Psyllid ID: psy1504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MVLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYTK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvlgitrpFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKldmvstretapgqivnlvsndvsrfDLVTVTshfmwsspIISLIVTYIIYKDIGNAAFFGLAAAFCViplqlcstytk
Flexible Loop (DISEMBL)
mvlgitrpFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVstretapgqivnlvsndVSRFDLVTVTshfmwsspIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYTK
Low Complexity Region (SEG)
MVLGITRPFVLGMFLSYFKvasttatetaavaggaLVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNaaffglaaafCVIPLQLCSTYTK
Disordered region (IsUnstruct)
**LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTY**
Disordered Region (DISOPRED)
MVLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLK*************IVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT*
Disordered Region (DISEMBL)
MVLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYTK
Disordered Region (DISPRO)
MVLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYTK
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
O15439	1325	Multidrug resistance-asso	no	N/A	0.941	0.108	0.346	2e-20
P91660	1290	Probable multidrug resist	no	N/A	0.601	0.071	0.380	2e-16
Q09YH0	1481	Cystic fibrosis transmemb	N/A	N/A	0.856	0.088	0.297	2e-11
Q07DV2	1481	Cystic fibrosis transmemb	N/A	N/A	0.856	0.088	0.297	2e-11
Q2QLF9	1481	Cystic fibrosis transmemb	no	N/A	0.856	0.088	0.297	2e-11
Q09YK5	1480	Cystic fibrosis transmemb	N/A	N/A	0.856	0.088	0.297	2e-11
P26362	1492	Cystic fibrosis transmemb	N/A	N/A	0.856	0.087	0.267	6e-11
Q2QLB4	1480	Cystic fibrosis transmemb	N/A	N/A	0.856	0.088	0.290	6e-11
Q2IBF6	1480	Cystic fibrosis transmemb	N/A	N/A	0.856	0.088	0.290	7e-11
Q2QLE5	1480	Cystic fibrosis transmemb	no	N/A	0.856	0.088	0.290	7e-11

>sp|O15439|MRP4_HUMAN Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 87/147 (59%), Gaps = 3/147 (2%)

Query: 5   ITRPFVLGMFLSYFK---VASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRM 61
           + +P  LG  ++YF+      + A  TA      L   T + ++L+  Y       G+R+
Sbjct: 107 VIQPIFLGKIINYFENYDPMDSVALNTAYAYATVLTFCTLILAILHHLYFYHVQCAGMRL 166

Query: 62  RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
           R A+C +++RK L+L  ++  +T  GQIVNL+SNDV++FD VTV  HF+W+ P+ ++ VT
Sbjct: 167 RVAMCHMIYRKALRLSNMAMGKTTTGQIVNLLSNDVNKFDQVTVFLHFLWAGPLQAIAVT 226

Query: 122 YIIYKDIGNAAFFGLAAAFCVIPLQLC 148
            +++ +IG +   G+A    ++PLQ C
Sbjct: 227 ALLWMEIGISCLAGMAVLIILLPLQSC 253

May be an organic anion pump relevant to cellular detoxification.
Homo sapiens (taxid: 9606)

>sp|P91660|L259_DROME Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster GN=l(2)03659 PE=2 SV=3

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 60/92 (65%)

Query: 56  HIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPI 115
           H+  +MR A+ S++FRK L+L   +  +T  G +VNL+SND+ R D    T H++W  P+
Sbjct: 150 HVCFKMRVAMGSMIFRKALRLTKGALGDTTSGHVVNLISNDIPRLDSAPYTVHYLWVGPL 209

Query: 116 ISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQL 147
             L++TY++Y++IG +A FG+      +P+Q+
Sbjct: 210 QVLVITYLMYQEIGISAVFGVLFMLLFMPIQM 241

Vital for development.

Drosophila melanogaster (taxid: 7227)

>sp|Q09YH0|CFTR_SAIBB Cystic fibrosis transmembrane conductance regulator OS=Saimiri boliviensis boliviensis GN=CFTR PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 74/131 (56%)

Query: 7   RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
           +P +LG  ++ +   + T    A   G  L L+  + +LL         HIG++MR A+ 
Sbjct: 98  QPLLLGRIIASYDPDNKTERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMF 157

Query: 67  SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
           SL+++K LKL      + + GQ+V+L+SN++++FD     +HF+W +P+   ++  +I++
Sbjct: 158 SLIYKKTLKLSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWE 217

Query: 127 DIGNAAFFGLA 137
            +  +AF GL 
Sbjct: 218 LLQASAFCGLG 228

Involved in the transport of chloride ions. May regulate bicarbonate secretion and salvage in epithelial cells by regulating the SLC4A7 transporter.

Saimiri boliviensis boliviensis (taxid: 39432)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 9

>sp|Q07DV2|CFTR_AOTNA Cystic fibrosis transmembrane conductance regulator OS=Aotus nancymaae GN=CFTR PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 74/131 (56%)

Query: 7   RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
           +P +LG  ++ +   + T    A   G  L L+  + +LL         HIG++MR A+ 
Sbjct: 98  QPLLLGRIIASYDPDNKTERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMF 157

Query: 67  SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
           SL+++K LKL      + + GQ+V+L+SN++++FD     +HF+W +P+   ++  +I++
Sbjct: 158 SLIYKKTLKLSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWE 217

Query: 127 DIGNAAFFGLA 137
            +  +AF GL 
Sbjct: 218 LLQASAFCGLG 228

Involved in the transport of chloride ions. May regulate bicarbonate secretion and salvage in epithelial cells by regulating the SLC4A7 transporter.

Aotus nancymaae (taxid: 37293)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 9

>sp|Q2QLF9|CFTR_CALJA Cystic fibrosis transmembrane conductance regulator OS=Callithrix jacchus GN=CFTR PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 74/131 (56%)

Query: 7   RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
           +P +LG  ++ +   + T    A   G  L L+  + +LL         HIG++MR A+ 
Sbjct: 98  QPLLLGRIIASYDPDNKTERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMF 157

Query: 67  SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
           SL+++K LKL      + + GQ+V+L+SN++++FD     +HF+W +P+   ++  +I++
Sbjct: 158 SLIYKKTLKLSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWE 217

Query: 127 DIGNAAFFGLA 137
            +  +AF GL 
Sbjct: 218 LLQASAFCGLG 228

Involved in the transport of chloride ions. May regulate bicarbonate secretion and salvage in epithelial cells by regulating the SLC4A7 transporter.

Callithrix jacchus (taxid: 9483)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 9

>sp|Q09YK5|CFTR_ATEGE Cystic fibrosis transmembrane conductance regulator OS=Ateles geoffroyi GN=CFTR PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 74/131 (56%)

Query: 7   RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
           +P +LG  ++ +   + T    A   G  L L+  + +LL         HIG++MR A+ 
Sbjct: 98  QPLLLGRIIASYDPDNKTERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMF 157

Query: 67  SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
           SL+++K LKL      + + GQ+V+L+SN++++FD     +HF+W +P+   ++  +I++
Sbjct: 158 SLIYKKTLKLSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWE 217

Query: 127 DIGNAAFFGLA 137
            +  +AF GL 
Sbjct: 218 LLQASAFCGLG 228

Involved in the transport of chloride ions. May regulate bicarbonate secretion and salvage in epithelial cells by regulating the SLC4A7 transporter.

Ateles geoffroyi (taxid: 9509)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 9

>sp|P26362|CFTR_SQUAC Cystic fibrosis transmembrane conductance regulator OS=Squalus acanthias GN=CFTR PE=2 SV=1

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 70/131 (53%)

Query: 7   RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
           +P  LG  ++ +   +T   E A      L L+  + +L          H+G++MR A+ 
Sbjct: 99  QPLCLGRIIASYNAKNTYEREIAYYLALGLCLLFVVRTLFLHPAVFGLQHLGMQMRIALF 158

Query: 67  SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
           SL+++K LK+      +   GQ+V+L+SN++++FD     +HF+W +P+  +++  +I+ 
Sbjct: 159 SLIYKKILKMSSRVLDKIDTGQLVSLLSNNLNKFDEGVAVAHFVWIAPVQVVLLMGLIWN 218

Query: 127 DIGNAAFFGLA 137
           ++    F GL 
Sbjct: 219 ELTEFVFCGLG 229

Involved in the transport of chloride ions.

Squalus acanthias (taxid: 7797)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 9

>sp|Q2QLB4|CFTR_CALMO Cystic fibrosis transmembrane conductance regulator OS=Callicebus moloch GN=CFTR PE=3 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 73/131 (55%)

Query: 7   RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
           +P +LG  ++ +   + T    A   G  L L+  + +LL         HIG++MR A+ 
Sbjct: 98  QPLLLGRIIASYDPDNKTERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMF 157

Query: 67  SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
           SL+++K LKL      + + GQ+V+L+SN++++FD     +HF+W +P+   ++  +I++
Sbjct: 158 SLIYKKTLKLSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWE 217

Query: 127 DIGNAAFFGLA 137
            +  + F GL 
Sbjct: 218 LLQASVFCGLG 228

Involved in the transport of chloride ions. May regulate bicarbonate secretion and salvage in epithelial cells by regulating the SLC4A7 transporter.

Callicebus moloch (taxid: 9523)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 9

>sp|Q2IBF6|CFTR_GORGO Cystic fibrosis transmembrane conductance regulator OS=Gorilla gorilla gorilla GN=CFTR PE=3 SV=1

 Score = 66.2 bits (160), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 73/131 (55%)

Query: 7   RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
           +P +LG  ++ +   +      A   G  L L+  + +LL         HIG++MR A+ 
Sbjct: 98  QPLLLGRIIASYDPDNKEERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMF 157

Query: 67  SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
           SL+++K LKL      + + GQ+V+L+SN++++FD     +HF+W +P+   ++  +I++
Sbjct: 158 SLIYKKTLKLSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWE 217

Query: 127 DIGNAAFFGLA 137
            +  +AF GL 
Sbjct: 218 LLQASAFCGLG 228

Involved in the transport of chloride ions. May regulate bicarbonate secretion and salvage in epithelial cells by regulating the SLC4A7 transporter.

Gorilla gorilla gorilla (taxid: 9595)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 9

>sp|Q2QLE5|CFTR_PANTR Cystic fibrosis transmembrane conductance regulator OS=Pan troglodytes GN=CFTR PE=3 SV=1

 Score = 66.2 bits (160), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 73/131 (55%)

Query: 7   RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
           +P +LG  ++ +   +      A   G  L L+  + +LL         HIG++MR A+ 
Sbjct: 98  QPLLLGRIIASYDPDNKEERSIAIYLGIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMF 157

Query: 67  SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
           SL+++K LKL      + + GQ+V+L+SN++++FD     +HF+W +P+   ++  +I++
Sbjct: 158 SLIYKKTLKLSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVALLMGLIWE 217

Query: 127 DIGNAAFFGLA 137
            +  +AF GL 
Sbjct: 218 LLQASAFCGLG 228

Involved in the transport of chloride ions. May regulate bicarbonate secretion and salvage in epithelial cells by regulating the SLC4A7 transporter.

Pan troglodytes (taxid: 9598)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
340721339	1378	PREDICTED: multidrug resistance-associat	0.908	0.100	0.438	9e-28
350406706	1378	PREDICTED: multidrug resistance-associat	0.908	0.100	0.438	1e-27
345491363	1410	PREDICTED: multidrug resistance-associat	0.941	0.102	0.458	2e-27
383847295	1393	PREDICTED: multidrug resistance-associat	0.934	0.102	0.414	3e-26
347966549	1375	AGAP001775-PA [Anopheles gambiae str. PE	0.954	0.106	0.390	5e-26
307177052	1861	Probable multidrug resistance-associated	0.849	0.069	0.438	5e-26
307196486	497	Probable multidrug resistance-associated	0.849	0.261	0.446	5e-26
345498054	1340	PREDICTED: probable multidrug resistance	0.954	0.108	0.404	8e-26
332017213	1393	Putative multidrug resistance-associated	0.849	0.093	0.438	1e-25
118788046	1330	AGAP006427-PB [Anopheles gambiae str. PE	0.947	0.109	0.376	2e-25

>gi|340721339|ref|XP_003399080.1| PREDICTED: multidrug resistance-associated protein 4-like [Bombus terrestris]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 90/139 (64%)

Query: 8   PFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCS 67
           P +LG  L YFK  +T   ETA +  G + + T +N +        + H+G R+R A CS
Sbjct: 111 PMLLGGLLRYFKKNTTETYETALLYAGGICIATAINVIALNQVVFGAFHVGARIRVATCS 170

Query: 68  LVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKD 127
           +V+RK L+L   +  ETAPG++VNLV+NDV+RFDLV++  H MWS+P+ +LI+ Y +Y +
Sbjct: 171 VVYRKALRLSKTALGETAPGKVVNLVANDVNRFDLVSIFIHHMWSAPLSTLIIAYFLYIE 230

Query: 128 IGNAAFFGLAAAFCVIPLQ 146
            G A   G+AA F V+P+Q
Sbjct: 231 AGYAGLIGIAAVFVVVPIQ 249

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406706|ref|XP_003487856.1| PREDICTED: multidrug resistance-associated protein 4-like [Bombus impatiens]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 90/139 (64%)

Query: 8   PFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCS 67
           P +LG  L YFK  +T   ETA +  G + + T +N +        + H+G R+R A CS
Sbjct: 111 PMLLGGLLRYFKKNTTETYETALLYAGGICIATAINVIALNQVVFGAFHVGARIRVATCS 170

Query: 68  LVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKD 127
           +V+RK L+L   +  ETAPG++VNLV+NDV+RFDLV++  H MWS+P+ +LI+ Y +Y +
Sbjct: 171 VVYRKALRLSKTALGETAPGKVVNLVANDVNRFDLVSIFIHHMWSAPLSTLIIAYFLYIE 230

Query: 128 IGNAAFFGLAAAFCVIPLQ 146
            G A   G+AA F V+P+Q
Sbjct: 231 AGYAGLIGIAAVFVVVPIQ 249

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491363|ref|XP_001604413.2| PREDICTED: multidrug resistance-associated protein 4-like [Nasonia vitripennis]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 95/146 (65%), Gaps = 2/146 (1%)

Query: 2   VLGITRPFVLGMFLSYFKVASTTATETA-AVAGGALVLITFLNSLLNAHYNTMSSHIGLR 60
           VL +  P +LG  L +FK   TT  E A   AGG  + I      +N      + HIG R
Sbjct: 105 VLRLGTPILLGALLRHFKPEPTTTYEAALCYAGGISIAIAINAITMNQGLFD-AFHIGSR 163

Query: 61  MRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIV 120
           +R AVCS+V+RK LKL++ +  ETAPG++VNLV+NDV+RFDLV++T H MWS+PI ++I+
Sbjct: 164 IRIAVCSIVYRKALKLNLTALGETAPGKVVNLVANDVNRFDLVSITLHHMWSAPISAVII 223

Query: 121 TYIIYKDIGNAAFFGLAAAFCVIPLQ 146
           +Y +Y++ G A   G+ A F V P+Q
Sbjct: 224 SYFLYREAGWAGPIGMIAVFIVAPIQ 249

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847295|ref|XP_003699290.1| PREDICTED: multidrug resistance-associated protein 4-like [Megachile rotundata]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 93/147 (63%), Gaps = 4/147 (2%)

Query: 2   VLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLN--SLLNAHYNTMSSHIGL 59
           V+ +  P +LG  L YF+ ++    ETA      + + T +N  +L  A +     H+G 
Sbjct: 105 VIRLGTPILLGGLLRYFRKSTDETYETALWYAAGICIATAINVITLNQAIFGAF--HVGA 162

Query: 60  RMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLI 119
           R+R A CS+V+RK L+L   +  ETAPG++VNLV+NDV+RFDLV++  H MWS+P+ +LI
Sbjct: 163 RIRVATCSVVYRKALRLSKTALGETAPGKVVNLVANDVNRFDLVSIFIHHMWSAPLSALI 222

Query: 120 VTYIIYKDIGNAAFFGLAAAFCVIPLQ 146
           + Y +Y + G A   G+AA F V+P+Q
Sbjct: 223 IAYFLYTEAGYAGLIGIAAVFVVVPIQ 249

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966549|ref|XP_551022.4| AGAP001775-PA [Anopheles gambiae str. PEST] gi|333470010|gb|EAL38532.4| AGAP001775-PA [Anopheles gambiae str. PEST]

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/146 (39%), Positives = 95/146 (65%)

Query: 1   MVLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLR 60
           +V+ + +P  LG  L YF+  +    E+A +  GA+VL+  L+ +    Y   S   G++
Sbjct: 100 IVIRLAQPIFLGWLLMYFRKDTEVTRESAFLYAGAIVLLNALSVITINQYVLGSFQNGMK 159

Query: 61  MRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIV 120
           +R AVCS+++RK L+L   +  +TAPG++VNL+SNDV+RFD+V+V  H MWS+P++++I+
Sbjct: 160 VRIAVCSVIYRKALRLSRTALGDTAPGKVVNLLSNDVNRFDIVSVFLHSMWSAPLLAIII 219

Query: 121 TYIIYKDIGNAAFFGLAAAFCVIPLQ 146
             ++Y +IG A   G+   F V P+Q
Sbjct: 220 GVLLYLEIGVAGLIGMIVIFIVTPIQ 245

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177052|gb|EFN66323.1| Probable multidrug resistance-associated protein lethal(2)03659 [Camponotus floridanus]

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/130 (43%), Positives = 85/130 (65%)

Query: 17  YFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKL 76
           YF+  S    E A      + +++ +N +        + H+G  +R AVCS+V+RK L+L
Sbjct: 596 YFRKDSGETYENALWYAAGICMMSGVNVISVNQSIFGAYHVGANVRVAVCSVVYRKALRL 655

Query: 77  DMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGL 136
              +  ETAPG++VNLV+NDVSRFDLV++  H MWS+P+ +LIV YI+Y+D+G A   G+
Sbjct: 656 SKTALGETAPGKVVNLVANDVSRFDLVSILIHHMWSAPLSALIVAYILYQDVGYAGLIGI 715

Query: 137 AAAFCVIPLQ 146
           AA F V+P+Q
Sbjct: 716 AAIFVVVPIQ 725

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196486|gb|EFN78038.1| Probable multidrug resistance-associated protein lethal(2)03659 [Harpegnathos saltator]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 86/130 (66%)

Query: 17  YFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKL 76
           YF+  ST   E A      + + T +N L        + HIG ++R AVCS+V+RK L+L
Sbjct: 145 YFRKDSTLTYEVALCYAAGICVATAVNVLSGNQTIFNAFHIGAKVRVAVCSVVYRKALRL 204

Query: 77  DMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGL 136
              +  ETAPG++VNLV+NDV+RFDLVT+  H+MWS+P+ +++V YI+Y ++G A   G+
Sbjct: 205 SKTALGETAPGKVVNLVANDVNRFDLVTIFIHYMWSAPLSAIVVAYILYTEVGYAGLIGI 264

Query: 137 AAAFCVIPLQ 146
           AA F V+P+Q
Sbjct: 265 AAIFVVVPIQ 274

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498054|ref|XP_001600523.2| PREDICTED: probable multidrug resistance-associated protein lethal(2)03659-like [Nasonia vitripennis]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 91/146 (62%)

Query: 1   MVLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLR 60
           +VL +++P +L   L YFK  S T  E A +  G +VL + LN L+   Y     H+G++
Sbjct: 117 IVLRVSQPLLLARLLKYFKSDSETTAEEAYLYAGGVVLCSALNVLVIHPYMMAILHMGMK 176

Query: 61  MRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIV 120
           MR A C+L++RK LKL   +  ET  GQ VNL+SNDV+RFD+ T+  H++W  P+ ++IV
Sbjct: 177 MRVACCTLIYRKSLKLSRTALGETTVGQAVNLLSNDVNRFDVATIFLHYLWIGPLETIIV 236

Query: 121 TYIIYKDIGNAAFFGLAAAFCVIPLQ 146
            Y+++ ++  +A  G+A     IPLQ
Sbjct: 237 MYVMFNEVQESAIIGVATLLMFIPLQ 262

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017213|gb|EGI58001.1| Putative multidrug resistance-associated protein lethal(2)03659 [Acromyrmex echinatior]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 85/130 (65%)

Query: 17  YFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKL 76
           YF+  S    E A   G  + + T +N +        + H+G ++R AVCS+V+RK L+L
Sbjct: 119 YFRKDSVEPYENALWFGAGICIATGMNVISGNQTIFGAFHVGAKVRVAVCSVVYRKALRL 178

Query: 77  DMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGL 136
              +  ETAPG++VNLV+NDV+RFDLV++  H MWS+P+ +LIV YI+Y+ +G A   G+
Sbjct: 179 SKTALGETAPGKVVNLVANDVNRFDLVSIFIHHMWSAPLSALIVAYILYQQVGYAGLIGI 238

Query: 137 AAAFCVIPLQ 146
           AA F V+P+Q
Sbjct: 239 AAIFVVVPIQ 248

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118788046|ref|XP_557101.2| AGAP006427-PB [Anopheles gambiae str. PEST] gi|116127090|gb|EAL40076.2| AGAP006427-PB [Anopheles gambiae str. PEST]

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 91/146 (62%), Gaps = 1/146 (0%)

Query: 1   MVLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLR 60
           M+  +++PF LG  ++Y+       TE A +  GA+VL + +N L    Y     H+G++
Sbjct: 105 MLFKVSQPFFLGKLVAYYSRQQGDITE-AYLYAGAVVLCSAINVLFIHPYMLSQLHLGMK 163

Query: 61  MRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIV 120
           +R A CS+++RK L+L   +  +T  GQ+VNL+SNDV R DL  +  H++W  P+ +L+V
Sbjct: 164 LRVAACSMIYRKSLRLSKTALGDTTAGQVVNLLSNDVGRLDLAVLFVHYLWIGPLETLVV 223

Query: 121 TYIIYKDIGNAAFFGLAAAFCVIPLQ 146
           TY++Y++IG +A +G+      IPLQ
Sbjct: 224 TYLMYREIGYSAIYGVLFLLLFIPLQ 249

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
UNIPROTKB|I3LJC6	210	I3LJC6 "Uncharacterized protei	0.941	0.685	0.326	8.3e-19
UNIPROTKB|F1RP56	501	Ssc.93318 "Uncharacterized pro	0.941	0.287	0.326	1.4e-18
UNIPROTKB|O15439	1325	ABCC4 "Multidrug resistance-as	0.941	0.108	0.312	1.7e-18
UNIPROTKB|F1RP58	479	F1RP58 "Uncharacterized protei	0.941	0.300	0.319	3.3e-18
FB|FBgn0032026	1355	CG7627 [Drosophila melanogaste	0.908	0.102	0.314	4.7e-18
UNIPROTKB|F1M3F0	366	F1M3F0 "Uncharacterized protei	0.941	0.393	0.292	5.6e-18
UNIPROTKB|F1P043	1309	ABCC4 "Uncharacterized protein	0.954	0.111	0.308	5.7e-18
UNIPROTKB|F1RP57	542	LOC100152536 "Uncharacterized	0.941	0.265	0.326	5.9e-18
UNIPROTKB|F1RP54	1294	LOC100620159 "Uncharacterized	0.941	0.111	0.326	2.5e-17
UNIPROTKB|F1MUC1	1304	ABCC4 "Uncharacterized protein	0.941	0.110	0.292	3.2e-17

UNIPROTKB|I3LJC6 I3LJC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 48/147 (32%), Positives = 78/147 (53%)

Query:     5 ITRPFVLGM---FLSYFKXXXXXXXXXXXXXXXXLVLITFLNSLLNAHYNTMSSHIGLRM 61
             I +P +LG    +L Y+                 L +     + L+  Y      +G+R+
Sbjct:    55 IVQPVLLGKIISYLEYYDPSDSAAFHEALAYAAGLSVCVLTWAFLHHLYFYHIQRVGMRL 114

Query:    62 RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
             R AVC +++RK L L   +TRET+ GQIVNL+SNDV+RFD VT+  HF+W  P+ +++VT
Sbjct:   115 RVAVCHMIYRKALCLSNSATRETSTGQIVNLLSNDVNRFDQVTMFLHFLWVGPLQAVVVT 174

Query:   122 YIIYKDIGNXXXXXXXXXXCVIPLQLC 148
              +++ ++G            ++ LQ C
Sbjct:   175 ALLWMEVGISCFAGMAVLILLLLLQTC 201

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RP56 Ssc.93318 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 48/147 (32%), Positives = 79/147 (53%)

Query:     5 ITRPFVLGM---FLSYFKXXXXXXXXXXXXXXXXLVLITFLNSLLNAHYNTMSSHIGLRM 61
             I +P +LG    +L Y+                 L       + L+  Y      +G+R+
Sbjct:   107 IVQPVLLGKIISYLEYYDPSDSAAFREALAYAAGLSACVLTWAFLHHLYFYHIQRVGMRL 166

Query:    62 RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
             R AVC +++RK L+L  ++TRET+ GQIVNL+SNDV+RFD VT+  HF+W  P+ +++VT
Sbjct:   167 RVAVCHMIYRKALRLSNLATRETSTGQIVNLLSNDVNRFDQVTMFLHFLWVGPLQTVVVT 226

Query:   122 YIIYKDIGNXXXXXXXXXXCVIPLQLC 148
              +++ ++G            ++ LQ C
Sbjct:   227 ALLWMEVGISCLAGMAVLILLLLLQSC 253

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

UNIPROTKB|O15439 ABCC4 "Multidrug resistance-associated protein 4" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 46/147 (31%), Positives = 81/147 (55%)

Query:     5 ITRPFVLGMFLSYFKXXXXXXXXXXXXXXXXLVLITFLNSLLNAHYNTMSSHI---GLRM 61
             + +P  LG  ++YF+                  ++TF   +L   ++    H+   G+R+
Sbjct:   107 VIQPIFLGKIINYFENYDPMDSVALNTAYAYATVLTFCTLILAILHHLYFYHVQCAGMRL 166

Query:    62 RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
             R A+C +++RK L+L  ++  +T  GQIVNL+SNDV++FD VTV  HF+W+ P+ ++ VT
Sbjct:   167 RVAMCHMIYRKALRLSNMAMGKTTTGQIVNLLSNDVNKFDQVTVFLHFLWAGPLQAIAVT 226

Query:   122 YIIYKDIGNXXXXXXXXXXCVIPLQLC 148
              +++ +IG            ++PLQ C
Sbjct:   227 ALLWMEIGISCLAGMAVLIILLPLQSC 253

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016404 "15-hydroxyprostaglandin dehydrogenase (NAD+) activity" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0016020 "membrane" evidence=IDA

GO:0031088 "platelet dense granule membrane" evidence=IDA;TAS

GO:0002576 "platelet degranulation" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1RP58 F1RP58 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 227 (85.0 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 47/147 (31%), Positives = 78/147 (53%)

Query:     5 ITRPFVLGM---FLSYFKXXXXXXXXXXXXXXXXLVLITFLNSLLNAHYNTMSSHIGLRM 61
             I +P +LG    +L Y+                 L +     + L+  Y      +G+R+
Sbjct:    85 IVQPVLLGKIISYLEYYDPSDSAAFHEALAYAAGLSICVLTWAFLHHLYFYYIQRVGMRL 144

Query:    62 RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
             R AVC +++ K L+L   +TRET+ GQIVNL+SNDV+RFD VT+  HF+W  P+ +++VT
Sbjct:   145 RVAVCHMIYHKALRLSNSATRETSTGQIVNLLSNDVNRFDQVTMFLHFLWVGPLQAVVVT 204

Query:   122 YIIYKDIGNXXXXXXXXXXCVIPLQLC 148
              +++ ++G            ++ LQ C
Sbjct:   205 ALLWMEVGISCLAGMAVLILLLLLQSC 231

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

FB|FBgn0032026 CG7627 [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 44/140 (31%), Positives = 75/140 (53%)

Query:     7 RPFVLGMFLSYFKXXXXXXXXXXXXXXXXLVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
             +P  L   ++Y+                 ++L + LN ++   Y   + H+GL+MR  +C
Sbjct:   108 QPIFLLKLIAYY-THGSESIESAYYYAAGVILCSALNVIIMHPYMLGTMHVGLKMRVGMC 166

Query:    67 SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
             S+++RK L+L   +  +T  G +VNL+SNDV R DL T+  H++W  P+ +L +TY++Y+
Sbjct:   167 SMIYRKALRLSKSALGDTTAGHVVNLMSNDVGRLDLATIFVHYLWVGPLETLFITYLMYR 226

Query:   127 DIGNXXXXXXXXXXCVIPLQ 146
             +IG             IPLQ
Sbjct:   227 EIGIAAVFGVAFMLLFIPLQ 246

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042060 "wound healing" evidence=IMP

UNIPROTKB|F1M3F0 F1M3F0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 221 (82.9 bits), Expect = 5.6e-18, P = 5.6e-18
 Identities = 43/147 (29%), Positives = 78/147 (53%)

Query:     5 ITRPFVLGMFLSYFKXXXXXXXXXXXXXXXXLVLITFLNSLLNAHYNTMSSHI---GLRM 61
             + +P  LG  + YF+                  +++    +L   ++    H+   G+R+
Sbjct:    86 VVQPIFLGKIIDYFEKYDSDDSAALHTAYGYAAVLSLCTLILAILHHLYFYHVQCAGMRI 145

Query:    62 RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
             R A+C +++RK L+L   +  +T  GQIVNL+SNDV++FD VT+  HF+W+ P+ ++ VT
Sbjct:   146 RVAMCHMIYRKALRLSNSAMGKTTTGQIVNLLSNDVNKFDQVTIFLHFLWAGPLQAIGVT 205

Query:   122 YIIYKDIGNXXXXXXXXXXCVIPLQLC 148
              +++ +IG            ++PLQ C
Sbjct:   206 ILLWVEIGISCLAGLAILVILLPLQSC 232

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

UNIPROTKB|F1P043 ABCC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 232 (86.7 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 46/149 (30%), Positives = 81/149 (54%)

Query:     3 LGITRPFVLGMFLSYFKXXXXXXXXXXXXX---XXXLVLITFLNSLLNAHYNTMSSHIGL 59
             L I +P  LG  ++YF+                   L + T + ++++  Y       G+
Sbjct:    84 LKIVQPIFLGKIITYFENYDASDEVALNVAYCYAAALSVCTLILAIMHHLYFYHVQRAGM 143

Query:    60 RMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLI 119
             ++R A+C +++RK L+L  V+  +T  GQIVNL+SNDV++FD VT+  HF+W+ PI ++ 
Sbjct:   144 KLRVAMCHMIYRKALRLSNVAMAKTTTGQIVNLLSNDVNKFDQVTIFLHFLWAGPIQAVA 203

Query:   120 VTYIIYKDIGNXXXXXXXXXXCVIPLQLC 148
             VT +++ +IG            ++P+Q C
Sbjct:   204 VTVLLWMEIGPSCLAGMAVLIILLPIQTC 232

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031088 "platelet dense granule membrane" evidence=IEA

UNIPROTKB|F1RP57 LOC100152536 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 5.9e-18, P = 5.9e-18
 Identities = 48/147 (32%), Positives = 79/147 (53%)

Query:     5 ITRPFVLGMFLSYFKX---XXXXXXXXXXXXXXXLVLITFLNSLLNAHYNTMSSHIGLRM 61
             + +P  LG  ++YF+                   L     L ++L+  Y       G+R+
Sbjct:   102 VVQPIFLGKIIAYFENYDPTDSVALYETYGYAGGLSTCVLLLAILHHLYFYHVQCAGMRL 161

Query:    62 RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
             R A+C +++RK L+L  ++  +T  GQIVNL+SNDV++FD VTV  HF+W+ P+ +LIVT
Sbjct:   162 RVAMCHMIYRKALRLSNLAMGKTTTGQIVNLLSNDVNKFDQVTVFLHFLWAGPLQALIVT 221

Query:   122 YIIYKDIGNXXXXXXXXXXCVIPLQLC 148
              +++ +IG            ++PLQ C
Sbjct:   222 ALLWMEIGISCLAGMAVLIILLPLQSC 248

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

UNIPROTKB|F1RP54 LOC100620159 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 48/147 (32%), Positives = 78/147 (53%)

Query:     5 ITRPFVLGM---FLSYFKXXXXXXXXXXXXXXXXLVLITFLNSLLNAHYNTMSSHIGLRM 61
             I +P +LG    +L Y+                 L +     + L+  Y      +G+R+
Sbjct:   111 IVQPVLLGKIISYLEYYDPSDSAAFHEALAYAAGLSVCVLTWAFLHHLYFYHIQRVGMRL 170

Query:    62 RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
             R AVC +++RK L L  ++TRET+ GQIVNL+SNDV+RFD VT+  HF+W  P+ ++ VT
Sbjct:   171 RVAVCHMIYRKALCLSNLATRETSTGQIVNLLSNDVNRFDQVTMLLHFLWVGPLQAVAVT 230

Query:   122 YIIYKDIGNXXXXXXXXXXCVIPLQLC 148
              +++ ++G            ++ LQ C
Sbjct:   231 ALLWMEVGISCLAGMAVLILLLLLQTC 257

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MUC1 ABCC4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 43/147 (29%), Positives = 80/147 (54%)

Query:     5 ITRPFVLGMFLSYFKXXXXXXXXXXXXXXXXLVLITFLNSLLNAHYNTMSSHI---GLRM 61
             + +P +LG  + YF+                  +++    +L   ++    H+   G+R+
Sbjct:    86 VVQPIILGKIIGYFENYDPSDSAALYEAHGYAGVLSACTLVLAILHHLYFYHVQCAGMRL 145

Query:    62 RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
             R A+C +++RK L+L   +  +T  GQIVNL+SNDV++FD VT+  HF+W+ P+ +++VT
Sbjct:   146 RVAMCHMIYRKALRLSNSAMGKTTTGQIVNLLSNDVNKFDQVTIFLHFLWAGPLQAIVVT 205

Query:   122 YIIYKDIGNXXXXXXXXXXCVIPLQLC 148
              +++ +IG            ++PLQ C
Sbjct:   206 ALLWMEIGISCLAGMAVLIILLPLQSC 232

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	153
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-14
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	1e-12
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	1e-11
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	3e-11
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	7e-11
pfam00664	274	pfam00664, ABC_membrane, ABC transporter transmemb	1e-08
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	5e-04

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 17/154 (11%)

Query: 2   VLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLN---AH-YNTMSSHI 57
           V  +T P +L  F+ +    + T        G  LVL  FL  L+     H +  +S   
Sbjct: 258 VCTLTLPVLLKYFVKFLDADNATWGR-----GLGLVLTLFLTQLIQSVCLHRFYYISIRC 312

Query: 58  GLRMRAAVCSLVFRKCLKLDMVSTR-----ETAPGQIVNLVSNDVSRFDLVTVTSHFMWS 112
           GL+ R+A+ +L+F KC     +S++     +   G+I+N++S DV R +       ++WS
Sbjct: 313 GLQYRSALNALIFEKCF---TISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWS 369

Query: 113 SPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQ 146
           SP++ L+   ++ + +G  A   +A     +PL 
Sbjct: 370 SPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLN 403

Length = 1560

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 63.8 bits (155), Expect = 1e-12
 Identities = 38/142 (26%), Positives = 75/142 (52%)

Query: 7   RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
           +P +LG  ++ +   +    E A      L L+  + +LL         H+G++MR A+ 
Sbjct: 99  QPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALF 158

Query: 67  SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYK 126
           SL+++K LKL      + + GQ+V+L+SN++++FD     +HF+W +P+  +++  +I++
Sbjct: 159 SLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWE 218

Query: 127 DIGNAAFFGLAAAFCVIPLQLC 148
            +    F GL     +   Q C
Sbjct: 219 LLEVNGFCGLGFLILLALFQAC 240

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 27/105 (25%), Positives = 54/105 (51%)

Query: 42  LNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFD 101
              L  + Y      +G R+R+ + + +F K L+L   + +  A G++ N+++ D +   
Sbjct: 353 FGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQ 412

Query: 102 LVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQ 146
            +    H +WS+P   ++   ++Y+ +G A+ FG    F +IPLQ
Sbjct: 413 QIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQ 457

Length = 1495

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 41  FLNSLLNAHY--NTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVS 98
            L  L  A Y  N M   +G R+R+ + + VFRK L+L     ++   G+I NL++ D  
Sbjct: 352 VLGVLCEAQYFQNVM--RVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAE 409

Query: 99  RFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQ 146
               +    H +WS+P   +I   ++Y+ +G A+  G      + P+Q
Sbjct: 410 ALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQ 457

Length = 1622

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 58.8 bits (142), Expect = 7e-11
 Identities = 34/113 (30%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 34  GALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLV 93
           G L +   L +L+   Y  +    G+R++ AV   V+RK L +   + + +  G+IVNL+
Sbjct: 362 GLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLM 421

Query: 94  SNDVSRF-DLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPL 145
           S D  RF DL T  +  +WS+P+  ++  Y ++ ++G +   G+A    ++PL
Sbjct: 422 SVDAQRFMDLATYIN-MIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPL 473

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 1/147 (0%)

Query: 2   VLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRM 61
              +  P +LG FL      +     +       L+ +  L  LL      +   +G R+
Sbjct: 13  ATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGSFYLGERLGQRI 72

Query: 62  RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
           R  +   + R+ L L M      + G++ + ++NDVS+          ++   + +++  
Sbjct: 73  RKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGG 132

Query: 122 YIIYKDIGNAAFFG-LAAAFCVIPLQL 147
           +I+    G       LA    +I L  
Sbjct: 133 FIVMFYYGWKLTLVLLAILPLLILLSA 159

This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 2   VLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRM 61
           +L +  P ++G  +           E   +     +L   L +L +   + +   I   +
Sbjct: 28  LLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87

Query: 62  RAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT 121
           R      +F K L+L +    +   G +++ ++NDV     +  T   +  + I+ LI +
Sbjct: 88  R----RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGS 143

Query: 122 YII 124
            ++
Sbjct: 144 LVL 146

Length = 567

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
KOG0054|consensus	1381		99.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.84
PTZ00243	1560	ABC transporter; Provisional	99.83
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.8
PLN03130	1622	ABC transporter C family member; Provisional	99.74
PLN03232	1495	ABC transporter C family member; Provisional	99.74
PF00664	275	ABC_membrane: ABC transporter transmembrane region	99.7
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.6
KOG0058|consensus	716		99.57
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.55
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.53
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.52
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.5
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.47
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.46
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.46
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.45
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.45
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.44
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.43
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.42
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.41
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.41
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.38
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.37
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.37
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.37
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.33
COG4988	559	CydD ABC-type transport system involved in cytochr	99.3
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.29
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.29
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.26
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.24
PLN03130	1622	ABC transporter C family member; Provisional	99.2
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.19
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.12
PLN03232	1495	ABC transporter C family member; Provisional	99.1
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.99
PTZ00243	1560	ABC transporter; Provisional	98.99
KOG0055|consensus	1228		98.98
COG4987	573	CydC ABC-type transport system involved in cytochr	98.98
KOG0054|consensus	1381		98.89
KOG0057|consensus	591		98.52
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.39
KOG0055|consensus	1228		98.38
PF13748	237	ABC_membrane_3: ABC transporter transmembrane regi	98.03
PF06472	281	ABC_membrane_2: ABC transporter transmembrane regi	97.89
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.67
KOG0056|consensus	790		96.6
PRK12369	326	putative transporter; Reviewed	96.26
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	95.47
PRK11098	409	microcin B17 transporter; Reviewed	94.81
KOG0060|consensus	659		94.09
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	93.19
COG4178	604	ABC-type uncharacterized transport system, permeas	90.26
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	82.9
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	82.75
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	81.23
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	80.16

>KOG0054|consensus

Probab=99.89  E-value=5.8e-22  Score=163.40  Aligned_cols=148  Identities=30%  Similarity=0.518  Sum_probs=139.0

Q ss_pred             hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504           4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE   83 (153)
Q Consensus         4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~   83 (153)
                      ...+|.+++.+++++.++ +.+...++.++.+++++.++++++...+.+...+.+.+++..+...+|+|.++++....++
T Consensus       217 ~~~~P~lL~~li~~~~~~-~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~  295 (1381)
T KOG0054|consen  217 GFVGPLLLKKLILFFSEK-RLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGE  295 (1381)
T ss_pred             ccccHHHHHHHHHHhcCC-CcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccC
Confidence            578999999999998653 3345567889999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504          84 TAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT  152 (153)
Q Consensus        84 ~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~  152 (153)
                      +++|+++|+|++|++++.+...++|.+|..|++++++++++|..+|+++++|++++++++|+|..++|+
T Consensus       296 ~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~  364 (1381)
T KOG0054|consen  296 TTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKK  364 (1381)
T ss_pred             CCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999875

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.84  E-value=3e-19  Score=151.44  Aligned_cols=150  Identities=25%  Similarity=0.429  Sum_probs=133.4

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+++|++++.+++++...+......++.++.+++++.++..++.+.+.|...+.+.+++..++..+|+|.++++...++
T Consensus        95 ~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~  174 (1490)
T TIGR01271        95 TKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLD  174 (1490)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhc
Confidence            56789999999999884311112234566777788888889999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT  152 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~  152 (153)
                      +.++|+++|++++|++++++....++.+|..|+++++++++++..+||++++|+.++++++|++..++|+
T Consensus       175 ~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~  244 (1490)
T TIGR01271       175 KISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK  244 (1490)
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888999999999999999999999999999999999999999998875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=99.83  E-value=1e-18  Score=148.51  Aligned_cols=150  Identities=23%  Similarity=0.433  Sum_probs=132.7

Q ss_pred             chhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccc
Q psy1504           2 VLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVST   81 (153)
Q Consensus         2 ~~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~   81 (153)
                      ++.+++|++++.+++++.+ ++.....++.++.+++++.++.+++.+.+.+...+.+.+++..++..+|+|+++++....
T Consensus       258 ~~~l~~P~ll~~~v~~l~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~  336 (1560)
T PTZ00243        258 VCTLTLPVLLKYFVKFLDA-DNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSL  336 (1560)
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence            3567899999999998753 222333355666677788889999999999999999999999999999999999998877


Q ss_pred             c--CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504          82 R--ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT  152 (153)
Q Consensus        82 ~--~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~  152 (153)
                      +  +.++|+++|++++|+++++++...++.+|..|+++++++++++..+||++++|++++++++|++..++|+
T Consensus       337 ~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~  409 (1560)
T PTZ00243        337 AQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKH  409 (1560)
T ss_pred             CCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6  6789999999999999999999889999999999999999999999999999999999999999998874

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.80  E-value=5e-18  Score=144.46  Aligned_cols=149  Identities=22%  Similarity=0.442  Sum_probs=131.2

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+++|.+++.+++++.+.+ .+...++.++.+++++.++.+++..++.+...+.+.+++..++..+|+|+++++..+++
T Consensus       332 ~~~~~P~ll~~li~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~  410 (1522)
T TIGR00957       332 MMFIGPQILSLLIRFVNDPM-APDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARK  410 (1522)
T ss_pred             HHHHHHHHHHHHHHHhcCCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcC
Confidence            56789999999999875422 22233556666777778888888888888899999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT  152 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~  152 (153)
                      +.++|+++|++++|++++.+....++.+|..|+++++++++++..+|+++++|+.++++++|++..++|+
T Consensus       411 ~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~  480 (1522)
T TIGR00957       411 SSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMK  480 (1522)
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988889999999999999999999999999999999999999999887654

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.74  E-value=2.5e-16  Score=134.52  Aligned_cols=148  Identities=22%  Similarity=0.413  Sum_probs=122.2

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+++|.+++.+++++.+++ .. ..++.++..+++..++...+...+.+...+.+.+++.+++..+|+|.++++...++
T Consensus       316 ~~~~~P~ll~~li~~v~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~  393 (1622)
T PLN03130        316 SQFVGPLLLNLLLESMQNGE-PA-WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRK  393 (1622)
T ss_pred             HHHHHHHHHHHHHHHHhcCC-cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcC
Confidence            45788999999999875322 11 22344444444444555555555666677999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT  152 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~  152 (153)
                      +.++|+++|++++|++++++....++.+|..|+++++++++++..+|+++++|++++++..|++..++|+
T Consensus       394 ~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~  463 (1622)
T PLN03130        394 KFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISK  463 (1622)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999889999999999999999999999999999998888999998877654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.74  E-value=2.5e-16  Score=134.08  Aligned_cols=148  Identities=22%  Similarity=0.416  Sum_probs=125.7

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+++|.+++.+++++.++ +.. ..++.++.++++..+++.++...+.+...+.+.+++.+++..+|+|.++++...++
T Consensus       316 ~~~~~P~ll~~li~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~  393 (1495)
T PLN03232        316 SQFVGPVILSHLLQSMQEG-DPA-WVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARK  393 (1495)
T ss_pred             HHHHHHHHHHHHHHHHhcC-Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcC
Confidence            4567899999999987542 212 23445555666667777777777777778999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT  152 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~  152 (153)
                      +.++|+++|++++|++++++....++.+|..|++++++++++++.+|+++++++++++++.|++..++|+
T Consensus       394 ~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~  463 (1495)
T PLN03232        394 NFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRK  463 (1495)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998788999999999999999999999999999998888888888776653

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.70  E-value=4.1e-15  Score=105.11  Aligned_cols=149  Identities=17%  Similarity=0.218  Sum_probs=109.4

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +....|.+.+.++|.+.+++.......+.+...+++...+.........+...+.+.+.+.++|.++++|.++.|..+++
T Consensus        14 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   93 (275)
T PF00664_consen   14 LSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFD   93 (275)
T ss_dssp             HHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            34568999999999865422221233344444444555666677777777788999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTY  151 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k  151 (153)
                      ++++||++|++++|++++++... .+..+.......+++++.++..-.+.+++.+...++..++...+.|
T Consensus        94 ~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~  163 (275)
T PF00664_consen   94 KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSK  163 (275)
T ss_dssp             HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhcc
Confidence            99999999999999999999985 5677777777777777777655444555555555555555555544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.60  E-value=2e-13  Score=107.64  Aligned_cols=123  Identities=17%  Similarity=0.185  Sum_probs=97.3

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|+++++++|.+...+ ......+.+...++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus        37 ~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~  115 (588)
T PRK11174         37 LLIAQAWLLATILQALIIEN-IPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQ  115 (588)
T ss_pred             HHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhc
Confidence            34578999999998753211 11122334444566677788889999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK  126 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~  126 (153)
                      +.++|+++|++++|++++++.+ ..++.++...+..+++++.+++
T Consensus       116 ~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (588)
T PRK11174        116 GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP  160 (588)
T ss_pred             cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998 4678877777766666665554

>KOG0058|consensus

Probab=99.57  E-value=2.6e-13  Score=105.94  Aligned_cols=134  Identities=13%  Similarity=0.162  Sum_probs=110.9

Q ss_pred             hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504           4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE   83 (153)
Q Consensus         4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~   83 (153)
                      +...|..+++++|.+.. +.+.....-..+..+.++++.++++.....+.....+.++..++|.++|+++++....+||+
T Consensus       163 ~~~iP~~~G~~id~~~~-~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~  241 (716)
T KOG0058|consen  163 NMFIPYYLGKLIDTISE-GDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE  241 (716)
T ss_pred             cchhhHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence            46789999999998754 11122222245557778889999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH---HHhHHHHHHHHH
Q psy1504          84 TAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK---DIGNAAFFGLAA  138 (153)
Q Consensus        84 ~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~~  138 (153)
                      +++||++||+++|+..+.+.+ ..+...+.+.++.+++..+|+.   ++....++.+|.
T Consensus       242 nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~  300 (716)
T KOG0058|consen  242 NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPI  300 (716)
T ss_pred             CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcH
Confidence            999999999999999999999 4788889999999999888874   555555555553

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.55  E-value=1.4e-12  Score=102.59  Aligned_cols=127  Identities=16%  Similarity=0.172  Sum_probs=96.1

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|.+++.++|.+..+. ......+.++..++++.++..++.+...+...+.+.+...++|..+|+|+++.|..+++
T Consensus        10 ~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~   88 (569)
T PRK10789         10 LQLIPPKVVGIIVDGVTEQH-MTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL   88 (569)
T ss_pred             HHHHHHHHHHHHHHHhccCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence            45678999999998764311 11222334454555666778888888888889999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGN  130 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~  130 (153)
                      ++++|++++++++|++.+++... .+..++..++..++++++++..++|
T Consensus        89 ~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (569)
T PRK10789         89 RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISW  137 (569)
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999997763 5667766666665555555433333

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.53  E-value=2.4e-12  Score=100.38  Aligned_cols=134  Identities=13%  Similarity=0.059  Sum_probs=97.3

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|.+++.++|.....+  ...........++++.+...++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus        28 ~~~~~~~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~  105 (529)
T TIGR02868        28 SAVALLGVSAWLISRAAEMP--PVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRR  105 (529)
T ss_pred             HHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc
Confidence            34567888888888654211  1111111122233455667888888889999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHH---HHhHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYK---DIGNAAFFGLAA  138 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~~  138 (153)
                      +.++|++++++++|++.+++.+. .+..++...+..+++++++++   .++...++++++
T Consensus       106 ~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~  165 (529)
T TIGR02868       106 RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL  165 (529)
T ss_pred             cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999884 567777776666666665554   444444444443

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.52  E-value=3.6e-12  Score=99.45  Aligned_cols=134  Identities=16%  Similarity=0.126  Sum_probs=102.3

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|++.++++|.+...+ ........+...+++..++..++.+...+...+.+.+...++|..+|+|++++|..+++
T Consensus        18 ~~~~~~~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~   96 (529)
T TIGR02857        18 LIIAQAWLLARVIDGLISAG-EPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQ   96 (529)
T ss_pred             HHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhc
Confidence            45678999999999763111 12223334445566677788889999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHH---HHHhHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIY---KDIGNAAFFGLA  137 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~---~~lg~~~l~~~~  137 (153)
                      +.++|++++++++|++++++.+. .+..++...+..++++++++   +.++...+++++
T Consensus        97 ~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~  155 (529)
T TIGR02857        97 GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAP  155 (529)
T ss_pred             cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999884 57777777766666666555   344444444443

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.50  E-value=5.9e-12  Score=99.12  Aligned_cols=135  Identities=16%  Similarity=0.065  Sum_probs=99.5

Q ss_pred             hhchhHHHHHHHhhhcccCccc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTT-A-TETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVS   80 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~   80 (153)
                      +.+..|.+++.++|.....+.. . ..........+.++.++..++.+...+..++.+.++..++|..+|+|++++|..+
T Consensus        31 ~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~  110 (574)
T PRK11160         31 ASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAG  110 (574)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHh
Confidence            4567888888888864211110 0 0111122334445667788899999999999999999999999999999999999


Q ss_pred             ccCCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH---HHhHHHHHHHH
Q psy1504          81 TRETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK---DIGNAAFFGLA  137 (153)
Q Consensus        81 ~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~  137 (153)
                      +++.++|++++++++|++.+++++ ..++.++...+..++++++|++   .++...+++++
T Consensus       111 ~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~  171 (574)
T PRK11160        111 LARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILL  171 (574)
T ss_pred             hccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998 4677777777777666666654   44444434443

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.47  E-value=1.5e-11  Score=98.80  Aligned_cols=139  Identities=15%  Similarity=0.135  Sum_probs=101.2

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.++.|.+++.++|.+...+  +....+.+..++++..++..++.+...+...+.+.++..++|..+|+|++++|..+ +
T Consensus       162 ~~l~~p~~~~~iiD~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~  238 (694)
T TIGR03375       162 LALASPLFVMNVYDRVVPNQ--AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-R  238 (694)
T ss_pred             HHHHHHHHHHHHHHHhhhcC--cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-C
Confidence            45678999999999764322  22223334445555667788889999999999999999999999999999999998 7


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPL  145 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~  145 (153)
                      +.++|++++++ +|++.+++++. .+...+...+..++++++|++.-++.+++.+..+++...+
T Consensus       239 ~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~  301 (694)
T TIGR03375       239 PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLP  301 (694)
T ss_pred             CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            88999999998 89999999884 5555656655566666666655455555444433333333

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.46  E-value=1.5e-11  Score=98.99  Aligned_cols=129  Identities=13%  Similarity=0.088  Sum_probs=97.9

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|...++++|.+..+.+  ..........+.+..++..++.+...+.....+.++..++|..+|+|+++.+..+++
T Consensus       176 ~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~  253 (711)
T TIGR00958       176 GEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD  253 (711)
T ss_pred             HHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence            445789999999998753221  111222223344555667777777788888899999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAF  133 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l  133 (153)
                      ++++|+++|++++|++.+++.+ ..+..++...+.+++++++++..-++.++
T Consensus       254 ~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l  305 (711)
T TIGR00958       254 ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTM  305 (711)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999998 46777888888887777777654433333

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.46  E-value=1.7e-11  Score=98.41  Aligned_cols=134  Identities=16%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|...+.++|.+....  .....+.++..++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus       151 ~~l~~p~~~~~iid~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~  228 (686)
T TIGR03797       151 LGMLVPIATGILIGTAIPDA--DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFR  228 (686)
T ss_pred             HHHHHHHHHHHHHHHhhhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHC
Confidence            45678999999999775311  2223334455566677778888999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAA  139 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~  139 (153)
                      +.++|+++++++ |++.+++.+. .+...+.+.+..++++++++..-++.+++.+.+.
T Consensus       229 ~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~  285 (686)
T TIGR03797       229 QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA  285 (686)
T ss_pred             CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999997 8999999884 4555555555555666666655444444444433

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.45  E-value=2e-11  Score=98.01  Aligned_cols=127  Identities=11%  Similarity=0.184  Sum_probs=95.5

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.++.|.+++.++|.+....  +......++..++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus       154 l~l~~p~~~~~iid~v~~~~--~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~  231 (694)
T TIGR01846       154 FALVTPLLFQVVIDKVLVHR--GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFE  231 (694)
T ss_pred             HHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcC
Confidence            45678999999998774311  2223334444556666778888999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAA  132 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~  132 (153)
                      +.++|++++++ +|++.+++++. .+...+...+..++.+++++..-++.+
T Consensus       232 ~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  281 (694)
T TIGR01846       232 SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT  281 (694)
T ss_pred             CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 69999999874 555655555444444555554433333

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.45  E-value=1.5e-11  Score=98.99  Aligned_cols=133  Identities=11%  Similarity=0.084  Sum_probs=102.2

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.++.|.+.+.++|.+...+  .....+.+..+++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus       169 ~~l~~p~~~~~iid~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~  246 (710)
T TIGR03796       169 PGLVIPAFSQIFVDEILVQG--RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA  246 (710)
T ss_pred             HHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence            45678999999998764322  2222334444555666778888889999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAA  138 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~  138 (153)
                      +.++|++++++++| +.+++++. .+...+.+.+.++++++++++.-++.+++.+..
T Consensus       247 ~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~  302 (710)
T TIGR03796       247 QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAF  302 (710)
T ss_pred             CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998 68998874 567777777777777777776544444444433

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.44  E-value=2.5e-11  Score=97.71  Aligned_cols=124  Identities=15%  Similarity=0.166  Sum_probs=93.7

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.++.|..++.++|.+...+  .....+.++..+++..++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus       171 ~~l~~p~~~~~iiD~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~  248 (708)
T TIGR01193       171 ISIAGSYYLQKIIDTYIPHK--MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFS  248 (708)
T ss_pred             HHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence            45678999999998764311  2222333444455666778888888899999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHh
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIG  129 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg  129 (153)
                      +.++|+++++++ |.+.++++.. .....+...+..+++++++++.-+
T Consensus       249 ~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  295 (708)
T TIGR01193       249 TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNM  295 (708)
T ss_pred             CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            999999999998 9999999874 455555555555555555554333

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.43  E-value=3.2e-11  Score=96.21  Aligned_cols=133  Identities=17%  Similarity=0.269  Sum_probs=108.2

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      ++++.|.+.+.++|.+...+  +.........++++..+.+.++.....+...+.+.++..++...+|+|++++|..||+
T Consensus       169 ~~l~~p~~~q~viD~Vl~~~--~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~  246 (709)
T COG2274         169 LALATPLFSQIVIDKVLPDA--SRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE  246 (709)
T ss_pred             HHHHHHHHHHHHHHhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHcc
Confidence            56789999999999885422  2333445666777888899999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAA  138 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~  138 (153)
                      +.++||+++|+. |.+++.++.. .....+.+.+..++..++|++.-++-+++++..
T Consensus       247 ~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~  302 (709)
T COG2274         247 KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAA  302 (709)
T ss_pred             CCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999986 5999999995 577777777777777777776655555544443

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.42  E-value=5e-11  Score=94.21  Aligned_cols=124  Identities=12%  Similarity=0.151  Sum_probs=93.2

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|..+++++|.+.............++..+++..++..++.+...+...+.+.+...++|..+|+|+++.|..+++
T Consensus        38 ~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~  117 (592)
T PRK10790         38 AEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFD  117 (592)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence            34567888888988764211111111122333445556677788888899999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK  126 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~  126 (153)
                      +.++|++++++++|++.+++.+ ..+..++.....+++++++++.
T Consensus       118 ~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (592)
T PRK10790        118 TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFS  162 (592)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988 4567776666666666555554

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.41  E-value=5.3e-11  Score=93.95  Aligned_cols=119  Identities=7%  Similarity=0.092  Sum_probs=86.5

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|++.++++|.+..++  ..   .......++..+...+..+...+...+...+++.++|..+|+|++++|..+++
T Consensus        34 ~~~~~p~~~~~iid~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~  108 (585)
T TIGR01192        34 ITIAEPILFGRIIDAISSKS--DV---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQ  108 (585)
T ss_pred             HHHHHHHHHHHHHHHHhccc--cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence            44678999999998764311  11   11111222334455566666677777888888889999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYK  126 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~  126 (153)
                      ++++|++++++++|++.+++.+. .+...+..++.+++++++++.
T Consensus       109 ~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (585)
T TIGR01192       109 QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA  153 (585)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998874 566666666666655555543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.41  E-value=3.2e-11  Score=94.66  Aligned_cols=89  Identities=10%  Similarity=0.111  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHH
Q psy1504          39 ITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISL  118 (153)
Q Consensus        39 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii  118 (153)
                      ..++..++.+...+..++.+.++..++|..+|+|++++|..+++++++|++++++++|++.++++...+..++...+..+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~  141 (555)
T TIGR01194        62 LCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFF  141 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677888888999999999999999999999999999999999999999999999999998855666666666666


Q ss_pred             HHHHHHHHH
Q psy1504         119 IVTYIIYKD  127 (153)
Q Consensus       119 ~~~~~l~~~  127 (153)
                      ++++++++.
T Consensus       142 ~~~~~l~~~  150 (555)
T TIGR01194       142 FCIAYLAYL  150 (555)
T ss_pred             HHHHHHHHH
Confidence            666655543

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.38  E-value=1.2e-10  Score=91.78  Aligned_cols=133  Identities=8%  Similarity=-0.004  Sum_probs=101.1

Q ss_pred             hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504           4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE   83 (153)
Q Consensus         4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~   83 (153)
                      ....|...+.+++.....+  ........+..+++..++..++.+...+...+.+.++...+|..+|+|+.+.|..++++
T Consensus        30 ~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~  107 (571)
T TIGR02203        30 ESTLAALLKPLLDDGFGGR--DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR  107 (571)
T ss_pred             HHHHHHHHHHHHhhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC
Confidence            3456777777777543211  11222233444566777888888999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504          84 TAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAA  138 (153)
Q Consensus        84 ~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~  138 (153)
                      .+.|++.+++++|++++++.+ ..+..++...+.++++++++++.-++.+++.++.
T Consensus       108 ~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~  163 (571)
T TIGR02203       108 QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVM  163 (571)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999999988 4677778888888888877776544444444333

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.37  E-value=1.5e-10  Score=91.28  Aligned_cols=123  Identities=11%  Similarity=0.165  Sum_probs=92.9

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|.+.+.++|.+....  +......+....+++.++..+..+...+...+.+.++..++|..+|+|+.+.|..+++
T Consensus        33 ~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~  110 (576)
T TIGR02204        33 ATLSLPYAVRLMIDHGFSKD--SSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFD  110 (576)
T ss_pred             HHHHHHHHHHHHhHhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence            34567888888888743211  1122223333444555666777778888899999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKD  127 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~  127 (153)
                      +.+.|++++++++|++++++.. ..+..++.+.+.+++++++++..
T Consensus       111 ~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (576)
T TIGR02204       111 KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFIT  156 (576)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987 45677777777777666666543

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.37  E-value=1.5e-10  Score=91.43  Aligned_cols=131  Identities=5%  Similarity=-0.041  Sum_probs=97.6

Q ss_pred             chhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCC
Q psy1504           5 ITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRET   84 (153)
Q Consensus         5 ~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~   84 (153)
                      ...|.+++.++|.... ++ ...........++++.++..++.+...+...+.+.+...++|..+|+|+.++|..++++.
T Consensus        42 ~~~~~~~~~~id~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~  119 (582)
T PRK11176         42 TFMLSLLKPLLDDGFG-KA-DRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ  119 (582)
T ss_pred             HHHHHHHHHHHHHHhc-cC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC
Confidence            4567777777776542 11 111112222334446667778888888888899999999999999999999999999999


Q ss_pred             ChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1504          85 APGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLA  137 (153)
Q Consensus        85 ~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~  137 (153)
                      +.|++++++++|++.+++.. ..+..++..++.++++++++++.-++.+++.+.
T Consensus       120 ~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~  173 (582)
T PRK11176        120 STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIV  173 (582)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987 567888888888888887777654444444433

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.37  E-value=8e-11  Score=92.31  Aligned_cols=96  Identities=8%  Similarity=0.022  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHH
Q psy1504          44 SLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYI  123 (153)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~  123 (153)
                      .+..+...+...+.+.++..++|..+|+|++++|..+++++++|+++|++++|++.++..+..++.++.+.+..++++++
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~  141 (547)
T PRK10522         62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAY  141 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888889999999999999999999999999999999999999999999998765577778888888888877


Q ss_pred             HHHHHhHHHHHHHHHH
Q psy1504         124 IYKDIGNAAFFGLAAA  139 (153)
Q Consensus       124 l~~~lg~~~l~~~~~~  139 (153)
                      +++.-++.+++.+..+
T Consensus       142 l~~~~~~l~li~l~~~  157 (547)
T PRK10522        142 LAWLSPKMLLVTAIWM  157 (547)
T ss_pred             HHHHhHHHHHHHHHHH
Confidence            7765444444444433

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.33  E-value=7.8e-11  Score=94.09  Aligned_cols=148  Identities=12%  Similarity=0.022  Sum_probs=107.0

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATET-AAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVST   81 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~   81 (153)
                      +++..|.+.+.++|.+.+++...... .+.+++.+++..++..+..+...+...+.+.++..++++..|+|..+.+..++
T Consensus       111 ~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~  190 (659)
T TIGR00954       111 LSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNL  190 (659)
T ss_pred             HHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccC
Confidence            45667888888888775322111111 22344455566777888888888888899999999999999999999999999


Q ss_pred             cCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhhhc
Q psy1504          82 RETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFG-LAAAFCVIPLQLCSTY  151 (153)
Q Consensus        82 ~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~-~~~~~~~~~~~~~i~k  151 (153)
                      ++ ++|++++++++|++.+++.+. .+..++..++.++++.+.++..++|...+. +...++...+...+.+
T Consensus       191 d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~  261 (659)
T TIGR00954       191 DS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRP  261 (659)
T ss_pred             CC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHcc
Confidence            87 889999999999999999985 578888888888888888887677644333 2233333444344433

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=7.5e-10  Score=85.15  Aligned_cols=145  Identities=13%  Similarity=0.103  Sum_probs=117.5

Q ss_pred             hhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCC
Q psy1504           6 TRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETA   85 (153)
Q Consensus         6 ~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~   85 (153)
                      .+..++...++.+..+ +. ....+.+...++++.+++++..........+.+.+++.++|+.+++|+.++++.+.++.+
T Consensus        18 ~qa~llA~~l~~l~~~-~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~   95 (559)
T COG4988          18 AQAALLADILTKLIEG-QL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKP   95 (559)
T ss_pred             HHHHHHHHHHHHHHhc-cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCC
Confidence            4455555566555432 11 233445666788889999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhHhHHHHHHH-HhHHHhH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504          86 PGQIVNLVSNDVSRFDLVTV-TSHFMWS---SPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT  152 (153)
Q Consensus        86 ~G~i~~~~t~D~~~i~~~~~-~~~~~~~---~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~  152 (153)
                      +|+..+.++..+|+++.++. ++|++..   .|+.++++++...|.-|...+++.|.+++++.+-...+|+
T Consensus        96 ~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~  166 (559)
T COG4988          96 AGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKD  166 (559)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999994 7888764   4788888888888888888888888888887766555543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.29  E-value=5.7e-10  Score=95.53  Aligned_cols=123  Identities=11%  Similarity=0.072  Sum_probs=94.4

Q ss_pred             hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504           4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE   83 (153)
Q Consensus         4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~   83 (153)
                      ..+.|++.+.+++.+..... .......++..++++.++..++.+...|...+.+.++..++|..+|+|+++.+..+|++
T Consensus       841 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~  919 (1466)
T PTZ00265        841 YPVFALLYAKYVSTLFDFAN-LEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQ  919 (1466)
T ss_pred             HHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC
Confidence            45677888888875432111 11123345556666677788888889999999999999999999999999999999985


Q ss_pred             --CChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHH
Q psy1504          84 --TAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKD  127 (153)
Q Consensus        84 --~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~  127 (153)
                        +++|++++++++|++.+++.. ..+..++..++.++++++++++.
T Consensus       920 ~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~  966 (1466)
T PTZ00265        920 DKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF  966 (1466)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              889999999999999999987 45677777777777766665543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.29  E-value=5.4e-10  Score=95.69  Aligned_cols=127  Identities=7%  Similarity=-0.045  Sum_probs=98.4

Q ss_pred             chhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCC
Q psy1504           5 ITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRET   84 (153)
Q Consensus         5 ~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~   84 (153)
                      ...|.+.+.++|.+..++  ..   ..++..++++.++..++.+...+.+.+.+.++..++|..+|+|+++++..++++.
T Consensus        77 p~~~~i~g~iid~~~~~~--~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~  151 (1466)
T PTZ00265         77 PFFVSVFGVIMKNMNLGE--NV---NDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN  151 (1466)
T ss_pred             HHHHHHHHHHHHHHhccc--hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC
Confidence            456777888888653211  11   1223345566677888899999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1504          85 APGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGL  136 (153)
Q Consensus        85 ~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~  136 (153)
                      +.|++.+++++|++.+++.+ ..+..++..++.+++++++++..-+..+++.+
T Consensus       152 ~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l  204 (1466)
T PTZ00265        152 PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT  204 (1466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999998 46788888888888888777654333343333

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.26  E-value=1.4e-09  Score=85.97  Aligned_cols=119  Identities=9%  Similarity=0.078  Sum_probs=82.1

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|++++.++|.+...  ..   .......+++..+...+..+...+...+...+.+..++..+|+|+.++|..+++
T Consensus        34 ~~~~~~~~~~~iid~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  108 (588)
T PRK13657         34 ATFAEPILFGRIIDAISGK--GD---IFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHS  108 (588)
T ss_pred             HHHHHHHHHHHHHHHhccc--cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHC
Confidence            4567888888888876531  11   111122222333444455555666667777888888889999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK  126 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~  126 (153)
                      +.+.|++++++++|++++.+.. ..+.......+..++.++++++
T Consensus       109 ~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (588)
T PRK13657        109 QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF  153 (588)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998876 3455655555544444444443

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.24  E-value=2.1e-09  Score=84.74  Aligned_cols=131  Identities=17%  Similarity=0.278  Sum_probs=96.0

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +....|.+++.++|.+..    .......+...+++..++..++.+...+...+.+.+...++|..+|+|++++|..+++
T Consensus        29 ~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~  104 (567)
T COG1132          29 LSLLLPLLIGRIIDALLA----DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD  104 (567)
T ss_pred             HHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhC
Confidence            456778888888887641    1122233334455555677788888888888888999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHHHh-HHHhHHHHHHHHHHHHHHH---HHhHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTVTS-HFMWSSPIISLIVTYIIYK---DIGNAAFFGLA  137 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~~~-~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~  137 (153)
                      ++++|++++++++|++.+++.+... ..+...++..++..++++.   .++...+++.+
T Consensus       105 ~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~  163 (567)
T COG1132         105 KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILP  163 (567)
T ss_pred             cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9999999999999999999998643 3344456666666555553   45555555444

>PLN03130 ABC transporter C family member; Provisional

Probab=99.20  E-value=3e-09  Score=92.01  Aligned_cols=105  Identities=12%  Similarity=0.047  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhH
Q psy1504          34 GALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWS  112 (153)
Q Consensus        34 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~  112 (153)
                      ..++++.++..++.+...+...+.+.+...++|..+++|+++.|+++|+++++|+++||+++|++.+.+... .+..++.
T Consensus       957 ~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~ 1036 (1622)
T PLN03130        957 LIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLG 1036 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666777777778888899999999999999999999999999999999999999999999999874 5677777


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504         113 SPIISLIVTYIIYKDIGNAAFFGLAA  138 (153)
Q Consensus       113 ~~i~ii~~~~~l~~~lg~~~l~~~~~  138 (153)
                      ..+..+++++++.....+..++.+++
T Consensus      1037 ~~~~~i~~~i~i~~~~~~~~~~~~pl 1062 (1622)
T PLN03130       1037 QIFQLLSTFVLIGIVSTISLWAIMPL 1062 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776666655554333333333333

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.19  E-value=2.3e-09  Score=92.44  Aligned_cols=113  Identities=15%  Similarity=0.097  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHH
Q psy1504          35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSS  113 (153)
Q Consensus        35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~  113 (153)
                      .+.+..++..++.+...+.....+.+...++|..+++|+++.|+.+|+++++|+++||+++|++.+++.+. .+..++..
T Consensus      1010 iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~ 1089 (1522)
T TIGR00957      1010 VYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGS 1089 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566666667677778888999999999999999999999999999999999999999999999984 67788888


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1504         114 PIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQL  147 (153)
Q Consensus       114 ~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~  147 (153)
                      ++.+++++++++....+.+++.+++.++...++.
T Consensus      1090 ~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1522)
T TIGR00957      1090 LFNVIGALIVILLATPIAAVIIPPLGLLYFFVQR 1123 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877765444444433443333333333

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.12  E-value=1.8e-08  Score=79.13  Aligned_cols=127  Identities=13%  Similarity=0.128  Sum_probs=88.2

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|+.+++++|.+...+  +....+.+...++++.++..++.+...+...+.+.++..++|..+|+|++++|..   
T Consensus        21 ~~l~~p~~~~~iid~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~---   95 (544)
T TIGR01842        21 LMLAPPLYMLQVYDRVLTSG--SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR---   95 (544)
T ss_pred             HHHHHHHHHHHHHHHhccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc---
Confidence            45678999999998764211  2222334455566667778888999999999999999999999999999999873   


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHHH--hHHHhHHHHHHHHHHHHHH---HHHhHHHHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTVT--SHFMWSSPIISLIVTYIIY---KDIGNAAFFGLA  137 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~~--~~~~~~~~i~ii~~~~~l~---~~lg~~~l~~~~  137 (153)
                        +.|+..++.++|++++++.+..  ...++..++.++.. ++++   +.++...+++.+
T Consensus        96 --~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~  152 (544)
T TIGR01842        96 --RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAV  152 (544)
T ss_pred             --CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHH
Confidence              3366789999999999998743  44444555444333 3344   344444444444

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.10  E-value=8.6e-09  Score=88.85  Aligned_cols=105  Identities=11%  Similarity=0.046  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHHh
Q psy1504          33 GGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFMW  111 (153)
Q Consensus        33 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~  111 (153)
                      ...+.++.++..++.....+...+.+.+...++|..+++|+++.|+.+|+++++|+++||+++|++.+++.+ ..+..++
T Consensus       953 l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~ 1032 (1495)
T PLN03232        953 IVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFM 1032 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence            334555566667777777788889999999999999999999999999999999999999999999999988 4567777


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1504         112 SSPIISLIVTYIIYKDIGNAAFFGLA  137 (153)
Q Consensus       112 ~~~i~ii~~~~~l~~~lg~~~l~~~~  137 (153)
                      ...+.++++++.+.....+..++.++
T Consensus      1033 ~~~~~~i~~~i~~~~~~~~~~~~~~~ 1058 (1495)
T PLN03232       1033 NQLWQLLSTFALIGTVSTISLWAIMP 1058 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666655443333333333

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.99  E-value=4.7e-08  Score=84.35  Aligned_cols=106  Identities=15%  Similarity=0.099  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHH
Q psy1504          42 LNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIV  120 (153)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~  120 (153)
                      ...++.....+...+.+.+....++..+++++++.|..+|++.++|+++||+++|++.+.+.. ..+..++...+.+++.
T Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~ 1016 (1490)
T TIGR01271       937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA 1016 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555666778888999999999999999999999999999999999999999999998 4677777888888888


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1504         121 TYIIYKDIGNAAFFGLAAAFCVIPLQL  147 (153)
Q Consensus       121 ~~~l~~~lg~~~l~~~~~~~~~~~~~~  147 (153)
                      ++++++..++..++.+++.+++..++.
T Consensus      1017 l~~i~~~~p~l~l~~~~l~~~~~~~~~ 1043 (1490)
T TIGR01271      1017 IFVVSVLQPYIFIAAIPVAVIFIMLRA 1043 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877776666655555554444444443

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=98.99  E-value=4.4e-08  Score=84.79  Aligned_cols=85  Identities=13%  Similarity=0.035  Sum_probs=66.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHH
Q psy1504          53 MSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNA  131 (153)
Q Consensus        53 ~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~  131 (153)
                      .......+....+|..+|+++++.|..+|+++++|+++||+++|++.+.+.+ ..+..++...+.+++++++++....+.
T Consensus      1021 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~ 1100 (1560)
T PTZ00243       1021 LSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFV 1100 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455666789999999999999999999999999999999999999998 467777778888887777776554433


Q ss_pred             HHHHHH
Q psy1504         132 AFFGLA  137 (153)
Q Consensus       132 ~l~~~~  137 (153)
                      .++.++
T Consensus      1101 ~~~~i~ 1106 (1560)
T PTZ00243       1101 LVALVP 1106 (1560)
T ss_pred             HHHHHH
Confidence            333333

>KOG0055|consensus

Probab=98.98  E-value=1.5e-07  Score=78.20  Aligned_cols=120  Identities=11%  Similarity=0.033  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC--CChhHHHHHHHhhHhHHHHHHH-Hh
Q psy1504          31 VAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE--TAPGQIVNLVSNDVSRFDLVTV-TS  107 (153)
Q Consensus        31 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~--~~~G~i~~~~t~D~~~i~~~~~-~~  107 (153)
                      .|+..+++..+...++++...+.....+.+++.++|...|+|+++.+..+||+  ++ |.+.+|+.+|...++.... .+
T Consensus       708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl  786 (1228)
T KOG0055|consen  708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRL  786 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHH
Confidence            47777888888899999999999999999999999999999999999999975  45 9999999999999999984 46


Q ss_pred             HHHhHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q psy1504         108 HFMWSSPIISLIVTY---IIYKDIGNAAFFGLAAAFCVIPLQLCSTY  151 (153)
Q Consensus       108 ~~~~~~~i~ii~~~~---~l~~~lg~~~l~~~~~~~~~~~~~~~i~k  151 (153)
                      ..++.....++.+++   ..-|+++..+++..|++.+..-.+..+.+
T Consensus       787 ~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~  833 (1228)
T KOG0055|consen  787 SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLK  833 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666655554444443   33367777777777776666666555443

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=8e-08  Score=73.61  Aligned_cols=106  Identities=17%  Similarity=0.146  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHH
Q psy1504          32 AGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFM  110 (153)
Q Consensus        32 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~  110 (153)
                      .++..=++.+.+++.+|.-....+....++..++|..+|+|+...++.-..+.+.||+.||++.|++.+++.+ ..+.-.
T Consensus        60 p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~  139 (573)
T COG4987          60 PSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPA  139 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhH
Confidence            3445556778899999999999999999999999999999999999999999999999999999999999998 444333


Q ss_pred             hHHHHHHHHHHHHH-HHHHhHHHHHHHH
Q psy1504         111 WSSPIISLIVTYII-YKDIGNAAFFGLA  137 (153)
Q Consensus       111 ~~~~i~ii~~~~~l-~~~lg~~~l~~~~  137 (153)
                      +.+...+.++.+.+ +.-.+...+++..
T Consensus       140 ~~a~~~~~~~~i~L~f~~~~~Alll~~~  167 (573)
T COG4987         140 VVALVLIAVVTIGLSFFSIPLALLLGLI  167 (573)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34444444444333 3333334444433

>KOG0054|consensus

Probab=98.89  E-value=1.1e-07  Score=80.24  Aligned_cols=116  Identities=18%  Similarity=0.134  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHH
Q psy1504          35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSS  113 (153)
Q Consensus        35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~  113 (153)
                      .+.+..+.+.++...........+.+....+-+.++++.++-|+++||.+++|.|+||++.|++.+.+... .+..+...
T Consensus       863 vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~  942 (1381)
T KOG0054|consen  863 VYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQS  942 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHH
Confidence            34445555566666677777788899999999999999999999999999999999999999999999984 57777888


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504         114 PIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST  150 (153)
Q Consensus       114 ~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~  150 (153)
                      .+++++.++++.....|..++.+++.+++..++.+..
T Consensus       943 ~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~  979 (1381)
T KOG0054|consen  943 LLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYL  979 (1381)
T ss_pred             HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888877888888888888877776543

>KOG0057|consensus

Probab=98.52  E-value=1.1e-05  Score=62.38  Aligned_cols=130  Identities=17%  Similarity=0.225  Sum_probs=106.0

Q ss_pred             hhchhHHHHHHHhhhccc-Ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccc
Q psy1504           3 LGITRPFVLGMFLSYFKV-ASTTA-TETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVS   80 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~-~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~   80 (153)
                      +....|.+.+..+|.... ++++. ....-..+..+++..+..++++........+..+++.++....+|+|.+.++.++
T Consensus        45 l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~  124 (591)
T KOG0057|consen   45 LNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSF  124 (591)
T ss_pred             hheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            456678888888887642 22221 1112234446677788889999999999999999999999999999999999999


Q ss_pred             ccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHH
Q psy1504          81 TRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAA  132 (153)
Q Consensus        81 ~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~  132 (153)
                      +.+..+|++.+.+..-...+..... ...+++...+.+..++..++++.|...
T Consensus       125 ~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~  177 (591)
T KOG0057|consen  125 FLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAF  177 (591)
T ss_pred             hcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            9999999999999999999999996 468888888999999999999988744

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.39  E-value=8.8e-06  Score=60.92  Aligned_cols=104  Identities=9%  Similarity=-0.013  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q psy1504          46 LNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIY  125 (153)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~  125 (153)
                      .+-..+.-.+..+.+....+|.++-+|++.-|...+++.+++.++...++|+..+.-.+..++++..+.+..+++..++.
T Consensus        64 ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLa  143 (546)
T COG4615          64 SSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLA  143 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHH
Confidence            33445666778888999999999999999999999999999999999999999999555678999888888899999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhh
Q psy1504         126 KDIGNAAFFGLAAAFCVIPLQLCS  149 (153)
Q Consensus       126 ~~lg~~~l~~~~~~~~~~~~~~~i  149 (153)
                      +.-+...++++..+.+.+-.+...
T Consensus       144 yLSp~mf~l~vV~ivv~~~~~~~~  167 (546)
T COG4615         144 YLSPKMFLLTVVWIVVTIWGGFVL  167 (546)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888877666665555443

>KOG0055|consensus

Probab=98.38  E-value=1.6e-05  Score=66.64  Aligned_cols=107  Identities=12%  Similarity=-0.023  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHH
Q psy1504          32 AGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFM  110 (153)
Q Consensus        32 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~  110 (153)
                      ++..++.+.+...+..+....-+.+.+.|....+|..-.+..+|-..++||++.+|++.+++++|++.+++.+ .-...+
T Consensus        73 ~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~  152 (1228)
T KOG0055|consen   73 VALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNF  152 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHH
Confidence            3444444555555566666677788999999999999999999999999999999999999999999999999 456666


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504         111 WSSPIISLIVTYIIYKDIGNAAFFGLAA  138 (153)
Q Consensus       111 ~~~~i~ii~~~~~l~~~lg~~~l~~~~~  138 (153)
                      +....+++..++.-|..-++.+++.+.+
T Consensus       153 i~~~~~fi~g~ii~F~~~W~Ltlv~l~~  180 (1228)
T KOG0055|consen  153 IQLLATFIAGFVIGFYYGWKLTLVMLSF  180 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665555555555544433345444443

>PF13748 ABC_membrane_3: ABC transporter transmembrane region

Probab=98.03  E-value=0.0018  Score=45.38  Aligned_cols=134  Identities=10%  Similarity=-0.024  Sum_probs=83.9

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|.+.+..+|.+.+++   ......++.    ..++..........+-++...++..++-..++.+-.      .+
T Consensus        25 l~l~yPl~~G~AIn~ll~g~---~~~~~~~~~----~~l~~~~igaaRR~~DTRvf~rIy~~la~~vi~~qr------~~   91 (237)
T PF13748_consen   25 LLLLYPLFIGFAINALLNGD---VWQALMYAA----LVLLMWAIGAARRIYDTRVFSRIYAELAVPVILSQR------QQ   91 (237)
T ss_pred             HHHHHHHHHHHHHHHHHccc---HHHHHHHHH----HHHHHHHHhhhhHHHhhHHHHHHHHHHhHHHHHHHH------Hh
Confidence            45689999999999886422   222223322    222223333334444455555555555555444332      34


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST  150 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~  150 (153)
                      +.+++++..|.+ =..++-|+++ .+|.++.+.+.++++.+++...--|..+.++..+..+..+...++
T Consensus        92 ~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~~i~~~f~  159 (237)
T PF13748_consen   92 GLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFLLILPRFA  159 (237)
T ss_pred             CCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888883 3678888884 799999999999999999987666666666655555444444443

>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.89  E-value=0.0039  Score=45.26  Aligned_cols=102  Identities=12%  Similarity=0.100  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCC---ChhHHHHHHHhhHhHHHHHHH-Hh
Q psy1504          32 AGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRET---APGQIVNLVSNDVSRFDLVTV-TS  107 (153)
Q Consensus        32 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~---~~G~i~~~~t~D~~~i~~~~~-~~  107 (153)
                      ......+..+..+.......|....+..+.+..|.+.+.++-++-...|.-+.   +..+.=.|++.|++++.+... ..
T Consensus        68 ~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~  147 (281)
T PF06472_consen   68 LLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLF  147 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHH
Confidence            33345566667777788888899999999999999999999887774443222   244666799999999999885 45


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhHHHH
Q psy1504         108 HFMWSSPIISLIVTYIIYKDIGNAAF  133 (153)
Q Consensus       108 ~~~~~~~i~ii~~~~~l~~~lg~~~l  133 (153)
                      ..++..++.++.....++...|+...
T Consensus       148 ~~~~~~~~~l~~f~~~L~~~~g~~~~  173 (281)
T PF06472_consen  148 LGLLKPILDLISFSVILWSISGWLGP  173 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            77778888888888888887776544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.67  E-value=0.0049  Score=47.89  Aligned_cols=141  Identities=13%  Similarity=0.091  Sum_probs=99.5

Q ss_pred             chhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCC
Q psy1504           5 ITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRET   84 (153)
Q Consensus         5 ~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~   84 (153)
                      +..|...-++-|.+-...  +....+.+.+..++.+.++..++..-.....+++.++-..+...+|+-..+.+.......
T Consensus        40 L~~~lyMLQVyDRVL~S~--s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g  117 (580)
T COG4618          40 LTGPLYMLQVYDRVLPSR--SVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSG  117 (580)
T ss_pred             HhhhHHHHHHHhhhccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCC
Confidence            445555556666664322  223455666677778888999999999999999999999999999999876665543333


Q ss_pred             ChhHHHHHHHhhHhHHHHHHHH--hHHH---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504          85 APGQIVNLVSNDVSRFDLVTVT--SHFM---WSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT  152 (153)
Q Consensus        85 ~~G~i~~~~t~D~~~i~~~~~~--~~~~---~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~  152 (153)
                      +..+.    -+|.+++.+|.+.  ...+   ...|+.+.+ ++.+-..+|+.+++|..+++.+..+|-..+++
T Consensus       118 ~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~  185 (580)
T COG4618         118 DGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLGLIALAGAIILVVLALLNERATRK  185 (580)
T ss_pred             ccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333    3699999999853  3333   344544333 33444688999999999999999999888876

>KOG0056|consensus

Probab=96.60  E-value=0.0054  Score=47.77  Aligned_cols=93  Identities=11%  Similarity=0.125  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHH-hHHHhHHHHHHHHHH
Q psy1504          43 NSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVT-SHFMWSSPIISLIVT  121 (153)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~-~~~~~~~~i~ii~~~  121 (153)
                      +.+++...++.+.+..+...+++-..+|+|+..++....-+.++||++..+....+.+. +..+ ..++....+-+++++
T Consensus       272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~  350 (790)
T KOG0056|consen  272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM  350 (790)
T ss_pred             ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence            35666677777888999999999999999999999999999999999999988877766 4433 345444455555555


Q ss_pred             HHHHHHHhHHHHHHHHH
Q psy1504         122 YIIYKDIGNAAFFGLAA  138 (153)
Q Consensus       122 ~~l~~~lg~~~l~~~~~  138 (153)
                      ++.+..  ...++|+.+
T Consensus       351 vYF~~~--Fn~wFgLIV  365 (790)
T KOG0056|consen  351 VYFFIK--FNIWFGLIV  365 (790)
T ss_pred             hhhhhh--HhHHHHHHH
Confidence            544443  334444443

>PRK12369 putative transporter; Reviewed

Probab=96.26  E-value=0.32  Score=36.27  Aligned_cols=88  Identities=13%  Similarity=0.124  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHH
Q psy1504          35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSS  113 (153)
Q Consensus        35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~  113 (153)
                      .+.+.............|...+...+.|..|.+...++-+....    +.+..|  .|++.|++.+.+... ....++.+
T Consensus        68 ~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~----~iDNPD--QRI~EDi~~f~~~tl~l~~~~i~s  141 (326)
T PRK12369         68 SFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD----NIEGSS--QRIQEDTYRFAKIMESLGLSFLRA  141 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCcc--HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555666677888888999999999999999887431    122233  799999999999885 45777788


Q ss_pred             HHHHHHHHHHHHHHH
Q psy1504         114 PIISLIVTYIIYKDI  128 (153)
Q Consensus       114 ~i~ii~~~~~l~~~l  128 (153)
                      +++++....+++..-
T Consensus       142 ~~~l~sF~~iLW~lS  156 (326)
T PRK12369        142 IMTLIAFIPILWGLS  156 (326)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            888877777777633

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.14  Score=39.27  Aligned_cols=93  Identities=11%  Similarity=0.111  Sum_probs=73.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHH
Q psy1504          53 MSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNA  131 (153)
Q Consensus        53 ~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~  131 (153)
                      .....++.....+-...|.|+.+|+..+.-+.++|.+--.+.....-++...+ .+.+.....+.+..+.+++++.-||+
T Consensus         5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~   84 (497)
T COG5265           5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW   84 (497)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence            34566777788888999999999999999999999998888888888998885 46777788889999998998888875


Q ss_pred             HHHH-HHHHHHHHHH
Q psy1504         132 AFFG-LAAAFCVIPL  145 (153)
Q Consensus       132 ~l~~-~~~~~~~~~~  145 (153)
                      .... +..+.++.-+
T Consensus        85 f~~~t~vtv~lY~~f   99 (497)
T COG5265          85 FALTTLVTVILYLLF   99 (497)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            4444 4444444433

>PRK11098 microcin B17 transporter; Reviewed

Probab=94.81  E-value=1.4  Score=33.95  Aligned_cols=88  Identities=15%  Similarity=0.143  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHH-hHHHhHH
Q psy1504          35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVT-SHFMWSS  113 (153)
Q Consensus        35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~-~~~~~~~  113 (153)
                      ......++.........+...+...+.|..|.+...+|=++..  ..+     +-=.|+++|++++.+.... ...++.+
T Consensus       143 ~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie-----nPDQRIqEDi~~F~~~tl~L~~~li~s  215 (409)
T PRK11098        143 VFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE-----GAAQRVQEDTMRFASTLENLGVSFINA  215 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-----CccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555666667778888889999999999988877664  111     2457999999999998854 5777788


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy1504         114 PIISLIVTYIIYKDIG  129 (153)
Q Consensus       114 ~i~ii~~~~~l~~~lg  129 (153)
                      +++++....+++..-|
T Consensus       216 i~tLisF~~ILW~LS~  231 (409)
T PRK11098        216 IMTLIAFLPVLVTLSA  231 (409)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            8888777777776443

>KOG0060|consensus

Probab=94.09  E-value=1.1  Score=35.88  Aligned_cols=102  Identities=18%  Similarity=0.140  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCC---hhHHHHHHHhhHhHHHHHHHH-hHHHh
Q psy1504          36 LVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETA---PGQIVNLVSNDVSRFDLVTVT-SHFMW  111 (153)
Q Consensus        36 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~---~G~i~~~~t~D~~~i~~~~~~-~~~~~  111 (153)
                      .+.+....+..+....+...-...+.+..+..-++++.++--..|.-.+.   .-+==.|++.|++++...... ..++.
T Consensus       128 ~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~  207 (659)
T KOG0060|consen  128 YVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLL  207 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhh
Confidence            34445556666777788888889999999999999988875444422211   122236899999999998854 57788


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1504         112 SSPIISLIVTYIIYKDIGNAAFFGLA  137 (153)
Q Consensus       112 ~~~i~ii~~~~~l~~~lg~~~l~~~~  137 (153)
                      .+|+.++...+-++...||.-.+.+.
T Consensus       208 ~a~~di~~Y~~~l~~s~g~~gp~~i~  233 (659)
T KOG0060|consen  208 KAPFDLVYYTFRLFESAGWLGPVSIF  233 (659)
T ss_pred             ccceeeehhhhHHhhhcCcccHHHHH
Confidence            88998888888888877775444433

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=93.19  E-value=4.1  Score=33.46  Aligned_cols=116  Identities=13%  Similarity=0.078  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCC-hhHHHHHHHhhHhHHHHHHHHhHHHhHH
Q psy1504          35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETA-PGQIVNLVSNDVSRFDLVTVTSHFMWSS  113 (153)
Q Consensus        35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~-~G~i~~~~t~D~~~i~~~~~~~~~~~~~  113 (153)
                      ..++..+..++......+...+...+++.++...+.++..+. ..+++-.. .++.=+.++.=++.++.+.......+..
T Consensus       140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~-~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~  218 (659)
T TIGR00954       140 KWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSG-FTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSN  218 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            344455566677777777777777777777777777777764 23222211 2224334444445555554445555555


Q ss_pred             HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhhhc
Q psy1504         114 PIISLIVTYIIYKDIGN-AAFFGLAAAFCVIPLQLCSTY  151 (153)
Q Consensus       114 ~i~ii~~~~~l~~~lg~-~~l~~~~~~~~~~~~~~~i~k  151 (153)
                      .+.-++.++.....+.. .-.....++++..|+...+.+
T Consensus       219 l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~  257 (659)
T TIGR00954       219 LTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLT  257 (659)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            55555544433333332 445555667777888877765

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=90.26  E-value=8.8  Score=31.25  Aligned_cols=86  Identities=19%  Similarity=0.152  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCCh------hHHHHHHHhhHhHHHHHHHH-hHHHhHHHH
Q psy1504          43 NSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAP------GQIVNLVSNDVSRFDLVTVT-SHFMWSSPI  115 (153)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~------G~i~~~~t~D~~~i~~~~~~-~~~~~~~~i  115 (153)
                      .........|.......+.+.-+.+.+.++-++-...|+ -...      -+.=.|+..|+..+.+.... ...++.+.+
T Consensus        99 ~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~-l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~i  177 (604)
T COG4178          99 LVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYR-LAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVI  177 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH-HHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            333344467777788889999999999999888774443 2222      34457999999999887754 466677777


Q ss_pred             HHHHHHHHHHHHHh
Q psy1504         116 ISLIVTYIIYKDIG  129 (153)
Q Consensus       116 ~ii~~~~~l~~~lg  129 (153)
                      ..+....+++...|
T Consensus       178 slisF~~iLw~lsg  191 (604)
T COG4178         178 SLISFTGILWSLSG  191 (604)
T ss_pred             HHHHHHHHHHHccC
Confidence            77777777775444

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=82.90  E-value=23  Score=28.57  Aligned_cols=12  Identities=17%  Similarity=0.409  Sum_probs=4.9

Q ss_pred             ChhHHHHHHHhh
Q psy1504          85 APGQIVNLVSND   96 (153)
Q Consensus        85 ~~G~i~~~~t~D   96 (153)
                      +.+..-+.=+.|
T Consensus       107 ~~~~~~~~~~g~  118 (574)
T PRK11160        107 SPAGLARYRQGD  118 (574)
T ss_pred             ChHhhccCChhH
Confidence            344444333444

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=82.75  E-value=24  Score=28.51  Aligned_cols=34  Identities=18%  Similarity=0.083  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1504          39 ITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRK   72 (153)
Q Consensus        39 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k   72 (153)
                      ..++....++.......+...+++.++-+.+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~  109 (588)
T PRK11174         76 RALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQL  109 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344444444445555555555555555555544

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=81.23  E-value=26  Score=28.02  Aligned_cols=23  Identities=9%  Similarity=0.132  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHH
Q psy1504          47 NAHYNTMSSHIGLRMRAAVCSLV   69 (153)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~lr~~i   69 (153)
                      .....+.......+........+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~l   81 (544)
T TIGR01842        59 LGLLDALRSFVLVRIGEKLDGAL   81 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444433333333

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=80.16  E-value=28  Score=27.68  Aligned_cols=30  Identities=7%  Similarity=0.035  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy1504          45 LLNAHYNTMSSHIGLRMRAAVCSLVFRKCL   74 (153)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~lr~~if~k~l   74 (153)
                      +......+.......+....+...+=+++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~   93 (529)
T TIGR02868        64 IGRAVFRYLERLVGHDAALRSLGRLRVRVY   93 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555544444

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.65
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.61
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.61
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.6
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.58
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.57
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.48
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.39
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.38
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.02
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	84.17

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.65  E-value=9.5e-15  Score=114.15  Aligned_cols=146  Identities=16%  Similarity=0.116  Sum_probs=116.6

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|++++.++|.+....  +......++..++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus        52 ~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~  129 (598)
T 3qf4_B           52 LGVLSPYLIGKTIDVVFVPR--RFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD  129 (598)
T ss_dssp             HHHHHHHHHHHHHHHTTTTT--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc
Confidence            45678999999998874322  2222334555666777888899999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST  150 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~  150 (153)
                      ++++|+++|++++|++.+++.+ ..++.++..++.+++++++++..-++.+++.+...++..++...+.
T Consensus       130 ~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~  198 (598)
T 3qf4_B          130 RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS  198 (598)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998 4688999999999999888887666666666555555555544443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.61  E-value=1.1e-14  Score=113.48  Aligned_cols=148  Identities=12%  Similarity=0.083  Sum_probs=113.7

Q ss_pred             hhchhHHHHHHHhhhcccCcccc-hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTA-TETA----AVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLD   77 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~-~~~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~   77 (153)
                      +.+..|++++.++|.+...++.. ....    +.++..++++.++..++.+...+...+.+.++..++|..+|+|++++|
T Consensus        29 ~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~  108 (578)
T 4a82_A           29 IPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS  108 (578)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            45678999999998764322111 1111    334445666677888899999999999999999999999999999999


Q ss_pred             cccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504          78 MVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST  150 (153)
Q Consensus        78 ~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~  150 (153)
                      ..+++++++|+++|++++|++++++.+. .++.++.+++.+++++++++..-++.+++++...++..++...+.
T Consensus       109 ~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~  182 (578)
T 4a82_A          109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFF  182 (578)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999985 578889999999888888887666556555544444444444433

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.61  E-value=3.6e-14  Score=110.66  Aligned_cols=130  Identities=10%  Similarity=0.141  Sum_probs=102.4

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|++++.++|.....+  +....+.+...++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus        38 ~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~  115 (587)
T 3qf4_A           38 CDLSQPTLLARIVDEGIARG--DFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVN  115 (587)
T ss_dssp             HHHHHHHHHHHHHHHTTTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc
Confidence            45678999999998764322  2223334455566667778888888889999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFF  134 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~  134 (153)
                      ++++|+++|++++|++.+++.+. .+..++..++.+++++++++..-++.+++
T Consensus       116 ~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~  168 (587)
T 3qf4_A          116 RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV  168 (587)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984 56777888888888877776543333333

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.60  E-value=1.3e-13  Score=107.49  Aligned_cols=146  Identities=8%  Similarity=-0.032  Sum_probs=109.8

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +.+..|.+++.++|.+...+  ........+..++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus        40 ~~~~~~~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~  117 (582)
T 3b5x_A           40 ADTYMISLLKPLLDEGFGNA--ESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD  117 (582)
T ss_pred             HHHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHC
Confidence            34567888888888764211  1121222233355667788888999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST  150 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~  150 (153)
                      ++++|++++++++|++.+++.+ ..++.++..++.++++++++++.-++.+++.+..+++...+...+.
T Consensus       118 ~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~  186 (582)
T 3b5x_A          118 QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVS  186 (582)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987 5688888999888888888876544455555444444444444333

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.58  E-value=1.1e-13  Score=107.86  Aligned_cols=145  Identities=6%  Similarity=-0.061  Sum_probs=109.2

Q ss_pred             hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504           4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE   83 (153)
Q Consensus         4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~   83 (153)
                      .+..|++++.++|.+...+  +.......+..++++.++..++.+...+...+.+.++..++|..+|+|++++|..++++
T Consensus        41 ~~~~~~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~  118 (582)
T 3b60_A           41 DTFMLSLLKPLLDDGFGKT--DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK  118 (582)
T ss_dssp             HHHHHHHHTHHHHSSTTST--THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH
T ss_pred             HHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC
Confidence            4567888888888764211  11222222333556677888889999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504          84 TAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST  150 (153)
Q Consensus        84 ~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~  150 (153)
                      +++|++++++++|++.+++.+ ..++.++..++..++++++++..-++.+++.+...++...+...+.
T Consensus       119 ~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~  186 (582)
T 3b60_A          119 QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS  186 (582)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987 5688889999988888888876544445554444444444444333

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.48  E-value=5.6e-13  Score=111.92  Aligned_cols=119  Identities=8%  Similarity=-0.056  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHH
Q psy1504          32 AGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFM  110 (153)
Q Consensus        32 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~  110 (153)
                      ++..++++.+...++.+...+.+.+.+.+...++|.++|+|++++|.++|+++++|+++|++++|++.+++.+ ..++.+
T Consensus       138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~  217 (1321)
T 4f4c_A          138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA  217 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667778888888999999999999999999999999999999999999999999999999999998 568889


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504         111 WSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST  150 (153)
Q Consensus       111 ~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~  150 (153)
                      +..++++++++++++..-+..+++.+.++++..++...+.
T Consensus       218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~  257 (1321)
T 4f4c_A          218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIA  257 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888876544455555444444444444443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.39  E-value=8.1e-12  Score=104.76  Aligned_cols=97  Identities=8%  Similarity=-0.061  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHH
Q psy1504          31 VAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHF  109 (153)
Q Consensus        31 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~  109 (153)
                      .++..++++.+...++.+...+...+.+.+...++|..+|+|++++|..+|+++++|+++||+++|++.+++.+ ..+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~  188 (1284)
T 3g5u_A          109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM  188 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666777888888888999999999999999999999999999999999999999999999999999998 46788


Q ss_pred             HhHHHHHHHHHHHHHHHH
Q psy1504         110 MWSSPIISLIVTYIIYKD  127 (153)
Q Consensus       110 ~~~~~i~ii~~~~~l~~~  127 (153)
                      ++..++.+++++++++..
T Consensus       189 ~~~~~~~~i~~~~~~~~~  206 (1284)
T 3g5u_A          189 FFQAMATFFGGFIIGFTR  206 (1284)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888777777653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.38  E-value=5.1e-11  Score=100.22  Aligned_cols=117  Identities=9%  Similarity=0.005  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC--CChhHHHHHHHhhHhHHHHHH-H
Q psy1504          29 AAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE--TAPGQIVNLVSNDVSRFDLVT-V  105 (153)
Q Consensus        29 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~--~~~G~i~~~~t~D~~~i~~~~-~  105 (153)
                      ...|+..++++.++..++.+...+...+.+.++..++|..+|+|+++.|.++|+.  +++|+++||+++|++.+.+.. .
T Consensus       793 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~  872 (1321)
T 4f4c_A          793 GHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDF  872 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHH
Confidence            4456666777778888889999999999999999999999999999999999985  789999999999999999998 5


Q ss_pred             HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1504         106 TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPL  145 (153)
Q Consensus       106 ~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~  145 (153)
                      .+..++..++.+++++++++..-.+.+++.++++++....
T Consensus       873 ~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~  912 (1321)
T 4f4c_A          873 RFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFG  912 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHH
Confidence            6788888888887777777654444444444433333333

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.02  E-value=1.1e-08  Score=86.17  Aligned_cols=136  Identities=8%  Similarity=0.050  Sum_probs=96.0

Q ss_pred             hhHHHHHHHhhhcccCcc-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc-
Q psy1504           6 TRPFVLGMFLSYFKVAST-T-ATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR-   82 (153)
Q Consensus         6 ~~p~~~~~ii~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~-   82 (153)
                      ..|.+.+.+++.+..... . .......+...++++.++..++.+...+...+.+.++..++|..+|+|+++.|..+|+ 
T Consensus       723 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~  802 (1284)
T 3g5u_A          723 AFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDD  802 (1284)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHS
T ss_pred             HHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC
Confidence            345555666654432111 0 1112224444556666777777788888889999999999999999999999999998 


Q ss_pred             -CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHH
Q psy1504          83 -ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYK---DIGNAAFFGLAAAFC  141 (153)
Q Consensus        83 -~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~~~~~  141 (153)
                       ++++|+++|++++|++.+++... .+..++.....++.++++++.   .+++..++.++++++
T Consensus       803 ~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~  866 (1284)
T 3g5u_A          803 PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAI  866 (1284)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence             57899999999999999999984 567777777777666666553   444455555554333

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=84.17  E-value=13  Score=28.94  Aligned_cols=31  Identities=13%  Similarity=0.058  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1504          41 FLNSLLNAHYNTMSSHIGLRMRAAVCSLVFR   71 (153)
Q Consensus        41 l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~   71 (153)
                      +......+...+...+...+++.++-+.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~  108 (587)
T 3qf4_A           78 VGGIGCTVFASYASQNFGADLRRDLFRKVLS  108 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3333344444444445555555555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	99.65
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	99.62
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	87.92

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=6.5e-15  Score=103.65  Aligned_cols=147  Identities=6%  Similarity=-0.065  Sum_probs=113.7

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR   82 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~   82 (153)
                      +....|.+++.++|....++  +.......+..++++.++..++.+...+...+.+.++..++|+++|+|+++.|..+++
T Consensus        31 ~~~~~~~~~~~~id~~~~~~--~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~  108 (319)
T d3b60a2          31 SDTFMLSLLKPLLDDGFGKT--DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD  108 (319)
T ss_dssp             HHHHHHHHHTHHHHSSTTST--THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHH
T ss_pred             HHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccchhhHHHHhhcccchhhcc
Confidence            34678888899998764322  2233334455667778888999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q psy1504          83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTY  151 (153)
Q Consensus        83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k  151 (153)
                      ++++|++++++++|++.+++... .....+..++..+++.+.++..-+..+++.+...++...+.....|
T Consensus       109 ~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~  178 (319)
T d3b60a2         109 KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK  178 (319)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchhhhhhHHHHHHHHHHhhhh
Confidence            99999999999999999999984 5677778888888888877766555555555555555544444433

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.62  E-value=4e-15  Score=105.04  Aligned_cols=149  Identities=12%  Similarity=0.078  Sum_probs=112.1

Q ss_pred             hhchhHHHHHHHhhhcccCcccchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC
Q psy1504           3 LGITRPFVLGMFLSYFKVASTTATET-----AAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLD   77 (153)
Q Consensus         3 ~~~~~p~~~~~ii~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~   77 (153)
                      +....|++.+.++|.+..+++.....     .+..+..+++..+++.++.+...+...+.+.++..++|..+|+|++++|
T Consensus        29 ~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~  108 (323)
T d2hyda2          29 IPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS  108 (323)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhccc
Confidence            45678999999998874322211111     1123334555667788888899999999999999999999999999999


Q ss_pred             cccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q psy1504          78 MVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTY  151 (153)
Q Consensus        78 ~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k  151 (153)
                      ..+++++++||+++++++|++++++... .+...+...+.++++.+.++..-...+++.++..++...+.....|
T Consensus       109 ~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~  183 (323)
T d2hyda2         109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG  183 (323)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999984 5778888888888888888776555555555555555544444443

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.92  E-value=2.3  Score=27.55  Aligned_cols=114  Identities=11%  Similarity=-0.081  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcc-cccCCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHH
Q psy1504          37 VLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMV-STRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPI  115 (153)
Q Consensus        37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~-~~~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i  115 (153)
                      .+..+...+......+.......+....+...+-++..+--.+ ..+..+..+--+.++...+.++.............+
T Consensus        59 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~  138 (319)
T d3b60a2          59 PLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVV  138 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhh
Confidence            3444455556666666666777777777777666665532222 222223333344444444444444344445444444


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504         116 ISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST  150 (153)
Q Consensus       116 ~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~  150 (153)
                      ..+...+.....+.........+.++..|+...+.
T Consensus       139 ~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~  173 (319)
T d3b60a2         139 REGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAI  173 (319)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHhhhccchhhhhhHHHHHHHHH
Confidence            44444444444433333222334555555555443