisional	80.59
PLN03025	319	replication factor C subunit; Provisional	80.54
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	80.45
TIGR00348	667	hsdR type I site-specific deoxyribonuclease, HsdR	80.33

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=99.96  E-value=1.6e-29  Score=180.72  Aligned_cols=95  Identities=36%  Similarity=0.498  Sum_probs=81.8

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEE---------------eCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHh
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVT---------------LGADKSFTFDYVFDMADVQTTIYELCAASLVAGSL   65 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~---------------~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~   65 (97)
                      +|||||++.+|..++...++.+.+++..+.               ...++.|.||+||+++++|++||+.++.|+|+.++
T Consensus         5 ~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~   84 (338)
T cd01370           5 AVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLVDGVL   84 (338)
T ss_pred             EEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            699999999998888888887765432221               11358899999999999999999999999999999


Q ss_pred             CCCCEEEEeeccCCCccceeecCCCCCCCC
Q psy15017         66 EGYNATILAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      +|+|+||||||+|||||||||+|+.++|+.
T Consensus        85 ~G~n~~i~ayGqtGSGKTyTm~G~~~~~Gi  114 (338)
T cd01370          85 NGYNATVFAYGATGAGKTHTMLGTDSDPGL  114 (338)
T ss_pred             CCCCceEEeeCCCCCCCeEEEcCCCCCCch
Confidence            999999999999999999999999887754

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=99.96  E-value=6.3e-29  Score=177.57  Aligned_cols=92  Identities=37%  Similarity=0.501  Sum_probs=79.4

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC-CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTG   79 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~   79 (97)
                      +|||||++..|.......++...+.+..+... +++.|.||+|||++++|++||+.++.|+|+.+++|+|+||||||+||
T Consensus         6 ~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTG   85 (337)
T cd01373           6 VVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTG   85 (337)
T ss_pred             EEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCC
Confidence            59999999999766666777665544443332 36899999999999999999999999999999999999999999999


Q ss_pred             CccceeecCCCCC
Q psy15017         80 SGKTYTMGTGTFS   92 (97)
Q Consensus        80 sGKt~T~~G~~~~   92 (97)
                      |||||||+|+...
T Consensus        86 SGKTyTm~G~~~~   98 (337)
T cd01373          86 SGKTYTMMGPSSS   98 (337)
T ss_pred             CCceEEecCCCCc
Confidence            9999999998764

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=99.96  E-value=6e-29  Score=178.18  Aligned_cols=94  Identities=31%  Similarity=0.406  Sum_probs=80.5

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC----------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHH
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG----------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGS   64 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~----------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~   64 (97)
                      +|||||++..|.......++.+.+++ .+.+.                .++.|.||+||+++++|++||+.++.|+|+.+
T Consensus         6 ~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~   84 (345)
T cd01368           6 YLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLVQDL   84 (345)
T ss_pred             EEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence            69999999999766667777664433 33321                36789999999999999999999999999999


Q ss_pred             hCCCCEEEEeeccCCCccceeecCCCCCCCC
Q psy15017         65 LEGYNATILAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        65 ~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      ++|+|+||||||+|||||||||+|+.++++.
T Consensus        85 l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gl  115 (345)
T cd01368          85 LKGKNSLLFTYGVTNSGKTYTMQGSPGDGGI  115 (345)
T ss_pred             hCCCceEEEEeCCCCCCCeEEecCCCCCCch
Confidence            9999999999999999999999999987764

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=99.96  E-value=9.1e-29  Score=175.82  Aligned_cols=94  Identities=35%  Similarity=0.462  Sum_probs=80.2

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGY   68 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~   68 (97)
                      +|||||++..|...+...++.+... .++.+.            +.++|.||+||+++++|+++|+.++.|+|+.+++|+
T Consensus         6 ~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~   84 (322)
T cd01367           6 AVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGG   84 (322)
T ss_pred             EEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            5999999999986666666665443 333332            257999999999999999999999999999999999


Q ss_pred             CEEEEeeccCCCccceeecCCCCCCCC
Q psy15017         69 NATILAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      |+||||||+|||||||||+|+.++++.
T Consensus        85 n~~i~ayGqtGSGKTyTm~G~~~~~Gl  111 (322)
T cd01367          85 VATCFAYGQTGSGKTYTMLGDENQEGL  111 (322)
T ss_pred             ceEEEeccCCCCCCceEecCcCCcCcc
Confidence            999999999999999999999887764

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=99.96  E-value=1.2e-28  Score=176.07  Aligned_cols=91  Identities=60%  Similarity=1.044  Sum_probs=85.5

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGS   80 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~s   80 (97)
                      +||+||+...|..++...++.+.+.++++.+...+.|.||+|||++++|+++|+.++.|+|+.+++|+|+||||||++||
T Consensus         6 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgS   85 (341)
T cd01372           6 AVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGS   85 (341)
T ss_pred             EEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCC
Confidence            58999999999888888888888888888888899999999999999999999999999999999999999999999999


Q ss_pred             ccceeecCCCC
Q psy15017         81 GKTYTMGTGTF   91 (97)
Q Consensus        81 GKt~T~~G~~~   91 (97)
                      ||||||+|+..
T Consensus        86 GKT~Tm~G~~~   96 (341)
T cd01372          86 GKTYTMGTAFT   96 (341)
T ss_pred             CCcEEecCCCc
Confidence            99999999864

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>KOG0243|consensus

Probab=99.96  E-value=1.1e-28  Score=191.92  Aligned_cols=91  Identities=40%  Similarity=0.625  Sum_probs=80.1

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC-------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATIL   73 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~-------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~   73 (97)
                      +|||||++.+|.......++.+++...-+.+.       -.++|+||+||++.+.|.++|+..+.|+|..++.||||+||
T Consensus        54 ivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIF  133 (1041)
T KOG0243|consen   54 IVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIF  133 (1041)
T ss_pred             EEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEE
Confidence            59999999999988888888887644434432       25889999999999999999999999999999999999999


Q ss_pred             eeccCCCccceeecCCCC
Q psy15017         74 AYGQTGSGKTYTMGTGTF   91 (97)
Q Consensus        74 ayG~t~sGKt~T~~G~~~   91 (97)
                      ||||||+||||||.|+..
T Consensus       134 AYGQTGTGKTyTMeG~~~  151 (1041)
T KOG0243|consen  134 AYGQTGTGKTYTMEGGER  151 (1041)
T ss_pred             EecCCCCCceeeeecCcc
Confidence            999999999999999543

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=99.95  E-value=2.5e-28  Score=175.51  Aligned_cols=95  Identities=29%  Similarity=0.381  Sum_probs=80.8

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------CCeeeeccEEecCC-------CcHHHHHHHHHHHHHHHHh
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMA-------DVQTTIYELCAASLVAGSL   65 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~F~fd~vf~~~-------~~q~~v~~~~~~p~v~~~~   65 (97)
                      +||+||++..|...+...++.+.+....+...        ..++|.||+|||+.       ++|+++|+.++.|+++.++
T Consensus         6 ~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l   85 (356)
T cd01365           6 AVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAF   85 (356)
T ss_pred             EEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            59999999999888877777776522222211        35789999999999       9999999999999999999


Q ss_pred             CCCCEEEEeeccCCCccceeecCCCCCCCC
Q psy15017         66 EGYNATILAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      +|+|+||||||+|||||||||+|+...++.
T Consensus        86 ~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gl  115 (356)
T cd01365          86 EGYNVCLFAYGQTGSGKSYTMMGYKEEKGI  115 (356)
T ss_pred             CCCceEEEEecCCCCCCeEEecCCCCCCch
Confidence            999999999999999999999999886653

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=99.95  E-value=5.7e-28  Score=172.35  Aligned_cols=91  Identities=42%  Similarity=0.559  Sum_probs=82.4

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI   72 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v   72 (97)
                      +|||||++..|.......++.+++.+.++.+.        ..+.|.||+||+++++|+++|+.++.|+|+.+++|+|+||
T Consensus         6 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i   85 (333)
T cd01371           6 VVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTI   85 (333)
T ss_pred             EEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeE
Confidence            59999999999888878888887777766653        3578999999999999999999999999999999999999


Q ss_pred             EeeccCCCccceeecCCCC
Q psy15017         73 LAYGQTGSGKTYTMGTGTF   91 (97)
Q Consensus        73 ~ayG~t~sGKt~T~~G~~~   91 (97)
                      ||||++||||||||+|+..
T Consensus        86 ~ayG~tgSGKTyTm~G~~~  104 (333)
T cd01371          86 FAYGQTGTGKTFTMEGVRE  104 (333)
T ss_pred             EecCCCCCCCcEeecCCCC
Confidence            9999999999999999876

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>KOG4280|consensus

Probab=99.95  E-value=3.4e-28  Score=181.73  Aligned_cols=90  Identities=47%  Similarity=0.687  Sum_probs=82.0

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI   72 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v   72 (97)
                      +||+||++..+..+....++.+++....+.+.        .+++|+||.||+++++|++||+.++.|+|+.+++|||+||
T Consensus        10 vvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtv   89 (574)
T KOG4280|consen   10 VVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTV   89 (574)
T ss_pred             EEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceE
Confidence            68999999999988888888887766666553        3678999999999999999999999999999999999999


Q ss_pred             EeeccCCCccceeecCCC
Q psy15017         73 LAYGQTGSGKTYTMGTGT   90 (97)
Q Consensus        73 ~ayG~t~sGKt~T~~G~~   90 (97)
                      ||||||||||||||.|+.
T Consensus        90 FaYGQTGsGKTyTM~G~~  107 (574)
T KOG4280|consen   90 FAYGQTGSGKTYTMIGPD  107 (574)
T ss_pred             EEeccCCCCCceEeeCCC
Confidence            999999999999999994

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=99.95  E-value=1.8e-27  Score=169.14  Aligned_cols=90  Identities=38%  Similarity=0.628  Sum_probs=80.7

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC---CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeecc
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG---ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQ   77 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~   77 (97)
                      +|||||++..|...+...++.+.++ .++.+.   ..+.|.||+|||++++|+++|+.++.|+|+.+++|+|+||||||+
T Consensus         7 ~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~   85 (325)
T cd01369           7 VCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQ   85 (325)
T ss_pred             EEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCC
Confidence            5899999999977777788777544 556664   478999999999999999999999999999999999999999999


Q ss_pred             CCCccceeecCCCC
Q psy15017         78 TGSGKTYTMGTGTF   91 (97)
Q Consensus        78 t~sGKt~T~~G~~~   91 (97)
                      +||||||||+|+..
T Consensus        86 tgSGKT~Tm~G~~~   99 (325)
T cd01369          86 TGSGKTYTMEGPPG   99 (325)
T ss_pred             CCCCceEEecCCCC
Confidence            99999999999887

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>KOG0245|consensus

Probab=99.95  E-value=1.1e-27  Score=185.48  Aligned_cols=90  Identities=33%  Similarity=0.499  Sum_probs=76.6

Q ss_pred             EEecCCCchhhhcCCceEEEEcCCCCeEEeC----CCeeeeccEEecCCC-------cHHHHHHHHHHHHHHHHhCCCCE
Q psy15017          2 CKIRPQSAREVIDMCRVCTFVTPGEPQVTLG----ADKSFTFDYVFDMAD-------VQTTIYELCAASLVAGSLEGYNA   70 (97)
Q Consensus         2 vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~F~fd~vf~~~~-------~q~~v~~~~~~p~v~~~~~g~n~   70 (97)
                      |||||+|.+|..+....++.+.....+++..    ....|+||+.||+++       +|..||+.++.+|++.+|+|||+
T Consensus        10 VRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~   89 (1221)
T KOG0245|consen   10 VRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNV   89 (1221)
T ss_pred             EEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccce
Confidence            8999999999988766666664444444332    235699999999984       89999999999999999999999


Q ss_pred             EEEeeccCCCccceeecCCCC
Q psy15017         71 TILAYGQTGSGKTYTMGTGTF   91 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~~G~~~   91 (97)
                      ||||||||||||+|||+|..+
T Consensus        90 ClFAYGQTGSGKSYTMMG~~~  110 (1221)
T KOG0245|consen   90 CLFAYGQTGSGKSYTMMGFQE  110 (1221)
T ss_pred             EEEEeccCCCCcceeeeccCC
Confidence            999999999999999999983

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=99.95  E-value=2.6e-27  Score=169.90  Aligned_cols=92  Identities=35%  Similarity=0.579  Sum_probs=82.0

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC-------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATIL   73 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~-------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~   73 (97)
                      +||+||+...|...+...++.+...++.+.+.       ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||
T Consensus         7 ~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~   86 (352)
T cd01364           7 VVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIF   86 (352)
T ss_pred             EEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence            58999999999877777888877666666553       35889999999999999999999999999999999999999


Q ss_pred             eeccCCCccceeecCCCCC
Q psy15017         74 AYGQTGSGKTYTMGTGTFS   92 (97)
Q Consensus        74 ayG~t~sGKt~T~~G~~~~   92 (97)
                      |||++||||||||+|+...
T Consensus        87 ayG~tgSGKTyTl~G~~~~  105 (352)
T cd01364          87 AYGQTGTGKTYTMEGDRTD  105 (352)
T ss_pred             ECCCCCCCCcEEecCCCcc
Confidence            9999999999999998654

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=99.95  E-value=3.1e-27  Score=167.72  Aligned_cols=93  Identities=29%  Similarity=0.398  Sum_probs=77.0

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCC----CeEEeC------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGE----PQVTLG------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNA   70 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~----~~~~~~------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~   70 (97)
                      +|||||+.++|.  ....++.+.+.+    ..+.+.      .+++|.||+||+++++|+++|+.++.|+|+.+++|+|+
T Consensus         5 ~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~   82 (319)
T cd01376           5 VVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNA   82 (319)
T ss_pred             EEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence            699999999983  334455443332    234332      35799999999999999999999999999999999999


Q ss_pred             EEEeeccCCCccceeecCCCCCCCC
Q psy15017         71 TILAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      ||||||++||||||||+|+..+++.
T Consensus        83 ~i~ayG~tgSGKTyTm~G~~~~~Gl  107 (319)
T cd01376          83 TVFAYGSTGAGKTHTMLGDPNEPGL  107 (319)
T ss_pred             EEEEECCCCCCCcEEEeCCcCccch
Confidence            9999999999999999999887764

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=99.95  E-value=3.7e-27  Score=167.38  Aligned_cols=93  Identities=40%  Similarity=0.588  Sum_probs=79.7

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeCC---CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeecc
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA---DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQ   77 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~   77 (97)
                      +||+||++..|. .....++.+.++ ..+.+..   .+.|.||+||+++++|+++|+.++.|+|+.+++|+|+||||||+
T Consensus         5 ~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~   82 (321)
T cd01374           5 SVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQ   82 (321)
T ss_pred             EEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecC
Confidence            589999999987 344555555554 4455433   79999999999999999999999999999999999999999999


Q ss_pred             CCCccceeecCCCCCCCC
Q psy15017         78 TGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        78 t~sGKt~T~~G~~~~~~~   95 (97)
                      +||||||||+|+..+++.
T Consensus        83 tgSGKT~T~~G~~~~~Gl  100 (321)
T cd01374          83 TSSGKTFTMSGDEQEPGI  100 (321)
T ss_pred             CCCCCceeccCCCCCCch
Confidence            999999999999877754

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>KOG0240|consensus

Probab=99.94  E-value=8.7e-27  Score=172.42  Aligned_cols=95  Identities=39%  Similarity=0.605  Sum_probs=83.5

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeCC---CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeecc
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA---DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQ   77 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~   77 (97)
                      +||+||++..|.......+....+++..+.+..   .++|.||+||+++++|++||+.++.|+|+++|.|||++||||||
T Consensus        12 ~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGq   91 (607)
T KOG0240|consen   12 VCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQ   91 (607)
T ss_pred             EEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecC
Confidence            589999999998777666655555466666644   38999999999999999999999999999999999999999999


Q ss_pred             CCCccceeecCCCCCCCC
Q psy15017         78 TGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        78 t~sGKt~T~~G~~~~~~~   95 (97)
                      |+|||||||+|...+|..
T Consensus        92 T~sGKTytm~G~~~d~~~  109 (607)
T KOG0240|consen   92 TGSGKTYTMEGIGHDPEE  109 (607)
T ss_pred             CCCCcceeecccCCChhh
Confidence            999999999999987765

>KOG0242|consensus

Probab=99.94  E-value=1.4e-26  Score=176.91  Aligned_cols=95  Identities=35%  Similarity=0.468  Sum_probs=78.3

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC-C-------CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-A-------DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI   72 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~-~-------~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v   72 (97)
                      +||+||++.+|...+......+..+....... .       +..|.||+||++.++|++||+..+.|++..+++|+|++|
T Consensus        11 ~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TV   90 (675)
T KOG0242|consen   11 SVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATV   90 (675)
T ss_pred             EEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccce
Confidence            48999999996554544544443333322211 1       389999999999999999999999999999999999999


Q ss_pred             EeeccCCCccceeecCCCCCCCC
Q psy15017         73 LAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        73 ~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      ||||+|||||||||.|..++|+.
T Consensus        91 FAYG~TgSGKTyTM~G~~~~PGi  113 (675)
T KOG0242|consen   91 FAYGQTGSGKTYTMSGSEDDPGI  113 (675)
T ss_pred             eeecCCCCCCceEEeccCCCCCe
Confidence            99999999999999999999985

>PLN03188 kinesin-12 family protein; Provisional

Probab=99.93  E-value=5.4e-26  Score=179.10  Aligned_cols=85  Identities=35%  Similarity=0.587  Sum_probs=71.6

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGS   80 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~s   80 (97)
                      +|||||++..|.  +...+.. . .+..+.+ ..+.|.||+||++.++|++||+.++.|+|+.+++|+|+||||||+|||
T Consensus       103 ~VRVRPl~~~E~--g~~iV~~-~-s~dsl~I-~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGS  177 (1320)
T PLN03188        103 IVRMKPLNKGEE--GEMIVQK-M-SNDSLTI-NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGS  177 (1320)
T ss_pred             EEEcCCCCCccC--CCeeEEE-c-CCCeEEE-eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCC
Confidence            699999999863  3223322 2 3344555 568999999999999999999999999999999999999999999999


Q ss_pred             ccceeecCCC
Q psy15017         81 GKTYTMGTGT   90 (97)
Q Consensus        81 GKt~T~~G~~   90 (97)
                      ||||||+|+.
T Consensus       178 GKTYTM~G~~  187 (1320)
T PLN03188        178 GKTYTMWGPA  187 (1320)
T ss_pred             CCCEeeCCCC
Confidence            9999999975

>cd00106 KISc Kinesin motor domain

Probab=99.93  E-value=1.5e-25  Score=159.10  Aligned_cols=93  Identities=49%  Similarity=0.680  Sum_probs=79.4

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeCC--------CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA--------DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI   72 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~--------~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v   72 (97)
                      +||+||++..|. .....++.+.++ .++.+..        .+.|.||+|||++++|+++|+.++.|+++.+++|+|+||
T Consensus         5 ~vRvrP~~~~~~-~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i   82 (328)
T cd00106           5 VVRIRPLNGRES-KSEESCITVDDN-KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTI   82 (328)
T ss_pred             EEEcCCCCcccc-cCCCcEEEECCC-CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeE
Confidence            699999998873 445666666554 4454432        589999999999999999999999999999999999999


Q ss_pred             EeeccCCCccceeecCCCCCCCC
Q psy15017         73 LAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        73 ~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      |+||++||||||||+|+.++++.
T Consensus        83 ~~yG~tgSGKT~tl~G~~~~~Gl  105 (328)
T cd00106          83 FAYGQTGSGKTYTMFGSPKDPGI  105 (328)
T ss_pred             EEecCCCCCCeEEecCCCCCCch
Confidence            99999999999999999887764

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=99.93  E-value=2.5e-25  Score=158.32  Aligned_cols=93  Identities=39%  Similarity=0.611  Sum_probs=77.9

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCC-CeEEeC----CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEee
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGE-PQVTLG----ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAY   75 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~-~~~~~~----~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ay   75 (97)
                      +||+||+...|. .....++.+.+.+ ..+.+.    ..+.|.||+||+++++|+++|+. +.|+|+.+++|+|+|||||
T Consensus         7 ~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ay   84 (329)
T cd01366           7 FCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAY   84 (329)
T ss_pred             EEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEe
Confidence            699999999986 3334455555543 555553    35899999999999999999998 5999999999999999999


Q ss_pred             ccCCCccceeecCCCCCCCC
Q psy15017         76 GQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        76 G~t~sGKt~T~~G~~~~~~~   95 (97)
                      |++||||||||+|+.++++.
T Consensus        85 G~tgSGKT~tl~G~~~~~Gl  104 (329)
T cd01366          85 GQTGSGKTYTMEGPPENPGI  104 (329)
T ss_pred             CCCCCCCcEEecCCCCCCCc
Confidence            99999999999999877764

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>smart00129 KISc Kinesin motor, catalytic domain

Probab=99.93  E-value=3.7e-25  Score=157.63  Aligned_cols=95  Identities=42%  Similarity=0.592  Sum_probs=83.3

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCC-eEEeC------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEP-QVTLG------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATIL   73 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~-~~~~~------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~   73 (97)
                      +|||||++..|...+...++.+.+.+. .+.+.      ..+.|.||+||+++++|+++|+.++.|+|+.+++|+|+|||
T Consensus         5 ~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~   84 (335)
T smart00129        5 VVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIF   84 (335)
T ss_pred             EEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEE
Confidence            599999999998877788887765543 44443      35899999999999999999999999999999999999999


Q ss_pred             eeccCCCccceeecCCCCCCCC
Q psy15017         74 AYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        74 ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      +||++||||||||+|+.++++.
T Consensus        85 ~yG~tgSGKT~tl~G~~~~~Gl  106 (335)
T smart00129       85 AYGQTGSGKTYTMSGTPDSPGI  106 (335)
T ss_pred             EeCCCCCCCceEecCCCCCCCH
Confidence            9999999999999999887753

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=99.93  E-value=1.7e-25  Score=159.69  Aligned_cols=85  Identities=41%  Similarity=0.652  Sum_probs=69.6

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe--------------CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------------GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLE   66 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~--------------~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~   66 (97)
                      +||+||+...+..     .+.+.+++.++.+              ...+.|.||+||++ ++|+++|+.++.|+|+.+++
T Consensus         5 ~vRvRP~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~   78 (334)
T cd01375           5 FVRVRPTPTKQGS-----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALD   78 (334)
T ss_pred             EEECCCCCCCCCc-----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhC
Confidence            5999999985532     2233444333222              13578999999999 99999999999999999999


Q ss_pred             CCCEEEEeeccCCCccceeecCCCC
Q psy15017         67 GYNATILAYGQTGSGKTYTMGTGTF   91 (97)
Q Consensus        67 g~n~~v~ayG~t~sGKt~T~~G~~~   91 (97)
                      |+|+||||||++||||||||+|+..
T Consensus        79 G~n~~i~ayG~tgSGKTyTm~G~~~  103 (334)
T cd01375          79 GYNGTIFAYGQTGAGKTFTMTGGTE  103 (334)
T ss_pred             CCccceeeecCCCCCCeEEccCCCC
Confidence            9999999999999999999999864

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=99.92  E-value=6.4e-26  Score=161.36  Aligned_cols=92  Identities=41%  Similarity=0.577  Sum_probs=75.7

Q ss_pred             EecCCCchhhhcCCceEEEEcCCCC--------eEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy15017          3 KIRPQSAREVIDMCRVCTFVTPGEP--------QVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILA   74 (97)
Q Consensus         3 RvRP~~~~e~~~~~~~~~~~~~~~~--------~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~a   74 (97)
                      ||||++..|.......++.+.....        .......+.|.||+|||++++|++||+.++.|+|+.+++|+|+||||
T Consensus         1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a   80 (335)
T PF00225_consen    1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA   80 (335)
T ss_dssp             EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred             CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence            9999999999887777766543211        11123468999999999999999999999999999999999999999


Q ss_pred             eccCCCccceeecCC--CCCCC
Q psy15017         75 YGQTGSGKTYTMGTG--TFSPI   94 (97)
Q Consensus        75 yG~t~sGKt~T~~G~--~~~~~   94 (97)
                      ||++||||||||+|+  ...|+
T Consensus        81 yG~tgSGKT~Tm~G~~~~~~~G  102 (335)
T PF00225_consen   81 YGQTGSGKTYTMFGSNDPSEPG  102 (335)
T ss_dssp             EESTTSSHHHHHTBSTSTTTBS
T ss_pred             eccccccccccccccccccccc
Confidence            999999999999998  55554

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>KOG0246|consensus

Probab=99.92  E-value=3e-25  Score=164.59  Aligned_cols=92  Identities=36%  Similarity=0.492  Sum_probs=80.7

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC-----------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-----------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYN   69 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~-----------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n   69 (97)
                      +||-||+|.+|.......++++..++..+...           .+++|.||++||+.+++++||..++.|+|+.+|+|--
T Consensus       213 CVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~  292 (676)
T KOG0246|consen  213 CVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGM  292 (676)
T ss_pred             EeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCc
Confidence            58999999999988888888876655543332           3689999999999999999999999999999999999


Q ss_pred             EEEEeeccCCCccceeecCCCCC
Q psy15017         70 ATILAYGQTGSGKTYTMGTGTFS   92 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~~G~~~~   92 (97)
                      +++||||||||||||||+|+...
T Consensus       293 ATCFAYGQTGSGKT~TMggdfsg  315 (676)
T KOG0246|consen  293 ATCFAYGQTGSGKTYTMGGDFSG  315 (676)
T ss_pred             eeeeeeccCCCCceeecccccCc
Confidence            99999999999999999887654

>KOG0239|consensus

Probab=99.92  E-value=4.2e-25  Score=168.58  Aligned_cols=93  Identities=37%  Similarity=0.560  Sum_probs=72.9

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI   72 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v   72 (97)
                      ||||||+.+.|....+..++..... ..+.+.        ..+.|.||+||++.++|++||.. +.|+|..+|+|||.||
T Consensus       319 ~CRvRP~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~lDGYnVCI  396 (670)
T KOG0239|consen  319 FCRVRPLLPSEKQRLQSKVIDTEEQ-GEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE-VSPLVQSALDGYNVCI  396 (670)
T ss_pred             EEEecCCCccccccccccccccCCc-ceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH-HHHHHHHHhcCcceeE
Confidence            6899999999986544444333222 112221        12359999999999999999988 7999999999999999


Q ss_pred             EeeccCCCccceeecC-CCCCCCC
Q psy15017         73 LAYGQTGSGKTYTMGT-GTFSPIS   95 (97)
Q Consensus        73 ~ayG~t~sGKt~T~~G-~~~~~~~   95 (97)
                      ||||||||||||||.| +.++++.
T Consensus       397 FAYGQTGSGKTyTM~G~~~~~~Gi  420 (670)
T KOG0239|consen  397 FAYGQTGSGKTYTMSGPTPEDPGI  420 (670)
T ss_pred             EEecccCCCccccccCCCcccCCc
Confidence            9999999999999999 5666653

>KOG0241|consensus

Probab=99.91  E-value=1.1e-24  Score=168.55  Aligned_cols=95  Identities=31%  Similarity=0.467  Sum_probs=81.3

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe----------CCCeeeeccEEecCC-------CcHHHHHHHHHHHHHHH
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------GADKSFTFDYVFDMA-------DVQTTIYELCAASLVAG   63 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~----------~~~~~F~fd~vf~~~-------~~q~~v~~~~~~p~v~~   63 (97)
                      .|||||++.+|........+.++..++.+..          +.+++|.||++||+.       ++|+.||..+...+++.
T Consensus         9 aVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~n   88 (1714)
T KOG0241|consen    9 AVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILEN   88 (1714)
T ss_pred             EEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcchHHHHH
Confidence            3899999999987666666666544443322          247999999999987       48999999999999999


Q ss_pred             HhCCCCEEEEeeccCCCccceeecCCCCCCCC
Q psy15017         64 SLEGYNATILAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        64 ~~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      +|+|||+|||||||+||||+|||+|..+.|++
T Consensus        89 af~GyNaCifaYGQtGsGKsYsmmGt~~QpGi  120 (1714)
T KOG0241|consen   89 AFQGYNACIFAYGQTGSGKSYSMMGTAEQPGI  120 (1714)
T ss_pred             HhhccceeeEEecccCCCceeEeeccCCCCCc
Confidence            99999999999999999999999999999986

>KOG0247|consensus

Probab=99.85  E-value=4.1e-21  Score=145.67  Aligned_cols=92  Identities=35%  Similarity=0.508  Sum_probs=74.4

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe--------------CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------------GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLE   66 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~--------------~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~   66 (97)
                      ++|+||+.+..   .+..|+.+.+....+..              ...+.|.|.+||+++++|.++|+.++.|+|.+++.
T Consensus        36 ~~rvrP~~~~~---~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLk  112 (809)
T KOG0247|consen   36 VCRVRPLSDAS---EDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLK  112 (809)
T ss_pred             eEeecCCCCCc---cccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHc
Confidence            68999998622   23345554433332211              12478999999999999999999999999999999


Q ss_pred             CCCEEEEeeccCCCccceeecCCCCCCCC
Q psy15017         67 GYNATILAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        67 g~n~~v~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      |.|..+|+||.|||||||||.|+...+++
T Consensus       113 gqn~LlFTyGVTgSGKTYTm~G~~~~~GI  141 (809)
T KOG0247|consen  113 GQNSLLFTYGVTGSGKTYTMTGTPDRPGI  141 (809)
T ss_pred             ccceeEEEeeccCCCceEEeecCCCCCCc
Confidence            99999999999999999999999998873

>KOG0244|consensus

Probab=99.80  E-value=9.3e-20  Score=140.93  Aligned_cols=86  Identities=53%  Similarity=0.851  Sum_probs=83.6

Q ss_pred             ecCCCchhhhcCCceEEEEcCCCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccc
Q psy15017          4 IRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKT   83 (97)
Q Consensus         4 vRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt   83 (97)
                      |||+..+|..+++..|+.+.+.++++.+....+|+||++|+.-..|.++|+.++.|+++.+++|||++++|||+||||||
T Consensus         1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkT   80 (913)
T KOG0244|consen    1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKT   80 (913)
T ss_pred             CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCce
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCC
Q psy15017         84 YTMGTG   89 (97)
Q Consensus        84 ~T~~G~   89 (97)
                      |||.++
T Consensus        81 ytmgt~   86 (913)
T KOG0244|consen   81 YTMGTN   86 (913)
T ss_pred             eecccc
Confidence            999766

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=99.75  E-value=3.7e-18  Score=129.16  Aligned_cols=62  Identities=44%  Similarity=0.679  Sum_probs=58.7

Q ss_pred             CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeecCCCCCCCC
Q psy15017         34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~~   95 (97)
                      ..+|.||+||++.++|+++|+..+.|+++.++.|+|||+||||+||+||||||.|..+.++.
T Consensus        55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gi  116 (568)
T COG5059          55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGI  116 (568)
T ss_pred             ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccch
Confidence            56799999999999999999999999999999999999999999999999999999977654

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=99.70  E-value=2.6e-17  Score=109.19  Aligned_cols=42  Identities=45%  Similarity=0.714  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeecCCCCCCC
Q psy15017         52 IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        52 v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~   94 (97)
                      +|+.+. |+++.+++|+|+|||+||++||||||||+|+.++++
T Consensus         8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~G   49 (186)
T cd01363           8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAG   49 (186)
T ss_pred             HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCC
Confidence            999999 999999999999999999999999999999986654

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=95.95  E-value=0.0078  Score=46.29  Aligned_cols=47  Identities=40%  Similarity=0.521  Sum_probs=35.0

Q ss_pred             eeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        35 ~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..|....-|.+..+|..--+.    +++.+-.|....++ .|.|||||||||
T Consensus         3 ~~F~l~s~f~PaGDQP~AI~~----Lv~gi~~g~~~QtL-LGvTGSGKTfT~   49 (663)
T COG0556           3 KPFKLHSPFKPAGDQPEAIAE----LVEGIENGLKHQTL-LGVTGSGKTFTM   49 (663)
T ss_pred             CceEeccCCCCCCCcHHHHHH----HHHHHhcCceeeEE-eeeccCCchhHH
Confidence            456777778888888765444    67777777654432 699999999998

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.65  E-value=0.0084  Score=40.74  Aligned_cols=50  Identities=26%  Similarity=0.449  Sum_probs=28.4

Q ss_pred             eeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        35 ~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      ..|+||.-... ..++..+... ..+.+.--..+| .++-||.+|+||||-|.
T Consensus         3 ~~~tFdnfv~g-~~N~~a~~~~-~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~   52 (219)
T PF00308_consen    3 PKYTFDNFVVG-ESNELAYAAA-KAIAENPGERYN-PLFLYGPSGLGKTHLLQ   52 (219)
T ss_dssp             TT-SCCCS--T-TTTHHHHHHH-HHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred             CCCccccCCcC-CcHHHHHHHH-HHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence            46788765443 3466666442 233333112234 47889999999999663

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK06893 DNA replication initiation factor; Validated

Probab=95.35  E-value=0.024  Score=38.64  Aligned_cols=49  Identities=14%  Similarity=0.094  Sum_probs=30.2

Q ss_pred             CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         33 ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        33 ~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .+..++||..+... +...+. .    +.+..-...+..++-||.+|+||||-+.
T Consensus         9 ~~~~~~fd~f~~~~-~~~~~~-~----~~~~~~~~~~~~l~l~G~~G~GKThL~~   57 (229)
T PRK06893          9 QIDDETLDNFYADN-NLLLLD-S----LRKNFIDLQQPFFYIWGGKSSGKSHLLK   57 (229)
T ss_pred             CCCcccccccccCC-hHHHHH-H----HHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence            35567788777543 222221 1    1222234667778999999999999773

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.21  E-value=0.012  Score=42.46  Aligned_cols=30  Identities=37%  Similarity=0.446  Sum_probs=26.7

Q ss_pred             HHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         57 AASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        57 ~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +.|++..+.+-.++.|++=|.||||||.||
T Consensus       113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl  142 (353)
T COG2805         113 LPPIVRELAESPRGLILVTGPTGSGKSTTL  142 (353)
T ss_pred             CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence            346888888999999999999999999997

>PRK06620 hypothetical protein; Validated

Probab=94.95  E-value=0.028  Score=38.11  Aligned_cols=52  Identities=25%  Similarity=0.371  Sum_probs=32.9

Q ss_pred             CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCC---EEEEeeccCCCccceeec
Q psy15017         32 GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYN---ATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        32 ~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n---~~v~ayG~t~sGKt~T~~   87 (97)
                      ..+..|+||...... +++..|..... +.+. . +.|   ..++=||.+|+||||-+.
T Consensus         8 ~~~~~~tfd~Fvvg~-~N~~a~~~~~~-~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~   62 (214)
T PRK06620          8 TTSSKYHPDEFIVSS-SNDQAYNIIKN-WQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK   62 (214)
T ss_pred             CCCCCCCchhhEecc-cHHHHHHHHHH-HHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence            345678888766544 45556665433 2221 1 222   458889999999999884

>PRK09087 hypothetical protein; Validated

Probab=94.81  E-value=0.033  Score=38.06  Aligned_cols=49  Identities=20%  Similarity=0.179  Sum_probs=31.6

Q ss_pred             CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         33 ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        33 ~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .+..|+||..+... .+...|..     +.......+..++=||.+||||||-+.
T Consensus        14 ~~~~~~~~~Fi~~~-~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~   62 (226)
T PRK09087         14 HDPAYGRDDLLVTE-SNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS   62 (226)
T ss_pred             CCCCCChhceeecC-chHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence            45667888766544 34446663     223223345557889999999999874

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=94.81  E-value=0.039  Score=40.00  Aligned_cols=54  Identities=26%  Similarity=0.289  Sum_probs=32.4

Q ss_pred             CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         33 ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        33 ~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+..|..+++-+.-...++-.+....-+-+.+..+....++-||..|+|||+++
T Consensus        19 ~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~   72 (394)
T PRK00411         19 DEEVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV   72 (394)
T ss_pred             ChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence            444555555554444555555554333323233445566889999999999876

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=94.61  E-value=0.03  Score=40.12  Aligned_cols=49  Identities=29%  Similarity=0.329  Sum_probs=29.5

Q ss_pred             eeccEEecCCCcHHHHHHHHHHHHHHHHhC-CCCEEEEeeccCCCccceee
Q psy15017         37 FTFDYVFDMADVQTTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        37 F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~-g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +.-|++-+.-...++-.+.+.. .+...+. +...+++-||..|+|||+++
T Consensus         8 l~~~~~p~~l~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~   57 (365)
T TIGR02928         8 LEPDYVPDRIVHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT   57 (365)
T ss_pred             CCCCCCCCCCCCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            3334444444445554544333 3344443 45567889999999999887

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.03  E-value=0.053  Score=32.66  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=18.7

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +...+.......++-+|.+|+|||+.+
T Consensus        10 i~~~~~~~~~~~v~i~G~~G~GKT~l~   36 (151)
T cd00009          10 LREALELPPPKNLLLYGPPGTGKTTLA   36 (151)
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence            333444434556788999999999765

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05642 DNA replication initiation factor; Validated

Probab=93.91  E-value=0.061  Score=36.84  Aligned_cols=48  Identities=17%  Similarity=0.225  Sum_probs=28.1

Q ss_pred             CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhC----CCCEEEEeeccCCCccceeec
Q psy15017         33 ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLE----GYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        33 ~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~----g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      -+..|+||.-...  .+...     ...++...+    .....++-||.+|+||||-+.
T Consensus        12 ~~~~~tfdnF~~~--~~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~   63 (234)
T PRK05642         12 LRDDATFANYYPG--ANAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ   63 (234)
T ss_pred             CCCcccccccCcC--ChHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence            3556788866633  23222     223333322    223457789999999999864

>PRK08084 DNA replication initiation factor; Provisional

Probab=93.76  E-value=0.08  Score=36.23  Aligned_cols=49  Identities=10%  Similarity=0.166  Sum_probs=30.5

Q ss_pred             CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         33 ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        33 ~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      -+..++||..+..  .+...+...-. +.   .......++-||.+|+||||-+.
T Consensus        15 ~~~~~~fd~f~~~--~n~~a~~~l~~-~~---~~~~~~~l~l~Gp~G~GKThLl~   63 (235)
T PRK08084         15 LPDDETFASFYPG--DNDSLLAALQN-AL---RQEHSGYIYLWSREGAGRSHLLH   63 (235)
T ss_pred             CCCcCCccccccC--ccHHHHHHHHH-HH---hCCCCCeEEEECCCCCCHHHHHH
Confidence            4566778765544  55556644322 22   12223468889999999999874

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=93.43  E-value=0.025  Score=38.11  Aligned_cols=15  Identities=53%  Similarity=0.866  Sum_probs=12.8

Q ss_pred             EEeeccCCCccceee
Q psy15017         72 ILAYGQTGSGKTYTM   86 (97)
Q Consensus        72 v~ayG~t~sGKt~T~   86 (97)
                      +..+|.||||||+|+
T Consensus        26 ~~I~G~TGsGKS~~~   40 (229)
T PF01935_consen   26 IAIFGTTGSGKSNTV   40 (229)
T ss_pred             EEEECCCCCCHHHHH
Confidence            346899999999987

It contains several conserved aspartates and histidines that could be metal ligands.

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.43  E-value=0.042  Score=41.84  Aligned_cols=30  Identities=37%  Similarity=0.351  Sum_probs=24.8

Q ss_pred             HHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         58 ASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        58 ~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      ...+..+++.-.+-++.=|.||||||.||+
T Consensus       247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY  276 (500)
T COG2804         247 LARLLRLLNRPQGLILVTGPTGSGKTTTLY  276 (500)
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence            345667778888888888999999999996

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=93.40  E-value=0.089  Score=38.62  Aligned_cols=26  Identities=42%  Similarity=0.641  Sum_probs=19.1

Q ss_pred             HHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         61 VAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        61 v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..++ .+....++.||.+|+|||.|+
T Consensus        33 l~~~~~~~~p~n~~iyG~~GTGKT~~~   59 (366)
T COG1474          33 LAPALRGERPSNIIIYGPTGTGKTATV   59 (366)
T ss_pred             HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence            33444 444555999999999999886

>PRK08116 hypothetical protein; Validated

Probab=93.16  E-value=0.079  Score=37.13  Aligned_cols=51  Identities=27%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             eeeeccEEecCCCcHHHHHHHHHHHHHHHHhC--CCCEEEEeeccCCCccceeec
Q psy15017         35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLE--GYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        35 ~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~--g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      ..++||.-. ....+...+.. +...++.+.+  ..+..++-||.+|+||||-+.
T Consensus        80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~  132 (268)
T PRK08116         80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA  132 (268)
T ss_pred             Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence            456666433 34455555544 4445555433  234458889999999999763

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=93.13  E-value=0.079  Score=41.44  Aligned_cols=51  Identities=25%  Similarity=0.410  Sum_probs=31.2

Q ss_pred             CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      +..|+||..+-.. +++..|.. +..+.+..-..+|. +|-||.+|+||||-+.
T Consensus       282 ~~~~TFDnFvvG~-sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~  332 (617)
T PRK14086        282 NPKYTFDTFVIGA-SNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLH  332 (617)
T ss_pred             CCCCCHhhhcCCC-ccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence            3568887554333 34455533 33334333335564 7889999999999873

>PF13245 AAA_19: Part of AAA domain

Probab=93.09  E-value=0.045  Score=31.28  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=17.0

Q ss_pred             HHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      |...+. .+..+..-|..|||||+|+.
T Consensus         3 v~~al~-~~~~~vv~g~pGtGKT~~~~   28 (76)
T PF13245_consen    3 VRRALA-GSPLFVVQGPPGTGKTTTLA   28 (76)
T ss_pred             HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence            344445 33334457999999998863

>PRK12377 putative replication protein; Provisional

Probab=93.00  E-value=0.14  Score=35.67  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=30.7

Q ss_pred             eeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        37 F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .+||........|..++.. +...++.+..+. ..++-+|.+|+||||.+.
T Consensus        71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~  119 (248)
T PRK12377         71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAA  119 (248)
T ss_pred             CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence            3566444334466666654 444555555544 356778999999999763

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=92.81  E-value=0.085  Score=33.51  Aligned_cols=19  Identities=37%  Similarity=0.389  Sum_probs=14.4

Q ss_pred             CEEEEeeccCCCccceeec
Q psy15017         69 NATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~~   87 (97)
                      ...++..+.||||||++|.
T Consensus        25 ~~~~ll~~~tGsGKT~~~~   43 (184)
T PF04851_consen   25 ERRVLLNAPTGSGKTIIAL   43 (184)
T ss_dssp             CSEEEEEESTTSSHHHHHH
T ss_pred             CCCEEEEECCCCCcChhhh
Confidence            3344456899999999885

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=92.68  E-value=0.16  Score=35.32  Aligned_cols=49  Identities=29%  Similarity=0.178  Sum_probs=29.8

Q ss_pred             eeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        35 ~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ++|.+..+-.....+...+.... .+++.+-.+.|  ++-||..|+||||-.
T Consensus        74 k~~~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~n--l~l~G~~G~GKThLa  122 (254)
T COG1484          74 KTFEEFDFEFQPGIDKKALEDLA-SLVEFFERGEN--LVLLGPPGVGKTHLA  122 (254)
T ss_pred             CCcccccccCCcchhHHHHHHHH-HHHHHhccCCc--EEEECCCCCcHHHHH
Confidence            45555444444456777776643 34444444444  556999999999965

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=92.28  E-value=0.078  Score=40.27  Aligned_cols=28  Identities=36%  Similarity=0.366  Sum_probs=22.0

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .+..++...++.++..|.||||||.||.
T Consensus       233 ~l~~~~~~~~GlilitGptGSGKTTtL~  260 (486)
T TIGR02533       233 RFERLIRRPHGIILVTGPTGSGKTTTLY  260 (486)
T ss_pred             HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence            4455666666678888999999999984

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=92.09  E-value=0.14  Score=37.23  Aligned_cols=37  Identities=14%  Similarity=0.348  Sum_probs=27.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         46 ADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        46 ~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..|+.+|+.++.    .+.......+|.-|..|+||||.+
T Consensus         3 n~eQ~~~~~~v~~----~~~~~~~~~~fv~G~~GtGKs~l~   39 (364)
T PF05970_consen    3 NEEQRRVFDTVIE----AIENEEGLNFFVTGPAGTGKSFLI   39 (364)
T ss_pred             CHHHHHHHHHHHH----HHHccCCcEEEEEcCCCCChhHHH
Confidence            4579999998654    333345567788999999999975

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=92.06  E-value=0.13  Score=38.47  Aligned_cols=50  Identities=22%  Similarity=0.396  Sum_probs=30.9

Q ss_pred             CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      +..|+||.-.- ..++...|..... +.+. -..+| .++-||.+|+||||-+.
T Consensus        99 ~~~~tFdnFv~-g~~n~~a~~~~~~-~~~~-~~~~n-~l~lyG~~G~GKTHLl~  148 (440)
T PRK14088         99 NPDYTFENFVV-GPGNSFAYHAALE-VAKN-PGRYN-PLFIYGGVGLGKTHLLQ  148 (440)
T ss_pred             CCCCccccccc-CCchHHHHHHHHH-HHhC-cCCCC-eEEEEcCCCCcHHHHHH
Confidence            35678876553 3456666654322 2221 11245 48899999999999873

>PRK07952 DNA replication protein DnaC; Validated

Probab=92.02  E-value=0.25  Score=34.36  Aligned_cols=50  Identities=16%  Similarity=0.153  Sum_probs=29.9

Q ss_pred             eeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        35 ~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...+||.-......|..++..+ ...++....+. ..++-+|.+|+||||.+
T Consensus        67 ~~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa  116 (244)
T PRK07952         67 QNCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLA  116 (244)
T ss_pred             cCCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHH
Confidence            3456664433344566666553 33344443333 35778899999999976

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=91.97  E-value=0.15  Score=37.49  Aligned_cols=50  Identities=22%  Similarity=0.361  Sum_probs=28.2

Q ss_pred             eeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        35 ~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      ..|+||.-.. ...+...|... ..+.+.--..+| .++-||.+|+||||.+.
T Consensus       105 ~~~tfd~fi~-g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~  154 (405)
T TIGR00362       105 PKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH  154 (405)
T ss_pred             CCCccccccc-CCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence            5677775332 34555555432 222222111233 46789999999999873

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK10436 hypothetical protein; Provisional

Probab=91.84  E-value=0.085  Score=39.88  Aligned_cols=28  Identities=39%  Similarity=0.428  Sum_probs=22.2

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .+..++..-++.|+.-|.||||||.||.
T Consensus       209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~  236 (462)
T PRK10436        209 QFRQALQQPQGLILVTGPTGSGKTVTLY  236 (462)
T ss_pred             HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence            4555666667788888999999999984

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=91.69  E-value=0.1  Score=37.76  Aligned_cols=29  Identities=34%  Similarity=0.431  Sum_probs=21.1

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      +.+..++.-....++..|.||||||.||.
T Consensus       112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~  140 (343)
T TIGR01420       112 PVLRELAERPRGLILVTGPTGSGKSTTLA  140 (343)
T ss_pred             HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence            34555554445667788999999999983

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK08727 hypothetical protein; Validated

Probab=91.52  E-value=0.077  Score=36.26  Aligned_cols=18  Identities=28%  Similarity=0.274  Sum_probs=15.2

Q ss_pred             EEEEeeccCCCccceeec
Q psy15017         70 ATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~~   87 (97)
                      ..++-||.+|+||||-+.
T Consensus        42 ~~l~l~G~~G~GKThL~~   59 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLAL   59 (233)
T ss_pred             CeEEEECCCCCCHHHHHH
Confidence            358889999999999763

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=91.51  E-value=0.084  Score=40.72  Aligned_cols=28  Identities=32%  Similarity=0.445  Sum_probs=22.1

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .+..++..-++.|+.-|.||||||.||.
T Consensus       307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~  334 (564)
T TIGR02538       307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY  334 (564)
T ss_pred             HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence            4556666667788888999999999984

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=91.43  E-value=0.25  Score=32.97  Aligned_cols=47  Identities=17%  Similarity=0.256  Sum_probs=27.9

Q ss_pred             CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..++||....  ..+....+..- .   .+.......++-||.+|+||||.+
T Consensus         9 ~~~~~~~~~~~--~~~~~~~~~l~-~---~~~~~~~~~lll~G~~G~GKT~la   55 (226)
T TIGR03420         9 PDDPTFDNFYA--GGNAELLAALR-Q---LAAGKGDRFLYLWGESGSGKSHLL   55 (226)
T ss_pred             CCchhhcCcCc--CCcHHHHHHHH-H---HHhcCCCCeEEEECCCCCCHHHHH
Confidence            34456664442  23444444321 1   122455667889999999999876

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=91.37  E-value=0.16  Score=39.91  Aligned_cols=37  Identities=32%  Similarity=0.424  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         49 QTTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        49 q~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...||.- +......++ .+.|.||+-.|.+|||||.+.
T Consensus        65 ~PHif~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~  102 (689)
T PF00063_consen   65 PPHIFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS  102 (689)
T ss_dssp             -SSHHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred             cCccchh-hhcccccccccccccceeeccccccccccch
Confidence            3445543 333444444 588999999999999999873

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=91.24  E-value=0.12  Score=36.20  Aligned_cols=28  Identities=43%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .+..++......++..|.+|||||.||.
T Consensus        71 ~l~~~~~~~~GlilisG~tGSGKTT~l~   98 (264)
T cd01129          71 IFRKLLEKPHGIILVTGPTGSGKTTTLY   98 (264)
T ss_pred             HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence            3455555445556677999999999883

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK08181 transposase; Validated

Probab=91.07  E-value=0.32  Score=34.26  Aligned_cols=19  Identities=37%  Similarity=0.714  Sum_probs=15.2

Q ss_pred             CCCCEEEEeeccCCCccceee
Q psy15017         66 EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+.|  ++-+|.+|+||||-+
T Consensus       105 ~~~n--lll~Gp~GtGKTHLa  123 (269)
T PRK08181        105 KGAN--LLLFGPPGGGKSHLA  123 (269)
T ss_pred             cCce--EEEEecCCCcHHHHH
Confidence            4444  677999999999976

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=91.04  E-value=0.12  Score=34.48  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=17.8

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+..++...+..++.-|..|+||||+|
T Consensus         9 a~~~~l~~~~~~~~l~G~aGtGKT~~l   35 (196)
T PF13604_consen    9 AVRAILTSGDRVSVLQGPAGTGKTTLL   35 (196)
T ss_dssp             HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred             HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence            344555444333445799999999987

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=91.01  E-value=0.1  Score=36.14  Aligned_cols=18  Identities=50%  Similarity=0.671  Sum_probs=14.1

Q ss_pred             CEEEEeeccCCCccceee
Q psy15017         69 NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~   86 (97)
                      .+.++.-|.+|||||.+|
T Consensus       127 ~~~ili~G~tGSGKTT~l  144 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLL  144 (270)
T ss_dssp             TEEEEEEESTTSSHHHHH
T ss_pred             ceEEEEECCCccccchHH
Confidence            344556699999999887

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK08939 primosomal protein DnaI; Reviewed

Probab=90.96  E-value=0.26  Score=35.27  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=30.0

Q ss_pred             eeccEEecCCCcHHHHHHHHHHHHHHHHhCC-CCEEEEeeccCCCccceeec
Q psy15017         37 FTFDYVFDMADVQTTIYELCAASLVAGSLEG-YNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        37 F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g-~n~~v~ayG~t~sGKt~T~~   87 (97)
                      -+|+.+-.....+..++.. +...++....| ....++-||.+|+||||-+.
T Consensus       124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~  174 (306)
T PRK08939        124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA  174 (306)
T ss_pred             CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence            4454443333355566654 34555554432 23357889999999999773

>smart00242 MYSc Myosin

Probab=90.92  E-value=0.29  Score=38.65  Aligned_cols=37  Identities=24%  Similarity=0.441  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         49 QTTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        49 q~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...+|.- +......++ .+.|.||+.-|.+|||||.|.
T Consensus        72 ~PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~  109 (677)
T smart00242       72 PPHVFAI-ADNAYRNMLNDKENQSIIISGESGAGKTENT  109 (677)
T ss_pred             CCCHHHH-HHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence            3556643 333344444 688999999999999999874

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=90.90  E-value=0.22  Score=35.02  Aligned_cols=20  Identities=35%  Similarity=0.400  Sum_probs=17.0

Q ss_pred             CCCEEEEeeccCCCccceee
Q psy15017         67 GYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        67 g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .-+.+|.-+|..|||||+-|
T Consensus        18 ~~~~~IgL~G~WGsGKSs~l   37 (325)
T PF07693_consen   18 DDPFVIGLYGEWGSGKSSFL   37 (325)
T ss_pred             CCCeEEEEECCCCCCHHHHH
Confidence            55778888999999999866

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=90.88  E-value=0.23  Score=32.69  Aligned_cols=17  Identities=35%  Similarity=0.694  Sum_probs=13.7

Q ss_pred             EEEEeeccCCCccceee
Q psy15017         70 ATILAYGQTGSGKTYTM   86 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~   86 (97)
                      -.++-+|.+|+||||..
T Consensus        48 ~~l~l~G~~G~GKThLa   64 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLA   64 (178)
T ss_dssp             -EEEEEESTTSSHHHHH
T ss_pred             eEEEEEhhHhHHHHHHH
Confidence            35777999999999965

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=90.88  E-value=0.14  Score=37.48  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=18.7

Q ss_pred             HHhCCCCEEEEeeccCCCccceee
Q psy15017         63 GSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        63 ~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .++.-....++..|.||||||.||
T Consensus       128 ~~~~~~~glilI~GpTGSGKTTtL  151 (358)
T TIGR02524       128 DAIAPQEGIVFITGATGSGKSTLL  151 (358)
T ss_pred             HHHhccCCEEEEECCCCCCHHHHH
Confidence            344445677888899999999988

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=90.83  E-value=0.2  Score=37.37  Aligned_cols=52  Identities=25%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         33 ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        33 ~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      -+..|+||..... .+++..+....  -+...-.+...-+|-||.+|+||||-|.
T Consensus        80 l~~~ytFdnFv~g-~~N~~A~aa~~--~va~~~g~~~nplfi~G~~GlGKTHLl~  131 (408)
T COG0593          80 LNPKYTFDNFVVG-PSNRLAYAAAK--AVAENPGGAYNPLFIYGGVGLGKTHLLQ  131 (408)
T ss_pred             CCCCCchhheeeC-CchHHHHHHHH--HHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence            3567888865543 35555554321  1112112223458889999999999883

>PRK06835 DNA replication protein DnaC; Validated

Probab=90.62  E-value=0.22  Score=36.09  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=20.1

Q ss_pred             HHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         58 ASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        58 ~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...++.+-... ..++-||.+|+||||-+
T Consensus       173 ~~f~~~f~~~~-~~Lll~G~~GtGKThLa  200 (329)
T PRK06835        173 KNFIENFDKNN-ENLLFYGNTGTGKTFLS  200 (329)
T ss_pred             HHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence            34555554443 45888999999999966

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=90.53  E-value=0.15  Score=37.57  Aligned_cols=26  Identities=35%  Similarity=0.354  Sum_probs=18.6

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +++.++. .++.++..|.||||||.||
T Consensus       141 ~~~~l~~-~~GlilI~G~TGSGKTT~l  166 (372)
T TIGR02525       141 LFNSLLP-AAGLGLICGETGSGKSTLA  166 (372)
T ss_pred             HHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence            3444443 3456777899999999998

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK06526 transposase; Provisional

Probab=90.47  E-value=0.15  Score=35.47  Aligned_cols=16  Identities=31%  Similarity=0.434  Sum_probs=13.9

Q ss_pred             EEeeccCCCccceeec
Q psy15017         72 ILAYGQTGSGKTYTMG   87 (97)
Q Consensus        72 v~ayG~t~sGKt~T~~   87 (97)
                      ++-+|.+|+||||.+.
T Consensus       101 lll~Gp~GtGKThLa~  116 (254)
T PRK06526        101 VVFLGPPGTGKTHLAI  116 (254)
T ss_pred             EEEEeCCCCchHHHHH
Confidence            6779999999999863

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=90.36  E-value=0.35  Score=38.39  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         49 QTTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        49 q~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...+|.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus        71 ~PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~  108 (693)
T cd01377          71 PPHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT  108 (693)
T ss_pred             CCCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence            4456643 333444554 589999999999999999763

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=90.27  E-value=0.38  Score=38.09  Aligned_cols=36  Identities=31%  Similarity=0.542  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......+. .+.|.||+.-|.+|||||.+.
T Consensus        69 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~  105 (674)
T cd01384          69 PHVFAI-ADAAYRAMINEGKSQSILVSGESGAGKTETT  105 (674)
T ss_pred             CCHHHH-HHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence            445543 333344444 588999999999999999864

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=90.22  E-value=0.17  Score=36.09  Aligned_cols=28  Identities=32%  Similarity=0.412  Sum_probs=19.1

Q ss_pred             HHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         58 ASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        58 ~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..++..++.+.. .++.-|.+|||||.+|
T Consensus       122 ~~~L~~~v~~~~-~ilI~G~tGSGKTTll  149 (299)
T TIGR02782       122 RDVLREAVLARK-NILVVGGTGSGKTTLA  149 (299)
T ss_pred             HHHHHHHHHcCC-eEEEECCCCCCHHHHH
Confidence            344555555443 4556799999999886

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd00124 MYSc Myosin motor domain

Probab=90.21  E-value=0.37  Score=38.06  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus        67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~  103 (679)
T cd00124          67 PHVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT  103 (679)
T ss_pred             CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence            455643 344455555 589999999999999999764

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>PHA00729 NTP-binding motif containing protein

Probab=90.20  E-value=0.34  Score=33.42  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             HHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         58 ASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        58 ~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+++.+..+.-..|+-+|.+|+||||-.
T Consensus         6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA   34 (226)
T PHA00729          6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYA   34 (226)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence            34566666655557889999999999854

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=90.13  E-value=0.43  Score=37.82  Aligned_cols=36  Identities=28%  Similarity=0.501  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......++ .+.|.||+.-|.+|||||.|.
T Consensus        73 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~  109 (677)
T cd01383          73 PHVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA  109 (677)
T ss_pred             CCHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence            445543 333444554 589999999999999999864

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=90.05  E-value=0.14  Score=33.74  Aligned_cols=23  Identities=43%  Similarity=0.590  Sum_probs=17.5

Q ss_pred             HhCCCCEEEEeeccCCCccceee
Q psy15017         64 SLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        64 ~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..+.+..++-||..|+|||..|
T Consensus        15 l~~~~~~~~~l~G~rg~GKTsLl   37 (234)
T PF01637_consen   15 LESGPSQHILLYGPRGSGKTSLL   37 (234)
T ss_dssp             HHH--SSEEEEEESTTSSHHHHH
T ss_pred             HHhhcCcEEEEEcCCcCCHHHHH
Confidence            34566778899999999999866

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=90.01  E-value=0.42  Score=37.81  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus        67 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~  103 (674)
T cd01378          67 PHIYAL-ADNAYRSMKSENENQCVIISGESGAGKTEAA  103 (674)
T ss_pred             CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence            446643 333344444 589999999999999999864

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=90.01  E-value=0.37  Score=38.42  Aligned_cols=36  Identities=19%  Similarity=0.342  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......++ .+.|.||+.-|.+|||||.|.
T Consensus        72 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~  108 (717)
T cd01382          72 PHVFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENT  108 (717)
T ss_pred             CcHHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence            345543 333444444 688999999999999999864

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=89.90  E-value=0.45  Score=37.66  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         49 QTTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        49 q~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...+|.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus        66 ~PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~  103 (671)
T cd01381          66 PPHIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTEST  103 (671)
T ss_pred             CCCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence            3445543 333444554 589999999999999999864

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=89.87  E-value=0.28  Score=35.32  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=20.9

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ++++++.--.-+.|+.-|.|||||+.||
T Consensus       117 evlk~la~~kRGLviiVGaTGSGKSTtm  144 (375)
T COG5008         117 EVLKDLALAKRGLVIIVGATGSGKSTTM  144 (375)
T ss_pred             HHHHHhhcccCceEEEECCCCCCchhhH
Confidence            4555555455566777799999999998

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=89.77  E-value=0.42  Score=37.93  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......++ .+.|.||+.-|.+|||||.|.
T Consensus        75 PHiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~  111 (692)
T cd01385          75 PHIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTEST  111 (692)
T ss_pred             CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence            445543 333344444 588999999999999999874

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=89.68  E-value=0.24  Score=35.71  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=17.8

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .++..++.+.. .++..|.+|||||.+|
T Consensus       139 ~~L~~~v~~~~-~ilI~G~tGSGKTTll  165 (319)
T PRK13894        139 EAIIAAVRAHR-NILVIGGTGSGKTTLV  165 (319)
T ss_pred             HHHHHHHHcCC-eEEEECCCCCCHHHHH
Confidence            34555555443 3445599999999776

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=89.67  E-value=0.34  Score=32.59  Aligned_cols=50  Identities=22%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         32 GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        32 ~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+..++||....  ..++..... +..+...  ......++-+|.+|+||||-+
T Consensus        10 ~~~~~~~~d~f~~--~~~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La   59 (227)
T PRK08903         10 GPPPPPTFDNFVA--GENAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLL   59 (227)
T ss_pred             CCCChhhhccccc--CCcHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence            3456678887662  222333322 2222221  234456788999999999865

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=89.53  E-value=0.5  Score=37.44  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus        68 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~  104 (677)
T cd01387          68 PHLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEAT  104 (677)
T ss_pred             CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence            446643 333444554 688999999999999999874

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=89.52  E-value=0.45  Score=37.77  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus        67 PHifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~  103 (691)
T cd01380          67 PHIFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSA  103 (691)
T ss_pred             CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence            445643 333344444 699999999999999999763

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=89.41  E-value=0.28  Score=35.53  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=17.4

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .++..+..+... ++.-|.||||||.+|
T Consensus       151 ~~L~~~v~~~~n-ili~G~tgSGKTTll  177 (332)
T PRK13900        151 EFLEHAVISKKN-IIISGGTSTGKTTFT  177 (332)
T ss_pred             HHHHHHHHcCCc-EEEECCCCCCHHHHH
Confidence            344444444332 455699999999887

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=89.38  E-value=0.26  Score=35.70  Aligned_cols=27  Identities=33%  Similarity=0.470  Sum_probs=17.9

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .++..++.... .++.-|.+|||||.+|
T Consensus       135 ~~L~~~v~~~~-nilI~G~tGSGKTTll  161 (323)
T PRK13833        135 SVIRSAIDSRL-NIVISGGTGSGKTTLA  161 (323)
T ss_pred             HHHHHHHHcCC-eEEEECCCCCCHHHHH
Confidence            34444444333 3556799999999887

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=89.31  E-value=0.26  Score=33.76  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=16.1

Q ss_pred             hCCCCEEEEeeccCCCccceee
Q psy15017         65 LEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        65 ~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +......+.-+|.+|+|||..+
T Consensus        39 ~~~~~~~~~l~G~~G~GKTtl~   60 (269)
T TIGR03015        39 LSQREGFILITGEVGAGKTTLI   60 (269)
T ss_pred             HhcCCCEEEEEcCCCCCHHHHH
Confidence            3333445667899999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=89.19  E-value=0.31  Score=32.00  Aligned_cols=27  Identities=37%  Similarity=0.425  Sum_probs=17.1

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +++...+... ..+.-.|.+|||||.+|
T Consensus        16 ~~l~~~v~~g-~~i~I~G~tGSGKTTll   42 (186)
T cd01130          16 AYLWLAVEAR-KNILISGGTGSGKTTLL   42 (186)
T ss_pred             HHHHHHHhCC-CEEEEECCCCCCHHHHH
Confidence            4444444432 23445699999999876

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=89.02  E-value=0.29  Score=36.80  Aligned_cols=49  Identities=20%  Similarity=0.316  Sum_probs=29.0

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .|+||..... .+++..|.. +..+.+.--..+| -++-||.+|+||||.|.
T Consensus       111 ~~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~  159 (450)
T PRK14087        111 ENTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLK  159 (450)
T ss_pred             ccchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence            4788765543 345556643 3333221111234 47889999999999883

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=88.84  E-value=0.42  Score=30.04  Aligned_cols=25  Identities=36%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +++.+++|.+  ++.-+.||+|||...
T Consensus         7 ~~~~i~~~~~--~li~aptGsGKT~~~   31 (169)
T PF00270_consen    7 AIEAIISGKN--VLISAPTGSGKTLAY   31 (169)
T ss_dssp             HHHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred             HHHHHHcCCC--EEEECCCCCccHHHH
Confidence            3445556666  667899999999765

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA

Probab=88.80  E-value=0.15  Score=35.21  Aligned_cols=20  Identities=35%  Similarity=0.423  Sum_probs=14.8

Q ss_pred             CCEEEEeeccCCCccceeec
Q psy15017         68 YNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .+..++..|..|||||.||.
T Consensus        12 ~~~~~lV~a~AGSGKT~~l~   31 (315)
T PF00580_consen   12 TEGPLLVNAGAGSGKTTTLL   31 (315)
T ss_dssp             -SSEEEEEE-TTSSHHHHHH
T ss_pred             CCCCEEEEeCCCCCchHHHH
Confidence            55567777889999999984

THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=88.39  E-value=0.45  Score=33.55  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=15.9

Q ss_pred             CCCCEEEEeeccCCCccceee
Q psy15017         66 EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+....++-||..|+|||+++
T Consensus        33 ~~~~~~lll~Gp~GtGKT~la   53 (337)
T PRK12402         33 SPNLPHLLVQGPPGSGKTAAV   53 (337)
T ss_pred             CCCCceEEEECCCCCCHHHHH
Confidence            344335778999999999876

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=88.21  E-value=0.32  Score=36.32  Aligned_cols=50  Identities=22%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..|+||.-.. ...+...|... ..+.+.--..+| .++-||.+|+||||.+
T Consensus       116 ~~~~tfd~fv~-g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~  165 (450)
T PRK00149        116 NPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLL  165 (450)
T ss_pred             CCCCccccccc-CCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence            35677775332 23455555442 222222112234 4778999999999987

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=88.02  E-value=0.33  Score=38.26  Aligned_cols=46  Identities=37%  Similarity=0.484  Sum_probs=32.3

Q ss_pred             eeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        37 F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      |....-|.+..+|...++.    +++.+-+|....+ .+|.+|||||+||-
T Consensus         2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a   47 (655)
T TIGR00631         2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMA   47 (655)
T ss_pred             ceeccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHH
Confidence            4445557788889888876    4555555642223 58999999999984

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=87.98  E-value=0.64  Score=38.47  Aligned_cols=20  Identities=40%  Similarity=0.597  Sum_probs=16.8

Q ss_pred             CCCEEEEeeccCCCccceee
Q psy15017         67 GYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        67 g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +-+.+++-||.+|+|||.|+
T Consensus       779 gpnnvLYIyG~PGTGKTATV  798 (1164)
T PTZ00112        779 GSNQILYISGMPGTGKTATV  798 (1164)
T ss_pred             CCCceEEEECCCCCCHHHHH
Confidence            44567889999999999886

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=87.90  E-value=0.91  Score=28.66  Aligned_cols=18  Identities=33%  Similarity=0.763  Sum_probs=14.3

Q ss_pred             CCEEEEee-ccCCCcccee
Q psy15017         68 YNATILAY-GQTGSGKTYT   85 (97)
Q Consensus        68 ~n~~v~ay-G~t~sGKt~T   85 (97)
                      ....|+++ |.+|+||+|.
T Consensus        51 ~KpLVlSfHG~tGtGKn~v   69 (127)
T PF06309_consen   51 RKPLVLSFHGWTGTGKNFV   69 (127)
T ss_pred             CCCEEEEeecCCCCcHHHH
Confidence            34567777 9999999984

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=87.80  E-value=0.39  Score=35.04  Aligned_cols=27  Identities=37%  Similarity=0.492  Sum_probs=17.4

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .++..+..... .++.-|.||||||.+|
T Consensus       153 ~~l~~~v~~~~-nilI~G~tGSGKTTll  179 (344)
T PRK13851        153 AFLHACVVGRL-TMLLCGPTGSGKTTMS  179 (344)
T ss_pred             HHHHHHHHcCC-eEEEECCCCccHHHHH
Confidence            34444444332 3556799999999887

>PRK09183 transposase/IS protein; Provisional

Probab=87.65  E-value=0.39  Score=33.47  Aligned_cols=19  Identities=37%  Similarity=0.494  Sum_probs=14.7

Q ss_pred             CCCCEEEEeeccCCCccceee
Q psy15017         66 EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .|.|  ++-+|.+|+||||-+
T Consensus       101 ~~~~--v~l~Gp~GtGKThLa  119 (259)
T PRK09183        101 RNEN--IVLLGPSGVGKTHLA  119 (259)
T ss_pred             cCCe--EEEEeCCCCCHHHHH
Confidence            4554  456899999999976

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=87.62  E-value=0.65  Score=34.97  Aligned_cols=50  Identities=28%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             CeeeeccEEecCCCcHHHHHHHHHHHHHHHH--hCC--CCEEEEeeccCCCccceee
Q psy15017         34 DKSFTFDYVFDMADVQTTIYELCAASLVAGS--LEG--YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~--~~g--~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..|+||.-... .+++..|.. +..+.+..  ..|  +| -++-||.+|+||||-+
T Consensus       105 ~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl  158 (445)
T PRK12422        105 DPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLM  158 (445)
T ss_pred             CccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHH
Confidence            456788865543 355555543 33333222  122  34 4678999999999987

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=87.48  E-value=0.18  Score=32.23  Aligned_cols=21  Identities=38%  Similarity=0.605  Sum_probs=12.1

Q ss_pred             CCCCEEEEeeccCCCccceee
Q psy15017         66 EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+...+++-.|..|+|||+.+
T Consensus        21 ~~~~~~~ll~G~~G~GKT~ll   41 (185)
T PF13191_consen   21 SGSPRNLLLTGESGSGKTSLL   41 (185)
T ss_dssp             S-----EEE-B-TTSSHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHH
Confidence            566777889999999999865

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=87.27  E-value=0.73  Score=37.09  Aligned_cols=36  Identities=31%  Similarity=0.486  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..||.- +......++ .+.|.||+.-|.+|||||.|.
T Consensus        67 PHifai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t  103 (767)
T cd01386          67 PHIYSL-AQTAYRALLETRRDQSIIFLGRSGAGKTTSC  103 (767)
T ss_pred             CCHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence            445543 333344444 589999999999999999764

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=86.62  E-value=0.32  Score=31.96  Aligned_cols=25  Identities=32%  Similarity=0.516  Sum_probs=15.6

Q ss_pred             HHHHhCCCCEEEEeeccCCCccceee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      |..++.... ..+.-|..|+|||+|+
T Consensus        10 i~~~~~~~~-~~~i~GpPGTGKT~~l   34 (236)
T PF13086_consen   10 IQSALSSNG-ITLIQGPPGTGKTTTL   34 (236)
T ss_dssp             HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred             HHHHHcCCC-CEEEECCCCCChHHHH
Confidence            445554433 3445799999999886

>PRK06547 hypothetical protein; Provisional

Probab=86.52  E-value=0.88  Score=29.81  Aligned_cols=25  Identities=40%  Similarity=0.404  Sum_probs=17.1

Q ss_pred             HHHHhCCCCEEEEeeccCCCcccee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      +..+..+....|...|.+|||||..
T Consensus         7 ~~~~~~~~~~~i~i~G~~GsGKTt~   31 (172)
T PRK06547          7 AARLCGGGMITVLIDGRSGSGKTTL   31 (172)
T ss_pred             HHHhhcCCCEEEEEECCCCCCHHHH
Confidence            3344445555666779999999864

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=86.41  E-value=0.54  Score=31.92  Aligned_cols=18  Identities=33%  Similarity=0.678  Sum_probs=12.4

Q ss_pred             CCEEEEeeccCCCcccee
Q psy15017         68 YNATILAYGQTGSGKTYT   85 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T   85 (97)
                      .+-.+++.|..|||||+.
T Consensus        18 ~~~~v~~~G~AGTGKT~L   35 (205)
T PF02562_consen   18 NNDLVIVNGPAGTGKTFL   35 (205)
T ss_dssp             H-SEEEEE--TTSSTTHH
T ss_pred             hCCeEEEECCCCCcHHHH
Confidence            344788999999999974

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=86.25  E-value=0.22  Score=32.93  Aligned_cols=16  Identities=44%  Similarity=0.669  Sum_probs=11.5

Q ss_pred             EEEeeccCCCccceee
Q psy15017         71 TILAYGQTGSGKTYTM   86 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~   86 (97)
                      .++.+|.+|||||..|
T Consensus        40 h~li~G~tgsGKS~~l   55 (205)
T PF01580_consen   40 HLLIAGATGSGKSTLL   55 (205)
T ss_dssp             SEEEE--TTSSHHHHH
T ss_pred             eEEEEcCCCCCccHHH
Confidence            4667999999999876

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria

Probab=86.09  E-value=0.99  Score=33.86  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.7

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      -++.+-+|....-|..|..||||||.+
T Consensus        40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l   66 (416)
T PF10923_consen   40 DLDRVADGGSSFKFIRGEYGSGKTFFL   66 (416)
T ss_pred             HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence            457788999999999999999999976

Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.

>PRK06921 hypothetical protein; Provisional

Probab=85.92  E-value=0.4  Score=33.58  Aligned_cols=19  Identities=42%  Similarity=0.567  Sum_probs=15.7

Q ss_pred             CEEEEeeccCCCccceeec
Q psy15017         69 NATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~~   87 (97)
                      ...++-||.+|+||||.+.
T Consensus       117 ~~~l~l~G~~G~GKThLa~  135 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLT  135 (266)
T ss_pred             CCeEEEECCCCCcHHHHHH
Confidence            4467789999999999873

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=85.65  E-value=0.27  Score=36.05  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=18.2

Q ss_pred             eccCCCccceee--cCCCCCCCCC
Q psy15017         75 YGQTGSGKTYTM--GTGTFSPISR   96 (97)
Q Consensus        75 yG~t~sGKt~T~--~G~~~~~~~~   96 (97)
                      .|.+|||||.+|  ..+.+.|..|
T Consensus        37 LGPSGcGKTTlLR~IAGfe~p~~G   60 (352)
T COG3842          37 LGPSGCGKTTLLRMIAGFEQPSSG   60 (352)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCc
Confidence            699999999988  6777777665

>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1

Probab=84.95  E-value=1.2  Score=31.43  Aligned_cols=32  Identities=34%  Similarity=0.360  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         54 ELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        54 ~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...+.|++ .++.-.+..+--||.|++|||.++
T Consensus       179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~  210 (286)
T PF06048_consen  179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL  210 (286)
T ss_pred             HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence            34445666 455566678888999999999766

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

>PTZ00014 myosin-A; Provisional

Probab=84.87  E-value=1.2  Score=36.13  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ....++ .+.|.||+.-|.+|+|||.+
T Consensus       173 Ay~~m~~~~~~QsIiiSGESGAGKTe~  199 (821)
T PTZ00014        173 ALENLHGVKKSQTIIVSGESGAGKTEA  199 (821)
T ss_pred             HHHHHHhcCCCceEEEEcCCCCCchHH
Confidence            344444 58899999999999999965

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=84.62  E-value=1.5  Score=30.89  Aligned_cols=16  Identities=50%  Similarity=0.640  Sum_probs=13.1

Q ss_pred             EEEeeccCCCccceee
Q psy15017         71 TILAYGQTGSGKTYTM   86 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~   86 (97)
                      .+.-.|.+|+|||+|+
T Consensus       196 vi~~vGptGvGKTTt~  211 (282)
T TIGR03499       196 VIALVGPTGVGKTTTL  211 (282)
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4555599999999987

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=84.56  E-value=0.99  Score=32.15  Aligned_cols=29  Identities=28%  Similarity=0.378  Sum_probs=18.8

Q ss_pred             HHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         57 AASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        57 ~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..+++..+.+... +.--|.+|||||..|
T Consensus       133 ~~~~l~~~v~~~~~-ili~G~tGsGKTTll  161 (308)
T TIGR02788       133 IKEFLRLAIASRKN-IIISGGTGSGKTTFL  161 (308)
T ss_pred             HHHHHHHHhhCCCE-EEEECCCCCCHHHHH
Confidence            34455555554443 334599999999865

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional

Probab=84.15  E-value=0.96  Score=33.71  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=18.3

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+  ++..++||||||..
T Consensus        34 ai~~~l~g~d--vi~~a~TGsGKT~a   57 (460)
T PRK11776         34 SLPAILAGKD--VIAQAKTGSGKTAA   57 (460)
T ss_pred             HHHHHhcCCC--EEEECCCCCcHHHH
Confidence            4456778887  55678999999964

>KOG2543|consensus

Probab=84.12  E-value=0.37  Score=36.00  Aligned_cols=16  Identities=44%  Similarity=0.945  Sum_probs=13.8

Q ss_pred             EEEeeccCCCccceee
Q psy15017         71 TILAYGQTGSGKTYTM   86 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~   86 (97)
                      -|+-||.+||||||++
T Consensus        32 ~~~iyG~sgTGKT~~~   47 (438)
T KOG2543|consen   32 IVHIYGHSGTGKTYLV   47 (438)
T ss_pred             eEEEeccCCCchhHHH
Confidence            3578999999999986

>KOG0989|consensus

Probab=83.83  E-value=1.2  Score=32.45  Aligned_cols=22  Identities=41%  Similarity=0.535  Sum_probs=16.5

Q ss_pred             hCCCCEEEEeeccCCCccceee
Q psy15017         65 LEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        65 ~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+.--..+-||..|+|||.|.
T Consensus        53 ~~~~lp~~LFyGPpGTGKTSta   74 (346)
T KOG0989|consen   53 LRRILPHYLFYGPPGTGKTSTA   74 (346)
T ss_pred             hhcCCceEEeeCCCCCcHhHHH
Confidence            3334445678999999999885

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=83.71  E-value=1  Score=33.69  Aligned_cols=39  Identities=26%  Similarity=0.281  Sum_probs=22.2

Q ss_pred             cHHHHHHHHHHHHHHHHhCC---C-CEEEEeeccCCCccceee
Q psy15017         48 VQTTIYELCAASLVAGSLEG---Y-NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        48 ~q~~v~~~~~~p~v~~~~~g---~-n~~v~ayG~t~sGKt~T~   86 (97)
                      .....|.....-+...+.+.   . ...|.=.|.||.|||.|+
T Consensus       178 ~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl  220 (407)
T COG1419         178 EDLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL  220 (407)
T ss_pred             chhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence            34444444444444444444   1 333333499999999997

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=83.37  E-value=1.4  Score=34.91  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......++ .+.+.||+.-|.+|||||.|.
T Consensus        67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~  103 (653)
T cd01379          67 PHIFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESA  103 (653)
T ss_pred             CcHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence            345643 223334444 588999999999999999874

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=83.33  E-value=1.7  Score=32.33  Aligned_cols=18  Identities=39%  Similarity=0.586  Sum_probs=15.6

Q ss_pred             CEEEEeeccCCCccceee
Q psy15017         69 NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~   86 (97)
                      ...++.+|.+|+|||.|+
T Consensus       174 ~~vi~lvGptGvGKTTT~  191 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTI  191 (388)
T ss_pred             CeEEEEECCCCCCHHHHH
Confidence            457788999999999987

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=83.10  E-value=0.81  Score=33.60  Aligned_cols=25  Identities=36%  Similarity=0.416  Sum_probs=17.9

Q ss_pred             HHHHhCCCCEEEEeeccCCCccceee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..+..+. +.++.-|-||||||.++
T Consensus       166 L~~av~~r-~NILisGGTGSGKTTlL  190 (355)
T COG4962         166 LRRAVGIR-CNILISGGTGSGKTTLL  190 (355)
T ss_pred             HHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence            33444444 56777899999999876

>PRK13764 ATPase; Provisional

Probab=82.90  E-value=0.64  Score=36.42  Aligned_cols=17  Identities=35%  Similarity=0.483  Sum_probs=14.5

Q ss_pred             EEEEeeccCCCccceee
Q psy15017         70 ATILAYGQTGSGKTYTM   86 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~   86 (97)
                      ..++..|.||||||+++
T Consensus       258 ~~ILIsG~TGSGKTTll  274 (602)
T PRK13764        258 EGILIAGAPGAGKSTFA  274 (602)
T ss_pred             CEEEEECCCCCCHHHHH
Confidence            34778899999999987

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=82.80  E-value=0.94  Score=28.49  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=16.2

Q ss_pred             HHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      +..+++.. ..++..|.+|+|||.++.
T Consensus        17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~   42 (201)
T smart00487       17 IEALLSGL-RDVILAAPTGSGKTLAAL   42 (201)
T ss_pred             HHHHHcCC-CcEEEECCCCCchhHHHH
Confidence            33444442 233456999999999663

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=82.26  E-value=1.3  Score=31.24  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=15.8

Q ss_pred             CCC-CEEEEeeccCCCccceee
Q psy15017         66 EGY-NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        66 ~g~-n~~v~ayG~t~sGKt~T~   86 (97)
                      .|. ...++-||..|+|||+.+
T Consensus        39 ~~~~~~~lll~G~~G~GKT~la   60 (316)
T PHA02544         39 KGRIPNMLLHSPSPGTGKTTVA   60 (316)
T ss_pred             cCCCCeEEEeeCcCCCCHHHHH
Confidence            454 345666899999999876

>PRK04328 hypothetical protein; Provisional

Probab=81.90  E-value=1.4  Score=30.47  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             HHHHHHhCC---CCEEEEeeccCCCccce
Q psy15017         59 SLVAGSLEG---YNATILAYGQTGSGKTY   84 (97)
Q Consensus        59 p~v~~~~~g---~n~~v~ayG~t~sGKt~   84 (97)
                      +-++.++.|   ..+.++.+|..|+|||-
T Consensus        10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~   38 (249)
T PRK04328         10 PGMDEILYGGIPERNVVLLSGGPGTGKSI   38 (249)
T ss_pred             hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence            457788875   57788899999999964

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional

Probab=81.74  E-value=1.3  Score=32.64  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=19.0

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..+++|.+  +++.+.||+|||..
T Consensus        31 ai~~~~~g~d--~l~~apTGsGKT~~   54 (434)
T PRK11192         31 AIPPALDGRD--VLGSAPTGTGKTAA   54 (434)
T ss_pred             HHHHHhCCCC--EEEECCCCChHHHH
Confidence            4556778887  66789999999975

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional

Probab=81.68  E-value=1.4  Score=32.91  Aligned_cols=24  Identities=42%  Similarity=0.628  Sum_probs=18.7

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..+++|.|  +++-..||||||..
T Consensus        31 ai~~il~g~d--vlv~apTGsGKTla   54 (456)
T PRK10590         31 AIPAVLEGRD--LMASAQTGTGKTAG   54 (456)
T ss_pred             HHHHHhCCCC--EEEECCCCCcHHHH
Confidence            4556788887  55678999999965

>KOG1547|consensus

Probab=81.59  E-value=2.7  Score=29.90  Aligned_cols=32  Identities=22%  Similarity=0.471  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHh-CCCCEEEEeeccCCCccce
Q psy15017         53 YELCAASLVAGSL-EGYNATILAYGQTGSGKTY   84 (97)
Q Consensus        53 ~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~   84 (97)
                      ++.++.+|-..++ .|+...|++-|++|.||+.
T Consensus        29 idtI~~Qm~~k~mk~GF~FNIMVVgqSglgkst   61 (336)
T KOG1547|consen   29 IDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKST   61 (336)
T ss_pred             HHHHHHHHHHHHHhccCceEEEEEecCCCCchh
Confidence            3455555555555 6999999999999999974

>PRK10536 hypothetical protein; Provisional

Probab=80.85  E-value=1.3  Score=31.35  Aligned_cols=41  Identities=22%  Similarity=0.288  Sum_probs=25.5

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .|.+..+-+-+..|.....        .+.+  +..++..|..|+||||..
T Consensus        51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La   91 (262)
T PRK10536         51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS   91 (262)
T ss_pred             hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence            3555555555555555443        2223  237889999999999865

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]

Probab=80.83  E-value=2.8  Score=34.16  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=27.8

Q ss_pred             HHHHHHHHHH-HHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         49 QTTIYELCAA-SLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        49 q~~v~~~~~~-p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      ....|+..+. .+++.+-+|.+-.++++ .||+|||+|-+
T Consensus       165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAi  203 (875)
T COG4096         165 GPRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAI  203 (875)
T ss_pred             cchHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHH
Confidence            4556665544 56777778999877775 69999999953

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=80.77  E-value=1.6  Score=29.32  Aligned_cols=29  Identities=28%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             HHHHHHHhCC---CCEEEEeeccCCCccceee
Q psy15017         58 ASLVAGSLEG---YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        58 ~p~v~~~~~g---~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+-++.++.|   ....+.-+|.+|+|||.-+
T Consensus         5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~   36 (235)
T cd01123           5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC   36 (235)
T ss_pred             chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence            3556777774   4566778899999998654

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PTZ00424 helicase 45; Provisional

Probab=80.74  E-value=1.5  Score=31.78  Aligned_cols=25  Identities=36%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ..+..+++|.+..  ..+.||||||..
T Consensus        57 ~ai~~i~~~~d~i--i~apTGsGKT~~   81 (401)
T PTZ00424         57 RGIKPILDGYDTI--GQAQSGTGKTAT   81 (401)
T ss_pred             HHHHHHhCCCCEE--EECCCCChHHHH
Confidence            3566778898854  568999999964

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=80.65  E-value=2  Score=30.10  Aligned_cols=41  Identities=22%  Similarity=0.189  Sum_probs=23.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHh--CCCCEEEEeeccCCCccceee
Q psy15017         45 MADVQTTIYELCAASLVAGSL--EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        45 ~~~~q~~v~~~~~~p~v~~~~--~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +...|+++-+.. ...+....  .+....++-||..|+|||+..
T Consensus         5 ~~iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la   47 (305)
T TIGR00635         5 EFIGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLA   47 (305)
T ss_pred             HHcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence            344566666552 22333322  222334667999999999865

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=80.65  E-value=1.5  Score=33.99  Aligned_cols=43  Identities=26%  Similarity=0.512  Sum_probs=29.6

Q ss_pred             CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCcc
Q psy15017         34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGK   82 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGK   82 (97)
                      ...|+||.+..++..-..+-..     + ......+++|+-.|.||+||
T Consensus       239 ~a~y~f~~Iig~S~~m~~~~~~-----a-kr~A~tdstVLi~GESGTGK  281 (560)
T COG3829         239 KAKYTFDDIIGESPAMLRVLEL-----A-KRIAKTDSTVLILGESGTGK  281 (560)
T ss_pred             ccccchhhhccCCHHHHHHHHH-----H-HhhcCCCCcEEEecCCCccH
Confidence            3568888888766433332222     1 34568899999999999999

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=80.60  E-value=1.7  Score=30.38  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=15.7

Q ss_pred             CCCCEEEEeeccCCCccceee
Q psy15017         66 EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+....++-||..|+|||+.+
T Consensus        35 ~~~~~~~ll~G~~G~GKt~~~   55 (319)
T PRK00440         35 EKNMPHLLFAGPPGTGKTTAA   55 (319)
T ss_pred             CCCCCeEEEECCCCCCHHHHH
Confidence            444444677999999998765

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional

Probab=80.59  E-value=1.5  Score=32.34  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=18.2

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..++.|.+.  ++-+.||||||..
T Consensus        38 aip~il~g~dv--i~~ApTGsGKTla   61 (423)
T PRK04837         38 ALPLTLAGRDV--AGQAQTGTGKTMA   61 (423)
T ss_pred             HHHHHhCCCcE--EEECCCCchHHHH
Confidence            45567889874  4567999999964

>PLN03025 replication factor C subunit; Provisional

Probab=80.54  E-value=1.7  Score=30.93  Aligned_cols=17  Identities=29%  Similarity=0.542  Sum_probs=13.6

Q ss_pred             EEEeeccCCCccceeec
Q psy15017         71 TILAYGQTGSGKTYTMG   87 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~~   87 (97)
                      .++-||..|+|||++..
T Consensus        36 ~lll~Gp~G~GKTtla~   52 (319)
T PLN03025         36 NLILSGPPGTGKTTSIL   52 (319)
T ss_pred             eEEEECCCCCCHHHHHH
Confidence            45569999999998763

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=80.45  E-value=3  Score=28.21  Aligned_cols=38  Identities=18%  Similarity=0.128  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCCEEEEeeccCCCccceee
Q psy15017         49 QTTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        49 q~~v~~~~~~p~v~~~~~-g~n~~v~ayG~t~sGKt~T~   86 (97)
                      -+.+|..++.-+....-+ +..-.+---|.+|||||..+
T Consensus        12 ~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~   50 (229)
T PRK09270         12 IEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA   50 (229)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence            445555555544433333 33444444599999998743

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family

Probab=80.33  E-value=1.7  Score=34.30  Aligned_cols=29  Identities=28%  Similarity=0.375  Sum_probs=18.7

Q ss_pred             HHHHHHHhC-----CCCEEEEeeccCCCccceeec
Q psy15017         58 ASLVAGSLE-----GYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        58 ~p~v~~~~~-----g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      ..+++.+..     |.+..++ .-.||||||.||.
T Consensus       248 ~~~~~~~~~~~~~~~~~~gli-~~~TGsGKT~t~~  281 (667)
T TIGR00348       248 KKIVESITRKTWGKDERGGLI-WHTQGSGKTLTML  281 (667)
T ss_pred             HHHHHHHHhcccCCCCceeEE-EEecCCCccHHHH
Confidence            345555554     3444443 3599999999994

Members of this family are assumed to differ from each other in DNA site specificity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	97
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		2e-16
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		2e-16
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		5e-14
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		2e-12
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		2e-12
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		4e-12
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		4e-12
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		4e-12
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		4e-12
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		6e-12
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		9e-12
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		1e-11
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		3e-11
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		4e-11
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		5e-11
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		2e-10
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		2e-10
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		6e-10
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		8e-10
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		1e-09
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		1e-09
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		2e-09
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		2e-09
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		2e-09
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		2e-09
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		2e-09
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		2e-09
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		2e-09
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		2e-09
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		2e-09
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		3e-09
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		3e-09
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		4e-09
1v8j_A	410	The Crystal Structure Of The Minimal Functional Dom		4e-09
2heh_A	387	Crystal Structure Of The Kif2c Motor Domain (Casp T		5e-09
3edl_D	331	Kinesin13-Microtubule Ring Complex Length = 331		6e-09
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		8e-09
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		9e-09
4a28_A	368	Eg5-2 Length = 368		9e-09
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		9e-09
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		9e-09
4a1z_A	368	Eg5-1 Length = 368		9e-09
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		9e-09
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		1e-08
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		1e-08
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		3e-08
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		2e-07
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		2e-07
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		2e-07
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		2e-07
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		4e-07
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		7e-07
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		1e-06
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		2e-06
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		1e-05
1ry6_A	360	Crystal Structure Of Internal Kinesin Motor Domain		3e-04

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           ++RP   +E++   + C  V PG  +VTLG D+ F F  V      Q  +Y+ C   L+ 
Sbjct: 18  RVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLE 77
Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTGTFSPI 94
              EG+NAT+ AYGQTGSGKTYTMG  + + +
Sbjct: 78  AFFEGFNATVFAYGQTGSGKTYTMGEASVASL 109

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 3   KIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVA 62
           ++RP   +E++   + C  V PG  +VTLG D+ F F  V      Q  +Y+ C   L+ 
Sbjct: 18  RVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLE 77
Query: 63  GSLEGYNATILAYGQTGSGKTYTMGTGTFSPI 94
              EG+NAT+ AYGQTGSGKTYTMG  + + +
Sbjct: 78  AFFEGFNATVFAYGQTGSGKTYTMGEASVASL 109

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 1   MCKIRPQSAREVIDMCRVCTFVTP--GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAA 58
           MC+ RP +  E++   R   F+    GE  V +G  K + FD V      Q  +Y  CA 
Sbjct: 11  MCRFRPLNEAEIL---RGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYNACAK 67
Query: 59  SLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
            +V   LEGYN TI AYGQT SGKT+TM      P
Sbjct: 68  QIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDP 102

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 1  MCKIRPQSAREVIDMCRVCTFVTP--GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAA 58
          MC+ RP +  EV    R   ++    GE  V + A K + FD VF  +  Q  +Y  CA 
Sbjct: 12 MCRFRPLNESEV---NRGDKYIAKFQGEDTVVI-ASKPYAFDRVFQSSTSQEQVYNDCAK 67
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTM 86
           +V   LEGYN TI AYGQT SGKT+TM
Sbjct: 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 1  MCKIRPQSAREVIDMCRVCTFVTP--GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAA 58
          MC+ RP +  EV    R   ++    GE  V + A K + FD VF  +  Q  +Y  CA 
Sbjct: 12 MCRFRPLNESEV---NRGDKYIAKFQGEDTVVI-ASKPYAFDRVFQSSTSQEQVYNDCAK 67
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTM 86
           +V   LEGYN TI AYGQT SGKT+TM
Sbjct: 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2   CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
           C+IRP    E   MC  CT+    E  V L +           + F+FD VF     Q+ 
Sbjct: 62  CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 119
Query: 52  IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           I+E+  + L+  +L+GYN  I AYGQTGSGKTYTM
Sbjct: 120 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTM 153

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2   CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
           C+IRP    E   MC  CT+    E  V L +           + F+FD VF     Q+ 
Sbjct: 59  CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 116
Query: 52  IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           I+E+  + L+  +L+GYN  I AYGQTGSGKTYTM
Sbjct: 117 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTM 150

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2   CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
           C+IRP    E   MC  CT+    E  V L +           + F+FD VF     Q+ 
Sbjct: 73  CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 130
Query: 52  IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           I+E+  + L+  +L+GYN  I AYGQTGSGKTYTM
Sbjct: 131 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTM 164

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2   CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
           C+IRP    E   MC  CT+    E  V L +           + F+FD VF     Q+ 
Sbjct: 65  CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 122
Query: 52  IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           I+E+  + L+  +L+GYN  I AYGQTGSGKTYTM
Sbjct: 123 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTM 156

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 1  MCKIRPQSAREVIDMCRVCTFVTP--GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAA 58
          MC+ RP +  EV    R   +V    GE  V + A K + FD VF  +  Q  +Y  CA 
Sbjct: 12 MCRFRPLNESEV---NRGDKYVAKFQGEDTVMI-ASKPYAFDRVFQSSTSQEQVYNDCAK 67
Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTM 86
           +V   LEGYN TI AYGQT SGK +TM
Sbjct: 68 KIVKDVLEGYNGTIFAYGQTSSGKNHTM 95

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 2   CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGA----------DKSFTFDYVFDMADVQTT 51
           C+IRP    E   MC  CT+    E  V L +           + F+FD VF     Q+ 
Sbjct: 62  CRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 119
Query: 52  IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           I+E+  + L+  +L+GYN  I AYGQ+GSGKTYTM
Sbjct: 120 IFEM-VSPLIQSALDGYNICIFAYGQSGSGKTYTM 153

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 1   MCKIRPQSAREVIDMCR-VCTFVTPGEPQV-TLGADKSFTFDYVFDMADVQTTIYELCAA 58
           + + RPQ+  E+    + + TF  P    V +  A  SFTFD VFDM+  Q+ I++    
Sbjct: 11  VARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIK 70
Query: 59  SLVAGSLEGYNATILAYGQTGSGKTYT-MGTGTFSPISR 96
             V   L GYN T+ AYGQTG+GK+YT MGT    P  R
Sbjct: 71  PTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGR 109

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 1   MCKIRPQSAREV---------IDMCRVCTFVTPGEPQVTLGADK----SFTFDYVFDMAD 47
           + + RP +ARE          +D       V P E + +    K    +FTFD V+D   
Sbjct: 9   IVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTS 68
Query: 48  VQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
               I++     L+   LEG+N+TI AYGQTG+GKT+TMG     P
Sbjct: 69  CNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP 114

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 22  VTPGEPQVTLGA-DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGS 80
           VT   P+   G   K+FTFD V+D +  Q  +Y+     L+   L+G+N T+ AYGQTG+
Sbjct: 54  VTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGT 113
Query: 81  GKTYTM 86
           GKTYTM
Sbjct: 114 GKTYTM 119

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
          KSF FD VF   +    +YE  AA ++  +++GYN TI AYGQT SGKTYTM
Sbjct: 44 KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 3   KIRPQSARE-VIDMCRVCTFVTPGEPQVTLGAD----KSFTFDYVFDMADVQTTIYELCA 57
           ++RP ++RE  I    V   V P E       D    K FTFD  F     Q  +Y +  
Sbjct: 30  RVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVV 89
Query: 58  ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           + L+   L GYN T+ AYGQTG+GKT+TM
Sbjct: 90  SPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           K+FTFD V+D    Q  +Y+     LV   L+G+N TI AYGQTG+GKTYTM
Sbjct: 68  KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           K++TFD VF  +  Q  +Y    A ++   + GYNATI AYGQTG+GKT+TM  G  SP
Sbjct: 64  KTYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTM-EGERSP 121

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 2   CKIRPQSARE--VIDMCRVCTFVTP-GEPQVTLGADKS----FTFDYVFDMADVQTTIYE 54
           C+IRP    E   I+  +V  F    G+  +T+    S    F FD +FD  +    I++
Sbjct: 34  CRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFDQQETNDEIFK 93
Query: 55  LCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
                L+  SL+GYN  I AYGQTGSGKTYTM
Sbjct: 94  E-VGQLIQSSLDGYNVCIFAYGQTGSGKTYTM 124

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 2   CKIRPQSAREVIDMCRVCTFV---TPGEPQVTLGADK------SFTFDYVFDMADVQTTI 52
           C++RP    E  DM  +         G   +T+  ++      +F FD +F+ +     I
Sbjct: 11  CRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEI 70
Query: 53  YELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           +E     LV  SL+GYN  I AYGQTGSGKTYTM
Sbjct: 71  FEEIR-QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1   MCKIRP-QSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAAS 59
           +C+ RP   + E      V  F    E      A K + FD VF     Q  +Y   A S
Sbjct: 16  VCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNEAAKS 75
Query: 60  LVAGSLEGYNATILAYGQTGSGKTYTM 86
           +V   L GYN TI AYGQT SGKT+TM
Sbjct: 76  IVTDVLAGYNGTIFAYGQTSSGKTHTM 102

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 34  DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           D  F FD VFD    Q+ ++E     ++   L GYN T+LAYG TG+GKT+TM
Sbjct: 71  DLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           F FD +FD  D    +++     LV  SL+GYN  I AYGQTGSGKT+TM
Sbjct: 110 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTM 158

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 3   KIRPQSARE-------VIDMC-RVCTFVTPGEPQVTLGADKSFTFDYVF----DMADV-- 48
           ++RP ++RE       +I M     T V P +P+ T    KSF+FDY +       D+  
Sbjct: 11  RVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHTSPEDINY 67
Query: 49  --QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
             Q  +Y      ++  + EGYN  I AYGQTG+GK+YTM
Sbjct: 68  ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 3   KIRPQSARE-------VIDMC-RVCTFVTPGEPQVTLGADKSFTFDYVF----DMADV-- 48
           ++RP ++RE       +I M     T V P +P+ T    KSF+FDY +       D+  
Sbjct: 11  RVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHTSPEDINY 67
Query: 49  --QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
             Q  +Y      ++  + EGYN  I AYGQTG+GK+YTM
Sbjct: 68  ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           F FD +FD  D    +++     LV  SL+GYN  I AYGQTGSGKT+TM
Sbjct: 54  FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           F FD +FD  D    +++     LV  SL+GYN  I AYGQTGSGKT+TM
Sbjct: 54  FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           F FD +FD  D    +++     LV  SL+GYN  I AYGQTGSGKT+TM
Sbjct: 65  FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 113

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           F FD +FD  D    +++     LV  SL+GYN  I AYGQTGSGKT+TM
Sbjct: 54  FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           F FD +FD  D    +++     LV  SL+GYN  I AYGQTGSGKT+TM
Sbjct: 53  FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 101

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 3   KIRPQSARE-------VIDMC-RVCTFVTPGEPQVTLGADKSFTFDYVF----DMADV-- 48
           ++RP ++RE       +I M     T V P +P+ T    KSF+FDY +       D+  
Sbjct: 27  RVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHTSPEDINY 83
Query: 49  --QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
             Q  +Y      ++  + EGYN  I AYGQTG+GK+YTM
Sbjct: 84  ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 123

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 34  DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGT 90
           D SF  D V   A  Q  +YE  A  +V+ +L+GYN TI+ YGQTG+GKTYTM   T
Sbjct: 71  DWSFKLDGVLHDAS-QDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGAT 126

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 19/100 (19%)
Query: 3   KIRPQSARE-------VIDMC-RVCTFVTPGEPQVTLGADKSFTFDYVF----DMADV-- 48
           ++RP ++RE       +I M     T V P +P+ T    KSF+FDY +       D+  
Sbjct: 11  RVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHTSPEDINY 67
Query: 49  --QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
             Q  +Y      ++  + EGYN  I AYGQTG+GK+YTM
Sbjct: 68  ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107

>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 34  DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
           +++F FD+ FD       +Y   A  LV    EG  AT  AYGQTGSGKT+TMG
Sbjct: 120 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173

>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 34  DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
           +++F FD+ FD       +Y   A  LV    EG  AT  AYGQTGSGKT+TMG
Sbjct: 100 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153

>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 34  DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
           +++F FD+ FD       +Y   A  LV    EG  AT  AYGQTGSGKT+TMG
Sbjct: 48  NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 101

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           K++TFD VF  +  Q  +Y      ++   + GYN TI AYGQTG+GKT+TM  G  SP
Sbjct: 55  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 112

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           K++TFD VF  +  Q  +Y      ++   + GYN TI AYGQTG+GKT+TM  G  SP
Sbjct: 64  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 121

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           K++TFD VF  +  Q  +Y      ++   + GYN TI AYGQTG+GKT+TM  G  SP
Sbjct: 64  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 121

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           K++TFD VF  +  Q  +Y      ++   + GYN TI AYGQTG+GKT+TM  G  SP
Sbjct: 63  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 120

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           K++TFD VF  +  Q  +Y      ++   + GYN TI AYGQTG+GKT+TM  G  SP
Sbjct: 64  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 121

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           K++TFD VF  +  Q  +Y      ++   + GYN TI AYGQTG+GKT+TM  G  SP
Sbjct: 64  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 121

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           K++TFD VF  +  Q  +Y      ++   + GYN TI AYGQTG+GKT+TM  G  SP
Sbjct: 66  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 123

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 34  DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFS 92
           +++F FDY FD +     +Y   A  LV    E   AT  AYGQTGSGKT+TMG G FS
Sbjct: 138 NQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMG-GDFS 195

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35  KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           K++TFD VF  +  Q  +Y      ++   + GYN TI AYGQTG+GKT+TM  G  SP
Sbjct: 49  KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM-EGERSP 106

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 2   CKIRP-----QSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELC 56
           C+IRP      S RE   +  V  F    E        K   +D VFDM   Q  I+E  
Sbjct: 19  CRIRPLNEKESSEREKQMLTTVDEFTV--EHPWKDDKRKQHIYDRVFDMRASQDDIFE-D 75
Query: 57  AASLVAGSLEGYNATILAYGQTGSGKTYTM 86
              LV  +++GYN  I AYGQTGSGKT+T+
Sbjct: 76  TKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 105

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
           F FD+ F     Q  +Y+     LV   LEG+  T LAYGQTG+GK+Y+MG
Sbjct: 63  FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMG 113

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
           F FD+ F     Q  +Y+     LV   LEG+  T LAYGQTG+GK+Y+MG
Sbjct: 63  FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMG 113

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 2   CKIRPQSAREVIDMCRVCTFVTPGEPQVTLGAD---KSFTFDYVFDMADVQTTIYELCAA 58
           C++RP   +E+I   R             L  D   K   +D VFD    Q  ++E    
Sbjct: 11  CRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE-DTK 69
Query: 59  SLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
            LV  +++GYN  I AYGQTGSGKT+T+     +P
Sbjct: 70  YLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP 104

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTG 89
           F+FD VF     Q  ++E  A  LV  +L+GY   I AYGQTGSGKT+TM  G
Sbjct: 85  FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGG 136

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 3   KIRPQSARE-------VIDMCRVCTFVTPGEPQVT----LGADKSFTFDYVFDMADV--- 48
           +IRP + RE       V+D+      + P    ++     G  K F +D+ F   D    
Sbjct: 8   RIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVK 67
Query: 49  -----QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
                Q  +++    +++  + +GYNA I AYGQTGSGK+YTM
Sbjct: 68  EKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 32 GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
          G   SF  D VF     Q  +++   A LV   ++G+N  I AYGQTG+GKTYTM
Sbjct: 45 GKPVSFELDKVFSPQASQQDVFQEVQA-LVTSCIDGFNVCIFAYGQTGAGKTYTM 98

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 34  DKSFTFDYVF-------DMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           +KSFTFD  F       +    Q  +Y+      +  + EGY+  I AYGQTGSGK+YTM
Sbjct: 95  EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG--TGTFSPI 94
           F FD +F+       ++E  +  L+  SL+G N  + AYGQTGSGKT+TM   T    P+
Sbjct: 432 FLFDKIFEREQSNDLVFEELS-QLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPL 490
Query: 95  S 95
           S
Sbjct: 491 S 491

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           + FD  +     Q  IY      ++   LEG NA++LAYG TG+GKT+TM
Sbjct: 67  YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116

>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 37  FTFDYVFDMADVQTTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTM 86
           F  D VFD      T+YE     L+    E G   +  AYGQTGSGKTYTM
Sbjct: 52  FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	6e-45
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	8e-41
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	2e-39
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	8e-39
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	3e-38
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	1e-36
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	9e-35
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	2e-34
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	3e-34
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	4e-33
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	6e-33
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	8e-33
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	8e-32
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	9e-32
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	2e-31
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	7e-31
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	7e-31
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	9e-31
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	1e-29
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	3e-29
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	4e-29
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	8e-29
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	1e-28
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	2e-28
3u06_A	412	Protein claret segregational; motor domain, stalk	2e-28
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	5e-26

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  146 bits (371), Expect = 6e-45
 Identities = 38/95 (40%), Positives = 54/95 (56%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL 60
             ++RP   +E++   + C  V PG  +VTLG D+ F F  V      Q  +Y+ C   L
Sbjct: 16  ALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPL 75

Query: 61  VAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPIS 95
           +    EG+NAT+ AYGQTGSGKTYTMG  + + + 
Sbjct: 76  LEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLL 110

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  136 bits (344), Expect = 8e-41
 Identities = 27/89 (30%), Positives = 38/89 (42%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL 60
             +  P           V  F    + +  +     F FD+ F     Q  +Y+     L
Sbjct: 27  AVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPL 86

Query: 61  VAGSLEGYNATILAYGQTGSGKTYTMGTG 89
           V   LEG+  T LAYGQTG+GK+Y+MG  
Sbjct: 87  VDKLLEGFQCTALAYGQTGTGKSYSMGMT 115

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  132 bits (335), Expect = 2e-39
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------GADKSFTFDYVFDMADVQTTI 52
           + + RP +  E            P   +V++         + K++TFD VF  +  Q  +
Sbjct: 13  VVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDV 72

Query: 53  YELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           Y      ++   + GYN TI AYGQTG+GKT+TM       
Sbjct: 73  YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 113

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  131 bits (332), Expect = 8e-39
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-----GADKSFTFDYVFDMADVQTTIYEL 55
             ++RP ++RE          V      VT         K FTFD  F     Q  +Y +
Sbjct: 28  YVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSV 87

Query: 56  CAASLVAGSLEGYNATILAYGQTGSGKTYTMGTG 89
             + L+   L GYN T+ AYGQTG+GKT+TM   
Sbjct: 88  VVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGN 121

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  129 bits (327), Expect = 3e-38
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-ADKSFTFDYVFDMADVQTTIYELCAAS 59
           +C+ RP +  E     +          +  +  A K + FD VF     Q  +Y   A S
Sbjct: 16  VCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNEAAKS 75

Query: 60  LVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISR 96
           +V   L GYN TI AYGQT SGKT+TM       + +
Sbjct: 76  IVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQ 112

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  124 bits (314), Expect = 1e-36
 Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL 60
           MC+ RP +  EV    +       GE  V +   K + FD VF  +  Q  +Y  CA  +
Sbjct: 12  MCRFRPLNESEVNRGDKYIAKF-QGEDTVVIA-SKPYAFDRVFQSSTSQEQVYNDCAKKI 69

Query: 61  VAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISR 96
           V   LEGYN TI AYGQT SGKT+TM      P   
Sbjct: 70  VKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  120 bits (304), Expect = 9e-35
 Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTI 52
           + + RP + +E          V     QV++           K+FTFD V+D    Q  +
Sbjct: 26  VVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFEL 85

Query: 53  YELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISR 96
           Y+     LV   L+G+N TI AYGQTG+GKTYTM      P  R
Sbjct: 86  YDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKR 129

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  119 bits (301), Expect = 2e-34
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 1  MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-GADKSFTFDYVFDMADVQTTIYELCAAS 59
            ++RP ++RE         +       +      KSF FD VF   +    +YE  AA 
Sbjct: 9  CVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAP 68

Query: 60 LVAGSLEGYNATILAYGQTGSGKTYTM 86
          ++  +++GYN TI AYGQT SGKTYTM
Sbjct: 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  120 bits (302), Expect = 3e-34
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-----GADKSFTFDYVFDMADVQTTIYEL 55
             ++RP            C                      + FD  +     Q  IY  
Sbjct: 26  AVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAG 85

Query: 56  CAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
               ++   LEG NA++LAYG TG+GKT+TM
Sbjct: 86  SVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  116 bits (292), Expect = 4e-33
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--ADKSFTFDYVFDMADVQTTIYELCAA 58
           + + RPQ+  E+    +        +        A  SFTFD VFDM+  Q+ I++    
Sbjct: 11  VARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIK 70

Query: 59  SLVAGSLEGYNATILAYGQTGSGKTYTM-GTGTFSPISR 96
             V   L GYN T+ AYGQTG+GK+YTM GT    P  R
Sbjct: 71  PTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGR 109

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  116 bits (292), Expect = 6e-33
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGAD-----KSFTFDYVFDMADV------- 48
             ++RP ++RE+    +    ++     +          KSF+FDY +            
Sbjct: 9   AVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYA 68

Query: 49  -QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            Q  +Y      ++  + EGYN  I AYGQTG+GK+YTM
Sbjct: 69  SQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  115 bits (290), Expect = 8e-33
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 13/100 (13%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-------------ADKSFTFDYVFDMAD 47
           + + RP +ARE  +       +     QV +                ++FTFD V+D   
Sbjct: 9   IVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTS 68

Query: 48  VQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG 87
               I++     L+   LEG+N+TI AYGQTG+GKT+TMG
Sbjct: 69  CNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMG 108

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  112 bits (283), Expect = 8e-32
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 24/110 (21%)

Query: 4   IRPQSAREVIDMCRVCTFVT--------PGEPQVTL---------------GADKSFTFD 40
           +RP++ +E          V         P + +V+                  D  F FD
Sbjct: 18  VRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFD 77

Query: 41  YVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM-GTG 89
            VFD    Q+ ++E     ++   L GYN T+LAYG TG+GKT+TM G+ 
Sbjct: 78  AVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA 127

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  113 bits (285), Expect = 9e-32
 Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 14/102 (13%)

Query: 4   IRPQSAREVIDMCRVCTFVTPGEPQVTL------------GADKSFTFDYVFDMADVQTT 51
            RP + +E+         V P +  + +              +++F FD+ FD       
Sbjct: 79  KRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEV 137

Query: 52  IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           +Y   A  LV    EG  AT  AYGQTGSGKT+TMG G  S 
Sbjct: 138 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG-GDLSG 178

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  112 bits (282), Expect = 2e-31
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 14/102 (13%)

Query: 4   IRPQSAREVIDMCRVCTFVTPGEPQVTL------------GADKSFTFDYVFDMADVQTT 51
            RP + +E+         + P +  + +              +++F FD+ FD       
Sbjct: 59  KRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEV 117

Query: 52  IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSP 93
           +Y   A  LV    EG  AT  AYGQTGSGKT+TMG G  S 
Sbjct: 118 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG-GDLSG 158

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  111 bits (280), Expect = 7e-31
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 27/113 (23%)

Query: 4   IRPQSAREVIDMCRVCTFVTPGEPQVTL-------------------GADKSFTFDYVFD 44
           +R    RE+         + P   + +L                     +KSFTFD  F 
Sbjct: 46  VRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFW 105

Query: 45  MADV-------QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM-GTG 89
             +        Q  +Y+      +  + EGY+  I AYGQTGSGK+YTM GT 
Sbjct: 106 SHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP 158

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  110 bits (277), Expect = 7e-31
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 20/109 (18%)

Query: 1   MCKIRPQSARE-------VIDMCRVCTFVTPGEPQVTLGA----DKSFTFDYVFDMADV- 48
             +IRP + RE       V+D+      + P    ++ G      K F +D+ F   D  
Sbjct: 6   AVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDES 65

Query: 49  -------QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM-GTG 89
                  Q  +++    +++  + +GYNA I AYGQTGSGK+YTM GT 
Sbjct: 66  VKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA 114

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =  110 bits (277), Expect = 9e-31
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 1  MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL---GADKSFTFDYVFDMADVQTTIYELCA 57
           C++RP   +E+I   R             L      K   +D VFD    Q  ++E   
Sbjct: 10 YCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE-DT 68

Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            LV  +++GYN  I AYGQTGSGKT+T+
Sbjct: 69 KYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  107 bits (270), Expect = 1e-29
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------GADKSFTFDYVFDMADVQT 50
             +IRP           +       +                    F FD +FD  D   
Sbjct: 64  YLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNV 123

Query: 51  TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            +++     LV  SL+GYN  I AYGQTGSGKT+TM
Sbjct: 124 DVFK-EVGQLVQSSLDGYNVAIFAYGQTGSGKTFTM 158

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score =  105 bits (264), Expect = 4e-29
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 1  MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-----GADKSFTFDYVFDMADVQTTIYEL 55
          + ++RP +  +              +    +     G   SF  D VF     Q  +++ 
Sbjct: 9  IARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQ- 67

Query: 56 CAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
             +LV   ++G+N  I AYGQTG+GKTYTM
Sbjct: 68 EVQALVTSCIDGFNVCIFAYGQTGAGKTYTM 98

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score =  105 bits (263), Expect = 8e-29
 Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 2   CKIRPQSAREVIDMCRVCTFVTPGEPQVTL------------GADKSFTFDYVFDMADVQ 49
            + RP S  E          V      + +                 F  D VFD     
Sbjct: 6   VRKRPLSELEKKKKDSDIITV-KNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDN 64

Query: 50  TTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTMGTGTFSP 93
            T+YE     L+    E G   +  AYGQTGSGKTYTM  G+   
Sbjct: 65  FTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML-GSQPY 108

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  104 bits (262), Expect = 1e-28
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------GADKSFTFDYVFDMADVQT 50
            C+IRP           +       +                    F FD +FD  D   
Sbjct: 8   YCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNV 67

Query: 51  TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            +++     LV  SL+GYN  I AYGQTGSGKT+TM
Sbjct: 68  DVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  103 bits (260), Expect = 2e-28
 Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL---------GADKSFTFDYVFDMADVQTT 51
            C++RP    E  DM  +                          +F FD +F+ +     
Sbjct: 10  YCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKE 69

Query: 52  IYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           I+E     LV  SL+GYN  I AYGQTGSGKTYTM
Sbjct: 70  IFE-EIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM 103

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score =  104 bits (262), Expect = 2e-28
 Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------GADKSFTFDYVFDMADVQTTI 52
            C+IRP    E   MC   T+      ++             + F+FD VF     Q+ I
Sbjct: 64  FCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDI 123

Query: 53  YELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
           +E   + L+  +L+GYN  I AYGQTGSGKTYTM
Sbjct: 124 FE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTM 156

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score = 97.7 bits (244), Expect = 5e-26
 Identities = 33/119 (27%), Positives = 43/119 (36%), Gaps = 24/119 (20%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------------------GADKSFT 38
            C++RP    E      +  F +                                   F+
Sbjct: 27  FCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFS 86

Query: 39  FDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM-GTGTFSPISR 96
           FD VF     Q  ++E   A LV  +L+GY   I AYGQTGSGKT+TM G     P   
Sbjct: 87  FDRVFPPGSGQDEVFE-EIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLE 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	99.97
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	99.97
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	99.97
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	99.97
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	99.97
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	99.97
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	99.97
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	99.97
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	99.96
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	99.96
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	99.96
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	99.96
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	99.96
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	99.96
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	99.96
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	99.96
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	99.96
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	99.96
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	99.96
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	99.96
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	99.95
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	99.95
3u06_A	412	Protein claret segregational; motor domain, stalk	99.95
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	99.95
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	99.94
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	99.94
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	99.93
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	99.89
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	99.63
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.13
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.96
2qgz_A	308	Helicase loader, putative primosome component; str	94.81
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.0
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.61
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	93.22
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	92.63
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	92.14
1p9r_A	418	General secretion pathway protein E; bacterial typ	90.87
3bos_A	242	Putative DNA replication factor; P-loop containing	90.26
2chg_A	226	Replication factor C small subunit; DNA-binding pr	90.0
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	89.51
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	89.38
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	89.19
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	89.19
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	89.04
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	88.84
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	88.62
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	88.59
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	88.56
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	88.49
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	88.35
3bor_A	237	Human initiation factor 4A-II; translation initiat	88.25
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	87.85
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	87.47
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	87.15
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	86.98
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	86.92
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	86.91
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	86.89
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	86.88
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	86.87
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	86.76
3co5_A	143	Putative two-component system transcriptional RES	86.51
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	86.49
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	86.38
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	86.16
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	86.15
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	86.0
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	85.93
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	85.52
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	85.37
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	85.35
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	85.25
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	85.05
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	84.95
2eyu_A	261	Twitching motility protein PILT; pilus retraction	84.91
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	84.82
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	84.67
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	84.65
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	84.53
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	84.49
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	84.4
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	84.4
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	84.32
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	84.12
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	84.11
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	84.06
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	84.04
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	84.01
3h1t_A	590	Type I site-specific restriction-modification syst	83.98
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	83.77
4etp_B	333	Spindle POLE BODY-associated protein VIK1; kinesin	83.71
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	83.48
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	83.01
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	82.99
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	82.95
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	82.94
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	82.73
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	82.67
3b6e_A	216	Interferon-induced helicase C domain-containing P;	82.6
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	82.52
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	82.03
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	81.82
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	81.63
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	81.53
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	81.37
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	81.13
2ewv_A	372	Twitching motility protein PILT; pilus retraction	80.97
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	80.88
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	80.84
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	80.83
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	80.8
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	80.75
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	80.54
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	80.24
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	80.13
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	80.08

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=99.97  E-value=5.7e-32  Score=192.76  Aligned_cols=90  Identities=42%  Similarity=0.753  Sum_probs=84.1

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGS   80 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~s   80 (97)
                      +|||||++.+|...+...|+.+.++...+.+..++.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||
T Consensus        16 ~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGS   95 (344)
T 4a14_A           16 ALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGS   95 (344)
T ss_dssp             EEEECCCCHHHHHTTCCBCEEEEGGGTEEEETTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTS
T ss_pred             EEEecccchHHHhccCeeEEEEcCCCceEEecccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCC
Confidence            59999999999988888898888888888888999999999999999999999999999999999999999999999999


Q ss_pred             ccceeecCCC
Q psy15017         81 GKTYTMGTGT   90 (97)
Q Consensus        81 GKt~T~~G~~   90 (97)
                      ||||||+|+.
T Consensus        96 GKTyTm~G~~  105 (344)
T 4a14_A           96 GKTYTMGEAS  105 (344)
T ss_dssp             SHHHHHCC--
T ss_pred             CceEeecccc
Confidence            9999999874

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=99.97  E-value=6.7e-32  Score=192.75  Aligned_cols=94  Identities=36%  Similarity=0.580  Sum_probs=82.0

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC-------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG-------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEG   67 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~-------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g   67 (97)
                      +||+||++.+|...+...++.+.+.+.++.+.             ..+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus         9 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G   88 (350)
T 2vvg_A            9 IVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEG   88 (350)
T ss_dssp             EEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTT
T ss_pred             EEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCC
Confidence            59999999999887777777776655555442             25789999999999999999999999999999999


Q ss_pred             CCEEEEeeccCCCccceeecCCCCCCC
Q psy15017         68 YNATILAYGQTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~~G~~~~~~   94 (97)
                      +|+||||||||||||||||+|+.++++
T Consensus        89 ~n~tifAYGqTGSGKTyTm~G~~~~~G  115 (350)
T 2vvg_A           89 FNSTIFAYGQTGAGKTWTMGGNKEEPG  115 (350)
T ss_dssp             CCEEEEEECSTTSSHHHHHTBCSSSBC
T ss_pred             CceeEEeecCCCCCCCEEeecCCccCc
Confidence            999999999999999999999987765

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=99.97  E-value=4.2e-31  Score=189.82  Aligned_cols=93  Identities=38%  Similarity=0.522  Sum_probs=83.0

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI   72 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v   72 (97)
                      +|||||++.+|...+...++.+.+.+..+.+.        ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+||
T Consensus        26 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ti  105 (372)
T 3b6u_A           26 VVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTI  105 (372)
T ss_dssp             EEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEE
T ss_pred             EEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeE
Confidence            59999999999888877888877766666653        2578999999999999999999999999999999999999


Q ss_pred             EeeccCCCccceeecCCCCCC
Q psy15017         73 LAYGQTGSGKTYTMGTGTFSP   93 (97)
Q Consensus        73 ~ayG~t~sGKt~T~~G~~~~~   93 (97)
                      ||||||||||||||+|...+|
T Consensus       106 fAYGqTGSGKTyTM~G~~~~~  126 (372)
T 3b6u_A          106 FAYGQTGTGKTYTMEGIRGDP  126 (372)
T ss_dssp             EEEESTTSSHHHHHTBCTTSG
T ss_pred             EeecCCCCCCCEeEecCCCCc
Confidence            999999999999999976554

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=99.97  E-value=3.7e-31  Score=189.45  Aligned_cols=91  Identities=32%  Similarity=0.519  Sum_probs=80.7

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI   72 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v   72 (97)
                      +|||||++.+|...+...++.+.+....+.+.        ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+||
T Consensus        13 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ti   92 (359)
T 1x88_A           13 VVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTI   92 (359)
T ss_dssp             EEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEE
Confidence            59999999999887777777777666555442        2579999999999999999999999999999999999999


Q ss_pred             EeeccCCCccceeecCCCC
Q psy15017         73 LAYGQTGSGKTYTMGTGTF   91 (97)
Q Consensus        73 ~ayG~t~sGKt~T~~G~~~   91 (97)
                      ||||||||||||||+|+..
T Consensus        93 fAYGqTGSGKTyTM~G~~~  111 (359)
T 1x88_A           93 FAYGQTGTGKTFTMEGERS  111 (359)
T ss_dssp             EEEECTTSSHHHHHTBCCC
T ss_pred             EEeCCCCCCCceEEeccCC
Confidence            9999999999999999865

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=99.97  E-value=5.3e-31  Score=186.60  Aligned_cols=91  Identities=42%  Similarity=0.640  Sum_probs=80.4

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGS   80 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~s   80 (97)
                      +|||||++.+|...+...++.+.. +..+.+ ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||
T Consensus        12 ~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~-~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGS   89 (325)
T 1bg2_A           12 MCRFRPLNESEVNRGDKYIAKFQG-EDTVVI-ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSS   89 (325)
T ss_dssp             EEEECCCCHHHHHHTCCBCCEEET-TTEEEE-TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTS
T ss_pred             EEEcCCCChhHhccCCeeEEEECC-CCeEEE-CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCC
Confidence            599999999998877766666544 444555 578999999999999999999999999999999999999999999999


Q ss_pred             ccceeecCCCCCC
Q psy15017         81 GKTYTMGTGTFSP   93 (97)
Q Consensus        81 GKt~T~~G~~~~~   93 (97)
                      ||||||+|+..+|
T Consensus        90 GKTyTm~G~~~~~  102 (325)
T 1bg2_A           90 GKTHTMEGKLHDP  102 (325)
T ss_dssp             SHHHHHTBSTTCT
T ss_pred             CCceEecccCCCc
Confidence            9999999987665

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=99.97  E-value=5.6e-31  Score=188.29  Aligned_cols=94  Identities=33%  Similarity=0.505  Sum_probs=78.6

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCe--------EE---------------eCCCeeeeccEEecCCCcHHHHHHHHH
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQ--------VT---------------LGADKSFTFDYVFDMADVQTTIYELCA   57 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~--------~~---------------~~~~~~F~fd~vf~~~~~q~~v~~~~~   57 (97)
                      +|||||++.+|...+...++.+.++...        +.               ..+++.|.||+||+++++|++||+.++
T Consensus        15 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~   94 (355)
T 3lre_A           15 VVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTT   94 (355)
T ss_dssp             EEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHHHHHTTH
T ss_pred             EEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHHHHHHHH
Confidence            5999999999998877776665432211        10               113468999999999999999999999


Q ss_pred             HHHHHHHhCCCCEEEEeeccCCCccceeecCCCCCCC
Q psy15017         58 ASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        58 ~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~   94 (97)
                      .|+|+.+++|+|+||||||||||||||||+|+.++|+
T Consensus        95 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~G  131 (355)
T 3lre_A           95 KPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPG  131 (355)
T ss_dssp             HHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBC
T ss_pred             HHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCC
Confidence            9999999999999999999999999999999988775

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=99.97  E-value=1.3e-30  Score=186.94  Aligned_cols=92  Identities=36%  Similarity=0.510  Sum_probs=80.2

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCC--CCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPG--EPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQT   78 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t   78 (97)
                      +|||||++.+|...+...++.+..+  +..+.+ ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||
T Consensus        16 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~-~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqT   94 (365)
T 2y65_A           16 VCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQT   94 (365)
T ss_dssp             EEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE-TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECST
T ss_pred             EEEcCcCChhHhccCCceEEEeCCCCCCcEEEE-CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCC
Confidence            5999999999987777767666543  344444 5789999999999999999999999999999999999999999999


Q ss_pred             CCccceeecCCCCCC
Q psy15017         79 GSGKTYTMGTGTFSP   93 (97)
Q Consensus        79 ~sGKt~T~~G~~~~~   93 (97)
                      ||||||||+|...++
T Consensus        95 GSGKTyTm~G~~~~~  109 (365)
T 2y65_A           95 SSGKTHTMEGVIGDS  109 (365)
T ss_dssp             TSSHHHHHTBSTTCT
T ss_pred             CCCCceEEecCCCCc
Confidence            999999999976554

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=99.97  E-value=1e-30  Score=191.23  Aligned_cols=94  Identities=33%  Similarity=0.494  Sum_probs=79.6

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe-------------------CCCeeeeccEEecCC-------CcHHHHHH
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-------------------GADKSFTFDYVFDMA-------DVQTTIYE   54 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-------------------~~~~~F~fd~vf~~~-------~~q~~v~~   54 (97)
                      +|||||++.+|...+...++.+++....+.+                   ...+.|+||+|||++       ++|++||+
T Consensus        43 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~  122 (443)
T 2owm_A           43 VVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYD  122 (443)
T ss_dssp             EEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCCCHHHHHH
T ss_pred             EEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCCCHHHHHH
Confidence            5999999999987777666666554433222                   136899999999874       79999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEeeccCCCccceeecCCCCCCC
Q psy15017         55 LCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        55 ~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~   94 (97)
                      .++.|+|+.+++|+|+||||||||||||||||+|+.++++
T Consensus       123 ~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~G  162 (443)
T 2owm_A          123 SLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPG  162 (443)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCC
T ss_pred             hhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCc
Confidence            9999999999999999999999999999999999988765

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=99.96  E-value=8.7e-31  Score=187.94  Aligned_cols=91  Identities=31%  Similarity=0.520  Sum_probs=76.6

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------CCeeeeccEEecCC--------CcHHHHHHHHHHHHHHHHhC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------ADKSFTFDYVFDMA--------DVQTTIYELCAASLVAGSLE   66 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------~~~~F~fd~vf~~~--------~~q~~v~~~~~~p~v~~~~~   66 (97)
                      +|||||++.+|...+...++.+... ......      ..+.|.||+|||++        ++|++||+.++.|+|+.+++
T Consensus         9 ~vRvRP~~~~E~~~~~~~~v~~~~~-~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~   87 (366)
T 2zfi_A            9 AVRVRPFNSREMSRDSKCIIQMSGS-TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFE   87 (366)
T ss_dssp             EEEECCCCHHHHHTTCCBCEEEETT-EEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHT
T ss_pred             EEECCCCChhhccCCCCeEEEECCC-cEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhc
Confidence            5999999999987776666665443 222221      35899999999997        79999999999999999999


Q ss_pred             CCCEEEEeeccCCCccceeecCCCCC
Q psy15017         67 GYNATILAYGQTGSGKTYTMGTGTFS   92 (97)
Q Consensus        67 g~n~~v~ayG~t~sGKt~T~~G~~~~   92 (97)
                      |+|+||||||||||||||||+|+.+.
T Consensus        88 G~N~tifAYGqTGSGKTyTm~G~~~~  113 (366)
T 2zfi_A           88 GYNVCIFAYGQTGAGKSYTMMGKQEK  113 (366)
T ss_dssp             TCCEEEEEECSTTSSHHHHHTBCSGG
T ss_pred             CCeeEEEEeCCCCCCCceEeeCCCcc
Confidence            99999999999999999999998643

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=99.96  E-value=4.9e-31  Score=188.25  Aligned_cols=94  Identities=34%  Similarity=0.491  Sum_probs=79.3

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEE-eCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVT-LGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTG   79 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~   79 (97)
                      +|||||++.+|...+...++.+..++..+. ....+.|.||+|||++++|++||+.++.|+|+.+++|+|+|||||||||
T Consensus         9 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTG   88 (349)
T 1t5c_A            9 CVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTA   88 (349)
T ss_dssp             EEEECCCSCSSCTTTTCCCCCEEEETTEEEETTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTT
T ss_pred             EEECCCCChhhhccCCCcEEEEeCCCCeEEECCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCC
Confidence            599999999997665554444433344333 3457899999999999999999999999999999999999999999999


Q ss_pred             CccceeecCCCCCCC
Q psy15017         80 SGKTYTMGTGTFSPI   94 (97)
Q Consensus        80 sGKt~T~~G~~~~~~   94 (97)
                      |||||||+|+.++++
T Consensus        89 SGKTyTM~G~~~~~G  103 (349)
T 1t5c_A           89 SGKTYTMMGSEDHLG  103 (349)
T ss_dssp             SSHHHHHTBCSSSBC
T ss_pred             CCCCeEEecCCCCCc
Confidence            999999999987765

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=99.96  E-value=3.7e-30  Score=185.02  Aligned_cols=91  Identities=35%  Similarity=0.478  Sum_probs=78.1

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe-----CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEee
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-----GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAY   75 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ay   75 (97)
                      +|||||++.+|.......++.+......+..     ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||||
T Consensus        28 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAY  107 (373)
T 2wbe_C           28 YVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAY  107 (373)
T ss_dssp             EEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEee
Confidence            5999999999987766667666544332221     23689999999999999999999999999999999999999999


Q ss_pred             ccCCCccceeecCCCC
Q psy15017         76 GQTGSGKTYTMGTGTF   91 (97)
Q Consensus        76 G~t~sGKt~T~~G~~~   91 (97)
                      |||||||||||+|+..
T Consensus       108 GqTGSGKTyTm~G~~~  123 (373)
T 2wbe_C          108 GQTGTGKTHTMVGNET  123 (373)
T ss_dssp             CSTTSSHHHHHTBSCS
T ss_pred             cCCCCCcceecccCcc
Confidence            9999999999999875

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=99.96  E-value=5e-30  Score=183.38  Aligned_cols=89  Identities=38%  Similarity=0.589  Sum_probs=78.1

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe---CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeecc
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL---GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQ   77 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~   77 (97)
                      +|||||++.+|...+...++.+.+++. +.+   ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||+
T Consensus        11 ~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGq   89 (355)
T 1goj_A           11 VARFRPQNRVEIESGGQPIVTFQGPDT-CTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQ   89 (355)
T ss_dssp             EEEECCCCHHHHTTTCCBCEEECSTTE-EEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECS
T ss_pred             EEECCCCChHHhhcCCceEEEEcCCCe-EEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECC
Confidence            599999999998877777777655443 333   2468999999999999999999999999999999999999999999


Q ss_pred             CCCccceeecCCC
Q psy15017         78 TGSGKTYTMGTGT   90 (97)
Q Consensus        78 t~sGKt~T~~G~~   90 (97)
                      |||||||||+|+.
T Consensus        90 TGSGKTyTm~G~~  102 (355)
T 1goj_A           90 TGAGKSYTMMGTS  102 (355)
T ss_dssp             TTSSHHHHHTBSC
T ss_pred             CCCCcceEeecCC
Confidence            9999999999964

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.7e-30  Score=187.44  Aligned_cols=93  Identities=27%  Similarity=0.349  Sum_probs=66.0

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe------CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL------GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILA   74 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~------~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~a   74 (97)
                      +|||||++.+|.......|+...+.. .+.+      ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||
T Consensus        26 ~vRvRP~~~~E~~~~~~~~v~~~~~~-~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifA  104 (388)
T 3bfn_A           26 AVRLRPFVDGTAGASDPPCVRGMDSC-SLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLA  104 (388)
T ss_dssp             EEEECCCC------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEE
T ss_pred             EEECCCCChhhhccCCCceEEecCCC-eEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEee
Confidence            59999999999766555665543322 2222      1347899999999999999999999999999999999999999


Q ss_pred             eccCCCccceeecCCCCCCC
Q psy15017         75 YGQTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        75 yG~t~sGKt~T~~G~~~~~~   94 (97)
                      ||||||||||||+|+.++++
T Consensus       105 YGqTGSGKTyTM~G~~~~~G  124 (388)
T 3bfn_A          105 YGPTGAGKTHTMLGSPEQPG  124 (388)
T ss_dssp             ESCTTSSHHHHHTBCSSSBC
T ss_pred             ecCCCCCCCeEeecCccccc
Confidence            99999999999999987765

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=99.96  E-value=3e-30  Score=186.10  Aligned_cols=89  Identities=33%  Similarity=0.485  Sum_probs=73.9

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGY   68 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~   68 (97)
                      +|||||++.+|...+...++.+.. +..+.+.            ..+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus        56 ~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~  134 (387)
T 2heh_A           56 CVRKRPLNKQELAKKEIDVISIPS-KCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG  134 (387)
T ss_dssp             EEEECCCCHHHHHTTCCBCEECCB-SSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTC
T ss_pred             EEECCCCChHHhccCCceEEEECC-CCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHHHhcCC
Confidence            599999999998777666666543 3333321            246899999999999999999999999999999999


Q ss_pred             CEEEEeeccCCCccceeecCCC
Q psy15017         69 NATILAYGQTGSGKTYTMGTGT   90 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~~G~~   90 (97)
                      |+||||||||||||||||+|+.
T Consensus       135 N~tifAYGQTGSGKTyTM~G~~  156 (387)
T 2heh_A          135 KATCFAYGQTGSGKTHTMGGDL  156 (387)
T ss_dssp             EEEEEEESCTTSSHHHHHC---
T ss_pred             ceEEEEecCCCCCCCeEeccCC
Confidence            9999999999999999999964

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=99.96  E-value=4.6e-30  Score=186.20  Aligned_cols=89  Identities=34%  Similarity=0.478  Sum_probs=76.2

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGY   68 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~   68 (97)
                      +|||||++.+|...+...++.+.++ ..+.+.            ..+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus        76 ~vRvRPl~~~E~~~~~~~~v~~~~~-~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~  154 (410)
T 1v8k_A           76 CVRKRPLNKQELAKKEIDVISVPSK-CLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG  154 (410)
T ss_dssp             EEEECCCCHHHHHTTCCBCEECCSS-SEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTC
T ss_pred             EEEeCCCChhHhhcCCccEEEECCC-CEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCC
Confidence            5999999999988777766666433 333321            246899999999999999999999999999999999


Q ss_pred             CEEEEeeccCCCccceeecCCC
Q psy15017         69 NATILAYGQTGSGKTYTMGTGT   90 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~~G~~   90 (97)
                      |+||||||||||||||||+|+.
T Consensus       155 N~tifAYGQTGSGKTyTM~G~~  176 (410)
T 1v8k_A          155 KATCFAYGQTGSGKTHTMGGDL  176 (410)
T ss_dssp             EEEEEEEESTTSSHHHHHHCBC
T ss_pred             ceeEEeecCCCCCCCeEeecCC
Confidence            9999999999999999999964

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=99.96  E-value=1.2e-29  Score=181.36  Aligned_cols=92  Identities=35%  Similarity=0.506  Sum_probs=76.5

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe-------------CCCeeeeccEEecC--------CCcHHHHHHHHHHH
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-------------GADKSFTFDYVFDM--------ADVQTTIYELCAAS   59 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-------------~~~~~F~fd~vf~~--------~~~q~~v~~~~~~p   59 (97)
                      +|||||++.+|.......++.++.. . +.+             ...+.|.||+|||+        .++|++||+.++.|
T Consensus         6 ~vRvRPl~~~E~~~~~~~vv~~~~~-~-~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~   83 (354)
T 3gbj_A            6 AVRIRPMNRRETDLHTKCVVDVDAN-K-VILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGEN   83 (354)
T ss_dssp             EEEECCCCHHHHHHTCCBCEEEETT-E-EEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHH
T ss_pred             EEECCCCChhhhccCCceEEEeCCC-e-EEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhhHH
Confidence            5999999999987766666555432 2 221             13688999999964        46899999999999


Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceeecCCCCCCC
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~~~~   94 (97)
                      +|+.+++|+|+||||||+|||||||||+|+.++|+
T Consensus        84 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~G  118 (354)
T 3gbj_A           84 ILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPG  118 (354)
T ss_dssp             HHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBC
T ss_pred             HHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCc
Confidence            99999999999999999999999999999988765

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=99.96  E-value=1.2e-29  Score=180.79  Aligned_cols=89  Identities=29%  Similarity=0.417  Sum_probs=69.9

Q ss_pred             CEEecCCCchhhhcCCceEEEEcC-CCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTP-GEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTG   79 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~   79 (97)
                      +|||||++..|.. ....++...+ .+........+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||||||||
T Consensus        27 ~vRvRP~~~~e~~-~~~~~v~~~~~~~~~~~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTG  105 (344)
T 3dc4_A           27 AVREAPYRQFLGR-REPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTG  105 (344)
T ss_dssp             EEEECCCC--------CCSEECCSSSCSSEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTT
T ss_pred             EEECCCCCccccc-CCceEEEecCCCCCceEEecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCC
Confidence            5899999988743 3444555443 2333333468999999999999999999999999999999999999999999999


Q ss_pred             CccceeecCCC
Q psy15017         80 SGKTYTMGTGT   90 (97)
Q Consensus        80 sGKt~T~~G~~   90 (97)
                      |||||||+|+.
T Consensus       106 SGKTyTM~g~~  116 (344)
T 3dc4_A          106 TGKSYSMGMTP  116 (344)
T ss_dssp             SSHHHHHTCSC
T ss_pred             CCCCeEEcCCC
Confidence            99999998875

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=179.88  Aligned_cols=93  Identities=30%  Similarity=0.517  Sum_probs=75.4

Q ss_pred             CEEecCCCchhhhcC-CceEEEEcCCCC-eEEe---CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEee
Q psy15017          1 MCKIRPQSAREVIDM-CRVCTFVTPGEP-QVTL---GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAY   75 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~-~~~~~~~~~~~~-~~~~---~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ay   75 (97)
                      +|||||++.+|.... ...++.+++.+. .+.+   ...+.|.||+||+++++|++||+. +.|+|+.+++|+|+|||||
T Consensus         9 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAY   87 (330)
T 2h58_A            9 IARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAY   87 (330)
T ss_dssp             EEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEE
T ss_pred             EEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCCEEEEEeE
Confidence            599999999986432 233445544333 3322   245789999999999999999998 5899999999999999999


Q ss_pred             ccCCCccceeecCCCCCCC
Q psy15017         76 GQTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        76 G~t~sGKt~T~~G~~~~~~   94 (97)
                      |||||||||||+|+.++|+
T Consensus        88 GqTGSGKTyTm~G~~~~~G  106 (330)
T 2h58_A           88 GQTGAGKTYTMEGTAENPG  106 (330)
T ss_dssp             SSTTSSHHHHHTBCSSSBC
T ss_pred             CCCCCCCcEEEecCCCCCc
Confidence            9999999999999988765

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=99.96  E-value=1.8e-29  Score=180.82  Aligned_cols=89  Identities=33%  Similarity=0.373  Sum_probs=75.9

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhC-C
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLE-G   67 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~-g   67 (97)
                      +|||||++.+|...+...++.+.++ ..+.+.            ..+.|.||+||+++++|++||+.++.|+|+++++ |
T Consensus         5 ~vRvRP~~~~E~~~~~~~~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G   83 (360)
T 1ry6_A            5 VVRKRPLSELEKKKKDSDIITVKNN-CTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENG   83 (360)
T ss_dssp             EEEECCCCHHHHHTTCCBCEEEEET-TEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHC
T ss_pred             EEECCCCChHHhccCCceEEEECCC-CEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCC
Confidence            5999999999988777777666443 333321            2468999999999999999999999999999996 9


Q ss_pred             CCEEEEeeccCCCccceeecCCC
Q psy15017         68 YNATILAYGQTGSGKTYTMGTGT   90 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~~G~~   90 (97)
                      +|+||||||||||||||||+|+.
T Consensus        84 ~n~tifAYGqTGSGKTyTM~G~~  106 (360)
T 1ry6_A           84 CVCSCFAYGQTGSGKTYTMLGSQ  106 (360)
T ss_dssp             CEEEEEEECCTTSSHHHHHHBSS
T ss_pred             ceeEEEeeCCCCCCCCEEEecCC
Confidence            99999999999999999999975

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=99.96  E-value=3.8e-29  Score=179.55  Aligned_cols=92  Identities=36%  Similarity=0.556  Sum_probs=76.1

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe----CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeec
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYG   76 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG   76 (97)
                      +|||||++.+|.......++. ..++..+..    ...+.|.||+||+++++|++||+. +.|+|+.+++|+|+||||||
T Consensus        10 ~vRvRP~~~~E~~~~~~~~~~-~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYG   87 (369)
T 3cob_A           10 YCRLRPLCEKEIIAKERNAIR-SVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYG   87 (369)
T ss_dssp             EEEECCCCHHHHHTTCCBCEE-ECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEE
T ss_pred             EEECCCCChhhccCCCcEEEE-cCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEEC
Confidence            599999999997665543332 233333332    134899999999999999999999 69999999999999999999


Q ss_pred             cCCCccceeecCCCCCCC
Q psy15017         77 QTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        77 ~t~sGKt~T~~G~~~~~~   94 (97)
                      +|||||||||+|+.++|+
T Consensus        88 qTGSGKTyTM~G~~~~~G  105 (369)
T 3cob_A           88 QTGSGKTFTIYGADSNPG  105 (369)
T ss_dssp             CTTSSHHHHHTBCSSSBC
T ss_pred             CCCCCCeEeecCCCCCCc
Confidence            999999999999987765

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=99.95  E-value=5e-29  Score=178.41  Aligned_cols=86  Identities=34%  Similarity=0.521  Sum_probs=67.8

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe--------------CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------------GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLE   66 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~--------------~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~   66 (97)
                      ||||||++..|..     ++...++...+.+              ...++|.||+||+ +++|++||+.++.|+|+.+++
T Consensus        29 ~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l~  102 (359)
T 3nwn_A           29 FVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALD  102 (359)
T ss_dssp             EEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHT
T ss_pred             EEEcCCCCccccc-----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHHHhC
Confidence            6999999877642     1122222222221              1346899999998 578999999999999999999


Q ss_pred             CCCEEEEeeccCCCccceeecCCCCC
Q psy15017         67 GYNATILAYGQTGSGKTYTMGTGTFS   92 (97)
Q Consensus        67 g~n~~v~ayG~t~sGKt~T~~G~~~~   92 (97)
                      |+|+||||||||||||||||+|...+
T Consensus       103 G~N~tifAYGQTGSGKTyTM~G~~~~  128 (359)
T 3nwn_A          103 GYNGTIMCYGQTGAGKTYTMMGATEN  128 (359)
T ss_dssp             TCCEEEEEEESTTSSHHHHHTBCSSC
T ss_pred             CCCEEEEEeCCCCCCccEEeCCccCC
Confidence            99999999999999999999997655

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=99.95  E-value=8.2e-29  Score=178.16  Aligned_cols=90  Identities=37%  Similarity=0.588  Sum_probs=68.6

Q ss_pred             CEEecCCCchhhhcCCceEEEEc------CCCCeEEeC----------------CCeeeeccEEecCCCcHHHHHHHHHH
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVT------PGEPQVTLG----------------ADKSFTFDYVFDMADVQTTIYELCAA   58 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~------~~~~~~~~~----------------~~~~F~fd~vf~~~~~q~~v~~~~~~   58 (97)
                      +|||||++.+|.......+....      .++..+.+.                ..+.|.||+||+++++|++||+. +.
T Consensus        27 ~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~-v~  105 (376)
T 2rep_A           27 FCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEE-IA  105 (376)
T ss_dssp             EEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHHHHHH-HH
T ss_pred             EEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchhhhhh-HH
Confidence            59999999999754322111100      122222221                24689999999999999999998 46


Q ss_pred             HHHHHHhCCCCEEEEeeccCCCccceeecCCCC
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYTMGTGTF   91 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~~G~~~   91 (97)
                      |+|+.+++|+|+||||||||||||||||+|+..
T Consensus       106 ~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~  138 (376)
T 2rep_A          106 MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPG  138 (376)
T ss_dssp             HHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSS
T ss_pred             HHHHHhcCCCceEEEEeCCCCCCCceEeecCCC
Confidence            899999999999999999999999999999764

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=99.95  E-value=9.5e-29  Score=179.55  Aligned_cols=91  Identities=44%  Similarity=0.733  Sum_probs=72.6

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC----------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG----------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNA   70 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~----------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~   70 (97)
                      +|||||++..|.....  +.....++..+.+.          ..+.|.||+||+++++|++||+. +.|+|+.+++|+|+
T Consensus        64 ~vRvRP~~~~E~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~G~n~  140 (412)
T 3u06_A           64 FCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNI  140 (412)
T ss_dssp             EEEECCCCGGGTTSCB--CEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCE
T ss_pred             EEEcCCCCchhccCcc--eEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHHCCCce
Confidence            6999999999865432  22222233333321          24789999999999999999985 67999999999999


Q ss_pred             EEEeeccCCCccceeecCCCCCCC
Q psy15017         71 TILAYGQTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~~G~~~~~~   94 (97)
                      ||||||+|||||||||+|..++++
T Consensus       141 tifAYGqTGSGKTyTM~G~~~~~G  164 (412)
T 3u06_A          141 CIFAYGQTGSGKTYTMDGVPESVG  164 (412)
T ss_dssp             EEEEESSTTSSHHHHHTEETTEEC
T ss_pred             EEEEecCCCCCCeeEecCCCCCCc
Confidence            999999999999999999887664

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=99.95  E-value=2.9e-28  Score=173.95  Aligned_cols=89  Identities=38%  Similarity=0.623  Sum_probs=70.8

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCC---CCeEEeC------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPG---EPQVTLG------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNAT   71 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~---~~~~~~~------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~   71 (97)
                      +|||||++.+|.......++...++   ...+.+.      ..+.|.||+||+++++|++||+. +.|+|+.+++|+|+|
T Consensus        10 ~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~l~G~n~t   88 (349)
T 3t0q_A           10 YCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVC   88 (349)
T ss_dssp             EEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHH-HHHHHHGGGTTCEEE
T ss_pred             EEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHH-HHHHHHHHHCCccee
Confidence            6999999999976654444432111   1123321      14689999999999999999997 579999999999999


Q ss_pred             EEeeccCCCccceeecCCC
Q psy15017         72 ILAYGQTGSGKTYTMGTGT   90 (97)
Q Consensus        72 v~ayG~t~sGKt~T~~G~~   90 (97)
                      |||||||||||||||+|+.
T Consensus        89 ifAYGqTGSGKTyTm~g~~  107 (349)
T 3t0q_A           89 IFAYGQTGSGKTYTMLNAG  107 (349)
T ss_dssp             EEEECSTTSSHHHHHHSTT
T ss_pred             EEEeCCCCCCCceEeCCCC
Confidence            9999999999999999864

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=99.94  E-value=8.2e-28  Score=171.51  Aligned_cols=87  Identities=37%  Similarity=0.573  Sum_probs=67.6

Q ss_pred             CEEecCCCc-hhhhcCCceEEEEcC---C--CCeEEeC------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC
Q psy15017          1 MCKIRPQSA-REVIDMCRVCTFVTP---G--EPQVTLG------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGY   68 (97)
Q Consensus         1 ~vRvRP~~~-~e~~~~~~~~~~~~~---~--~~~~~~~------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~   68 (97)
                      +|||||++. +|.  ....++.+..   .  ...+.+.      ..+.|.||+||+++++|++||+. +.|+|+.+++|+
T Consensus         8 ~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~   84 (347)
T 1f9v_A            8 YCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGY   84 (347)
T ss_dssp             EEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHH-HHHHHGGGGGTC
T ss_pred             EEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHH-HHHHHHHhcCCc
Confidence            599999987 442  2233333321   1  1223332      35899999999999999999998 579999999999


Q ss_pred             CEEEEeeccCCCccceeecCCC
Q psy15017         69 NATILAYGQTGSGKTYTMGTGT   90 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~~G~~   90 (97)
                      |+||||||||||||||||+|..
T Consensus        85 n~tifAYGqTGSGKTyTM~G~~  106 (347)
T 1f9v_A           85 NVCIFAYGQTGSGKTFTMLNPG  106 (347)
T ss_dssp             CEEEEEECCTTSSHHHHHHSTT
T ss_pred             eeEEEEECCCCCCCcEeccCCC
Confidence            9999999999999999999863

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.7e-27  Score=169.89  Aligned_cols=89  Identities=34%  Similarity=0.516  Sum_probs=66.1

Q ss_pred             CEEecCCCchh-hhcCCceEEEE-cCCCC--eEEeC------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCE
Q psy15017          1 MCKIRPQSARE-VIDMCRVCTFV-TPGEP--QVTLG------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNA   70 (97)
Q Consensus         1 ~vRvRP~~~~e-~~~~~~~~~~~-~~~~~--~~~~~------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~   70 (97)
                      ||||||+...+ ........+.. ++...  .+.+.      ..+.|.||+||+++++|++||+. +.|+|+.+++|+|+
T Consensus        64 ~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~~l~G~N~  142 (403)
T 4etp_A           64 YLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNV  142 (403)
T ss_dssp             EEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHH-HHHHHHHHHTTCCE
T ss_pred             EEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHH-HHHHHHHHhCCcce
Confidence            69999998773 22222222211 11111  12221      24789999999999999999987 56899999999999


Q ss_pred             EEEeeccCCCccceeecCCC
Q psy15017         71 TILAYGQTGSGKTYTMGTGT   90 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~~G~~   90 (97)
                      ||||||+|||||||||+|+.
T Consensus       143 tifAYGqTGSGKTyTM~g~~  162 (403)
T 4etp_A          143 AIFAYGQTGSGKTFTMLNPG  162 (403)
T ss_dssp             EEEEESCTTSSHHHHHHCTT
T ss_pred             EEEEECCCCCCCceEeCCCC
Confidence            99999999999999999863

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=99.89  E-value=6.2e-24  Score=162.35  Aligned_cols=88  Identities=31%  Similarity=0.598  Sum_probs=61.2

Q ss_pred             CEEec----CCCchhhhcCCceEEEEcCCC------CeEEeC-------CCeeeeccEEecCCCcHHHHHHHHHHHHHHH
Q psy15017          1 MCKIR----PQSAREVIDMCRVCTFVTPGE------PQVTLG-------ADKSFTFDYVFDMADVQTTIYELCAASLVAG   63 (97)
Q Consensus         1 ~vRvR----P~~~~e~~~~~~~~~~~~~~~------~~~~~~-------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~   63 (97)
                      |||||    |....|...+......-.+++      ..+.+.       .+++|+||+||+++++|++||+. +.|+|+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~  457 (715)
T 4h1g_A          379 FCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEE-LSQLIQC  457 (715)
T ss_dssp             EEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGG-THHHHHH
T ss_pred             EEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHH-HHHHHHH
Confidence            69999    555555544444433322222      223321       36899999999999999999986 5699999


Q ss_pred             HhCCCCEEEEeeccCCCccceeecCC
Q psy15017         64 SLEGYNATILAYGQTGSGKTYTMGTG   89 (97)
Q Consensus        64 ~~~g~n~~v~ayG~t~sGKt~T~~G~   89 (97)
                      +++|+|+||||||||||||||||.|.
T Consensus       458 ~~~G~n~~i~ayGqtgsGKT~Tm~g~  483 (715)
T 4h1g_A          458 SLDGTNVCVFAYGQTGSGKTFTMSHP  483 (715)
T ss_dssp             HHTTCCEEEEEESSTTSSHHHHHHCT
T ss_pred             HhCCceEEEEccCCCCCchhhccCCC
Confidence            99999999999999999999999885

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=2.6e-16  Score=109.14  Aligned_cols=50  Identities=14%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             CeeeeccEEecCCCcHH--HHHHHHHHHHHHHHhC-CCCEEEEeeccCCCccce
Q psy15017         34 DKSFTFDYVFDMADVQT--TIYELCAASLVAGSLE-GYNATILAYGQTGSGKTY   84 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~--~v~~~~~~p~v~~~~~-g~n~~v~ayG~t~sGKt~   84 (97)
                      .+.|.||+||++...|+  ++|++ +.++++.+++ |+|+|||||||||||||.
T Consensus        56 ~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT~  108 (298)
T 2o0a_A           56 EHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSLR  108 (298)
T ss_dssp             CCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHHH
T ss_pred             CceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCccH
Confidence            38999999999999999  99999 7889999998 999999999999999983

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.13  E-value=0.001  Score=42.00  Aligned_cols=51  Identities=16%  Similarity=0.012  Sum_probs=32.4

Q ss_pred             eeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         35 KSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        35 ~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..+||........|+.+++. +...++.+-......++-+|.+|+|||+.+
T Consensus         5 ~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~   55 (180)
T 3ec2_A            5 WNANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLA   55 (180)
T ss_dssp             TTCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred             hhCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence            445677655545567777755 344444433223345667999999999876

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.96  E-value=0.0084  Score=38.25  Aligned_cols=50  Identities=24%  Similarity=0.204  Sum_probs=29.7

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC-CEEEEeeccCCCccceee
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGY-NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~-n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|+........+..+++. +...+...-.+. +..++-+|.+|+|||+.+
T Consensus        21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la   71 (202)
T 2w58_A           21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL   71 (202)
T ss_dssp             CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred             cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence            45666554444456666664 233333332222 256778999999999875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.81  E-value=0.0095  Score=41.20  Aligned_cols=49  Identities=14%  Similarity=0.245  Sum_probs=28.8

Q ss_pred             eeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         37 FTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        37 F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+|+........+..++. .+...++..-.+....++-||.+|+||||.+
T Consensus       121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La  169 (308)
T 2qgz_A          121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLL  169 (308)
T ss_dssp             CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred             CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence            456554333334455555 2334444433333456778999999999976

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.00  E-value=0.037  Score=34.03  Aligned_cols=27  Identities=19%  Similarity=0.193  Sum_probs=20.0

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +++.+..+....++-+|..|+|||+.+
T Consensus        34 l~~~l~~~~~~~~ll~G~~G~GKT~l~   60 (195)
T 1jbk_A           34 TIQVLQRRTKNNPVLIGEPGVGKTAIV   60 (195)
T ss_dssp             HHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred             HHHHHhcCCCCceEEECCCCCCHHHHH
Confidence            444455565667788999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.61  E-value=0.038  Score=33.98  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=20.1

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +++.+..+....++-+|.+|+|||+.+
T Consensus        34 l~~~l~~~~~~~vll~G~~G~GKT~la   60 (187)
T 2p65_A           34 AIQILSRRTKNNPILLGDPGVGKTAIV   60 (187)
T ss_dssp             HHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred             HHHHHhCCCCCceEEECCCCCCHHHHH
Confidence            444455565667888999999999865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=93.22  E-value=0.039  Score=38.67  Aligned_cols=24  Identities=13%  Similarity=0.022  Sum_probs=20.0

Q ss_pred             HHhCCCCEEEEeeccCCCccceee
Q psy15017         63 GSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        63 ~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+..+...+++-||.+|+|||.++
T Consensus        39 ~i~~~~~~~lli~GpPGTGKT~~v   62 (318)
T 3te6_A           39 SLMSSQNKLFYITNADDSTKFQLV   62 (318)
T ss_dssp             HHHTTCCCEEEEECCCSHHHHHHH
T ss_pred             HhcCCCCCeEEEECCCCCCHHHHH
Confidence            344688889999999999999765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=92.63  E-value=0.056  Score=35.88  Aligned_cols=45  Identities=20%  Similarity=0.216  Sum_probs=20.2

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .++|+.+.+.+..-..+.+     .+..+... +..++-+|.+|+|||+..
T Consensus         2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~~~-~~~vll~G~~GtGKt~la   46 (265)
T 2bjv_A            2 AEYKDNLLGEANSFLEVLE-----QVSHLAPL-DKPVLIIGERGTGKELIA   46 (265)
T ss_dssp             --------CCCHHHHHHHH-----HHHHHTTS-CSCEEEECCTTSCHHHHH
T ss_pred             CcccccceeCCHHHHHHHH-----HHHHHhCC-CCCEEEECCCCCcHHHHH
Confidence            3567776654333233322     22333322 345667999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=92.14  E-value=0.086  Score=35.94  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             ccEEecCCCcHHHHHHHHHHHHHHHHhC--CC--CEEEEeeccCCCccceee
Q psy15017         39 FDYVFDMADVQTTIYELCAASLVAGSLE--GY--NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        39 fd~vf~~~~~q~~v~~~~~~p~v~~~~~--g~--n~~v~ayG~t~sGKt~T~   86 (97)
                      |+..++...-...+.+..+..++...+.  +.  ...++-||.+|+|||+..
T Consensus         2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la   53 (293)
T 3t15_A            2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC   53 (293)
T ss_dssp             CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred             cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence            4444444444555666666666665543  22  235677899999999754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=90.87  E-value=0.13  Score=37.26  Aligned_cols=27  Identities=33%  Similarity=0.409  Sum_probs=20.7

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+..++......+...|.+|||||.||
T Consensus       158 ~L~~l~~~~ggii~I~GpnGSGKTTlL  184 (418)
T 1p9r_A          158 NFRRLIKRPHGIILVTGPTGSGKSTTL  184 (418)
T ss_dssp             HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred             HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence            455556555667778899999999887

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=90.26  E-value=0.18  Score=32.21  Aligned_cols=19  Identities=26%  Similarity=0.342  Sum_probs=15.7

Q ss_pred             CCEEEEeeccCCCccceee
Q psy15017         68 YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~   86 (97)
                      ....++-||.+|+|||+.+
T Consensus        51 ~~~~~ll~G~~G~GKT~la   69 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLI   69 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHH
Confidence            4557788999999999865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=90.00  E-value=0.16  Score=31.80  Aligned_cols=21  Identities=33%  Similarity=0.385  Sum_probs=15.8

Q ss_pred             CCCCEEEEeeccCCCccceee
Q psy15017         66 EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+....++-+|..|+|||+.+
T Consensus        35 ~~~~~~~ll~G~~G~GKT~l~   55 (226)
T 2chg_A           35 RKNIPHLLFSGPPGTGKTATA   55 (226)
T ss_dssp             TTCCCCEEEECSTTSSHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHH
Confidence            343334888999999999865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=89.51  E-value=0.11  Score=32.03  Aligned_cols=16  Identities=31%  Similarity=0.677  Sum_probs=13.5

Q ss_pred             EEEeeccCCCccceee
Q psy15017         71 TILAYGQTGSGKTYTM   86 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~   86 (97)
                      .+.-+|.+|+|||+.+
T Consensus        38 ~~~l~G~~G~GKTtL~   53 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLL   53 (149)
T ss_dssp             EEEEESSSTTTTCHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4566999999999976

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=89.38  E-value=0.24  Score=34.11  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=23.9

Q ss_pred             CcHHHHHHHHHHHHHHHHhCC-CCE--EEEeeccCCCccceee
Q psy15017         47 DVQTTIYELCAASLVAGSLEG-YNA--TILAYGQTGSGKTYTM   86 (97)
Q Consensus        47 ~~q~~v~~~~~~p~v~~~~~g-~n~--~v~ayG~t~sGKt~T~   86 (97)
                      ..++...+.+.. .+...+.| ...  +++-+|.+|+|||..+
T Consensus        20 ~gr~~~~~~l~~-~l~~~~~~~~~~~~~~li~G~~G~GKTtl~   61 (389)
T 1fnn_A           20 PHREQQLQQLDI-LLGNWLRNPGHHYPRATLLGRPGTGKTVTL   61 (389)
T ss_dssp             TTCHHHHHHHHH-HHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred             CChHHHHHHHHH-HHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence            345555544333 33444433 334  6788999999999875

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=89.19  E-value=0.32  Score=30.64  Aligned_cols=24  Identities=33%  Similarity=0.504  Sum_probs=17.4

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+  ++..+.||||||.+
T Consensus        33 ~i~~~~~~~~--~lv~apTGsGKT~~   56 (206)
T 1vec_A           33 SIPIALSGRD--ILARAKNGTGKSGA   56 (206)
T ss_dssp             HHHHHHTTCC--EEEECCSSSTTHHH
T ss_pred             HHHHHccCCC--EEEECCCCCchHHH
Confidence            3455677876  44678999999954

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=89.19  E-value=0.26  Score=31.49  Aligned_cols=24  Identities=42%  Similarity=0.587  Sum_probs=18.4

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+  ++..+.||||||.+
T Consensus        44 ~i~~~~~~~~--~lv~~pTGsGKT~~   67 (224)
T 1qde_A           44 AIMPIIEGHD--VLAQAQSGTGKTGT   67 (224)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             HHHHHhcCCC--EEEECCCCCcHHHH
Confidence            4556678876  55679999999976

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=89.04  E-value=0.16  Score=35.96  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=19.2

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+..++.-....+...|.+|||||.+|
T Consensus       114 ~l~~l~~~~~g~i~I~GptGSGKTTlL  140 (356)
T 3jvv_A          114 VFKRVSDVPRGLVLVTGPTGSGKSTTL  140 (356)
T ss_dssp             HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred             HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence            344445444456777899999999887

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=88.84  E-value=0.28  Score=31.89  Aligned_cols=24  Identities=42%  Similarity=0.548  Sum_probs=18.5

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+  ++..+.||||||..
T Consensus        59 ~i~~~~~~~~--~l~~a~TGsGKT~~   82 (245)
T 3dkp_A           59 AIPVMLHGRE--LLASAPTGSGKTLA   82 (245)
T ss_dssp             HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCCcHHHH
Confidence            4556778877  46678999999975

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=88.62  E-value=0.062  Score=36.99  Aligned_cols=46  Identities=33%  Similarity=0.394  Sum_probs=26.4

Q ss_pred             cEEecCCCcHHHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         40 DYVFDMADVQTTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        40 d~vf~~~~~q~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ++..+.-..++...+.... .+..++ .+...+++-||.+|+|||..+
T Consensus        15 ~~~p~~~~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~   61 (387)
T 2v1u_A           15 DYVPDVLPHREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVA   61 (387)
T ss_dssp             TCCCSCCTTCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            3333333445555544322 222333 344557888999999999865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=88.59  E-value=0.19  Score=33.06  Aligned_cols=15  Identities=40%  Similarity=0.556  Sum_probs=13.4

Q ss_pred             EEeeccCCCccceee
Q psy15017         72 ILAYGQTGSGKTYTM   86 (97)
Q Consensus        72 v~ayG~t~sGKt~T~   86 (97)
                      ++-||.+|+|||+.+
T Consensus        52 ~ll~G~~G~GKTtl~   66 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLA   66 (254)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            788999999999875

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=88.56  E-value=0.31  Score=30.63  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=17.7

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+  ++..+.||||||.+
T Consensus        31 ~i~~~~~~~~--~li~~~TGsGKT~~   54 (207)
T 2gxq_A           31 ALPLALEGKD--LIGQARTGTGKTLA   54 (207)
T ss_dssp             HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHcCCCC--EEEECCCCChHHHH
Confidence            3456677876  44568999999976

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=88.49  E-value=0.41  Score=31.75  Aligned_cols=21  Identities=29%  Similarity=0.214  Sum_probs=17.2

Q ss_pred             CCCCEEEEeeccCCCccceee
Q psy15017         66 EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ......++-||.+|+|||+..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la   81 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALA   81 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHH
Confidence            455667888999999999864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=88.35  E-value=0.19  Score=33.50  Aligned_cols=53  Identities=21%  Similarity=0.258  Sum_probs=28.7

Q ss_pred             CeeeeccEEecCCCcHHHHHHHHHHHHHHH-Hh----CCCCEEEEeeccCCCccceee
Q psy15017         34 DKSFTFDYVFDMADVQTTIYELCAASLVAG-SL----EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~-~~----~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...+.|+.+.+.+...+.+.+.+..++... ++    -.....++-||.+|+|||+.+
T Consensus        11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la   68 (285)
T 3h4m_A           11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA   68 (285)
T ss_dssp             SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred             CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence            345667766654444444443333322111 11    123445778999999999765

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=88.25  E-value=0.2  Score=32.65  Aligned_cols=24  Identities=38%  Similarity=0.725  Sum_probs=18.4

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+  ++..+.||||||..
T Consensus        60 ai~~i~~~~~--~li~apTGsGKT~~   83 (237)
T 3bor_A           60 AIIPCIKGYD--VIAQAQSGTGKTAT   83 (237)
T ss_dssp             HHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCCcHHHH
Confidence            4556778877  45689999999965

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=87.85  E-value=0.28  Score=33.42  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=19.0

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..++.|..-.+++.+.||||||..
T Consensus       122 ai~~il~~~~~~~l~~a~TGsGKT~a  147 (300)
T 3fmo_B          122 ALPLMLAEPPQNLIAQSQSGTGKTAA  147 (300)
T ss_dssp             HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred             HHHHHHcCCCCeEEEECCCCCCccHH
Confidence            45677887333466789999999964

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=87.47  E-value=0.37  Score=34.50  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..++.|.+..++..+.||||||..
T Consensus       122 ai~~il~~~~~~~l~~a~TGsGKT~~  147 (479)
T 3fmp_B          122 ALPLMLAEPPQNLIAQSQSGTGKTAA  147 (479)
T ss_dssp             HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred             HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence            45667777556678899999999965

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=87.15  E-value=0.21  Score=34.01  Aligned_cols=18  Identities=39%  Similarity=0.658  Sum_probs=14.5

Q ss_pred             CEEEEeeccCCCccceee
Q psy15017         69 NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~   86 (97)
                      ...++-||.+|+|||+.+
T Consensus        49 ~~~vLL~Gp~GtGKT~la   66 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLA   66 (301)
T ss_dssp             CSEEEEECSSSSSHHHHH
T ss_pred             CceEEEECCCCcCHHHHH
Confidence            345778999999999764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=86.98  E-value=0.2  Score=33.06  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHH-----HHHhCCCCEEEEeeccCCCccceee
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLV-----AGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v-----~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+.|+.+.+.+...+.+.+. +..+-     ..+-......++-||.+|+|||+.+
T Consensus         7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la   61 (268)
T 2r62_A            7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA   61 (268)
T ss_dssp             CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred             CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence            45677776666555555432 22111     1111122234778999999999865

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=86.92  E-value=0.44  Score=30.78  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=17.8

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+.  +..+.||||||..
T Consensus        55 ~i~~~~~~~~~--li~a~TGsGKT~~   78 (236)
T 2pl3_A           55 TIGLALQGKDV--LGAAKTGSGKTLA   78 (236)
T ss_dssp             HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred             HHHHHhCCCCE--EEEeCCCCcHHHH
Confidence            44566788774  4568999999975

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=86.91  E-value=0.23  Score=33.08  Aligned_cols=24  Identities=46%  Similarity=0.618  Sum_probs=18.0

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ++..++.|.+  ++..+.||||||..
T Consensus        84 ~i~~~~~~~~--~lv~a~TGsGKT~~  107 (262)
T 3ly5_A           84 SIRPLLEGRD--LLAAAKTGSGKTLA  107 (262)
T ss_dssp             HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred             HHHHHhCCCc--EEEEccCCCCchHH
Confidence            4556677776  45679999999965

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19

Probab=86.89  E-value=0.44  Score=31.17  Aligned_cols=24  Identities=42%  Similarity=0.509  Sum_probs=17.4

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+.  +..+.||||||..
T Consensus        53 ~i~~i~~~~~~--l~~a~TGsGKT~~   76 (253)
T 1wrb_A           53 AIPAILEHRDI--MACAQTGSGKTAA   76 (253)
T ss_dssp             HHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred             HHHHHhCCCCE--EEECCCCChHHHH
Confidence            34456778774  4568999999964

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=86.88  E-value=0.44  Score=36.80  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         51 TIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        51 ~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+|.- +......++ ++.|.||+.-|.+|+|||.+
T Consensus        76 Hifai-A~~Ay~~m~~~~~nQsIiisGESGAGKTe~  110 (697)
T 1lkx_A           76 HMYAL-ANDAYRSMRQSQENQCVIISGESGAGKTEA  110 (697)
T ss_dssp             CHHHH-HHHHHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred             hHHHH-HHHHHHHHHhcCCCcEEEecCCCCCCchhh
Confidence            45532 223334443 68999999999999999965

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=86.87  E-value=0.26  Score=33.96  Aligned_cols=39  Identities=23%  Similarity=0.253  Sum_probs=24.8

Q ss_pred             CcHHHHHHHHHHHHHHHHhC-CCCEEEEeeccCCCccceee
Q psy15017         47 DVQTTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        47 ~~q~~v~~~~~~p~v~~~~~-g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+++..+.... .+..++. +...+++-||..|+|||..+
T Consensus        23 ~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la   62 (384)
T 2qby_B           23 PFREDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS   62 (384)
T ss_dssp             TTCHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred             CChHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            345555554333 3444443 44557889999999999865

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=86.76  E-value=0.31  Score=31.78  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=16.8

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      +++.+.+|.+  ++..|.||||||..
T Consensus        69 ~i~~i~~g~~--~~i~g~TGsGKTt~   92 (235)
T 3llm_A           69 ILEAISQNSV--VIIRGATGCGKTTQ   92 (235)
T ss_dssp             HHHHHHHCSE--EEEECCTTSSHHHH
T ss_pred             HHHHHhcCCE--EEEEeCCCCCcHHh
Confidence            4455556664  45689999999953

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=86.51  E-value=0.54  Score=28.34  Aligned_cols=16  Identities=19%  Similarity=0.256  Sum_probs=13.0

Q ss_pred             EEEeeccCCCccceee
Q psy15017         71 TILAYGQTGSGKTYTM   86 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~   86 (97)
                      .|+-+|.+|+|||+..
T Consensus        29 ~vll~G~~GtGKt~lA   44 (143)
T 3co5_A           29 PVFLTGEAGSPFETVA   44 (143)
T ss_dssp             CEEEEEETTCCHHHHH
T ss_pred             cEEEECCCCccHHHHH
Confidence            3666999999999764

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=86.49  E-value=0.48  Score=32.79  Aligned_cols=25  Identities=36%  Similarity=0.688  Sum_probs=19.5

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ..+..+++|.+  ++..+.||||||..
T Consensus        69 ~~i~~~~~~~~--~lv~a~TGsGKT~~   93 (414)
T 3eiq_A           69 RAILPCIKGYD--VIAQAQSGTGKTAT   93 (414)
T ss_dssp             HHHHHHHTTCC--EEECCCSCSSSHHH
T ss_pred             HHhHHHhCCCC--EEEECCCCCcccHH
Confidence            35567788887  45679999999975

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=86.38  E-value=0.49  Score=30.40  Aligned_cols=24  Identities=33%  Similarity=0.448  Sum_probs=18.0

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+.  +..+.||||||..
T Consensus        50 ~i~~~~~~~~~--l~~apTGsGKT~~   73 (228)
T 3iuy_A           50 AWPIILQGIDL--IVVAQTGTGKTLS   73 (228)
T ss_dssp             HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred             HHHHHhCCCCE--EEECCCCChHHHH
Confidence            45567788775  4568999999964

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=86.16  E-value=0.52  Score=30.05  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=17.5

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+  ++..+.||+|||..
T Consensus        44 ~i~~~~~~~~--~li~~~TGsGKT~~   67 (220)
T 1t6n_A           44 CIPQAILGMD--VLCQAKSGMGKTAV   67 (220)
T ss_dssp             HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCCchhhh
Confidence            4456677877  44567999999964

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=86.15  E-value=0.5  Score=36.95  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ....++ ++.|.||+.-|.+|+|||.+
T Consensus       130 Ay~~m~~~~~nQsIiiSGESGAGKTe~  156 (784)
T 2v26_A          130 AFRDMKVLKLSQSIIVSGESGAGKTEN  156 (784)
T ss_dssp             HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred             HHHHHHhcCCCcEEEEcCCCCCCceeh
Confidence            334444 58999999999999999965

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.00  E-value=0.38  Score=33.05  Aligned_cols=24  Identities=42%  Similarity=0.517  Sum_probs=16.8

Q ss_pred             HHhCCCCEEEEeeccCCCccceee
Q psy15017         63 GSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        63 ~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+-.|.-..++-||..|+|||+++
T Consensus        40 ~i~~g~~~~~ll~Gp~G~GKTtla   63 (340)
T 1sxj_C           40 FVDEGKLPHLLFYGPPGTGKTSTI   63 (340)
T ss_dssp             HHHTTCCCCEEEECSSSSSHHHHH
T ss_pred             HHhcCCCceEEEECCCCCCHHHHH
Confidence            344554323667999999999875

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=85.93  E-value=0.52  Score=36.81  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=20.8

Q ss_pred             HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ....++ ++.|.||+.-|.+|+|||.+
T Consensus       162 Ay~~m~~~~~nQsIiisGESGAGKTe~  188 (770)
T 1w9i_A          162 AYRSMLDDRQNQSLLITGESGAGKTEN  188 (770)
T ss_dssp             HHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred             HHHHHHhhcCCcEEEEecCCCCcchHH
Confidence            334444 58999999999999999965

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=85.52  E-value=0.71  Score=27.79  Aligned_cols=18  Identities=22%  Similarity=0.567  Sum_probs=13.9

Q ss_pred             CEEEEeeccCCCccceee
Q psy15017         69 NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~   86 (97)
                      +..|+-+|.+|+|||+..
T Consensus        24 ~~~vll~G~~GtGKt~lA   41 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGA   41 (145)
T ss_dssp             CSCEEEESSTTSSHHHHH
T ss_pred             CCCEEEECCCCCCHHHHH
Confidence            334677999999998754

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=85.37  E-value=0.58  Score=30.83  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=17.7

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+.  +..+.||||||..
T Consensus        73 ~i~~i~~~~~~--lv~a~TGsGKT~~   96 (249)
T 3ber_A           73 AIPLALQGRDI--IGLAETGSGKTGA   96 (249)
T ss_dssp             HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred             HHHHHhCCCCE--EEEcCCCCCchhH
Confidence            45567788774  4567999999975

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=85.35  E-value=0.71  Score=31.70  Aligned_cols=38  Identities=29%  Similarity=0.256  Sum_probs=23.5

Q ss_pred             cHHHHHHHHHHHHHHHHhCCCC--EEEEeeccCCCccceee
Q psy15017         48 VQTTIYELCAASLVAGSLEGYN--ATILAYGQTGSGKTYTM   86 (97)
Q Consensus        48 ~q~~v~~~~~~p~v~~~~~g~n--~~v~ayG~t~sGKt~T~   86 (97)
                      .|+..-.. +..+++.+..|..  -.++-||.+|+|||+..
T Consensus        48 G~~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la   87 (368)
T 3uk6_A           48 GQLAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA   87 (368)
T ss_dssp             SCHHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred             ChHHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence            44444432 2234445555554  36778999999999765

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=85.25  E-value=0.59  Score=36.62  Aligned_cols=25  Identities=28%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             HHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         61 VAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        61 v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ...++ ++.|.||+.-|.+|+|||.+
T Consensus       147 y~~m~~~~~nQsIiisGESGAGKTe~  172 (795)
T 1w7j_A          147 YKQMARDERNQSIIVSGESGAGKTVS  172 (795)
T ss_dssp             HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred             HHHhHhcCCCeEEEEeCCCCCCcchH
Confidence            33444 58999999999999999965

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=85.05  E-value=0.61  Score=36.50  Aligned_cols=27  Identities=33%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             HHHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         59 SLVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        59 p~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .....++ ++.|.||+.-|.+|+|||.+
T Consensus       160 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~  187 (783)
T 4db1_A          160 NAYQYMLTDRENQSILITGESGAGKTVN  187 (783)
T ss_dssp             HHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred             HHHHHHHhhCCCceEEEeCCCCCCCchH
Confidence            3344444 68999999999999999865

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=84.95  E-value=0.63  Score=30.03  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=17.6

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+.  +..+.||||||..
T Consensus        54 ~i~~~~~~~~~--l~~a~TGsGKT~~   77 (230)
T 2oxc_A           54 AIPLGRCGLDL--IVQAKSGTGKTCV   77 (230)
T ss_dssp             HHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred             HHHHHhCCCCE--EEECCCCCcHHHH
Confidence            34456778774  4568999999975

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=84.91  E-value=0.36  Score=32.51  Aligned_cols=19  Identities=47%  Similarity=0.583  Sum_probs=14.7

Q ss_pred             CCEEEEeeccCCCccceee
Q psy15017         68 YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~   86 (97)
                      ....+.-.|.+|||||.++
T Consensus        24 ~g~~v~i~Gp~GsGKSTll   42 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTI   42 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHH
T ss_pred             CCCEEEEECCCCccHHHHH
Confidence            3445666799999999876

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=84.82  E-value=0.56  Score=36.93  Aligned_cols=26  Identities=27%  Similarity=0.389  Sum_probs=20.7

Q ss_pred             HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ....++ ++.|.||+.-|.+|+|||.+
T Consensus       159 Ay~~m~~~~~nQsIiiSGESGAGKTe~  185 (837)
T 1kk8_A          159 AYQNMVTDRENQSCLITGESGAGKTEN  185 (837)
T ss_dssp             HHHHHHHHTSEEEEEEECSTTSSHHHH
T ss_pred             HHHHHHhcCCCcEEEEeCCCCCCchhh
Confidence            333444 58999999999999999865

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=84.67  E-value=0.67  Score=37.56  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ....++ ++.|.||+.-|.+|+|||.+
T Consensus       159 ay~~m~~~~~~Q~i~isGeSGaGKTe~  185 (1184)
T 1i84_S          159 AYRSMLQDREDQSILCTGESGAGKTEN  185 (1184)
T ss_dssp             HHHHHHHHTCCEEEECCCSTTSSTTHH
T ss_pred             HHHHHHhcCCCcEEEEecCCCCCccHH
Confidence            334444 68999999999999999965

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=84.65  E-value=0.62  Score=37.39  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=20.8

Q ss_pred             HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ....++ ++.|.||+.-|.+|+|||.+
T Consensus       162 Ay~~m~~~~~~QsIiisGESGAGKTe~  188 (1010)
T 1g8x_A          162 AYRSMLDDRQNQSLLITGESGAGKTEN  188 (1010)
T ss_dssp             HHHHHHHHTCCEEEEEEESTTSSHHHH
T ss_pred             HHHHHHhcCCCeEEEEeCCCCCCcchH
Confidence            334444 68999999999999999965

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=84.53  E-value=0.65  Score=37.50  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ....++ ++.|.||+.-|.+|||||.+
T Consensus       134 AY~~M~~~~~nQsIiiSGESGAGKTes  160 (1052)
T 4anj_A          134 AFRDMKVLKLSQSIIVSGESGAGKTEN  160 (1052)
T ss_dssp             HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCHHHH
Confidence            344444 68999999999999999865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=84.49  E-value=1.1  Score=29.92  Aligned_cols=19  Identities=26%  Similarity=0.305  Sum_probs=15.2

Q ss_pred             CCEEEEeeccCCCccceee
Q psy15017         68 YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~   86 (97)
                      ....++-||.+|+|||+..
T Consensus        66 ~~~~vll~G~~GtGKT~la   84 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVA   84 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH
Confidence            3446788999999999865

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=84.40  E-value=0.54  Score=32.44  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=19.0

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+..++..+.||||||..
T Consensus        55 ~i~~~~~~~~~~~lv~apTGsGKT~~   80 (412)
T 3fht_A           55 ALPLMLAEPPQNLIAQSQSGTGKTAA   80 (412)
T ss_dssp             HHHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred             HHHHHhcCCCCeEEEECCCCchHHHH
Confidence            45667777444566789999999975

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A

Probab=84.40  E-value=0.78  Score=33.46  Aligned_cols=26  Identities=27%  Similarity=0.493  Sum_probs=19.9

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.++.+.+-.++..+.||||||..
T Consensus       102 ~i~~~l~~~~~~~lv~apTGsGKTl~  127 (563)
T 3i5x_A          102 TIKPILSSEDHDVIARAKTGTGKTFA  127 (563)
T ss_dssp             HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred             HHHHHhcCCCCeEEEECCCCCCccHH
Confidence            55667765555677889999999974

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=84.32  E-value=0.66  Score=37.15  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             HHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ....++ ++.|.||+.-|.+|+|||.+
T Consensus       136 Ay~~m~~~~~~QsIiisGESGAGKTe~  162 (995)
T 2ycu_A          136 AYRSMLQDREDQSILCTGESGAGKTEN  162 (995)
T ss_dssp             HHHHHHHHCCCEEEEEECBTTSSHHHH
T ss_pred             HHHHHHhcCCCcEEEecCCCCCCchhh
Confidence            333444 68999999999999999865

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=84.12  E-value=0.16  Score=35.47  Aligned_cols=19  Identities=37%  Similarity=0.513  Sum_probs=15.2

Q ss_pred             CCEEEEeeccCCCccceee
Q psy15017         68 YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~   86 (97)
                      ....++-||.+|+|||+.+
T Consensus       116 ~~~~vLl~GppGtGKT~la  134 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIG  134 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH
Confidence            3456778999999999764

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=84.11  E-value=0.68  Score=32.15  Aligned_cols=24  Identities=33%  Similarity=0.578  Sum_probs=18.3

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+  ++..+.||||||..
T Consensus        67 ai~~i~~~~~--~lv~a~TGsGKT~~   90 (410)
T 2j0s_A           67 AIKQIIKGRD--VIAQSQSGTGKTAT   90 (410)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCCCchHH
Confidence            4566778887  45578999999964

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=84.06  E-value=0.14  Score=35.03  Aligned_cols=20  Identities=40%  Similarity=0.612  Sum_probs=15.9

Q ss_pred             CCCEEEEeeccCCCccceee
Q psy15017         67 GYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        67 g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +....++-||..|+|||..+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~   62 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVV   62 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHH
Confidence            34556788999999999865

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=84.04  E-value=0.22  Score=33.41  Aligned_cols=51  Identities=16%  Similarity=0.232  Sum_probs=27.5

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHHHH-HhC---CCCEEEEeeccCCCccceee
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLVAG-SLE---GYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~-~~~---g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...|+.+.+.+..-+.+.+.+..|.... ++.   .....++-||.+|+|||+.+
T Consensus        17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la   71 (297)
T 3b9p_A           17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA   71 (297)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred             CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence            3456665554433344443333333211 122   22446788999999999754

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=84.01  E-value=0.62  Score=30.33  Aligned_cols=24  Identities=38%  Similarity=0.458  Sum_probs=17.2

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+.  +..+.||||||..
T Consensus        59 ~i~~~~~g~~~--l~~apTGsGKT~~   82 (242)
T 3fe2_A           59 GWPVALSGLDM--VGVAQTGSGKTLS   82 (242)
T ss_dssp             HHHHHHHTCCE--EEEECTTSCHHHH
T ss_pred             HHHHHhCCCCE--EEECCCcCHHHHH
Confidence            34456678764  4567999999976

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=83.98  E-value=0.62  Score=34.38  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=17.4

Q ss_pred             HHHHhCCCCEEEEeeccCCCccceee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ++.+.+|...++++ +.||||||.++
T Consensus       191 ~~~~~~~~~~~ll~-~~TGsGKT~~~  215 (590)
T 3h1t_A          191 VQSVLQGKKRSLIT-MATGTGKTVVA  215 (590)
T ss_dssp             HHHHHTTCSEEEEE-ECTTSCHHHHH
T ss_pred             HHHHhcCCCceEEE-ecCCCChHHHH
Confidence            33444576655555 89999999885

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=83.77  E-value=0.72  Score=37.25  Aligned_cols=25  Identities=28%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             HHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         61 VAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        61 v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ...++ ++.|.||+.-|.+|+|||.+
T Consensus       147 y~~m~~~~~~QsIiisGESGAGKTe~  172 (1080)
T 2dfs_A          147 YKQMARDERNQSIIVSGESGAGKTVS  172 (1080)
T ss_dssp             HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred             HHHHHhcCCCcEEEEcCCCCCCccch
Confidence            33444 58999999999999999965

>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=83.71  E-value=5.4  Score=28.13  Aligned_cols=47  Identities=11%  Similarity=0.077  Sum_probs=35.3

Q ss_pred             eCCCeeeeccEEecCCC--cHHHHHHHHHHHHHHHHh-CCCCEEEEeeccC
Q psy15017         31 LGADKSFTFDYVFDMAD--VQTTIYELCAASLVAGSL-EGYNATILAYGQT   78 (97)
Q Consensus        31 ~~~~~~F~fd~vf~~~~--~q~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t   78 (97)
                      ....+.|.|+++++...  .+..++++ ....++--+ .+.|+++++-|..
T Consensus        88 ~~~~~~y~FnRiIp~~~~~e~~~l~qE-~q~y~DmcL~~~~NfslIsis~~  137 (333)
T 4etp_B           88 GLSEHVYKFNRVIPHLKVSEDCFFTQE-YSVYHDMALNQKKNFNLISLSTT  137 (333)
T ss_dssp             --CCCEEECSEEEETTTCCHHHHHHHT-THHHHHHHHHTTCCEEEEEEESS
T ss_pred             cCCcceEEEeeeechhhcchHHHHHHH-HHHHHHHHHccCCCeeEEEecCC
Confidence            45689999999998876  66666666 455566655 8999999998865

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=83.48  E-value=0.83  Score=32.93  Aligned_cols=39  Identities=26%  Similarity=0.231  Sum_probs=24.5

Q ss_pred             CcHHHHHHHHHHHHHHHHhCCCC--EEEEeeccCCCccceee
Q psy15017         47 DVQTTIYELCAASLVAGSLEGYN--ATILAYGQTGSGKTYTM   86 (97)
Q Consensus        47 ~~q~~v~~~~~~p~v~~~~~g~n--~~v~ayG~t~sGKt~T~   86 (97)
                      ..|+++-+.. ..+++.+..|..  ..++-||.+|+|||+..
T Consensus        40 iG~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la   80 (456)
T 2c9o_A           40 VGQENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA   80 (456)
T ss_dssp             ESCHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred             cCHHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence            3566665442 334555555542  35667999999999753

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=83.01  E-value=0.67  Score=31.67  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=18.3

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|....++..+.||||||..
T Consensus        35 ~i~~~~~~~~~~~lv~a~TGsGKT~~   60 (395)
T 3pey_A           35 ALPLLLHNPPRNMIAQSQSGTGKTAA   60 (395)
T ss_dssp             HHHHHHCSSCCCEEEECCTTSCHHHH
T ss_pred             HHHHHHcCCCCeEEEECCCCCcHHHH
Confidence            44566777333456679999999974

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=82.99  E-value=1.7  Score=29.42  Aligned_cols=29  Identities=31%  Similarity=0.363  Sum_probs=18.9

Q ss_pred             HHHHHHHHhCC-----CCEEEEeeccCCCcccee
Q psy15017         57 AASLVAGSLEG-----YNATILAYGQTGSGKTYT   85 (97)
Q Consensus        57 ~~p~v~~~~~g-----~n~~v~ayG~t~sGKt~T   85 (97)
                      ....+..++.+     ....++-.|.+|||||..
T Consensus        16 ~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTl   49 (287)
T 1gvn_B           16 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL   49 (287)
T ss_dssp             HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHH
T ss_pred             HHHHHHHHhccccCCCCCeEEEEECCCCCCHHHH
Confidence            33444455433     245677789999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=82.95  E-value=0.27  Score=33.51  Aligned_cols=48  Identities=21%  Similarity=0.372  Sum_probs=26.1

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .|+||.... ...+...+.. +..+++.-- .....++-||.+|+|||+.+
T Consensus         7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la   54 (324)
T 1l8q_A            7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLL   54 (324)
T ss_dssp             TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred             CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence            456765542 2234444443 222332211 12345777999999999876

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=82.94  E-value=0.61  Score=29.29  Aligned_cols=17  Identities=35%  Similarity=0.393  Sum_probs=14.2

Q ss_pred             EEEEeeccCCCccceee
Q psy15017         70 ATILAYGQTGSGKTYTM   86 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~   86 (97)
                      ..++-+|..|+|||..+
T Consensus        46 ~~~ll~G~~G~GKT~l~   62 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIA   62 (250)
T ss_dssp             SEEEEECSTTSCHHHHH
T ss_pred             eEEEEECCCCCCHHHHH
Confidence            36788999999999764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=82.73  E-value=0.73  Score=34.12  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=15.4

Q ss_pred             hCCCCEEEEeeccCCCccceee
Q psy15017         65 LEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        65 ~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      -.|.+  +...|.||||||.+|
T Consensus       258 ~~g~~--i~I~GptGSGKTTlL  277 (511)
T 2oap_1          258 EHKFS--AIVVGETASGKTTTL  277 (511)
T ss_dssp             HTTCC--EEEEESTTSSHHHHH
T ss_pred             hCCCE--EEEECCCCCCHHHHH
Confidence            35766  445799999999886

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=82.67  E-value=0.47  Score=30.34  Aligned_cols=23  Identities=39%  Similarity=0.647  Sum_probs=16.8

Q ss_pred             HHHHhCCCCEEEEeeccCCCcccee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ++.+++|.+.  +..+.||||||..
T Consensus        35 i~~~~~~~~~--lv~a~TGsGKT~~   57 (219)
T 1q0u_A           35 IPGALRGESM--VGQSQTGTGKTHA   57 (219)
T ss_dssp             HHHHHHTCCE--EEECCSSHHHHHH
T ss_pred             HHHHhCCCCE--EEECCCCChHHHH
Confidence            4456677764  4578999999975

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=82.60  E-value=0.47  Score=29.84  Aligned_cols=23  Identities=48%  Similarity=0.540  Sum_probs=16.5

Q ss_pred             HHHhCCCCEEEEeeccCCCccceee
Q psy15017         62 AGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        62 ~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +.+++|.+  ++..+.||+|||...
T Consensus        43 ~~~~~~~~--~li~~~tGsGKT~~~   65 (216)
T 3b6e_A           43 QPALEGKN--IIICLPTGSGKTRVA   65 (216)
T ss_dssp             HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred             HHHhcCCC--EEEEcCCCCCHHHHH
Confidence            34556666  445799999999764

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*

Probab=82.52  E-value=0.72  Score=32.25  Aligned_cols=23  Identities=26%  Similarity=0.318  Sum_probs=17.6

Q ss_pred             HHHHHhCCCCEEEEeeccCCCccce
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTY   84 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~   84 (97)
                      .++.+++|.+  ++..+.||||||.
T Consensus        29 ~i~~i~~~~~--~lv~apTGsGKT~   51 (414)
T 3oiy_A           29 WAKRIVQGKS--FTMVAPTGVGKTT   51 (414)
T ss_dssp             HHHHHTTTCC--EECCSCSSSSHHH
T ss_pred             HHHHHhcCCC--EEEEeCCCCCHHH
Confidence            4456678876  4578999999997

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=82.03  E-value=0.7  Score=30.92  Aligned_cols=36  Identities=25%  Similarity=0.132  Sum_probs=22.0

Q ss_pred             CcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         47 DVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        47 ~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..|+++.+..    ...+-.|....++-||..|+|||+..
T Consensus        28 ~g~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKT~la   63 (327)
T 1iqp_A           28 VGQEHIVKRL----KHYVKTGSMPHLLFAGPPGVGKTTAA   63 (327)
T ss_dssp             CSCHHHHHHH----HHHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred             hCCHHHHHHH----HHHHHcCCCCeEEEECcCCCCHHHHH
Confidence            3455555442    22233344334788999999999764

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=81.82  E-value=1.1  Score=30.66  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             HHHHHhCCC---CEEEEeeccCCCccceee
Q psy15017         60 LVAGSLEGY---NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~g~---n~~v~ayG~t~sGKt~T~   86 (97)
                      .+...++|.   ..||+-||..|+|||+..
T Consensus        92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a  121 (267)
T 1u0j_A           92 VFLGWATKKFGKRNTIWLFGPATTGKTNIA  121 (267)
T ss_dssp             HHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred             HHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence            456677765   457889999999998753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=81.63  E-value=0.46  Score=32.33  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=17.2

Q ss_pred             HHHhCCCCEEEEeeccCCCccceee
Q psy15017         62 AGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        62 ~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+..|....++-||..|+|||+.+
T Consensus        51 ~~l~~~~~~~~ll~G~~G~GKT~la   75 (353)
T 1sxj_D           51 KTLKSANLPHMLFYGPPGTGKTSTI   75 (353)
T ss_dssp             HHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred             HHHhcCCCCEEEEECCCCCCHHHHH
Confidence            3344553333778999999999764

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=81.53  E-value=0.96  Score=32.17  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=18.1

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..+++|.+  +++.++||||||..
T Consensus        86 ai~~i~~g~d--~i~~a~TGsGKT~a  109 (434)
T 2db3_A           86 SIPVISSGRD--LMACAQTGSGKTAA  109 (434)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             HHHHHhcCCC--EEEECCCCCCchHH
Confidence            4556778877  45678999999974

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=81.37  E-value=0.44  Score=32.83  Aligned_cols=49  Identities=20%  Similarity=0.335  Sum_probs=26.7

Q ss_pred             eccEEecCCCcHHHHHHHHHHHHHH-HHhCCC---CEEEEeeccCCCccceee
Q psy15017         38 TFDYVFDMADVQTTIYELCAASLVA-GSLEGY---NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        38 ~fd~vf~~~~~q~~v~~~~~~p~v~-~~~~g~---n~~v~ayG~t~sGKt~T~   86 (97)
                      +|+.+.+.+..-+.+-+.+..|+-. .++.|.   ...++-||..|+|||+..
T Consensus        10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la   62 (322)
T 1xwi_A           10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA   62 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence            4555544443334444444444332 233331   235777999999999865

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=81.13  E-value=0.61  Score=35.12  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=16.6

Q ss_pred             HHHHhCCCCEEEEeeccCCCccceee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      |..++....-+ +-.|..|||||+|+
T Consensus       198 V~~al~~~~~~-lI~GPPGTGKT~ti  222 (646)
T 4b3f_X          198 VLFALSQKELA-IIHGPPGTGKTTTV  222 (646)
T ss_dssp             HHHHHHCSSEE-EEECCTTSCHHHHH
T ss_pred             HHHHhcCCCce-EEECCCCCCHHHHH
Confidence            34444333333 45699999999997

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=80.97  E-value=0.75  Score=32.52  Aligned_cols=26  Identities=38%  Similarity=0.391  Sum_probs=17.9

Q ss_pred             HHHHhCCCCEEEEeeccCCCccceee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..+.-.....+.-.|.+|||||.+|
T Consensus       128 l~~l~~~~g~~i~ivG~~GsGKTTll  153 (372)
T 2ewv_A          128 VLELCHRKMGLILVTGPTGSGKSTTI  153 (372)
T ss_dssp             HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred             HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence            34443334456667899999999876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=80.88  E-value=0.7  Score=29.65  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             HHHHHHhCC---CCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEG---YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g---~n~~v~ayG~t~sGKt~T~   86 (97)
                      +-++.++.|   ....+.-+|.+|+|||..+
T Consensus        11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~   41 (243)
T 1n0w_A           11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC   41 (243)
T ss_dssp             HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred             hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence            456777753   2445667899999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=80.84  E-value=0.35  Score=32.31  Aligned_cols=15  Identities=40%  Similarity=0.556  Sum_probs=13.4

Q ss_pred             EEeeccCCCccceee
Q psy15017         72 ILAYGQTGSGKTYTM   86 (97)
Q Consensus        72 v~ayG~t~sGKt~T~   86 (97)
                      ++-||.+|+|||+.+
T Consensus        76 vll~Gp~GtGKTtl~   90 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLA   90 (278)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCcChHHHHH
Confidence            778999999999875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=80.83  E-value=0.51  Score=30.75  Aligned_cols=18  Identities=33%  Similarity=0.429  Sum_probs=14.8

Q ss_pred             CEEEEeeccCCCccceee
Q psy15017         69 NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~   86 (97)
                      ...++-||.+|+|||+..
T Consensus        39 ~~~vll~G~~GtGKT~la   56 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLA   56 (262)
T ss_dssp             CCEEEEESCTTSSHHHHH
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            446788999999999865

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=80.80  E-value=0.83  Score=31.53  Aligned_cols=24  Identities=33%  Similarity=0.551  Sum_probs=17.3

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+  ++..+.||||||..
T Consensus        51 ~i~~i~~~~~--~li~a~TGsGKT~~   74 (400)
T 1s2m_A           51 AIPVAITGRD--ILARAKNGTGKTAA   74 (400)
T ss_dssp             HHHHHHHTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHhcCCC--EEEECCCCcHHHHH
Confidence            3455667776  45678999999964

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=80.75  E-value=1.1  Score=34.17  Aligned_cols=40  Identities=30%  Similarity=0.246  Sum_probs=28.1

Q ss_pred             ecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         43 FDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        43 f~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      |.+..+|..-++.    +++.+-.|.... .-.|.+|||||++|-
T Consensus         7 ~~~~~~q~~ai~~----l~~~~~~~~~~~-~l~g~tgs~kt~~~a   46 (664)
T 1c4o_A            7 PSPKGDQPKAIAG----LVEALRDGERFV-TLLGATGTGKTVTMA   46 (664)
T ss_dssp             CCCCTTHHHHHHH----HHHHHHTTCSEE-EEEECTTSCHHHHHH
T ss_pred             CCCCCCChHHHHH----HHHHHhcCCCcE-EEEcCCCcHHHHHHH
Confidence            3677788877766    455566665433 346999999999984

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=80.54  E-value=1.1  Score=32.18  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=24.6

Q ss_pred             CCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         46 ADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        46 ~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +..|.+....+.    ..+.++.. .++..|..|||||+++
T Consensus        27 n~~Q~~av~~~~----~~i~~~~~-~~li~G~aGTGKT~ll   62 (459)
T 3upu_A           27 TEGQKNAFNIVM----KAIKEKKH-HVTINGPAGTGATTLT   62 (459)
T ss_dssp             CHHHHHHHHHHH----HHHHSSSC-EEEEECCTTSCHHHHH
T ss_pred             CHHHHHHHHHHH----HHHhcCCC-EEEEEeCCCCCHHHHH
Confidence            457877776643    33444443 6778899999999875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=80.24  E-value=1.1  Score=29.62  Aligned_cols=36  Identities=31%  Similarity=0.301  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHhCC-CCEEEEeeccCCCcccee
Q psy15017         50 TTIYELCAASLVAGSLEG-YNATILAYGQTGSGKTYT   85 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~~g-~n~~v~ayG~t~sGKt~T   85 (97)
                      +.+++.+...++...... ....++-.|.+|||||..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl   48 (253)
T 2p5t_B           12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI   48 (253)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred             HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence            444555444333332222 235677789999999864

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=80.13  E-value=0.95  Score=29.71  Aligned_cols=23  Identities=30%  Similarity=0.065  Sum_probs=16.2

Q ss_pred             HHHhCCCCEEEEeeccCCCccceee
Q psy15017         62 AGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        62 ~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +.++++.+  ++..|.+|+|||+..
T Consensus       103 ~~~~~~~~--~ll~~~tG~GKT~~a  125 (237)
T 2fz4_A          103 ERWLVDKR--GCIVLPTGSGKTHVA  125 (237)
T ss_dssp             HHHTTTSE--EEEEESSSTTHHHHH
T ss_pred             HHHHhCCC--EEEEeCCCCCHHHHH
Confidence            34556655  455689999999864

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=80.08  E-value=1  Score=30.62  Aligned_cols=45  Identities=20%  Similarity=0.388  Sum_probs=26.1

Q ss_pred             CeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         34 DKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        34 ~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ...+.|+.+.+    ++.+...    +...++......++-||.+|+|||+..
T Consensus        18 ~~~~~f~~i~G----~~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la   62 (350)
T 1g8p_A           18 RPVFPFSAIVG----QEDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV   62 (350)
T ss_dssp             CCCCCGGGSCS----CHHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred             CCCCCchhccC----hHHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence            45567776654    3333332    122233333334778999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	97
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	1e-18
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	2e-17
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	3e-17
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	1e-16
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	3e-16
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	6e-16
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	7e-16
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	1e-13
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	9e-11

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score = 76.1 bits (186), Expect = 1e-18
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 1  MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--ADKSFTFDYVFDMADVQTTIYELCAA 58
          + + RPQ+  E+    +        +        A  SFTFD VFDM+  Q+ I++    
Sbjct: 10 VARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIK 69

Query: 59 SLVAGSLEGYNATILAYGQTGSGKTYTM 86
            V   L GYN T+ AYGQTG+GK+YTM
Sbjct: 70 PTVDDILNGYNGTVFAYGQTGAGKSYTM 97

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 2e-17
 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 1  MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASL 60
          MC+ RP +  EV    +       GE  V + + K + FD VF  +  Q  +Y  CA  +
Sbjct: 10 MCRFRPLNESEVNRGDKYIAKF-QGEDTVVIAS-KPYAFDRVFQSSTSQEQVYNDCAKKI 67

Query: 61 VAGSLEGYNATILAYGQTGSGKTYTM 86
          V   LEGYN TI AYGQT SGKT+TM
Sbjct: 68 VKDVLEGYNGTIFAYGQTSSGKTHTM 93

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 3e-17
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 1  MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL--------GADKSFTFDYVFDMADVQTTI 52
          + + RP +  E            P   +V++         + K++TFD VF  +  Q  +
Sbjct: 5  VVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDV 64

Query: 53 YELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
          Y      ++   + GYN TI AYGQTG+GKT+TM
Sbjct: 65 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 98

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 70.8 bits (172), Expect = 1e-16
 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 1   MCKIRPQSAREVIDMCRVC------TFVTPGEPQVTL-----GADKSFTFDYVFDMADVQ 49
           + + RP S  E                +   EP+  +          F  D VFD     
Sbjct: 5   VVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDN 64

Query: 50  TTIYELCAASLVAGSLE-GYNATILAYGQTGSGKTYTM 86
            T+YE     L+    E G   +  AYGQTGSGKTYTM
Sbjct: 65  FTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 69.6 bits (169), Expect = 3e-16
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 1  MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGAD---KSFTFDYVFDMADVQTTIYELCA 57
           C++RP   +E+I   R             L  D   K   +D VFD    Q  ++E   
Sbjct: 5  YCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE-DT 63

Query: 58 ASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            LV  +++GYN  I AYGQTGSGKT+T+
Sbjct: 64 KYLVQSAVDGYNVCIFAYGQTGSGKTFTI 92

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.2 bits (168), Expect = 6e-16
 Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 13/96 (13%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------GADKSFTFDYVFDMADVQT 50
            C+IRP    E   MC  CT+    E  V L             + F+FD VF     Q+
Sbjct: 50  FCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQS 107

Query: 51  TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            I+E   + L+  +L+GYN  I AYGQTGSGKTYTM
Sbjct: 108 DIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTM 142

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score = 68.8 bits (167), Expect = 7e-16
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 2   CKIRPQSAREVIDMCRVC--------TFVTPGEPQVTL---GADKSFTFDYVFDMADVQT 50
            + RP + +E+                 V   + +V L     +++F FD+ FD      
Sbjct: 36  VRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNE 95

Query: 51  TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            +Y   A  LV    EG  AT  AYGQTGSGKT+TM
Sbjct: 96  VVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 131

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score = 62.7 bits (151), Expect = 1e-13
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGE-----PQVTLGADKSFTFDYVFDMADV------- 48
             ++RP ++RE+    +    ++        P+      KSF+FDY +            
Sbjct: 6   AVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYA 65

Query: 49  -QTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM 86
            Q  +Y      ++  + EGYN  I AYGQTG+GK+YTM
Sbjct: 66  SQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 104

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score = 54.2 bits (129), Expect = 9e-11
 Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 1   MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL----------GADKSFTFDYVFDMADVQT 50
            C+IRP           +       +                    F FD +FD  D   
Sbjct: 6   YCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNV 65

Query: 51  TIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTMGTGTFSPISRI 97
            +++     LV  SL+GYN  I AYGQTGSGKT+TM       I   
Sbjct: 66  DVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPST 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	99.96
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	99.96
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	99.96
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	99.95
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	99.95
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	99.95
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	99.94
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	99.93
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.43
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.06
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.74
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	92.17
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.05
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	92.03
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.03
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	91.89
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.82
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	91.71
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	91.46
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	91.32
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	91.2
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.13
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.05
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	90.48
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	90.26
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.2
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	90.15
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.03
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	89.92
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	89.87
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	89.14
d1okkd2	207	GTPase domain of the signal recognition particle r	89.1
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	88.75
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	88.69
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	88.12
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	87.69
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	87.43
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	87.39
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	87.27
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	87.08
d2qy9a2	211	GTPase domain of the signal recognition particle r	86.87
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.71
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	86.43
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	86.41
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	86.11
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	85.72
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	85.57
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	85.14
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	84.96
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	84.57
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	84.21
d1j8yf2	211	GTPase domain of the signal sequence recognition p	83.5
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	83.44
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	82.82
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	82.44
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	81.63
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	81.36
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	81.33
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	80.86
d1ls1a2	207	GTPase domain of the signal sequence recognition p	80.59
d1vmaa2	213	GTPase domain of the signal recognition particle r	80.4

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=99.96  E-value=6e-30  Score=180.16  Aligned_cols=92  Identities=32%  Similarity=0.515  Sum_probs=82.9

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC--------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG--------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATI   72 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v   72 (97)
                      +|||||++..|...+...++.+++....+.+.        ..+.|+||+|||++++|++||+.++.|+|+.+++|+|+||
T Consensus         5 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~lv~~~l~G~n~~i   84 (345)
T d1x88a1           5 VVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTI   84 (345)
T ss_dssp             EEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEECCCChhhhccCCCeEEEEcCCCceEEEecCCCCCCCCcceEecCEEeCCCCCHHHHHHHHHHHhHHHHhccCCceE
Confidence            59999999999888888888887777766552        2478999999999999999999999999999999999999


Q ss_pred             EeeccCCCccceeecCCCCC
Q psy15017         73 LAYGQTGSGKTYTMGTGTFS   92 (97)
Q Consensus        73 ~ayG~t~sGKt~T~~G~~~~   92 (97)
                      ||||+|||||||||+|+...
T Consensus        85 ~aYGqtgSGKTyTm~G~~~~  104 (345)
T d1x88a1          85 FAYGQTGTGKTFTMEGERSP  104 (345)
T ss_dssp             EEEECTTSSHHHHHTBCCCG
T ss_pred             EeeeeccccceEEeeecCCc
Confidence            99999999999999998765

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.3e-30  Score=178.12  Aligned_cols=93  Identities=41%  Similarity=0.618  Sum_probs=81.2

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeCCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLGADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGS   80 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~s   80 (97)
                      +|||||++..|...++..++.+.+ +..+.. ..+.|+||+||+++++|+++|+.++.|+|+.+++|+|+||||||+|||
T Consensus        10 ~vRvRP~~~~e~~~~~~~~~~~~~-~~~~~~-~~~~f~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgS   87 (323)
T d1bg2a_          10 MCRFRPLNESEVNRGDKYIAKFQG-EDTVVI-ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSS   87 (323)
T ss_dssp             EEEECCCCHHHHHHTCCBCCEEET-TTEEEE-TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTS
T ss_pred             EEEeCCCChHHhccCCceEEEECC-CCeEEE-CCceeECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCC
Confidence            599999999998777666666554 343433 678999999999999999999999999999999999999999999999


Q ss_pred             ccceeecCCCCCCCC
Q psy15017         81 GKTYTMGTGTFSPIS   95 (97)
Q Consensus        81 GKt~T~~G~~~~~~~   95 (97)
                      ||||||+|+..++..
T Consensus        88 GKTyT~~G~~~~~~~  102 (323)
T d1bg2a_          88 GKTHTMEGKLHDPEG  102 (323)
T ss_dssp             SHHHHHTBSTTCTTT
T ss_pred             CCceeccCCcccccc
Confidence            999999999888754

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=99.96  E-value=4.6e-30  Score=182.06  Aligned_cols=90  Identities=33%  Similarity=0.471  Sum_probs=76.9

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGY   68 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~   68 (97)
                      +|||||++.+|...+...++.+.+ +..+.+.            ..+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus        35 ~vRvRPl~~~E~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~  113 (362)
T d1v8ka_          35 CVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG  113 (362)
T ss_dssp             EEEECCCCHHHHHTTCCBCEECCS-SSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTC
T ss_pred             EEEeCCCChHHhhCCCceEEEECC-CcEEEEeCCccccccccCcCceeEeCCeecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            589999999998877777776643 3333321            247899999999999999999999999999999999


Q ss_pred             CEEEEeeccCCCccceeecCCCC
Q psy15017         69 NATILAYGQTGSGKTYTMGTGTF   91 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~~G~~~   91 (97)
                      |+||||||+|||||||||+|+..
T Consensus       114 n~tifaYGqTGSGKTyTm~G~~~  136 (362)
T d1v8ka_         114 KATCFAYGQTGSGKTHTMGGDLS  136 (362)
T ss_dssp             EEEEEEEESTTSSHHHHHHCBC-
T ss_pred             CceEEeeccCCCCCceeeeecCC
Confidence            99999999999999999999754

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=99.96  E-value=3.5e-29  Score=176.82  Aligned_cols=91  Identities=37%  Similarity=0.584  Sum_probs=78.4

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC---CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeecc
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG---ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQ   77 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~   77 (97)
                      +|||||++..|...+...++.+...+ .+.+.   ..++|+||+|||++++|++||+.++.|+|+.+++|+|+||||||+
T Consensus        10 ~vRvRP~~~~E~~~~~~~~v~~~~~~-~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYG~   88 (354)
T d1goja_          10 VARFRPQNRVEIESGGQPIVTFQGPD-TCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQ   88 (354)
T ss_dssp             EEEECCCCHHHHTTTCCBCEEECSTT-EEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECS
T ss_pred             EEEcCCCChHHHhcCCceEEEEECCC-eEEEcCCCCcceEECCeEcCCCCCHHHHHHHHHHHHHHHhhccCceeEEeccc
Confidence            59999999999877777777665433 34432   357899999999999999999999999999999999999999999


Q ss_pred             CCCccceeecCCCCC
Q psy15017         78 TGSGKTYTMGTGTFS   92 (97)
Q Consensus        78 t~sGKt~T~~G~~~~   92 (97)
                      |||||||||+|+...
T Consensus        89 tgSGKT~Tm~G~~~~  103 (354)
T d1goja_          89 TGAGKSYTMMGTSID  103 (354)
T ss_dssp             TTSSHHHHHTBSCTT
T ss_pred             CCCCcceeeeccccc
Confidence            999999999997644

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.95  E-value=2.1e-29  Score=178.72  Aligned_cols=94  Identities=34%  Similarity=0.497  Sum_probs=80.2

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC---CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeecc
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG---ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQ   77 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~   77 (97)
                      +|||||++.+|.......++.+.++.......   ..+.|.||+|||++++|++||+. +.|+|+.+++|+|+||||||+
T Consensus         5 ~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~-v~~lv~~~l~G~n~~i~aYGq   83 (364)
T d1sdma_           5 YCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQ   83 (364)
T ss_dssp             EEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEECS
T ss_pred             EEEcCCCChhhcccCCCCeEEeCCCCeEEecCCCCCceEEECCeecCCCCCHHHHHHH-HHHHHHHHhcCCceeeecccc
Confidence            59999999999877777776665544433322   46899999999999999999987 589999999999999999999


Q ss_pred             CCCccceeecCCCCCCCC
Q psy15017         78 TGSGKTYTMGTGTFSPIS   95 (97)
Q Consensus        78 t~sGKt~T~~G~~~~~~~   95 (97)
                      |||||||||+|+.++|+.
T Consensus        84 TGSGKTyTm~G~~~~~Gi  101 (364)
T d1sdma_          84 TGSGKTFTIYGADSNPGL  101 (364)
T ss_dssp             TTSSHHHHHTBCSSSBCH
T ss_pred             CCCCcccccccCccccch
Confidence            999999999999988763

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=99.95  E-value=1.7e-29  Score=178.20  Aligned_cols=91  Identities=31%  Similarity=0.511  Sum_probs=76.8

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEe-----CCCeeeeccEEecCC--------CcHHHHHHHHHHHHHHHHhCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTL-----GADKSFTFDYVFDMA--------DVQTTIYELCAASLVAGSLEG   67 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~F~fd~vf~~~--------~~q~~v~~~~~~p~v~~~~~g   67 (97)
                      +|||||+..+|...+...++.+.+....+..     ...+.|.||+|||++        ++|++||+.++.|+|+.+++|
T Consensus         6 ~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~plv~~~l~G   85 (349)
T d2zfia1           6 AVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEG   85 (349)
T ss_dssp             EEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTT
T ss_pred             EEEeCCCChhHhcCCCcEEEEECCCcEEEECCCCCCcCCeeEEeceEeCCCCCccccccccHHHHHHHhhHHHHHHHHhc
Confidence            5899999999988777777766543332211     135799999999997        479999999999999999999


Q ss_pred             CCEEEEeeccCCCccceeecCCCC
Q psy15017         68 YNATILAYGQTGSGKTYTMGTGTF   91 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~~G~~~   91 (97)
                      +|+||||||+|||||||||+|+.+
T Consensus        86 ~n~ti~aYGqTgSGKT~Tm~G~~~  109 (349)
T d2zfia1          86 YNVCIFAYGQTGAGKSYTMMGKQE  109 (349)
T ss_dssp             CCEEEEEECSTTSSHHHHHTBCSG
T ss_pred             cCceeeeeccCCCCCceeeccCcc
Confidence            999999999999999999999865

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.95  E-value=1.7e-28  Score=171.97  Aligned_cols=89  Identities=31%  Similarity=0.365  Sum_probs=75.5

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC------------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHh-CC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG------------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSL-EG   67 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~-~g   67 (97)
                      +|||||+...|.......++.+.. +..+.+.            ..+.|.||+||+++++|+++|+.++.|+|.+++ +|
T Consensus         5 ~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~v~~~~~~~~~~~~~~~~~F~fD~Vf~~~~~q~~vy~~~~~plv~~~~~~G   83 (330)
T d1ry6a_           5 VVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENG   83 (330)
T ss_dssp             EEEECCCCHHHHHTTCCBCEEEEE-TTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHC
T ss_pred             EEEeCCCChHHHhcCCceEEEECC-CcEEEEcCCccccccccCcCcceEeCCeecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            599999999998877777766643 3333321            247899999999999999999999999999988 59


Q ss_pred             CCEEEEeeccCCCccceeecCCC
Q psy15017         68 YNATILAYGQTGSGKTYTMGTGT   90 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~~G~~   90 (97)
                      +|+||||||+|||||||||+|+.
T Consensus        84 ~n~~i~aYGqTGSGKTyTm~G~~  106 (330)
T d1ry6a_          84 CVCSCFAYGQTGSGKTYTMLGSQ  106 (330)
T ss_dssp             CEEEEEEECCTTSSHHHHHHBSS
T ss_pred             CCeEEEeeeccccccceeeeccc
Confidence            99999999999999999999975

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=3.1e-28  Score=172.86  Aligned_cols=91  Identities=43%  Similarity=0.692  Sum_probs=74.1

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCeEEeC----------CCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCE
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQVTLG----------ADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNA   70 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~----------~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~   70 (97)
                      +|||||++..|.......++.  .++..+.+.          ..+.|.||+|||++++|++||+. +.|+|+.+++|+|+
T Consensus        50 ~vRvRP~~~~E~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~-v~plv~~vl~G~n~  126 (368)
T d2ncda_          50 FCRIRPPLESEENRMCCTWTY--HDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNI  126 (368)
T ss_dssp             EEEECCCCGGGTTSCBCEEEE--ETTTEEEEECSCHHHHTTTCCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCEE
T ss_pred             EEEeCCCCchhcCCCCcEEEe--CCCCeEEEccCCccccCCcCceeeECCeEECCCCCccchHHH-HHHHHHHHhcccce
Confidence            599999999996554444333  333334331          25789999999999999999965 67999999999999


Q ss_pred             EEEeeccCCCccceeecCCCCCCC
Q psy15017         71 TILAYGQTGSGKTYTMGTGTFSPI   94 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~~G~~~~~~   94 (97)
                      ||||||+|||||||||+|+..+++
T Consensus       127 ti~aYGqtGSGKT~Tm~G~~~~~G  150 (368)
T d2ncda_         127 CIFAYGQTGSGKTYTMDGVPESVG  150 (368)
T ss_dssp             EEEEECSTTSSHHHHHTEETTEEC
T ss_pred             eEEeeccCCCccceEecccccccc
Confidence            999999999999999999887765

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=99.93  E-value=8.7e-27  Score=163.81  Aligned_cols=88  Identities=36%  Similarity=0.555  Sum_probs=69.4

Q ss_pred             CEEecCCCchhhhcCCceEEEEcCCCCe--E---E---e---CCCeeeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCC
Q psy15017          1 MCKIRPQSAREVIDMCRVCTFVTPGEPQ--V---T---L---GADKSFTFDYVFDMADVQTTIYELCAASLVAGSLEGYN   69 (97)
Q Consensus         1 ~vRvRP~~~~e~~~~~~~~~~~~~~~~~--~---~---~---~~~~~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n   69 (97)
                      +|||||+...|.. ....++.+...+..  +   .   .   ...+.|+||+||+++++|+++|+. +.|+|+.+++|+|
T Consensus         6 ~vRvRP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~-v~~~v~~~l~G~n   83 (342)
T d1f9va_           6 YCRIRPALKNLEN-SDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYN   83 (342)
T ss_dssp             EEEECCCCTTTCC-CTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHH-HHHHHGGGGGTCC
T ss_pred             EEEeCcCCccccc-CCCceEEeeccCCcceeeeccccccCCCCCceEeecCeEeCCCCCHHHHHHH-hhhhhcchhcccc
Confidence            5999999877653 33455555433221  1   0   0   135889999999999999999987 5699999999999


Q ss_pred             EEEEeeccCCCccceeecCCC
Q psy15017         70 ATILAYGQTGSGKTYTMGTGT   90 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~~G~~   90 (97)
                      +||||||+|||||||||+|+.
T Consensus        84 ~~i~aYGqtgSGKT~T~~G~~  104 (342)
T d1f9va_          84 VCIFAYGQTGSGKTFTMLNPG  104 (342)
T ss_dssp             EEEEEECCTTSSHHHHHHSTT
T ss_pred             cceeeeeccCCccccccccCc
Confidence            999999999999999999953

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.43  E-value=0.0033  Score=39.89  Aligned_cols=48  Identities=25%  Similarity=0.432  Sum_probs=29.4

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .|+||.-+- ..+++..|..+ ..+++.--..+| .++-||.+|+||||-+
T Consensus         6 ~~tFdnF~v-g~~N~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKTHLl   53 (213)
T d1l8qa2           6 KYTLENFIV-GEGNRLAYEVV-KEALENLGSLYN-PIFIYGSVGTGKTHLL   53 (213)
T ss_dssp             TCCSSSCCC-CTTTHHHHHHH-HHHHHTTTTSCS-SEEEECSSSSSHHHHH
T ss_pred             CCChhhccC-CCcHHHHHHHH-HHHHhCcCCCCC-cEEEECCCCCcHHHHH
Confidence            467765443 33566666543 333433333444 3788999999999976

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.06  E-value=0.0034  Score=39.83  Aligned_cols=34  Identities=26%  Similarity=0.207  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHhCCCCE-----EEEeeccCCCccceee
Q psy15017         53 YELCAASLVAGSLEGYNA-----TILAYGQTGSGKTYTM   86 (97)
Q Consensus        53 ~~~~~~p~v~~~~~g~n~-----~v~ayG~t~sGKt~T~   86 (97)
                      ++.+..-+...+++|...     .++.||..|+|||.++
T Consensus        25 ~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~   63 (287)
T d1w5sa2          25 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA   63 (287)
T ss_dssp             HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHH
Confidence            334333344556665432     4667899999999876

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.74  E-value=0.011  Score=40.66  Aligned_cols=31  Identities=29%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             HHHHHHHHhCCCCEEEEeeccCCCccceeec
Q psy15017         57 AASLVAGSLEGYNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        57 ~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~~   87 (97)
                      ....++.++.-.++.|+.-|.||||||.||.
T Consensus       146 ~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~  176 (401)
T d1p9ra_         146 NHDNFRRLIKRPHGIILVTGPTGSGKSTTLY  176 (401)
T ss_dssp             HHHHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred             HHHHHHHHHhhhhceEEEEcCCCCCccHHHH
Confidence            3345678888888888888999999999984

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.064  Score=34.43  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=28.9

Q ss_pred             ecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccce
Q psy15017         43 FDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTY   84 (97)
Q Consensus        43 f~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~   84 (97)
                      |+...+|...++.    +.+++-.+.....+-.|.+|||||-
T Consensus        54 ~~lt~~Q~~~~~~----i~~~~~~~~~~~~LL~GdvGsGKT~   91 (233)
T d2eyqa3          54 FETTPDQAQAINA----VLSDMCQPLAMDRLVCGDVGFGKTE   91 (233)
T ss_dssp             SCCCHHHHHHHHH----HHHHHHSSSCCEEEEECCCCTTTHH
T ss_pred             cccchhHHHHHHH----HHHHHhccCccCeEEEcCCCCCcHH
Confidence            5555678877766    4567777887777888999999984

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.05  E-value=0.021  Score=37.01  Aligned_cols=51  Identities=25%  Similarity=0.397  Sum_probs=35.8

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHHH-HHhC--C--CCEEEEeeccCCCccceee
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLVA-GSLE--G--YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~-~~~~--g--~n~~v~ayG~t~sGKt~T~   86 (97)
                      .++||.|-+.+.-.+++.+.+..|+.. ..+.  |  ....|+-||..|+|||+.+
T Consensus         3 ~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~   58 (265)
T d1r7ra3           3 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA   58 (265)
T ss_dssp             CCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHH
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHH
Confidence            357788877777778888777666642 2332  3  3456889999999999764

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.03  E-value=0.045  Score=40.88  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ..+|.- +......++ ++.|.||+.-|.+|||||.+
T Consensus       104 PHifai-A~~Ay~~m~~~~~~QsIiisGeSGaGKTe~  139 (794)
T d2mysa2         104 PHIFSI-SDNAYQFMLTDRENQSILITGESGAGKTVN  139 (794)
T ss_dssp             SCHHHH-HHHHHHHHHHHTCCEEEEEEECTTSCHHHH
T ss_pred             CcHHHH-HHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Confidence            556644 333444554 68999999999999999965

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.03  E-value=0.047  Score=40.33  Aligned_cols=36  Identities=25%  Similarity=0.444  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+|.- +......++ ++.|.||+.-|.+|||||.+.
T Consensus       106 PHifai-A~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~  142 (712)
T d1d0xa2         106 PHIFAI-SDVAYRSMLDDRQNQSLLITGESGAGKTENT  142 (712)
T ss_dssp             CCHHHH-HHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred             CcHHHH-HHHHHHHHHHhCCCceEEEeCCCCCCHHHHH
Confidence            345533 333344444 689999999999999999864

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=91.89  E-value=0.044  Score=40.90  Aligned_cols=35  Identities=23%  Similarity=0.410  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHh-CCCCEEEEeeccCCCcccee
Q psy15017         50 TTIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        50 ~~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ..+|.- +......++ ++.|.||+.-|.+|||||.+
T Consensus       102 PHiyav-A~~Ay~~m~~~~~nQ~IiisGESGaGKTe~  137 (789)
T d1kk8a2         102 PHLFSV-ADNAYQNMVTDRENQSCLITGESGAGKTEN  137 (789)
T ss_dssp             CCHHHH-HHHHHHHHHHHTSEEEEEEECSTTSSHHHH
T ss_pred             CcHHHH-HHHHHHHHHHhCCCcEEEEEeCCCCCHHHH
Confidence            345543 333444444 68999999999999999976

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.82  E-value=0.043  Score=33.68  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             HHHHHHhCC---CCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEG---YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g---~n~~v~ayG~t~sGKt~T~   86 (97)
                      +-++.++.|   .+..+.-+|.+|||||.-.
T Consensus        21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~   51 (251)
T d1szpa2          21 KNLDTLLGGGVETGSITELFGEFRTGKSQLC   51 (251)
T ss_dssp             HHHHHHHTSSEESSSEEEEEESTTSSHHHHH
T ss_pred             HHHHhhhCCCCcCCeEEEEEcCCCCCHHHHH
Confidence            567888887   5667888999999998644

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.71  E-value=0.037  Score=34.51  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             HHHHHhC---CCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSLE---GYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~~---g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ++...+.   +...+++-||.+|+|||+++
T Consensus        31 ~l~~~l~~~~~~~~~lll~GppGtGKT~l~   60 (276)
T d1fnna2          31 LLGNWLRNPGHHYPRATLLGRPGTGKTVTL   60 (276)
T ss_dssp             HHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred             HHHHHHhCCCCCCCceEEECCCCCCHHHHH
Confidence            4444442   33457888999999999765

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.46  E-value=0.059  Score=39.70  Aligned_cols=35  Identities=31%  Similarity=0.516  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         51 TIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        51 ~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+|.- +......++ ++.|.||+.-|.+|||||.+.
T Consensus        73 Hif~v-A~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~  108 (710)
T d1br2a2          73 HIYAI-ADTAYRSMLQDREDQSILCTGESGAGKTENT  108 (710)
T ss_dssp             CHHHH-HHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred             hHHHH-HHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH
Confidence            45532 333444544 689999999999999999873

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=91.32  E-value=0.062  Score=39.65  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         51 TIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        51 ~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+|.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus        76 Hif~v-A~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~  111 (730)
T d1w7ja2          76 HIFAV-AEEAYKQMARDERNQSIIVSGESGAGKTVSA  111 (730)
T ss_dssp             CHHHH-HHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred             cHHHH-HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHH
Confidence            35643 333444444 589999999999999999764

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=91.20  E-value=0.065  Score=39.31  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         51 TIYELCAASLVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        51 ~v~~~~~~p~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+|.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus        68 Hif~i-A~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~  103 (684)
T d1lkxa_          68 HMYAL-ANDAYRSMRQSQENQCVIISGESGAGKTEAS  103 (684)
T ss_dssp             CHHHH-HHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred             hHHHH-HHHHHHHHHHcCCCeEEEEEcCCCCCHHHHH
Confidence            45533 333444444 588999999999999999764

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.13  E-value=0.049  Score=34.16  Aligned_cols=24  Identities=25%  Similarity=0.140  Sum_probs=19.0

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .++.+++|.+..+  -+.||+|||..
T Consensus        51 ~i~~~l~g~~~~i--~apTGsGKT~~   74 (237)
T d1gkub1          51 WAKRILRKESFAA--TAPTGVGKTSF   74 (237)
T ss_dssp             HHHHHHTTCCEEC--CCCBTSCSHHH
T ss_pred             HHHHHHCCCCEEE--EecCCChHHHH
Confidence            4678899998654  46999999954

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.05  E-value=0.077  Score=33.20  Aligned_cols=16  Identities=50%  Similarity=0.542  Sum_probs=13.8

Q ss_pred             EEEeeccCCCccceee
Q psy15017         71 TILAYGQTGSGKTYTM   86 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~   86 (97)
                      .|+-||.+|+|||+..
T Consensus        34 ~ilL~GpPGtGKT~la   49 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLR   49 (273)
T ss_dssp             EEEEECCTTSCTHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4888999999999864

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.48  E-value=0.062  Score=35.11  Aligned_cols=38  Identities=24%  Similarity=0.318  Sum_probs=28.2

Q ss_pred             ecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccce
Q psy15017         43 FDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTY   84 (97)
Q Consensus        43 f~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~   84 (97)
                      |....+|..+++.    +..++.++....-+-+|.+|||||-
T Consensus        82 FeLT~~Q~~ai~e----i~~d~~~~~~m~rLL~GdvGSGKT~  119 (264)
T d1gm5a3          82 FKLTNAQKRAHQE----IRNDMISEKPMNRLLQGDVGSGKTV  119 (264)
T ss_dssp             SCCCHHHHHHHHH----HHHHHHSSSCCCCEEECCSSSSHHH
T ss_pred             ccCCchHHHHHHH----HHHHhhccCcceeeeeccccccccH
Confidence            3445678888777    4566777776666779999999984

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.26  E-value=0.067  Score=33.17  Aligned_cols=37  Identities=27%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         46 ADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        46 ~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      -..|+++-+.    +...+-.+....++-||..|+|||.++
T Consensus        26 iig~~~~~~~----l~~~i~~~~~~~lll~Gp~G~GKTtla   62 (231)
T d1iqpa2          26 IVGQEHIVKR----LKHYVKTGSMPHLLFAGPPGVGKTTAA   62 (231)
T ss_dssp             CCSCHHHHHH----HHHHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred             ccCcHHHHHH----HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence            3345544433    233333455556778999999999765

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.20  E-value=0.026  Score=36.67  Aligned_cols=18  Identities=33%  Similarity=0.510  Sum_probs=14.5

Q ss_pred             EEEEeeccCCCccceeec
Q psy15017         70 ATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~~   87 (97)
                      +.++.-|..|||||+||.
T Consensus        25 g~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             SCEEEEECTTSCHHHHHH
T ss_pred             CCEEEEecCCccHHHHHH
Confidence            346677999999999973

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.15  E-value=0.084  Score=32.92  Aligned_cols=26  Identities=38%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             HHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+..+++|.+  +++-.+||||||...
T Consensus        39 ~aip~il~g~d--vl~~a~TGsGKT~a~   64 (212)
T d1qdea_          39 RAIMPIIEGHD--VLAQAQSGTGKTGTF   64 (212)
T ss_dssp             HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred             HHHHHHHcCCC--EEeecccccchhhhh
Confidence            35667889998  556789999999754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.03  E-value=0.033  Score=35.70  Aligned_cols=17  Identities=35%  Similarity=0.470  Sum_probs=13.8

Q ss_pred             EEEeeccCCCccceeec
Q psy15017         71 TILAYGQTGSGKTYTMG   87 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~~   87 (97)
                      .++..|..|||||+||.
T Consensus        16 ~~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEEECCCTTSCHHHHHH
T ss_pred             CEEEEeeCCccHHHHHH
Confidence            35567999999999974

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.12  Score=31.90  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=18.7

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..+++|.|..  +-.+||||||..
T Consensus        33 aip~il~g~dvl--~~a~TGsGKTla   56 (206)
T d1veca_          33 SIPIALSGRDIL--ARAKNGTGKSGA   56 (206)
T ss_dssp             HHHHHHTTCCEE--EECCSSSTTHHH
T ss_pred             HHHHHHcCCCEE--eeccCccccccc
Confidence            566788999854  567999999854

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.87  E-value=0.077  Score=32.69  Aligned_cols=24  Identities=33%  Similarity=0.551  Sum_probs=19.1

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..+++|.+  +++.++||||||..
T Consensus        31 aip~il~g~d--vi~~a~tGsGKTla   54 (206)
T d1s2ma1          31 AIPVAITGRD--ILARAKNGTGKTAA   54 (206)
T ss_dssp             HHHHHHHTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHHcCCC--EEEecCCcchhhhh
Confidence            4556888988  66789999999853

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.14  E-value=0.12  Score=31.88  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=18.7

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..+++|.+..  +-.+||||||..
T Consensus        31 aip~il~g~dvl--~~A~TGsGKTla   54 (207)
T d1t6na_          31 CIPQAILGMDVL--CQAKSGMGKTAV   54 (207)
T ss_dssp             HHHHHHTTCCEE--EECCTTSCHHHH
T ss_pred             HHHHHHcCCCeE--EEeccccccccc
Confidence            556788999854  567999999864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=89.10  E-value=0.046  Score=34.45  Aligned_cols=20  Identities=35%  Similarity=0.481  Sum_probs=14.9

Q ss_pred             CCCEEEEeeccCCCccceee
Q psy15017         67 GYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        67 g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +....++-.|.+|+|||.|+
T Consensus         4 ~~~~vi~lvGptGvGKTTTi   23 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTI   23 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHH
Confidence            33445555799999999985

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.072  Score=32.53  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=16.8

Q ss_pred             HHHHhCCCCEEEEeeccCCCcccee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      ++.+++|.|..  .--.||||||..
T Consensus        34 i~~~l~g~~vl--v~apTGsGKT~~   56 (206)
T d1oywa2          34 IDTVLSGRDCL--VVMPTGGGKSLC   56 (206)
T ss_dssp             HHHHHTTCCEE--EECSCHHHHHHH
T ss_pred             HHHHHcCCCEE--EEcCCCCCCcch
Confidence            34578898754  346899999864

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.69  E-value=0.072  Score=32.64  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=18.3

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..+++|.+.  ++-.+||||||..
T Consensus        31 aip~~l~G~dv--ii~a~TGSGKTla   54 (209)
T d1q0ua_          31 IIPGALRGESM--VGQSQTGTGKTHA   54 (209)
T ss_dssp             HHHHHHHTCCE--EEECCSSHHHHHH
T ss_pred             HHHHHHCCCCe--Eeeccccccccee
Confidence            45577889874  4568999999964

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.12  E-value=0.18  Score=30.99  Aligned_cols=27  Identities=33%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             HHHHHHhCC---CCEEEEeeccCCCcccee
Q psy15017         59 SLVAGSLEG---YNATILAYGQTGSGKTYT   85 (97)
Q Consensus        59 p~v~~~~~g---~n~~v~ayG~t~sGKt~T   85 (97)
                      |-++.++.|   .+..+.-+|.+|+|||.-
T Consensus        23 ~~LD~ll~GGlp~G~~~li~G~pGsGKT~~   52 (254)
T d1pzna2          23 KSLDKLLGGGIETQAITEVFGEFGSGKTQL   52 (254)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred             HHHHHhhcCCccCCEEEEEEcCCCCCHHHH
Confidence            567888876   367788899999999864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=87.69  E-value=0.086  Score=35.18  Aligned_cols=25  Identities=36%  Similarity=0.585  Sum_probs=17.3

Q ss_pred             HHHHHh-CCCCEEEEeeccCCCccceee
Q psy15017         60 LVAGSL-EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        60 ~v~~~~-~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ++..++ .+.|  |+.-|.||||||.+|
T Consensus       158 ~l~~~v~~~~n--ili~G~tgSGKTT~l  183 (323)
T d1g6oa_         158 AIKDGIAIGKN--VIVCGGTGSGKTTYI  183 (323)
T ss_dssp             HHHHHHHHTCC--EEEEESTTSSHHHHH
T ss_pred             HHHHHHHhCCC--EEEEeeccccchHHH
Confidence            344444 4555  455799999999877

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.43  E-value=0.084  Score=32.54  Aligned_cols=21  Identities=38%  Similarity=0.608  Sum_probs=15.9

Q ss_pred             CCCCEEEEeeccCCCccceee
Q psy15017         66 EGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        66 ~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+....++-||.+|+|||.+.
T Consensus        30 ~~~~~~lll~Gp~G~GKTtl~   50 (237)
T d1sxjd2          30 SANLPHMLFYGPPGTGKTSTI   50 (237)
T ss_dssp             CTTCCCEEEECSTTSSHHHHH
T ss_pred             cCCCCeEEEECCCCCChHHHH
Confidence            454445788899999999754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.39  E-value=0.075  Score=33.01  Aligned_cols=24  Identities=17%  Similarity=0.102  Sum_probs=17.9

Q ss_pred             HHhCCCCEEEEeeccCCCccceee
Q psy15017         63 GSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        63 ~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .+.+....+++.||..|+|||..+
T Consensus        23 ~l~~~~~~~i~i~G~~G~GKTsLl   46 (283)
T d2fnaa2          23 KLKGLRAPITLVLGLRRTGKSSII   46 (283)
T ss_dssp             HHHHTCSSEEEEEESTTSSHHHHH
T ss_pred             HHHhccCCEEEEEcCCCCcHHHHH
Confidence            334445567889999999999765

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=87.27  E-value=0.19  Score=31.70  Aligned_cols=24  Identities=42%  Similarity=0.462  Sum_probs=18.4

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..+++|.|..  +-.+||||||..
T Consensus        51 ~ip~il~g~dvv--i~a~TGsGKTla   74 (238)
T d1wrba1          51 AIPAILEHRDIM--ACAQTGSGKTAA   74 (238)
T ss_dssp             HHHHHHTTCCEE--EECCTTSSHHHH
T ss_pred             HhhhhhCCCCEE--EECCCCCCccee
Confidence            455778999854  467999999874

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.2  Score=31.43  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=18.8

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..+++|.+..  +-.+||||||..
T Consensus        47 aIp~il~g~dvi--~~a~TGSGKTla   70 (222)
T d2j0sa1          47 AIKQIIKGRDVI--AQSQSGTGKTAT   70 (222)
T ss_dssp             HHHHHHTTCCEE--EECCTTSSHHHH
T ss_pred             HHHHHHCCCCeE--EEcCcchhhhhh
Confidence            566788999854  567999999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=0.07  Score=33.74  Aligned_cols=17  Identities=47%  Similarity=0.599  Sum_probs=13.2

Q ss_pred             EEEEeeccCCCccceee
Q psy15017         70 ATILAYGQTGSGKTYTM   86 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~   86 (97)
                      ..++-.|.+|+|||.|+
T Consensus        10 ~vi~lvGptGvGKTTTi   26 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTI   26 (211)
T ss_dssp             EEEEEECCTTSCHHHHH
T ss_pred             EEEEEECCCCCCHHHHH
Confidence            34445699999999986

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.71  E-value=0.099  Score=31.85  Aligned_cols=23  Identities=35%  Similarity=0.329  Sum_probs=17.6

Q ss_pred             HHHHhCCCCEEEEeeccCCCcccee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      +..+++|.|+  +....||||||..
T Consensus        34 i~~l~~~~~~--il~apTGsGKT~~   56 (202)
T d2p6ra3          34 VEKVFSGKNL--LLAMPTAAGKTLL   56 (202)
T ss_dssp             HHHHTTCSCE--EEECSSHHHHHHH
T ss_pred             HHHHHcCCCE--EEEcCCCCchhHH
Confidence            5567788874  4579999999965

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=86.43  E-value=0.12  Score=28.86  Aligned_cols=14  Identities=29%  Similarity=0.323  Sum_probs=10.8

Q ss_pred             EeeccCCCccceee
Q psy15017         73 LAYGQTGSGKTYTM   86 (97)
Q Consensus        73 ~ayG~t~sGKt~T~   86 (97)
                      +....||||||..+
T Consensus        11 il~~~tGsGKT~~~   24 (140)
T d1yksa1          11 VLDFHPGAGKTRRF   24 (140)
T ss_dssp             EECCCTTSSTTTTH
T ss_pred             EEEcCCCCChhHHH
Confidence            34577999999765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=86.41  E-value=0.22  Score=30.65  Aligned_cols=27  Identities=37%  Similarity=0.464  Sum_probs=21.2

Q ss_pred             HHHHHHhCC---CCEEEEeeccCCCcccee
Q psy15017         59 SLVAGSLEG---YNATILAYGQTGSGKTYT   85 (97)
Q Consensus        59 p~v~~~~~g---~n~~v~ayG~t~sGKt~T   85 (97)
                      +-++.++.|   ....+.-+|.+|+|||.-
T Consensus        13 ~~LD~~l~GGi~~gsl~li~G~pGsGKT~l   42 (242)
T d1tf7a2          13 VRLDEMCGGGFFKDSIILATGATGTGKTLL   42 (242)
T ss_dssp             HHHHHHTTSSEESSCEEEEEECTTSSHHHH
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHHH
Confidence            457788875   567788899999999853

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=86.11  E-value=0.27  Score=29.75  Aligned_cols=28  Identities=36%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             HHHHHHhCC---CCEEEEeeccCCCccceee
Q psy15017         59 SLVAGSLEG---YNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        59 p~v~~~~~g---~n~~v~ayG~t~sGKt~T~   86 (97)
                      |-++.++.|   ....+..+|.+|+|||..+
T Consensus        21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~   51 (258)
T d2i1qa2          21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM   51 (258)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred             HHHHHhcCCCccCCeEEEEEeCCCCCHHHHH
Confidence            678888887   3667778899999998653

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.72  E-value=0.17  Score=31.03  Aligned_cols=24  Identities=33%  Similarity=0.253  Sum_probs=16.4

Q ss_pred             HHHHhCCCCEEEEeeccCCCccceee
Q psy15017         61 VAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        61 v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ++.++++.++.| + ..||+|||.++
T Consensus        79 v~~~~~~~~~ll-~-~~tG~GKT~~a  102 (206)
T d2fz4a1          79 LERWLVDKRGCI-V-LPTGSGKTHVA  102 (206)
T ss_dssp             HHHHTTTSEEEE-E-ESSSTTHHHHH
T ss_pred             HHHHHhCCCcEE-E-eCCCCCceehH
Confidence            455666665543 3 58999999875

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=85.57  E-value=0.19  Score=34.71  Aligned_cols=46  Identities=28%  Similarity=0.410  Sum_probs=33.0

Q ss_pred             eeeccEEecCCCcHHHHHHHHHHHHHHHHhCCCCEEEEeeccCCCccceee
Q psy15017         36 SFTFDYVFDMADVQTTIYELCAASLVAGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        36 ~F~fd~vf~~~~~q~~v~~~~~~p~v~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      .|....-|-+.-+|....+.    +++.+-.|....+ -.|.+||||+++|
T Consensus         3 ~f~~~~~~~p~gDQP~aI~~----l~~~l~~g~~~q~-l~GltGS~ka~~i   48 (413)
T d1t5la1           3 RFQLVAPYEPQGDQPQAIAK----LVDGLRRGVKHQT-LLGATGTGKTFTI   48 (413)
T ss_dssp             CCCCCCSSCCCTTHHHHHHH----HHHHHHHTCSEEE-EEECTTSCHHHHH
T ss_pred             ceEEecCCCCCCCCHHHHHH----HHHHHhcCCCcEE-EeCCCCcHHHHHH
Confidence            35555667788888776555    5667777765444 3599999999988

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=85.14  E-value=0.085  Score=35.58  Aligned_cols=15  Identities=40%  Similarity=0.760  Sum_probs=13.2

Q ss_pred             EEeeccCCCccceee
Q psy15017         72 ILAYGQTGSGKTYTM   86 (97)
Q Consensus        72 v~ayG~t~sGKt~T~   86 (97)
                      ++..|.||||||.+|
T Consensus        53 ~~I~G~tGsGKT~~l   67 (433)
T d1e9ra_          53 LLVNGATGTGKSVLL   67 (433)
T ss_dssp             EEEEECTTSSHHHHH
T ss_pred             EEEEeCCCCcHHHHH
Confidence            567999999999886

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=84.96  E-value=0.28  Score=31.48  Aligned_cols=18  Identities=33%  Similarity=0.516  Sum_probs=14.9

Q ss_pred             CEEEEeeccCCCccceee
Q psy15017         69 NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        69 n~~v~ayG~t~sGKt~T~   86 (97)
                      ...++-||..|+|||+..
T Consensus        45 ~~~iLL~GppGtGKT~la   62 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLA   62 (256)
T ss_dssp             CCEEEEECCTTSCHHHHH
T ss_pred             CCeEEeeCCCCCCccHHH
Confidence            456888999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.57  E-value=0.15  Score=32.62  Aligned_cols=48  Identities=29%  Similarity=0.370  Sum_probs=26.9

Q ss_pred             ccEEecCCCcHHHHHHHHHHHHHHH-HhC--CC--CEEEEeeccCCCccceee
Q psy15017         39 FDYVFDMADVQTTIYELCAASLVAG-SLE--GY--NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        39 fd~vf~~~~~q~~v~~~~~~p~v~~-~~~--g~--n~~v~ayG~t~sGKt~T~   86 (97)
                      ||.|-+.+..-+++-+.+..|+... .++  |.  .-.++=||..|+|||+..
T Consensus         3 ~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~   55 (258)
T d1e32a2           3 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA   55 (258)
T ss_dssp             GGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHH
T ss_pred             hhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHH
Confidence            4445444444444444444444422 232  32  335778999999999754

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.21  E-value=0.25  Score=30.73  Aligned_cols=24  Identities=38%  Similarity=0.678  Sum_probs=18.3

Q ss_pred             HHHHHhCCCCEEEEeeccCCCcccee
Q psy15017         60 LVAGSLEGYNATILAYGQTGSGKTYT   85 (97)
Q Consensus        60 ~v~~~~~g~n~~v~ayG~t~sGKt~T   85 (97)
                      .+..++.|.+.  ++-..||||||..
T Consensus        42 aip~il~g~dv--l~~a~TGsGKTla   65 (218)
T d2g9na1          42 AILPCIKGYDV--IAQAQSGTGKTAT   65 (218)
T ss_dssp             HHHHHHHTCCE--EEECCTTSSHHHH
T ss_pred             HHHHHHcCCCE--EEEcccchhhhhh
Confidence            45567889884  4578999999864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=83.50  E-value=0.24  Score=31.09  Aligned_cols=17  Identities=35%  Similarity=0.507  Sum_probs=9.0

Q ss_pred             EEEEeeccCCCccceee
Q psy15017         70 ATILAYGQTGSGKTYTM   86 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~   86 (97)
                      ..++-.|.+|+|||.|+
T Consensus        13 ~vi~lvGptGvGKTTTi   29 (211)
T d1j8yf2          13 YVIMLVGVQGTGKATTA   29 (211)
T ss_dssp             EEEEEECSCCC----HH
T ss_pred             EEEEEECCCCCCHHHHH
Confidence            33444599999999985

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.44  E-value=0.42  Score=29.12  Aligned_cols=23  Identities=43%  Similarity=0.615  Sum_probs=15.8

Q ss_pred             HhCCCCEEEEeeccCCCccceee
Q psy15017         64 SLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        64 ~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      +-.+.-..++-||..|+|||.+.
T Consensus        30 i~~~~~~~lLl~Gp~G~GKttl~   52 (227)
T d1sxjc2          30 VDEGKLPHLLFYGPPGTGKTSTI   52 (227)
T ss_dssp             HHTTCCCCEEEECSSSSSHHHHH
T ss_pred             HHcCCCCeEEEECCCCCChhHHH
Confidence            33455434566999999998654

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.82  E-value=0.1  Score=35.14  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=15.4

Q ss_pred             CCEEEEeeccCCCccceeec
Q psy15017         68 YNATILAYGQTGSGKTYTMG   87 (97)
Q Consensus        68 ~n~~v~ayG~t~sGKt~T~~   87 (97)
                      .++.++.-+..|||||+||.
T Consensus        15 ~~g~~lv~A~AGsGKT~~l~   34 (485)
T d1w36b1          15 LQGERLIEASAGTGKTFTIA   34 (485)
T ss_dssp             CSSCEEEECCTTSCHHHHHH
T ss_pred             CCCCeEEEEcCchHHHHHHH
Confidence            34456667899999999984

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.44  E-value=0.41  Score=27.98  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=19.7

Q ss_pred             HHHHHHhC-CC--CEEEEeeccCCCcccee
Q psy15017         59 SLVAGSLE-GY--NATILAYGQTGSGKTYT   85 (97)
Q Consensus        59 p~v~~~~~-g~--n~~v~ayG~t~sGKt~T   85 (97)
                      +-++.++. |.  ...+.-+|.+|||||.-
T Consensus        10 ~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l   39 (242)
T d1n0wa_          10 KELDKLLQGGIETGSITEMFGEFRTGKTQI   39 (242)
T ss_dssp             HHHHHHTTTSEETTSEEEEECCTTSSHHHH
T ss_pred             HHHHHhhcCCCcCCEEEEEEeCCCCCHHHH
Confidence            45677786 32  55667789999999854

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=81.63  E-value=0.39  Score=29.59  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=22.4

Q ss_pred             CcHHHHHHHHHHHHHHHHhCCC--CEEEEeeccCCCccceee
Q psy15017         47 DVQTTIYELCAASLVAGSLEGY--NATILAYGQTGSGKTYTM   86 (97)
Q Consensus        47 ~~q~~v~~~~~~p~v~~~~~g~--n~~v~ayG~t~sGKt~T~   86 (97)
                      ..|+++-+. +...++....+.  -..++-||..|+|||.+.
T Consensus        12 vGq~~~~~~-L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla   52 (239)
T d1ixsb2          12 IGQERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA   52 (239)
T ss_dssp             CSCHHHHHH-HHHHHHHHTTSSSCCCCEEEECCTTSCHHHHH
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence            355555433 334455544321  233556999999999654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.36  E-value=0.44  Score=29.14  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=17.4

Q ss_pred             HHHhCCCCEEEEeeccCCCccceee
Q psy15017         62 AGSLEGYNATILAYGQTGSGKTYTM   86 (97)
Q Consensus        62 ~~~~~g~n~~v~ayG~t~sGKt~T~   86 (97)
                      ..+.++....++-||..|+|||.+.
T Consensus        29 ~~~~~~~~~~~ll~Gp~G~GKTt~a   53 (224)
T d1sxjb2          29 QIAKDGNMPHMIISGMPGIGKTTSV   53 (224)
T ss_dssp             HHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred             HHHHcCCCCeEEEECCCCCCchhhH
Confidence            3344565445667999999999754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.33  E-value=0.19  Score=31.14  Aligned_cols=17  Identities=35%  Similarity=0.593  Sum_probs=14.1

Q ss_pred             EEEEeeccCCCccceee
Q psy15017         70 ATILAYGQTGSGKTYTM   86 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~   86 (97)
                      -.++-||..|+|||.+.
T Consensus        53 ~~lll~GPpG~GKTt~a   69 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAA   69 (253)
T ss_dssp             SEEEEECSTTSSHHHHH
T ss_pred             ceEEEECCCCCCHHHHH
Confidence            46778999999999764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=80.86  E-value=0.24  Score=31.47  Aligned_cols=17  Identities=35%  Similarity=0.397  Sum_probs=13.9

Q ss_pred             EEEEeeccCCCccceee
Q psy15017         70 ATILAYGQTGSGKTYTM   86 (97)
Q Consensus        70 ~~v~ayG~t~sGKt~T~   86 (97)
                      ..|+-||.+|+|||+..
T Consensus        41 ~~vLL~GppGtGKT~la   57 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALA   57 (246)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             eEEEEECcCCCCHHHHH
Confidence            46788999999998753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=80.59  E-value=0.25  Score=30.84  Aligned_cols=16  Identities=44%  Similarity=0.472  Sum_probs=12.7

Q ss_pred             EEEeeccCCCccceee
Q psy15017         71 TILAYGQTGSGKTYTM   86 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~   86 (97)
                      .++-.|.+|+|||.|+
T Consensus        12 vi~lvGp~GvGKTTTi   27 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTA   27 (207)
T ss_dssp             EEEEECCTTTTHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3444599999999886

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=80.40  E-value=0.19  Score=31.58  Aligned_cols=16  Identities=38%  Similarity=0.636  Sum_probs=12.7

Q ss_pred             EEEeeccCCCccceee
Q psy15017         71 TILAYGQTGSGKTYTM   86 (97)
Q Consensus        71 ~v~ayG~t~sGKt~T~   86 (97)
                      .++-.|.+|+|||.|+
T Consensus        13 vi~lvGptGvGKTTTi   28 (213)
T d1vmaa2          13 VIMVVGVNGTGKTTSC   28 (213)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3444599999999985