Psyllid ID: psy15063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MLSFEDKVKQIKEILAQLSPSDYSEDNGSDDYDYYDEELPEQLKYLTLFEEKYGKGRGNGGSISDPFYKGSKDIMGDSSTTGTGLDVNITYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVTK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEcccEEEEcEEEEEEccEEEEccEEEEEccccccccccEEEEEEccEEccccccccEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEEEEEcHHHHHHHHcccccccEEEcccccccccccccccccccccccccEEEccccccccccccccccccccccccHHHEEccccEEEcccEEEEccEEEEEEccccccccEEEEcccEEEEEccEEEEEEEEEEccccccEEEEccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccccEEccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEEEcccccccEEEEEEEEcccEEEEEHHHccccccccEEEEEccEcccccccccEEEEEEEEEEEccccEccccEcccEEEEccccccccccccccEcccccccccccEEEEEEcccccccccccHHHHEEEcEEEEccHHHHHHccccccccEEEEcccccccccccEEEEcccccEEEEEEEccccccccccEcEccEEccccccccEEEEEEccEEEEEEEEEEccEEEEcHHHcccccEEEEccccEEEEEEEEEEEcccccccccccEEEEEHHHHHHHHHccEEEcc
Coil and Loop (DISEMBL)
MLSFEDKVKQIKEILAQlspsdysedngsddydyydeELPEQLKYLTLFEEkygkgrgnggsisdpfykgskdimgdssttgtgldvnityscgdvskervtyfksphhparpssgltcdydvAIRQDVCAVRIEFEKVNLArkvggvcdidqlrdtpVSELVLHlgdhdltqlnetshvrrGVRRVlfhshfhpfvlsndiallqldrpvpltgtiqpvclpqkgesfigkrghvvgwgvtsfpmgepsptlQKLEVKVLSNARCSTVIEESIGigmlcaapdetqgtcfvpvspvgytkkHLQQfhqgttyrqprrriilggeadigefpWQVAIALDGMFFCGGALLNEHFVLTAAHCimtggpltfeqdgYHVLAGIVSYGvtgcaimpsypdlyTRVSEYIRWIHVNAIVTK
Flexible Loop (DISEMBL)
MLSFEDKVKQIKEIlaqlspsdysednGSDDYDYYDEELPEQLKYLTLFEEKYgkgrgnggsisdPFYKGSKDIMGDSsttgtgldvnITYSCGDVSKERVTYFksphhparpssgltcdYDVAIRQDVCAVRIEFekvnlarkvggvcdidqlRDTPVSELVLHLGdhdltqlnetsHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQqfhqgttyrqprrRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVTK
Low Complexity Region (SEG)
MLSFEDKVKQIKEILAQLSPsdysedngsddydyydeeLPEQLKYLTLFEEKYGKGRGNGGSISDPFYKGSKDIMGDSSTTGTGLDVNITYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVTK
Disordered region (IsUnstruct)
********************************DYYDEELPEQLKYLTLFEEKYG***************************GTGLDVNITYSCGDVSKERVTYFK**********GLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGE**PTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV**
Disordered Region (DISOPRED)
*****DKVKQIKEILA**********NGSDDYDYYDEELPEQLKYLTLFEEKY*******************************LDVNITYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN*I***
Disordered Region (DISEMBL)
MLSFEDKVKQIKEILAQLSPSDYSEDNGSDDYDYYDEELPEQLKYLTLFEEKYGKGRGNGGSISDPFYKGSKDIMGDSSTTGTGLDVNITYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKK***********RQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVTK
Disordered Region (DISPRO)
*LSFEDKVKQIKEILAQLSPSDYSEDNGSDDYDYYDEELPEQLKYLTLFEEKYGKGRGNGGSISDPFYKGSKDIMGDSSTTGTGLDVNITYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVTK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSFEDKVKQIKEILAQLSPSDYSEDNGSDDYDYYDEELPEQLKYLTLFEEKYGKGRGNGGSISDPFYKGSKDIMGDSSTTGTGLDVNITYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	417	2.2.26 [Sep-21-2011]
Q0IIH7	855	Suppressor of tumorigenic	no	N/A	0.273	0.133	0.396	6e-16
Q9Y5Y6	855	Suppressor of tumorigenic	yes	N/A	0.354	0.173	0.312	2e-13
Q7RTY7	1134	Ovochymase-1 OS=Homo sapi	no	N/A	0.453	0.166	0.280	2e-12
Q7Z410	1059	Transmembrane protease se	no	N/A	0.297	0.117	0.349	3e-12
P97435	1069	Enteropeptidase OS=Mus mu	yes	N/A	0.311	0.121	0.318	2e-11
P57727	454	Transmembrane protease se	no	N/A	0.237	0.218	0.401	2e-11
P69525	1065	Transmembrane protease se	no	N/A	0.297	0.116	0.341	3e-11
Q8K1T0	453	Transmembrane protease se	no	N/A	0.232	0.214	0.405	4e-11
P98073	1019	Enteropeptidase OS=Homo s	no	N/A	0.311	0.127	0.315	5e-11
O35453	436	Serine protease hepsin OS	no	N/A	0.211	0.201	0.416	7e-11

>sp|Q0IIH7|ST14_BOVIN Suppressor of tumorigenicity 14 protein homolog OS=Bos taurus GN=ST14 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           LG HD ++ N      RG++R++ H  F+ F    DIALLQLDRPV  + TI+P+CLP  
Sbjct: 676 LGLHDQSKRNAPGVQERGLQRIIKHPFFNDFTFDYDIALLQLDRPVEYSATIRPICLPAA 735

Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
             +F  GK   V GWG T    G+ +  LQK E++V++   C  ++ + I   M+C
Sbjct: 736 DYTFPTGKAIWVTGWGHTQ-EAGQGAMILQKGEIRVINQTTCEHLLPQQITPRMIC 790

Degrades extracellular matrix. Proposed to play a role in breast cancer invasion and metastasis. Exhibits trypsin-like activity as defined by cleavage of synthetic substrates with Arg or Lys as the P1 site.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 9

>sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 protein OS=Homo sapiens GN=ST14 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 149 CDIDQ--LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ 206
           C ID    R +  ++    LG HD +Q +      R ++R++ H  F+ F    DIALL+
Sbjct: 657 CYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLE 716

Query: 207 LDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNAR 265
           L++P   +  ++P+CLP     F  GK   V GWG T +  G  +  LQK E++V++   
Sbjct: 717 LEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQY-GGTGALILQKGEIRVINQTT 775

Query: 266 CSTVIEESIGIGMLC-----AAPDETQGTCFVPVSPV 297
           C  ++ + I   M+C        D  QG    P+S V
Sbjct: 776 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSV 812

Degrades extracellular matrix. Proposed to play a role in breast cancer invasion and metastasis. Exhibits trypsin-like activity as defined by cleavage of synthetic substrates with Arg or Lys as the P1 site.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 9

>sp|Q7RTY7|OVCH1_HUMAN Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 103/260 (39%), Gaps = 71/260 (27%)

Query: 153 QLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVP 212
           QL++ P+S  ++  GDHD      T  VRR  + ++ H  F+     +DIAL+QL  P+ 
Sbjct: 618 QLKNNPLSWTII-AGDHDRNLKESTEQVRRA-KHIIVHEDFNTLSYDSDIALIQLSSPLE 675

Query: 213 LTGTIQPVCLPQKGES-FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIE 271
               ++PVCLP   E  F  +   V GWG  S   G  S  LQ+++V VL    C     
Sbjct: 676 YNSVVRPVCLPHSAEPLFSSEICAVTGWGSISADGGLAS-RLQQIQVHVLEREVCEHT-- 732

Query: 272 ESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEF 331
                              +    P G T+K                 +I  G A  GE 
Sbjct: 733 -------------------YYSAHPGGITEK-----------------MICAGFAASGE- 755

Query: 332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFE-QDGYHVLAGIVSYGVTGCA 390
                       FC G                +GGPL    ++G  VL GIVS+G  GC 
Sbjct: 756 ----------KDFCQGD---------------SGGPLVCRHENGPFVLYGIVSWG-AGC- 788

Query: 391 IMPSYPDLYTRVSEYIRWIH 410
           + P  P ++ RV  ++ WI 
Sbjct: 789 VQPWKPGVFARVMIFLDWIQ 808

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q7Z410|TMPS9_HUMAN Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 157 TPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGT 216
           T V ++  HLG   L  L   S V+ G+RRV+ H  ++P +L  D+A+L+L  P+     
Sbjct: 549 TKVEQVRAHLGTASLLGLG-GSPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKY 607

Query: 217 IQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
           IQPVCLP   + F +G++  + GWG T          LQK  V ++    CS +   S+ 
Sbjct: 608 IQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFSLT 667

Query: 276 IGMLCA 281
             M+CA
Sbjct: 668 DRMICA 673

Serase-1 and serase-2 are serine proteases that hydrolyze the peptides N-t-Boc-Gln-Ala-Arg-AMC and N-t-Boc-Gln-Gly-Arg-AMC. In contrast, N-t-Boc-Ala-Phe-Lys-AMC and N-t-Boc-Ala-Pro-Ala-AMC are not significantly hydrolyzed.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P97435|ENTK_MOUSE Enteropeptidase OS=Mus musculus GN=Tmprss15 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 8/138 (5%)

Query: 150  DIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDR 209
            ++D  R T V      LG H  + L     VRR V +++ + H+      NDIA++ L+ 
Sbjct: 880  NLDPTRWTAV------LGLHMQSNLTSPQVVRRVVDQIVINPHYDRRRKVNDIAMMHLEF 933

Query: 210  PVPLTGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
             V  T  IQP+CLP++ + FI G+   + GWG      G     L++ +V ++SN +C  
Sbjct: 934  KVNYTDYIQPICLPEENQIFIPGRTCSIAGWGYDKINAGSTVDVLKEADVPLISNEKCQQ 993

Query: 269  VIEE-SIGIGMLCAAPDE 285
             + E +I   M+CA  +E
Sbjct: 994  QLPEYNITESMICAGYEE 1011

Responsible for initiating activation of pancreatic proteolytic proenzymes (trypsin, chymotrypsin and carboxypeptidase A). It catalyzes the conversion of trypsinogen to trypsin which in turn activates other proenzymes including chymotrypsinogen, procarboxypeptidases, and proelastases.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

>sp|P57727|TMPS3_HUMAN Transmembrane protease serine 3 OS=Homo sapiens GN=TMPRSS3 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGHVVGWGVT 242
           V ++++HS + P  L NDIAL++L  P+     IQPVCLP   E+F  GK     GWG T
Sbjct: 287 VEKIVYHSKYKPKRLGNDIALMKLAGPLTFNEMIQPVCLPNSEENFPDGKVCWTSGWGAT 346

Query: 243 SFPMGEPSPTLQKLEVKVLSNARCS--TVIEESIGIGMLCAA 282
               G+ SP L    V ++SN  C+   V    I   MLCA 
Sbjct: 347 EDGAGDASPVLNHAAVPLISNKICNHRDVYGGIISPSMLCAG 388

Probable serine protease that play a role in hearing. Acts as a permissive factor for cochlear hair cells survival and activation at the onset of hearing and is required for saccular hair cell survival (By similarity). Activates ENaC (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P69525|TMPS9_MOUSE Transmembrane protease serine 9 OS=Mus musculus GN=Tmprss9 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 157 TPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGT 216
           T V ++  HLG   L  +   S V+ G+RRV  H  ++P +L  D+ALL+L +P+     
Sbjct: 551 TKVEQVQAHLGTVSLLGVG-GSPVKLGLRRVALHPRYNPGILDFDVALLELAQPLVFNKY 609

Query: 217 IQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
           IQPVCLP     F +G++  + GWG            LQK  V ++    C  +   S+ 
Sbjct: 610 IQPVCLPLAIHKFPVGRKCMISGWGNMQEGNATKPDILQKASVGIIEQKMCGALYNFSLT 669

Query: 276 IGMLCA 281
             MLCA
Sbjct: 670 DRMLCA 675

Serase-1 and serase-2 are serine proteases that hydrolyze the peptides N-t-Boc-Gln-Ala-Arg-AMC and N-t-Boc-Gln-Gly-Arg-AMC. In contrast, N-t-Boc-Ala-Phe-Lys-AMC and N-t-Boc-Ala-Pro-Ala-AMC are not significantly hydrolyzed.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8K1T0|TMPS3_MOUSE Transmembrane protease serine 3 OS=Mus musculus GN=Tmprss3 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 4/101 (3%)

Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGHVVGWGVT 242
           V ++++HS + P  L NDIAL++L  P+    TIQP+CLP   E+F  GK     GWG T
Sbjct: 287 VEKIIYHSKYKPKRLGNDIALMKLSEPLTFDETIQPICLPNSEENFPDGKLCWTSGWGAT 346

Query: 243 SFPMGEPSPTLQKLEVKVLSNARCS--TVIEESIGIGMLCA 281
               G+ SP L    V ++SN  C+   V    I   MLCA
Sbjct: 347 E-DGGDASPVLNHAAVPLISNKICNHRDVYGGIISPSMLCA 386

Probable serine protease that play a role in hearing. Acts as a permissive factor for cochlear hair cells survival and activation at the onset of hearing and is required for saccular hair cell survival. Activates ENaC (in vitro).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P98073|ENTK_HUMAN Enteropeptidase OS=Homo sapiens GN=TMPRSS15 PE=1 SV=3

 Score = 69.3 bits (168), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           R+   S+    LG H  + L     V R +  ++ + H++     NDIA++ L+  V  T
Sbjct: 830 RNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYT 889

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE- 272
             IQP+CLP++ + F  G+   + GWG   +  G  +  LQ+ +V +LSN RC   + E 
Sbjct: 890 DYIQPICLPEENQVFPPGRNCSIAGWGTVVY-QGTTANILQEADVPLLSNERCQQQMPEY 948

Query: 273 SIGIGMLCAAPDE 285
           +I   M+CA  +E
Sbjct: 949 NITENMICAGYEE 961

Responsible for initiating activation of pancreatic proteolytic proenzymes (trypsin, chymotrypsin and carboxypeptidase A). It catalyzes the conversion of trypsinogen to trypsin which in turn activates other proenzymes including chymotrypsinogen, procarboxypeptidases, and proelastases.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

>sp|O35453|HEPS_MOUSE Serine protease hepsin OS=Mus musculus GN=Hpn PE=2 SV=3

 Score = 68.9 bits (167), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)

Query: 180 VRRGVRRVLFHSHFHPFV------LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GK 232
           V+ GV+ V++H  + PF        SNDIAL+ L   +PLT  IQPVCLP  G++ + GK
Sbjct: 249 VQLGVQAVIYHGGYLPFRDPTIDENSNDIALVHLSSSLPLTEYIQPVCLPAAGQALVDGK 308

Query: 233 RGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
              V GWG T F  G+ +  LQ+  V ++SN  C++
Sbjct: 309 VCTVTGWGNTQF-YGQQAMVLQEARVPIISNEVCNS 343

Plays an essential role in cell growth and maintenance of cell morphology.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
328702116	570	PREDICTED: hypothetical protein LOC10057	0.328	0.240	0.630	5e-47
170035729	580	trypsin [Culex quinquefasciatus] gi|1678	0.498	0.358	0.328	1e-22
328699090	606	PREDICTED: polyserase-2-like [Acyrthosip	0.498	0.343	0.267	1e-16
242019712	420	tripsin, putative [Pediculus humanus cor	0.309	0.307	0.390	3e-16
194668847	955	PREDICTED: transmembrane protease serine	0.541	0.236	0.280	3e-16
148228853	845	matriptase a [Xenopus laevis] gi|4925723	0.364	0.179	0.345	4e-16
9757702	845	homolog of human MT-SP1 [Xenopus laevis]	0.364	0.179	0.345	6e-16
289330258	488	serine protease 70 precursor [Nasonia vi	0.273	0.233	0.401	7e-16
148226471	845	matripase b [Xenopus laevis] gi|52354617	0.364	0.179	0.339	1e-15
270015119	498	serine protease P53 [Tribolium castaneum	0.292	0.244	0.377	2e-15

>gi|328702116|ref|XP_003241807.1| PREDICTED: hypothetical protein LOC100570909 [Acyrthosiphon pisum]

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 114/138 (82%), Gaps = 1/138 (0%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           RDTP+ +L++HLGD+DLT  NET H  R V RVLFHSHFHPF+L+NDIALLQLDRPV  +
Sbjct: 379 RDTPMDDLMVHLGDYDLTSDNETEHQARKVSRVLFHSHFHPFLLANDIALLQLDRPVAAS 438

Query: 215 GTIQPVCLPQK-GESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEES 273
            T++PVC+P   G+S++G++G V+GWG+T+FP G+PSPTL+KL V+VLSN +CS VI++ 
Sbjct: 439 DTVRPVCMPSADGDSYVGQKGTVLGWGITAFPTGDPSPTLKKLSVEVLSNFQCSRVIDDH 498

Query: 274 IGIGMLCAAPDETQGTCF 291
           +G+GMLCAA    QGTCF
Sbjct: 499 VGLGMLCAAAPSLQGTCF 516

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035729|ref|XP_001845720.1| trypsin [Culex quinquefasciatus] gi|167878026|gb|EDS41409.1| trypsin [Culex quinquefasciatus]

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 14/222 (6%)

Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQ 218
            S++ + L DHD +   E   +   V RV+ H+ ++    ++DIA+L L +PV     ++
Sbjct: 161 ASKISVVLLDHDRSSTTEAETITGKVSRVIKHNGYNSNNYNSDIAVLVLQKPVSFNEKLR 220

Query: 219 PVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESIGI 276
           PVCLP   +SF G  G V GWG TS   G+ S  LQ++ V ++SNA C  S   ++ I  
Sbjct: 221 PVCLPDMKKSFTGYDGLVTGWGATS-ENGQVSVNLQEVMVPIMSNADCKKSGYGDKRITD 279

Query: 277 GMLCAA-----PDETQGTCFVPVSPVGYTK--KHLQQFHQGTTYRQPR----RRIILGGE 325
            MLCA       D  QG    P+  +   K  +++ Q     ++   R    +RI+ G E
Sbjct: 280 NMLCAGFAEGKKDSCQGDSGGPLHIINKEKAAENIHQIAGIVSWECGRTNQIKRIVGGME 339

Query: 326 ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
             + +FPW   +     F+CGG+L+ +  V+TAAHC+    P
Sbjct: 340 TRVNQFPWMAILKYGDSFYCGGSLITDRHVMTAAHCVTGFNP 381

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699090|ref|XP_001948051.2| PREDICTED: polyserase-2-like [Acyrthosiphon pisum]

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 119/284 (41%), Gaps = 76/284 (26%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
           +R    S + +  GDHD +   +   + R V  ++ H +F     ++D+ALL+L + VP 
Sbjct: 132 VRKLKKSRIRVIFGDHDQSTTTDGETITRMVSSIVRHRNFDVNSYNHDVALLRLRKAVPF 191

Query: 214 TGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIE 271
           T +++P+CLP       GK G VVGWG  S   G  +  +Q+++V +LS A+C  S    
Sbjct: 192 TKSVRPICLPLATREPSGKVGTVVGWGRVS-EGGNLADVVQEVQVPILSLAQCRASKYRP 250

Query: 272 ESIGIGMLCAAP---DETQGT--------------------------CFVPVSPVGYTK- 301
           + I   M+CA     D  QG                           C  P  P  YT+ 
Sbjct: 251 QRITANMICAGKGVEDSCQGDSGGPLLINSDVDDKLEIVGIVSWGVGCGRPGYPGVYTRV 310

Query: 302 -KHLQQFHQGTT-----------------YRQPRRRIIL------GGEAD---------- 327
            K+L    +                    +R+P  +I +      G E D          
Sbjct: 311 TKYLDWIQKNMRDTCACGHGVRNVFTDFGFRRPTPQIAVNSVIKNGQECDCSCGSPNVDT 370

Query: 328 ---------IGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
                    + E+PW V ++    F+CGG L+N+ +VLTAAHC+
Sbjct: 371 KIVGGDPSGVHEYPWMVRLSYFNQFYCGGTLINDRYVLTAAHCV 414

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019712|ref|XP_002430303.1| tripsin, putative [Pediculus humanus corporis] gi|212515418|gb|EEB17565.1| tripsin, putative [Pediculus humanus corporis]

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 4/133 (3%)

Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
           ++  HL +HD +   E++ + R + +V+ HS ++    +NDIALL++D+ V L  T++PV
Sbjct: 146 KITAHLLEHDRSIDTESTVIERKIEKVIRHSGYNDRTFNNDIALLKMDKEVTLDDTLRPV 205

Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI--EESIGIGM 278
           CLP KG+SF    G V GWGV S   G  SP LQ++ V ++SNA C         I   M
Sbjct: 206 CLPVKGKSFSHYDGLVTGWGVKS-QGGVTSPILQEVTVPIMSNAECKKTKYGSRRITDNM 264

Query: 279 LCAA-PDETQGTC 290
           LCA  P+  +  C
Sbjct: 265 LCAGFPEGKKDAC 277

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194668847|ref|XP_001789629.1| PREDICTED: transmembrane protease serine 9 [Bos taurus]

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 27/253 (10%)

Query: 151 IDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP 210
            ++ +D+P  E V ++G   L+  +E S VR  V R++ H  ++      D+A+L+L RP
Sbjct: 245 FNEFQDSP--EWVAYVGTTYLSG-SEASMVRARVARIITHPSYNSDTADFDVAVLELGRP 301

Query: 211 VPLTGTIQPVCLPQKGESFIGKRGHVV-GWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV 269
           +P +  +QPVCLP     F  ++  ++ GWG            LQK  V++L  A C+++
Sbjct: 302 LPFSRHVQPVCLPAASHIFPPRKKCLISGWGYLKENFLVKPEMLQKATVELLDQALCTSL 361

Query: 270 IEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQ--GTTYRQPRRRIILGGEAD 327
              S+   M+CA                GY    +    +       +   RI+ G  A 
Sbjct: 362 YGHSLTDRMVCA----------------GYLDGKVDSLPECGARPALEKPTRIVGGLGAS 405

Query: 328 IGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM-TGGPLTFEQDGYHVLAGI----V 382
           +GE PWQV++      FCG  ++ + ++L+AAHC   T   L   Q G   L+G+    V
Sbjct: 406 LGEVPWQVSLKEGSRHFCGATVVGDRWLLSAAHCFNHTKVELVRAQLGTASLSGVGGSPV 465

Query: 383 SYGVTGCAIMPSY 395
             G+    + P Y
Sbjct: 466 KVGLRRVVLHPQY 478

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148228853|ref|NP_001081066.1| matriptase a [Xenopus laevis] gi|49257232|gb|AAH71077.1| St14-A-prov protein [Xenopus laevis]

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 150 DIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDR 209
           D  Q+R +  S    +LG HD  QLN    V R ++R++ H  F+     NDIA+L+L++
Sbjct: 650 DDHQMRYSDASLWTAYLGLHDQAQLNTKDVVERKIKRIMAHIGFNDNTYDNDIAVLELEK 709

Query: 210 PVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PV  T  IQPVC+P+    F +GK   V GWG      G  +  LQK E+++++   C+ 
Sbjct: 710 PVEYTDFIQPVCIPESTHDFPVGKPIWVTGWGALK-EGGGAAVILQKAEIRIINQTECNK 768

Query: 269 VIEESIGIGMLCA-----APDETQGTCFVPVSPVGYTKK 302
           +++  +   MLCA       D  QG    P+S V    K
Sbjct: 769 LLDGQLTPRMLCAGFVSGGIDACQGDSGGPLSSVELNNK 807

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|9757702|dbj|BAB08218.1| homolog of human MT-SP1 [Xenopus laevis]

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 150 DIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDR 209
           D  Q+R +  S    +LG HD  QLN    V R ++R++ H  F+     NDIA+L+L++
Sbjct: 650 DDHQMRYSDASLWTAYLGLHDQAQLNTKDVVERRIKRIMAHIGFNDNTYDNDIAVLELEK 709

Query: 210 PVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PV  T  IQPVC+P+    F +GK   V GWG      G  +  LQK E+++++   C+ 
Sbjct: 710 PVEYTDFIQPVCIPESTHDFPVGKPIWVTGWGALK-EGGGAAVILQKAEIRIINQTECNK 768

Query: 269 VIEESIGIGMLCA-----APDETQGTCFVPVSPVGYTKK 302
           +++  +   MLCA       D  QG    P+S V    K
Sbjct: 769 LLDGQLTPRMLCAGFVSGGIDACQGDSGGPLSSVELNNK 807

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|289330258|ref|NP_001166087.1| serine protease 70 precursor [Nasonia vitripennis]

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 3/117 (2%)

Query: 151 IDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP 210
           + Q+    V+ L + LGD+D+   +E  HV + V+RV+ H  F    L ND+A+L L+ P
Sbjct: 296 VAQMNSWDVARLTVRLGDYDIKTPHEVRHVEKRVKRVVRHRGFDMRTLYNDVAILTLNEP 355

Query: 211 VPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSP-TLQKLEVKVLSNARC 266
           V  + TI+PVCLP     + GK+  V+GWG  S   G P+P  LQ++ +K+ SNA C
Sbjct: 356 VEFSETIRPVCLPSGANLYTGKQAVVIGWG--SLREGGPAPGKLQQVSIKIWSNAIC 410

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148226471|ref|NP_001088059.1| matripase b [Xenopus laevis] gi|52354617|gb|AAH82854.1| LOC494753 protein [Xenopus laevis]

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 150 DIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDR 209
           D   +R +  S    +LG HD  QLN  + V R ++R++ H  F+     NDIA+L+L++
Sbjct: 650 DDHSMRYSDASLWTAYLGLHDQAQLNTKNVVERKIKRIMAHIGFNDNTYDNDIAVLELEK 709

Query: 210 PVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PV  T  IQP+C+P+    F +GK   V GWG      G  +  LQK E++V++   C+ 
Sbjct: 710 PVDYTDFIQPICIPESTHDFPVGKPIWVTGWGALK-EGGGAAVILQKAEIRVINQTECNK 768

Query: 269 VIEESIGIGMLCA-----APDETQGTCFVPVSPVGYTKK 302
           +++  +   MLCA       D  QG    P+S V    K
Sbjct: 769 LLDGQLTPRMLCAGFVSGGIDACQGDSGGPLSSVDLNNK 807

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270015119|gb|EFA11567.1| serine protease P53 [Tribolium castaneum]

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQ 218
           V+ L + LGDH++    E  H+ + V+R++ H  F P  L NDIA+L LD PV  +  I+
Sbjct: 314 VARLTVRLGDHNIKTNTEIRHIEKRVKRIVRHRGFDPRTLYNDIAILTLDSPVQFSQQIR 373

Query: 219 PVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIG- 277
           P+CLP  G  F G  G V+GWG       +PS  LQ++ + + SN  C      +   G 
Sbjct: 374 PICLPTVGNDFAGHTGTVIGWGSLRESGPQPS-VLQEVNIPIWSNRDCKLKYGPAAPGGI 432

Query: 278 ---MLCA 281
              MLCA
Sbjct: 433 VDHMLCA 439

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
UNIPROTKB|F1NDZ1	239	TMPRSS15 "Uncharacterized prot	0.285	0.497	0.347	3.1e-21
FB|FBgn0031619	314	CG3355 [Drosophila melanogaste	0.263	0.350	0.408	4.2e-21
FB|FBgn0051728	581	CG31728 [Drosophila melanogast	0.306	0.220	0.373	7.3e-21
ZFIN|ZDB-GENE-030131-1171	459	ctrb1 "chymotrypsinogen B1" [D	0.431	0.392	0.325	7.5e-21
UNIPROTKB|I3LDL1	1047	TMPRSS9 "Uncharacterized prote	0.287	0.114	0.341	1.1e-20
UNIPROTKB|Q7Z410	1059	TMPRSS9 "Transmembrane proteas	0.297	0.117	0.349	1.4e-20
RGD|1309581	1061	Tmprss9 "transmembrane proteas	0.297	0.116	0.325	1.8e-20
FB|FBgn0039272	325	CG11836 [Drosophila melanogast	0.306	0.393	0.365	2.8e-20
UNIPROTKB|Q0IIH7	855	ST14 "Suppressor of tumorigeni	0.314	0.153	0.370	4.2e-20
UNIPROTKB|E1B9Z9	1095	TMPRSS9 "Uncharacterized prote	0.287	0.109	0.341	6.8e-20

UNIPROTKB|F1NDZ1 TMPRSS15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
 Identities = 42/121 (34%), Positives = 66/121 (54%)

Query:   166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
             LG +D + + + S V R + +++ + H++     +DIAL+ L   V  T  IQP+CLP+K
Sbjct:    58 LGLYDQSNMTDASTVVRNIDQIVINPHYNKVTKDSDIALMHLQYEVQYTDYIQPICLPKK 117

Query:   226 GESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE-SIGIGMLCAAP 283
              + F+ G    + GWG  S   G  S  LQ+  V ++SN +C   + E SI   M+CA  
Sbjct:   118 NQQFLPGINCSIAGWGAISSLGGPTSNILQEAVVPLISNEKCQEWLPEYSISKNMICAGY 177

Query:   284 D 284
             D
Sbjct:   178 D 178

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0031619 CG3355 [Drosophila melanogaster (taxid:7227)]

 Score = 202 (76.2 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
 Identities = 47/115 (40%), Positives = 70/115 (60%)

Query:   171 LTQLNETSHVRRGVRRVL---FHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE 227
             L Q++ +S     VR+V+    H ++ P  + ND+ALL+L+ PVPLTG ++PVCLP+   
Sbjct:   132 LLQIDRSSRDPGIVRKVVQTTVHPNYDPNRIVNDVALLKLESPVPLTGNMRPVCLPEANH 191

Query:   228 SFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STVIEESIGIGMLCA 281
             +F GK   V GWG+     G  S  LQ++ V V++NA+C  T  ++ I   MLCA
Sbjct:   192 NFDGKTAVVAGWGLIK-EGGVTSNYLQEVNVPVITNAQCRQTRYKDKIAEVMLCA 245

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0051728 CG31728 [Drosophila melanogaster (taxid:7227)]

 Score = 212 (79.7 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
 Identities = 53/142 (37%), Positives = 76/142 (53%)

Query:   159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQ 218
             V+ L  HLGD+++    E  HV R ++R++ H  F    L ND+A+L L  PVP T  IQ
Sbjct:   392 VAALTAHLGDYNIGTDFEVQHVSRRIKRLVRHKGFEFSTLHNDVAILTLSEPVPFTREIQ 451

Query:   219 PVCLP----QKGESFIGKRGHVVGWGVTSFPMGEPSPT-LQKLEVKVLSNARCSTVIEES 273
             P+CLP    Q+  S+ G+   V GWG  S     P P+ LQK+++ + +NA C+     +
Sbjct:   452 PICLPTSPSQQSRSYSGQVATVAGWG--SLRENGPQPSILQKVDIPIWTNAECARKYGRA 509

Query:   274 I--GI--GMLCA---APDETQG 288
                GI   M+CA   A D   G
Sbjct:   510 APGGIIESMICAGQAAKDSCSG 531

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

ZFIN|ZDB-GENE-030131-1171 ctrb1 "chymotrypsinogen B1" [Danio rerio (taxid:7955)]

 Score = 226 (84.6 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
 Identities = 66/203 (32%), Positives = 96/203 (47%)

Query:   166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
             LG+HD +   E       V +V  H +F+ F ++NDI L++L  P  +   + PVCL + 
Sbjct:    86 LGEHDRSSNAEPIQTMT-VGKVFKHPNFNMFTINNDILLIKLATPAKINTHVSPVCLAET 144

Query:   226 GESFIGKRGHVV-GWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPD 284
              ++F G    V  GWG+T     +    LQ+  + +L+N  C       I   M+CA   
Sbjct:   145 NDNFPGGMKCVTSGWGLTKHNAPDTPALLQQAALPLLTNEDCKRFWGNKITDLMVCAGAS 204

Query:   285 ETQGT-----CFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIA- 338
                       C VP  P   T         G  Y     RI+ G EA    +PWQV++  
Sbjct:   205 GASSCMGDSGCGVPAIPPVVT---------G--YA----RIVNGEEARPHSWPWQVSLQD 249

Query:   339 LDGMFFCGGALLNEHFVLTAAHC 361
               G  FCGG+L+NE++V+TAAHC
Sbjct:   250 STGFHFCGGSLINENWVVTAAHC 272

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|I3LDL1 TMPRSS9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 184 (69.8 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
 Identities = 42/123 (34%), Positives = 67/123 (54%)

Query:   161 ELV-LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             ELV  HLG   L+ ++  S V+ G+RR + H  ++P +L  D+A+L+L RP+     +QP
Sbjct:   540 ELVRAHLGTTSLSGISG-SPVKMGLRRAVLHPQYNPSILDFDVAVLELARPLVFNKYVQP 598

Query:   220 VCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
             VCLP   + F +G++  + GWG T          LQ+  V ++    CS +   S+   M
Sbjct:   599 VCLPLAIQKFPVGRKCMISGWGNTQEGNATKPDILQRASVGIIDQKACSALYNFSLTDRM 658

Query:   279 LCA 281
             +CA
Sbjct:   659 ICA 661

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q7Z410 TMPRSS9 "Transmembrane protease serine 9" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
 Identities = 44/126 (34%), Positives = 66/126 (52%)

Query:   157 TPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGT 216
             T V ++  HLG   L  L   S V+ G+RRV+ H  ++P +L  D+A+L+L  P+     
Sbjct:   549 TKVEQVRAHLGTASLLGLGG-SPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKY 607

Query:   217 IQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
             IQPVCLP   + F +G++  + GWG T          LQK  V ++    CS +   S+ 
Sbjct:   608 IQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFSLT 667

Query:   276 IGMLCA 281
               M+CA
Sbjct:   668 DRMICA 673

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1309581 Tmprss9 "transmembrane protease, serine 9" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
 Identities = 41/126 (32%), Positives = 62/126 (49%)

Query:   157 TPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGT 216
             T + ++  HLG   L  +   S V+ G+R V  H  ++P +L  D+ALL+L +P+     
Sbjct:   551 TKLEQVQAHLGTVSLLGVGG-SPVKLGLRSVALHPRYNPGILDFDVALLELAQPLVFNKY 609

Query:   217 IQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
             IQPVCLP     F +G++  + GWG            LQK  V ++    C  +   S+ 
Sbjct:   610 IQPVCLPLAIHKFPVGRKCMISGWGNMQEGNATKPDILQKASVGIIEQKMCGALYNFSLT 669

Query:   276 IGMLCA 281
               MLCA
Sbjct:   670 DRMLCA 675

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0039272 CG11836 [Drosophila melanogaster (taxid:7227)]

 Score = 195 (73.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 49/134 (36%), Positives = 73/134 (54%)

Query:   160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             S++ +  GDHD    +E+  ++R V  V+ H  F P   +NDIALL+L +P+  +  I+P
Sbjct:   137 SKIRVIFGDHDQEITSESQAIQRAVTAVIKHKSFDPDTYNNDIALLRLRKPISFSKIIKP 196

Query:   220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGI--G 277
             +CLP+      G+ G VVGWG TS   GE    + +++V ++S   C     +S  I   
Sbjct:   197 ICLPRYNYDPAGRIGTVVGWGRTS-EGGELPSIVNQVKVPIMSITECRNQRYKSTRITSS 255

Query:   278 MLCAA-P--DETQG 288
             MLCA  P  D  QG
Sbjct:   256 MLCAGRPSMDSCQG 269

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

UNIPROTKB|Q0IIH7 ST14 "Suppressor of tumorigenicity 14 protein homolog" [Bos taurus (taxid:9913)]

 Score = 214 (80.4 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
 Identities = 50/135 (37%), Positives = 73/135 (54%)

Query:   149 CDIDQ--LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ 206
             C +D    R +  S     LG HD ++ N      RG++R++ H  F+ F    DIALLQ
Sbjct:   657 CFVDDRGFRYSEHSVWTAFLGLHDQSKRNAPGVQERGLQRIIKHPFFNDFTFDYDIALLQ 716

Query:   207 LDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNAR 265
             LDRPV  + TI+P+CLP    +F  GK   V GWG T    G+ +  LQK E++V++   
Sbjct:   717 LDRPVEYSATIRPICLPAADYTFPTGKAIWVTGWGHTQ-EAGQGAMILQKGEIRVINQTT 775

Query:   266 CSTVIEESIGIGMLC 280
             C  ++ + I   M+C
Sbjct:   776 CEHLLPQQITPRMIC 790

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|E1B9Z9 TMPRSS9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 6.8e-20, Sum P(3) = 6.8e-20
 Identities = 42/123 (34%), Positives = 67/123 (54%)

Query:   161 ELV-LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             ELV   LG   L+ +   S V+ G+RRV+ H  ++P +L  D+A+L+L RP+     +QP
Sbjct:   586 ELVRAQLGTASLSGVGG-SPVKVGLRRVVLHPQYNPSILDFDVAVLELARPLVFNKYVQP 644

Query:   220 VCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
             VCLP   + F +G++  + GWG T          LQ+  V ++ +  CS +   S+   M
Sbjct:   645 VCLPLAIQKFPVGRKCVISGWGNTQEGNATKPDLLQQASVGIIDHKACSALYNFSLTDRM 704

Query:   279 LCA 281
             +CA
Sbjct:   705 ICA 707

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	417
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	6e-28
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	1e-27
pfam00089	218	pfam00089, Trypsin, Trypsin	4e-19
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	3e-14
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	4e-14
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	2e-10
pfam00089	218	pfam00089, Trypsin, Trypsin	5e-10
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	2e-09
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	9e-06
pfam00089	218	pfam00089, Trypsin, Trypsin	4e-04

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  110 bits (276), Expect = 6e-28
 Identities = 50/141 (35%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
           +  +  S   + LG HDL+  NE       V++V+ H +++P    NDIALL+L RPV L
Sbjct: 44  VYSSAPSNYTVRLGSHDLSS-NEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTL 102

Query: 214 TGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
           +  ++P+CLP  G +   G    V GWG TS   G     LQ++ V ++SNA C      
Sbjct: 103 SDNVRPICLPSSGYNLPAGTTCTVSGWGRTS-EGGPLPDVLQEVNVPIVSNAECKRAYSY 161

Query: 273 SIGI--GMLCAAPDET-QGTC 290
              I   MLCA   E  +  C
Sbjct: 162 GGTITDNMLCAGGLEGGKDAC 182

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  108 bits (273), Expect = 1e-27
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 6/141 (4%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
           +R +  S + + LG HDL+  +        V +V+ H +++P    NDIALL+L  PV L
Sbjct: 45  VRGSDPSNIRVRLGSHDLS--SGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTL 102

Query: 214 TGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
           +  ++P+CLP    +   G    V GWG TS   G    TLQ++ V ++SNA C      
Sbjct: 103 SDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSG 162

Query: 273 SIGI--GMLCA-APDETQGTC 290
              I   MLCA   +  +  C
Sbjct: 163 GGAITDNMLCAGGLEGGKDAC 183

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 85.2 bits (211), Expect = 4e-19
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           LG H++  L E    +  V++V+ H +++P    NDIALL+L  PV L  T++P+CLP  
Sbjct: 54  LGAHNI-VLREGGEQKFDVKKVIVHPNYNPDTD-NDIALLKLKSPVTLGDTVRPICLPTA 111

Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPD 284
                +G    V GWG T         TLQ++ V V+S   C +    ++   M+CA   
Sbjct: 112 SSDLPVGTTCTVSGWGNTKT--LGLPDTLQEVTVPVVSRETCRSAYGGTVTDNMICAGAG 169

Query: 285 ETQGTCF 291
             +  C 
Sbjct: 170 G-KDACQ 175

Length = 218

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 7/62 (11%)

Query: 321 ILGG-EADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
           I+GG EA IG FPWQV++    G  FCGG+L++  +VLTAAHC+ +  P       Y V 
Sbjct: 1   IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAP-----SNYTVR 55

Query: 379 AG 380
            G
Sbjct: 56  LG 57

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)

Query: 319 RIILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIM 363
           RI+ G EA+IG FPWQV++    G  FCGG+L++  +VLTAAHC+ 
Sbjct: 1   RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVR 46

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    +G  VL GIVS+G  GCA  P+YP +YTRVS Y+ WI 
Sbjct: 187 GGPLVCNDNGRGVLVGIVSWGS-GCAR-PNYPGVYTRVSSYLDWIQ 230

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 25/44 (56%), Positives = 35/44 (79%), Gaps = 2/44 (4%)

Query: 321 ILGG-EADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCI 362
           I+GG EA  G FPWQV++ +  G  FCGG+L++E++VLTAAHC+
Sbjct: 1   IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCV 44

Length = 218

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
           GGPL    DG  VL GIVS+G  GCA  P  P +YTRVS Y+ WI
Sbjct: 188 GGPLVC-NDGRWVLVGIVSWGS-GCA-RPGKPGVYTRVSSYLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 319 RIILGGEADIGEFPWQVAIALDG-----MFFCGGALLNEHFVLTAAHCIMTGGPLT 369
           RII G  A+ GE+P  VA+           FCGG+ L   +VLTAAHC     P++
Sbjct: 32  RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPIS 87

Length = 413

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 5/46 (10%)

Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
           +GGPL    DG   L GIVS+G  GCA   +YP +YT VS Y+ WI
Sbjct: 178 SGGPL-VCSDGE--LIGIVSWGY-GCAS-GNYPGVYTPVSSYLDWI 218

Length = 218

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	100.0
KOG3627|consensus	256		100.0
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	100.0
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	100.0
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.95
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	99.52
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	99.23
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	98.82
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	98.77
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	98.73
KOG3627|consensus	256		98.56
COG5640	413	Secreted trypsin-like serine protease [Posttransla	98.46
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	98.2
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.56
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	97.01
PRK10898	353	serine endoprotease; Provisional	96.88
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	96.88
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	96.7
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	96.61
PRK10139	455	serine endoprotease; Provisional	96.5
PRK10942	473	serine endoprotease; Provisional	96.42
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	94.61
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	93.26
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	87.07
PF00947	127	Pico_P2A: Picornavirus core protein 2A; InterPro:	80.45

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=100.00  E-value=2.7e-39  Score=301.00  Aligned_cols=224  Identities=35%  Similarity=0.628  Sum_probs=195.7

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      +++|.++.++   +|||+|.+..    +.|+||||+++|||||   |||+.+..    ...+.|++|..+...... ..+
T Consensus         1 i~~G~~~~~~---~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTa---AhC~~~~~----~~~~~v~~g~~~~~~~~~-~~~   69 (232)
T cd00190           1 IVGGSEAKIG---SFPWQVSLQYTGGRHFCGGSLISPRWVLTA---AHCVYSSA----PSNYTVRLGSHDLSSNEG-GGQ   69 (232)
T ss_pred             CcCCeECCCC---CCCCEEEEEccCCcEEEEEEEeeCCEEEEC---HHhcCCCC----CccEEEEeCcccccCCCC-ceE
Confidence            3577777776   5999999953    5999999999999999   99997642    467999999988765443 567


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      .+.|.++++||+|+.....+|||||||++|+.++++++|||||...... .+..+.++|||.+.... ..+..|++..+.
T Consensus        70 ~~~v~~~~~hp~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~~~-~~~~~~~~~~~~  148 (232)
T cd00190          70 VIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGG-PLPDVLQEVNVP  148 (232)
T ss_pred             EEEEEEEEECCCCCCCCCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEEEEEeCCcCCCCC-CCCceeeEEEee
Confidence            8889999999999998889999999999999999999999999985333 78999999999987653 467889999999


Q ss_pred             EeChhhhhhhhh--ccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        260 VLSNARCSTVIE--ESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       260 i~~~~~C~~~~~--~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +++...|...+.  ..+.+.+||+.... ..+.|.|                                            
T Consensus       149 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~g--------------------------------------------  184 (232)
T cd00190         149 IVSNAECKRAYSYGGTITDNMLCAGGLEGGKDACQG--------------------------------------------  184 (232)
T ss_pred             eECHHHhhhhccCcccCCCceEeeCCCCCCCccccC--------------------------------------------
Confidence            999999998886  47889999999887 7889999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhh
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN  412 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~  412 (417)
                                                |+||||++..+++++|+||+|+| ..|. ..+.|.+||+|+.|++||+++
T Consensus       185 --------------------------dsGgpl~~~~~~~~~lvGI~s~g-~~c~-~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         185 --------------------------DSGGPLVCNDNGRGVLVGIVSWG-SGCA-RPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             --------------------------CCCCcEEEEeCCEEEEEEEEehh-hccC-CCCCCCEEEEcHHhhHHhhcC
Confidence                                      99999999989999999999999 6798 558999999999999999874

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=100.00  E-value=2.2e-38  Score=302.06  Aligned_cols=230  Identities=33%  Similarity=0.599  Sum_probs=194.3

Q ss_pred             eEecCCCCCCCCCCCCCcceeeEc-----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        103 YFKSPHHPARPSSGLTCDYDVAIR-----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       103 ~~~~~g~~a~~~~~~~~PW~v~i~-----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      .++++|.++.++   .+||++.+.     .++|+|+||+++|||||   |||+.+..   .. .+.|++|.++.......
T Consensus        11 ~~i~~g~~~~~~---~~Pw~~~l~~~~~~~~~Cggsli~~~~vlta---aHC~~~~~---~~-~~~V~~G~~~~~~~~~~   80 (256)
T KOG3627|consen   11 GRIVGGTEAEPG---SFPWQVSLQYGGNGRHLCGGSLISPRWVLTA---AHCVKGAS---AS-LYTVRLGEHDINLSVSE   80 (256)
T ss_pred             CCEeCCccCCCC---CCCCEEEEEECCCcceeeeeEEeeCCEEEEC---hhhCCCCC---Cc-ceEEEECcccccccccc
Confidence            478889888888   499999984     35999999999999999   99997642   11 78999998866654221


Q ss_pred             Cc--EEEeeeEEEeCCCCCCCCCC-CCeEEEEecCCcCCCCceeeeeCCCCCC---ccCCCeEEEEEcCccCCCCCCCCc
Q psy15063        178 SH--VRRGVRRVLFHSHFHPFVLS-NDIALLQLDRPVPLTGTIQPVCLPQKGE---SFIGKRGHVVGWGVTSFPMGEPSP  251 (417)
Q Consensus       178 ~~--q~~~V~~i~iHP~Y~~~~~~-nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GWG~~~~~~~~~~~  251 (417)
                      ..  ....|.++++||+|+..... ||||||+|.+++.|+++|+|||||....   ...+..|+++|||.+.......+.
T Consensus        81 ~~~~~~~~v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~  160 (256)
T KOG3627|consen   81 GEEQLVGDVEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPLPD  160 (256)
T ss_pred             CchhhhceeeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCCCc
Confidence            22  45558889999999998888 9999999999999999999999985544   225689999999999876335789


Q ss_pred             cceEEEEEEeChhhhhhhhhc--cCCCCeEEecCC-CCCCCccCCCCCcccccccccccccCccccCCcceeeccccccc
Q psy15063        252 TLQKLEVKVLSNARCSTVIEE--SIGIGMLCAAPD-ETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADI  328 (417)
Q Consensus       252 ~L~~~~v~i~~~~~C~~~~~~--~~~~~~iCa~~~-~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~  328 (417)
                      .||++++++++...|+..+..  .+++.||||+.. .+.++|+|                                    
T Consensus       161 ~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G------------------------------------  204 (256)
T KOG3627|consen  161 TLQEVDVPIISNSECRRAYGGLGTITDTMLCAGGPEGGKDACQG------------------------------------  204 (256)
T ss_pred             eeEEEEEeEcChhHhcccccCccccCCCEEeeCccCCCCccccC------------------------------------
Confidence            999999999999999998876  477789999984 47889999                                    


Q ss_pred             ccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCC-ccccCCCCeEEEecccchh
Q psy15063        329 GEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTG-CAIMPSYPDLYTRVSEYIR  407 (417)
Q Consensus       329 ~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~-C~~~~~~p~vyt~Vs~~~~  407 (417)
                                                        ||||||++..+++++++||+||| .+ |+ ..+.|++||+|+.|.+
T Consensus       205 ----------------------------------DSGGPLv~~~~~~~~~~GivS~G-~~~C~-~~~~P~vyt~V~~y~~  248 (256)
T KOG3627|consen  205 ----------------------------------DSGGPLVCEDNGRWVLVGIVSWG-SGGCG-QPNYPGVYTRVSSYLD  248 (256)
T ss_pred             ----------------------------------CCCCeEEEeeCCcEEEEEEEEec-CCCCC-CCCCCeEEeEhHHhHH
Confidence                                              99999999887689999999999 55 99 6679999999999999


Q ss_pred             HHhhhhc
Q psy15063        408 WIHVNAI  414 (417)
Q Consensus       408 WI~~~~~  414 (417)
                      ||++.+.
T Consensus       249 WI~~~~~  255 (256)
T KOG3627|consen  249 WIKENIG  255 (256)
T ss_pred             HHHHHhc
Confidence            9999875

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=100.00  E-value=9.5e-36  Score=277.67  Aligned_cols=220  Identities=35%  Similarity=0.602  Sum_probs=190.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEccc----cceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQD----VCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~~----~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      +++|.++.+.   +|||++.+...    .|+||||++++||||   |||+.+..    ...+.|++|.++......  .+
T Consensus         2 ~~~G~~~~~~---~~Pw~~~i~~~~~~~~C~GtlIs~~~VLTa---ahC~~~~~----~~~~~v~~g~~~~~~~~~--~~   69 (229)
T smart00020        2 IVGGSEANIG---SFPWQVSLQYRGGRHFCGGSLISPRWVLTA---AHCVYGSD----PSNIRVRLGSHDLSSGEE--GQ   69 (229)
T ss_pred             ccCCCcCCCC---CCCcEEEEEEcCCCcEEEEEEecCCEEEEC---HHHcCCCC----CcceEEEeCcccCCCCCC--ce
Confidence            5678888777   59999998544    699999999999999   99997642    367999999987765332  27


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      .+.|.++++||+|+.....+|||||+|++|+.+++.++|||||...... .+..+.++|||.........+..++...+.
T Consensus        70 ~~~v~~~~~~p~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~  149 (229)
T smart00020       70 VIKVSKVIIHPNYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVP  149 (229)
T ss_pred             EEeeEEEEECCCCCCCCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCCCCCcCCCEeeEEEEE
Confidence            7889999999999988889999999999999999999999999874333 789999999999875333467789999999


Q ss_pred             EeChhhhhhhhhc--cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        260 VLSNARCSTVIEE--SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       260 i~~~~~C~~~~~~--~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +++...|...+..  .+.+.++|++... ..+.|.|                                            
T Consensus       150 ~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~g--------------------------------------------  185 (229)
T smart00020      150 IVSNATCRRAYSGGGAITDNMLCAGGLEGGKDACQG--------------------------------------------  185 (229)
T ss_pred             EeCHHHhhhhhccccccCCCcEeecCCCCCCcccCC--------------------------------------------
Confidence            9999999988765  5889999999887 7889999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                                                |+||||++..+ +|+|+||+|+| ..|. ..+.|.+|+||+.|++||
T Consensus       186 --------------------------dsG~pl~~~~~-~~~l~Gi~s~g-~~C~-~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      186 --------------------------DSGGPLVCNDG-RWVLVGIVSWG-SGCA-RPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             --------------------------CCCCeeEEECC-CEEEEEEEEEC-CCCC-CCCCCCEEEEeccccccC
Confidence                                      99999999766 89999999999 6998 778999999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=4.5e-34  Score=263.97  Aligned_cols=215  Identities=34%  Similarity=0.629  Sum_probs=184.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      |++|.++.++   +|||++.+..    ++|+|+||+++|||||   |||+..      ...+.+++|......... ..+
T Consensus         1 i~~g~~~~~~---~~p~~v~i~~~~~~~~C~G~li~~~~vLTa---ahC~~~------~~~~~v~~g~~~~~~~~~-~~~   67 (220)
T PF00089_consen    1 IVGGDPASPG---EFPWVVSIRYSNGRFFCTGTLISPRWVLTA---AHCVDG------ASDIKVRLGTYSIRNSDG-SEQ   67 (220)
T ss_dssp             SBSSEECGTT---SSTTEEEEEETTTEEEEEEEEEETTEEEEE---GGGHTS------GGSEEEEESESBTTSTTT-TSE
T ss_pred             CCCCEECCCC---CCCeEEEEeeCCCCeeEeEEeccccccccc---cccccc------cccccccccccccccccc-ccc
Confidence            4567777777   5999999944    4699999999999999   999975      367899999854444333 458


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      .+.|++++.||+|+.....+|||||+|++|+.+.+.++|+||+...... .+..+.+.|||......  .+..++...+.
T Consensus        68 ~~~v~~~~~h~~~~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~~~  145 (220)
T PF00089_consen   68 TIKVSKIIIHPKYDPSTYDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDNG--YSSNLQSVTVP  145 (220)
T ss_dssp             EEEEEEEEEETTSBTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTTS--BTSBEEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence            8999999999999998889999999999999999999999999954432 78999999999966443  56789999999


Q ss_pred             EeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        260 VLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       260 i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      +++...|...+...+.+.++|+......+.|.|                                               
T Consensus       146 ~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~g-----------------------------------------------  178 (220)
T PF00089_consen  146 VVSRKTCRSSYNDNLTPNMICAGSSGSGDACQG-----------------------------------------------  178 (220)
T ss_dssp             EEEHHHHHHHTTTTSTTTEEEEETTSSSBGGTT-----------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc-----------------------------------------------
Confidence            999999999866568899999998556789999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                                             |+||||++.  +. +|+||+|++ ..|. ..+.|.+|+||+.|++||
T Consensus       179 -----------------------~sG~pl~~~--~~-~lvGI~s~~-~~c~-~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  179 -----------------------DSGGPLICN--NN-YLVGIVSFG-ENCG-SPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             -----------------------TTTSEEEET--TE-EEEEEEEEE-SSSS-BTTSEEEEEEGGGGHHHH
T ss_pred             -----------------------ccccccccc--ee-eecceeeec-CCCC-CCCcCEEEEEHHHhhccC
Confidence                                   999999994  44 899999999 9999 666799999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.5e-27  Score=226.92  Aligned_cols=228  Identities=22%  Similarity=0.299  Sum_probs=172.7

Q ss_pred             ceeEecCCCCCCCCCCCCCcceeeEcc--------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCC
Q psy15063        101 VTYFKSPHHPARPSSGLTCDYDVAIRQ--------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLT  172 (417)
Q Consensus       101 ~~~~~~~g~~a~~~~~~~~PW~v~i~~--------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~  172 (417)
                      ...+|++|..|..+   +||.+|++..        .+|||+++..||||||   |||+.... .......+|..+..+.+
T Consensus        29 vs~rIigGs~Anag---~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTA---AHC~~~~s-~is~d~~~vv~~l~d~S  101 (413)
T COG5640          29 VSSRIIGGSNANAG---EYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTA---AHCADASS-PISSDVNRVVVDLNDSS  101 (413)
T ss_pred             cceeEecCcccccc---cCchHHHHHhhcccccceeEeccceecceEEeee---hhhccCCC-CccccceEEEecccccc
Confidence            34688999988888   6999998832        2999999999999999   99998764 33334455555554443


Q ss_pred             CCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-----CCCeEEEEEcCccCCCCC
Q psy15063        173 QLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-----IGKRGHVVGWGVTSFPMG  247 (417)
Q Consensus       173 ~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-----~~~~~~v~GWG~~~~~~~  247 (417)
                           ..+...|.+++.|..|.+.++.||||+++|.++...- .+ .|-.-...+.+     ......+.+||.+.....
T Consensus       102 -----q~~rg~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~p-r~-ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v  174 (413)
T COG5640         102 -----QAERGHVRTIYVHEFYSPGNLGNDIAVLELARAASLP-RV-KITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDV  174 (413)
T ss_pred             -----cccCcceEEEeeecccccccccCcceeeccccccccc-hh-heeeccCcccceecccccccccceeeeeeeecCC
Confidence                 3566779999999999999999999999999976532 11 11121221111     345566778887764321


Q ss_pred             C-C---CccceEEEEEEeChhhhhhhhhc------cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCc
Q psy15063        248 E-P---SPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPR  317 (417)
Q Consensus       248 ~-~---~~~L~~~~v~i~~~~~C~~~~~~------~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~  317 (417)
                      + .   ...|+++.+...+-.+|.+.+..      ...-+-||++.. .+++|+|                         
T Consensus       175 ~~~~p~gt~l~e~~v~fv~~stc~~~~g~an~~dg~~~lT~~cag~~-~~daCqG-------------------------  228 (413)
T COG5640         175 PRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRP-PKDACQG-------------------------  228 (413)
T ss_pred             CCCCCccceeeeeeeeeechHHhhhhccccccCCCCCCccceecCCC-CcccccC-------------------------
Confidence            1 1   24799999999999999988752      222334999988 5999999                         


Q ss_pred             ceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCe
Q psy15063        318 RRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPD  397 (417)
Q Consensus       318 ~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~  397 (417)
                                                                   |||||++.+.+.-.+++||+|||+.+|+ ....|+
T Consensus       229 ---------------------------------------------DSGGPi~~~g~~G~vQ~GVvSwG~~~Cg-~t~~~g  262 (413)
T COG5640         229 ---------------------------------------------DSGGPIFHKGEEGRVQRGVVSWGDGGCG-GTLIPG  262 (413)
T ss_pred             ---------------------------------------------CCCCceEEeCCCccEEEeEEEecCCCCC-CCCcce
Confidence                                                         9999999987555789999999977799 999999


Q ss_pred             EEEecccchhHHhhhhc
Q psy15063        398 LYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       398 vyt~Vs~~~~WI~~~~~  414 (417)
                      |||+|+.|.+||...|.
T Consensus       263 VyT~vsny~~WI~a~~~  279 (413)
T COG5640         263 VYTNVSNYQDWIAAMTN  279 (413)
T ss_pred             eEEehhHHHHHHHHHhc
Confidence            99999999999998764

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=99.52  E-value=5.9e-13  Score=129.02  Aligned_cols=223  Identities=18%  Similarity=0.293  Sum_probs=135.7

Q ss_pred             cCCCCccccccceeEecCCCCCCCCCCCCCcceeeEccc-------cceEEEeeCCeEEeeccceeeecCCCCC----CC
Q psy15063         90 TYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIRQD-------VCAVRIEFEKVNLARKVGGVCDIDQLRD----TP  158 (417)
Q Consensus        90 ~~~CG~~~~~~~~~~~~~g~~a~~~~~~~~PW~v~i~~~-------~C~GtLIs~~~VLTA~~~A~Cv~~~~~~----~~  158 (417)
                      ...||.. ..+......+|..+...   +.||.+.+...       +++|||||+||||||   +||+......    ..
T Consensus        28 l~~CG~~-~~~~~~~~~~g~~~~~~---~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLts---s~~~~~~~~~W~~~~~  100 (282)
T PF03761_consen   28 LETCGKK-KLPYPSKVFNGTPAESG---EAPWAVSVYTKNHNEGNYFSTGTLISPRHILTS---SHCVMNDKSKWLNGEE  100 (282)
T ss_pred             HHhcCCC-CCCCcccccCCcccccC---CCCCEEEEEeccCcccceecceEEeccCeEEEe---eeEEEecccccccCcc
Confidence            3668822 12222222455555544   47888877332       579999999999999   9999743220    00


Q ss_pred             -----c--c--ceEEE---eceecC---CCCCCCCcEEEeeeEEEeCCC----CCCCCCCCCeEEEEecCCcCCCCceee
Q psy15063        159 -----V--S--ELVLH---LGDHDL---TQLNETSHVRRGVRRVLFHSH----FHPFVLSNDIALLQLDRPVPLTGTIQP  219 (417)
Q Consensus       159 -----~--~--~~~V~---lG~~~~---~~~~~~~~q~~~V~~i~iHP~----Y~~~~~~nDIALLkL~~pv~~s~~v~P  219 (417)
                           .  .  .+.|-   +-....   ............|.++++--.    .......++++||+|+++  ++....|
T Consensus       101 ~~~~~C~~~~~~l~vP~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~  178 (282)
T PF03761_consen  101 FDNKKCEGNNNHLIVPEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSP  178 (282)
T ss_pred             cccceeeCCCceEEeCHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCC
Confidence                 0  0  11110   000000   000000223345666655311    123445689999999999  7888999


Q ss_pred             eeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcc
Q psy15063        220 VCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVG  298 (417)
Q Consensus       220 icLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~  298 (417)
                      +|||...... .++...+.|+   .     ....+....+.+.....|         ...+|.    .+..|.+      
T Consensus       179 ~Cl~~~~~~~~~~~~~~~yg~---~-----~~~~~~~~~~~i~~~~~~---------~~~~~~----~~~~~~~------  231 (282)
T PF03761_consen  179 PCLADSSTNWEKGDEVDVYGF---N-----STGKLKHRKLKITNCTKC---------AYSICT----KQYSCKG------  231 (282)
T ss_pred             EEeCCCccccccCceEEEeec---C-----CCCeEEEEEEEEEEeecc---------ceeEec----ccccCCC------
Confidence            9999876654 6667777776   1     223455555555432221         122333    4577888      


Q ss_pred             cccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEE
Q psy15063        299 YTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL  378 (417)
Q Consensus       299 ~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l  378 (417)
                                                                                      |+||||+...+|+++|
T Consensus       232 ----------------------------------------------------------------d~Gg~lv~~~~gr~tl  247 (282)
T PF03761_consen  232 ----------------------------------------------------------------DRGGPLVKNINGRWTL  247 (282)
T ss_pred             ----------------------------------------------------------------CccCeEEEEECCCEEE
Confidence                                                                            9999999999999999


Q ss_pred             EeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        379 AGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       379 ~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                      +||.+.+...|.  . ....|.+|..|.+=|-+.+++
T Consensus       248 IGv~~~~~~~~~--~-~~~~f~~v~~~~~~IC~ltGI  281 (282)
T PF03761_consen  248 IGVGASGNYECN--K-NNSYFFNVSWYQDEICELTGI  281 (282)
T ss_pred             EEEEccCCCccc--c-cccEEEEHHHhhhhhccceec
Confidence            999998844554  2 267899999998877666553

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.23  E-value=2.4e-10  Score=104.88  Aligned_cols=112  Identities=16%  Similarity=0.136  Sum_probs=86.9

Q ss_pred             CCcceeeEccc---cceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecC-CCCCCCCcEEEeeeEEEeCCCC
Q psy15063        118 TCDYDVAIRQD---VCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDL-TQLNETSHVRRGVRRVLFHSHF  193 (417)
Q Consensus       118 ~~PW~v~i~~~---~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~-~~~~~~~~q~~~V~~i~iHP~Y  193 (417)
                      .|||.+.|+..   .|.|+||.+.|||++   ..|+.+-..  ...-+.|.+|.... .....+.+|.++|..+..=|  
T Consensus        15 ~WPWlA~IYvdG~~~CsgvLlD~~WlLvs---ssCl~~I~L--~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V~--   87 (267)
T PF09342_consen   15 HWPWLADIYVDGRYWCSGVLLDPHWLLVS---SSCLRGISL--SHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDVP--   87 (267)
T ss_pred             cCcceeeEEEcCeEEEEEEEeccceEEEe---ccccCCccc--ccceEEEEecCcceecccCCChheEEEeeeeeecc--
Confidence            59999999544   999999999999999   999965221  23567889997652 22244478888888876543  


Q ss_pred             CCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCc
Q psy15063        194 HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGV  241 (417)
Q Consensus       194 ~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~  241 (417)
                           ..+++||.|++|+.|+.+|+|..||+..... ....|...|-..
T Consensus        88 -----~S~v~LLHL~~~~~fTr~VlP~flp~~~~~~~~~~~CVAVg~d~  131 (267)
T PF09342_consen   88 -----ESNVLLLHLEQPANFTRYVLPTFLPETSNENESDDECVAVGHDD  131 (267)
T ss_pred             -----ccceeeeeecCcccceeeecccccccccCCCCCCCceEEEEccc
Confidence                 3689999999999999999999999844433 566899888554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=98.82  E-value=2.7e-09  Score=98.78  Aligned_cols=45  Identities=53%  Similarity=1.119  Sum_probs=41.7

Q ss_pred             eecccccccccCCcEEEEccC-CeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~-~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +++|..+..++|||++.++.. ..+.|+||||+++||||||||+..
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhC~~~   46 (232)
T cd00190           1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYS   46 (232)
T ss_pred             CcCCeECCCCCCCCEEEEEccCCcEEEEEEEeeCCEEEECHHhcCC
Confidence            478999999999999999887 789999999999999999999954

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.77  E-value=6.6e-09  Score=95.53  Aligned_cols=45  Identities=49%  Similarity=0.947  Sum_probs=42.6

Q ss_pred             eecccccccccCCcEEEEccCC-eeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDG-MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~-~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |.+|.++..++|||++.++... .++|.|+||+++||||||||++.
T Consensus         1 i~~g~~~~~~~~p~~v~i~~~~~~~~C~G~li~~~~vLTaahC~~~   46 (220)
T PF00089_consen    1 IVGGDPASPGEFPWVVSIRYSNGRFFCTGTLISPRWVLTAAHCVDG   46 (220)
T ss_dssp             SBSSEECGTTSSTTEEEEEETTTEEEEEEEEEETTEEEEEGGGHTS
T ss_pred             CCCCEECCCCCCCeEEEEeeCCCCeeEeEEeccccccccccccccc
Confidence            5789999999999999999887 99999999999999999999977

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=98.73  E-value=7.5e-09  Score=96.09  Aligned_cols=48  Identities=52%  Similarity=1.077  Sum_probs=43.4

Q ss_pred             eeecccccccccCCcEEEEccCC-eeeeeeEEecCceeeeccccccCCC
Q psy15063        319 RIILGGEADIGEFPWQVAIALDG-MFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       319 ~~~~G~~~~~~~~p~~~~~~~~~-~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      |+++|..+..++|||++.++... .+.|.||||++++|||||||+....
T Consensus         1 ~~~~G~~~~~~~~Pw~~~i~~~~~~~~C~GtlIs~~~VLTaahC~~~~~   49 (229)
T smart00020        1 RIVGGSEANIGSFPWQVSLQYRGGRHFCGGSLISPRWVLTAAHCVYGSD   49 (229)
T ss_pred             CccCCCcCCCCCCCcEEEEEEcCCCcEEEEEEecCCEEEECHHHcCCCC
Confidence            57899999999999999998876 8899999999999999999996543

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=98.56  E-value=6.1e-08  Score=92.18  Aligned_cols=51  Identities=47%  Similarity=0.974  Sum_probs=46.1

Q ss_pred             CcceeecccccccccCCcEEEEccCC--eeeeeeEEecCceeeeccccccCCC
Q psy15063        316 PRRRIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       316 ~~~~~~~G~~~~~~~~p~~~~~~~~~--~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      ...|+++|.++..++|||+++++...  .+.|||+||+++||||||||+....
T Consensus         9 ~~~~i~~g~~~~~~~~Pw~~~l~~~~~~~~~Cggsli~~~~vltaaHC~~~~~   61 (256)
T KOG3627|consen    9 PEGRIVGGTEAEPGSFPWQVSLQYGGNGRHLCGGSLISPRWVLTAAHCVKGAS   61 (256)
T ss_pred             ccCCEeCCccCCCCCCCCEEEEEECCCcceeeeeEEeeCCEEEEChhhCCCCC
Confidence            35799999999999999999998876  7899999999999999999997654

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=7.4e-08  Score=93.03  Aligned_cols=58  Identities=40%  Similarity=0.650  Sum_probs=48.9

Q ss_pred             ccCCcceeecccccccccCCcEEEEccC-----CeeeeeeEEecCceeeeccccccCCCceEE
Q psy15063        313 YRQPRRRIILGGEADIGEFPWQVAIALD-----GMFFCGGALLNEHFVLTAAHCIMTGGPLTF  370 (417)
Q Consensus       313 ~~~~~~~~~~G~~~~~~~~p~~~~~~~~-----~~~~Cggsli~~~~vLtaAhC~dsGgPL~~  370 (417)
                      ..+-..||++|..|+.++||++|++...     .-.+||||+++.|||||||||+|.-+|.-.
T Consensus        26 ~devs~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~   88 (413)
T COG5640          26 ADEVSSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISS   88 (413)
T ss_pred             ccccceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccc
Confidence            3445789999999999999999998442     235999999999999999999988776554

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=98.20  E-value=2.1e-05  Score=74.08  Aligned_cols=117  Identities=11%  Similarity=0.064  Sum_probs=65.7

Q ss_pred             CCcceeeE------ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEe-ceecCCCCCCCCcEEEeeeEEEeC
Q psy15063        118 TCDYDVAI------RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHL-GDHDLTQLNETSHVRRGVRRVLFH  190 (417)
Q Consensus       118 ~~PW~v~i------~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~l-G~~~~~~~~~~~~q~~~V~~i~iH  190 (417)
                      .|||..-.      ...-|+++||+++.||||   +||+.+.....  ..+.+.. |...-..    +.-.+...++.+.
T Consensus        48 ~~Py~av~~~~~~tG~~~~~~~lI~pntvLTa---~Hc~~s~~~G~--~~~~~~p~g~~~~~~----~~~~~~~~~~~~~  118 (251)
T COG3591          48 QFPYSAVVQFEAATGRLCTAATLIGPNTVLTA---GHCIYSPDYGE--DDIAAAPPGVNSDGG----PFYGITKIEIRVY  118 (251)
T ss_pred             CCCcceeEEeecCCCcceeeEEEEcCceEEEe---eeEEecCCCCh--hhhhhcCCcccCCCC----CCCceeeEEEEec
Confidence            68887765      222566699999999999   99998764321  3333333 3222111    1112222223224


Q ss_pred             CC--CCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccC
Q psy15063        191 SH--FHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTS  243 (417)
Q Consensus       191 P~--Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~  243 (417)
                      |.  |..+....|+..+.|+...++.+.+...-++.......++...++|+-...
T Consensus       119 ~g~~~~~d~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~i~v~GYP~dk  173 (251)
T COG3591         119 PGELYKEDGASYDVGEAALESGINIGDVVNYLKRNTASEAKANDRITVIGYPGDK  173 (251)
T ss_pred             CCceeccCCceeeccHHHhccCCCccccccccccccccccccCceeEEEeccCCC
Confidence            43  344444567777777755555565555555555444456668889976543

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.56  E-value=0.0013  Score=67.62  Aligned_cols=84  Identities=17%  Similarity=0.112  Sum_probs=58.1

Q ss_pred             ccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEE
Q psy15063        128 DVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ  206 (417)
Q Consensus       128 ~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLk  206 (417)
                      ..++|.+|+++ +|||+   +|++.+.      ..+.|.+..          ...+..+-+..+|       ..||||||
T Consensus        58 ~~GSGfii~~~G~IlTn---~Hvv~~~------~~i~V~~~~----------~~~~~a~vv~~d~-------~~DlAllk  111 (428)
T TIGR02037        58 GLGSGVIISADGYILTN---NHVVDGA------DEITVTLSD----------GREFKAKLVGKDP-------RTDIAVLK  111 (428)
T ss_pred             ceeeEEEECCCCEEEEc---HHHcCCC------CeEEEEeCC----------CCEEEEEEEEecC-------CCCEEEEE
Confidence            48999999987 99999   9999753      566676542          1223333333333       36999999


Q ss_pred             ecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        207 LDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       207 L~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      ++.+    ..+.++.|.+......|+.+++.|+..
T Consensus       112 v~~~----~~~~~~~l~~~~~~~~G~~v~aiG~p~  142 (428)
T TIGR02037       112 IDAK----KNLPVIKLGDSDKLRVGDWVLAIGNPF  142 (428)
T ss_pred             ecCC----CCceEEEccCCCCCCCCCEEEEEECCC
Confidence            9865    345677776554433899999999864

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.01  E-value=0.00098  Score=61.90  Aligned_cols=36  Identities=33%  Similarity=0.933  Sum_probs=34.1

Q ss_pred             ccccCCcEEEEccCCeeeeeeEEecCceeeeccccc
Q psy15063        327 DIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI  362 (417)
Q Consensus       327 ~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~  362 (417)
                      +...|||.|.|+-+|.+.|.|.||+.+|||++.+|+
T Consensus        12 e~y~WPWlA~IYvdG~~~CsgvLlD~~WlLvsssCl   47 (267)
T PF09342_consen   12 EDYHWPWLADIYVDGRYWCSGVLLDPHWLLVSSSCL   47 (267)
T ss_pred             ccccCcceeeEEEcCeEEEEEEEeccceEEEecccc
Confidence            456799999999999999999999999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>PRK10898 serine endoprotease; Provisional

Probab=96.88  E-value=0.046  Score=54.86  Aligned_cols=83  Identities=17%  Similarity=0.102  Sum_probs=52.2

Q ss_pred             ccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEE
Q psy15063        128 DVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ  206 (417)
Q Consensus       128 ~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLk  206 (417)
                      ..-+|.+|+++ +|||+   +|=+.+.      ..+.|.+..          ...+...-+...|       .+||||||
T Consensus        78 ~~GSGfvi~~~G~IlTn---~HVv~~a------~~i~V~~~d----------g~~~~a~vv~~d~-------~~DlAvl~  131 (353)
T PRK10898         78 TLGSGVIMDQRGYILTN---KHVINDA------DQIIVALQD----------GRVFEALLVGSDS-------LTDLAVLK  131 (353)
T ss_pred             ceeeEEEEeCCeEEEec---ccEeCCC------CEEEEEeCC----------CCEEEEEEEEEcC-------CCCEEEEE
Confidence            46899999976 99999   9988642      556676532          1223333233333       37999999


Q ss_pred             ecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        207 LDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       207 L~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      ++.+ .    ..++-|........|+.+.+.|+..
T Consensus       132 v~~~-~----l~~~~l~~~~~~~~G~~V~aiG~P~  161 (353)
T PRK10898        132 INAT-N----LPVIPINPKRVPHIGDVVLAIGNPY  161 (353)
T ss_pred             EcCC-C----CCeeeccCcCcCCCCCEEEEEeCCC
Confidence            9854 1    2334443332222789999999753

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=96.88  E-value=0.0011  Score=64.16  Aligned_cols=50  Identities=30%  Similarity=0.670  Sum_probs=41.2

Q ss_pred             cCCcceeecccccccccCCcEEEEccCC----eeeeeeEEecCceeeecccccc
Q psy15063        314 RQPRRRIILGGEADIGEFPWQVAIALDG----MFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       314 ~~~~~~~~~G~~~~~~~~p~~~~~~~~~----~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      .+...+..+|..+...+.||.+.+...+    ..++.||+||+|||||++||+.
T Consensus        36 ~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~   89 (282)
T PF03761_consen   36 LPYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVM   89 (282)
T ss_pred             CCCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEE
Confidence            3344556888899999999999996643    3678999999999999999994

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=96.70  E-value=0.087  Score=52.82  Aligned_cols=83  Identities=13%  Similarity=0.080  Sum_probs=53.1

Q ss_pred             ccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEE
Q psy15063        128 DVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ  206 (417)
Q Consensus       128 ~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLk  206 (417)
                      ...+|.+|+++ +|||+   +|.+.+.      ..+.|.+..          ...+..+-+..+|       ..||||||
T Consensus        78 ~~GSG~vi~~~G~IlTn---~HVV~~~------~~i~V~~~d----------g~~~~a~vv~~d~-------~~DlAvlk  131 (351)
T TIGR02038        78 GLGSGVIMSKEGYILTN---YHVIKKA------DQIVVALQD----------GRKFEAELVGSDP-------LTDLAVLK  131 (351)
T ss_pred             ceEEEEEEeCCeEEEec---ccEeCCC------CEEEEEECC----------CCEEEEEEEEecC-------CCCEEEEE
Confidence            36899999977 99999   9999643      556666532          1223333333333       47999999


Q ss_pred             ecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        207 LDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       207 L~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      ++.+-     +.++.|........|+.+++.|+..
T Consensus       132 v~~~~-----~~~~~l~~s~~~~~G~~V~aiG~P~  161 (351)
T TIGR02038       132 IEGDN-----LPTIPVNLDRPPHVGDVVLAIGNPY  161 (351)
T ss_pred             ecCCC-----CceEeccCcCccCCCCEEEEEeCCC
Confidence            98642     2344443332222899999999864

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=96.61  E-value=0.0055  Score=50.45  Aligned_cols=23  Identities=9%  Similarity=-0.305  Sum_probs=20.1

Q ss_pred             ceEEEeeCC-eEEeeccceeeecCCCC
Q psy15063        130 CAVRIEFEK-VNLARKVGGVCDIDQLR  155 (417)
Q Consensus       130 C~GtLIs~~-~VLTA~~~A~Cv~~~~~  155 (417)
                      |+|.+|.++ +|||+   +||+.....
T Consensus         1 GTGf~i~~~g~ilT~---~Hvv~~~~~   24 (120)
T PF13365_consen    1 GTGFLIGPDGYILTA---AHVVEDWND   24 (120)
T ss_dssp             EEEEEEETTTEEEEE---HHHHTCCTT
T ss_pred             CEEEEEcCCceEEEc---hhheecccc
Confidence            689999999 99999   999976533

...

>PRK10139 serine endoprotease; Provisional

Probab=96.50  E-value=0.15  Score=53.01  Aligned_cols=83  Identities=17%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             ccceEEEeeC--CeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        128 DVCAVRIEFE--KVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       128 ~~C~GtLIs~--~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      ...+|.+|++  -+|||.   +|.+.+.      ..+.|.+..          ...+..+-+...|       ..|||||
T Consensus        90 ~~GSG~ii~~~~g~IlTn---~HVv~~a------~~i~V~~~d----------g~~~~a~vvg~D~-------~~DlAvl  143 (455)
T PRK10139         90 GLGSGVIIDAAKGYVLTN---NHVINQA------QKISIQLND----------GREFDAKLIGSDD-------QSDIALL  143 (455)
T ss_pred             ceEEEEEEECCCCEEEeC---hHHhCCC------CEEEEEECC----------CCEEEEEEEEEcC-------CCCEEEE
Confidence            4789999984  599999   9999653      667777642          1233333333332       4799999


Q ss_pred             EecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcC
Q psy15063        206 QLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWG  240 (417)
Q Consensus       206 kL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG  240 (417)
                      |++.+-    ...++.|.+......|+.+...|..
T Consensus       144 kv~~~~----~l~~~~lg~s~~~~~G~~V~aiG~P  174 (455)
T PRK10139        144 QIQNPS----KLTQIAIADSDKLRVGDFAVAVGNP  174 (455)
T ss_pred             EecCCC----CCceeEecCccccCCCCEEEEEecC
Confidence            998542    2346667554332279999999874

>PRK10942 serine endoprotease; Provisional

Probab=96.42  E-value=0.11  Score=54.35  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=53.6

Q ss_pred             ccceEEEeeC--CeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        128 DVCAVRIEFE--KVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       128 ~~C~GtLIs~--~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      ...+|.+|+.  -+|||.   +|.+.+.      ..+.|.+...          ..+..+-+..+|       ..|||||
T Consensus       111 ~~GSG~ii~~~~G~IlTn---~HVv~~a------~~i~V~~~dg----------~~~~a~vv~~D~-------~~DlAvl  164 (473)
T PRK10942        111 ALGSGVIIDADKGYVVTN---NHVVDNA------TKIKVQLSDG----------RKFDAKVVGKDP-------RSDIALI  164 (473)
T ss_pred             ceEEEEEEECCCCEEEeC---hhhcCCC------CEEEEEECCC----------CEEEEEEEEecC-------CCCEEEE
Confidence            4789999985  499999   9998643      6677776421          223333333333       4799999


Q ss_pred             EecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcC
Q psy15063        206 QLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWG  240 (417)
Q Consensus       206 kL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG  240 (417)
                      |++.+-.    ..++.|-+......|+.+...|.-
T Consensus       165 ki~~~~~----l~~~~lg~s~~l~~G~~V~aiG~P  195 (473)
T PRK10942        165 QLQNPKN----LTAIKMADSDALRVGDYTVAIGNP  195 (473)
T ss_pred             EecCCCC----CceeEecCccccCCCCEEEEEcCC
Confidence            9975332    335666544332378888888854

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=94.61  E-value=0.029  Score=53.05  Aligned_cols=37  Identities=30%  Similarity=0.653  Sum_probs=30.0

Q ss_pred             cccCCcEEEEcc---CCeeeeeeEEecCceeeeccccccC
Q psy15063        328 IGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       328 ~~~~p~~~~~~~---~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ...|||.+....   .+.+-|.++||+++-||||+||..+
T Consensus        46 t~~~Py~av~~~~~~tG~~~~~~~lI~pntvLTa~Hc~~s   85 (251)
T COG3591          46 TTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIYS   85 (251)
T ss_pred             CCCCCcceeEEeecCCCcceeeEEEEcCceEEEeeeEEec
Confidence            457999998855   3456677799999999999999944

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.26  E-value=1.2  Score=49.19  Aligned_cols=66  Identities=8%  Similarity=0.013  Sum_probs=37.8

Q ss_pred             eEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCC
Q psy15063        131 AVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP  210 (417)
Q Consensus       131 ~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~p  210 (417)
                      ..|||+|++|+|+   +|=..+        .-.|.+|....        ..+.+..--.|+.       .|+.+-||.+=
T Consensus        68 ~aTLigpqYiVSV---~HN~~g--------y~~v~FG~~g~--------~~Y~iV~RNn~~~-------~Df~~pRLnK~  121 (769)
T PF02395_consen   68 VATLIGPQYIVSV---KHNGKG--------YNSVSFGNEGQ--------NTYKIVDRNNYPS-------GDFHMPRLNKF  121 (769)
T ss_dssp             S-EEEETTEEEBE---TTG-TS--------CCEECESCSST--------CEEEEEEEEBETT-------STEBEEEESS-
T ss_pred             eEEEecCCeEEEE---EccCCC--------cCceeecccCC--------ceEEEEEccCCCC-------cccceeecCce
Confidence            4899999999999   774421        23577776432        3444444444544       69999999987


Q ss_pred             cCCCCceeeeeCCCC
Q psy15063        211 VPLTGTIQPVCLPQK  225 (417)
Q Consensus       211 v~~s~~v~PicLp~~  225 (417)
                      |+   -+.|+-+...
T Consensus       122 VT---EvaP~~~t~~  133 (769)
T PF02395_consen  122 VT---EVAPAEMTTA  133 (769)
T ss_dssp             -----SS----BBSS
T ss_pred             EE---EEeccccccc
Confidence            76   3667666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=87.07  E-value=0.31  Score=39.79  Aligned_cols=19  Identities=37%  Similarity=0.613  Sum_probs=17.7

Q ss_pred             eeeEEecCc-eeeecccccc
Q psy15063        345 CGGALLNEH-FVLTAAHCIM  363 (417)
Q Consensus       345 Cggsli~~~-~vLtaAhC~d  363 (417)
                      |.|.+|+++ +|||||||+.
T Consensus         1 GTGf~i~~~g~ilT~~Hvv~   20 (120)
T PF13365_consen    1 GTGFLIGPDGYILTAAHVVE   20 (120)
T ss_dssp             EEEEEEETTTEEEEEHHHHT
T ss_pred             CEEEEEcCCceEEEchhhee
Confidence            578999999 9999999996

...

>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.45  E-value=3  Score=35.20  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=26.2

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccch
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYI  406 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~  406 (417)
                      |-||+|.|+.+    ++||++.|       .+.-..|++|..+.
T Consensus        91 dCGg~L~C~HG----ViGi~Tag-------g~g~VaF~dir~~~  123 (127)
T PF00947_consen   91 DCGGILRCKHG----VIGIVTAG-------GEGHVAFADIRDLL  123 (127)
T ss_dssp             -TCSEEEETTC----EEEEEEEE-------ETTEEEEEECCCGS
T ss_pred             CCCceeEeCCC----eEEEEEeC-------CCceEEEEechhhh
Confidence            68999999755    99999998       34557899998763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	417
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		1e-14
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		4e-04
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		1e-14
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		4e-04
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		1e-13
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		4e-04
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		5e-12
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		9e-07
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		7e-12
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		9e-08
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		7e-12
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		8e-08
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		4e-11
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		9e-04
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		5e-11
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		7e-11
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		2e-10
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		2e-10
1aut_C	250	Human Activated Protein C Length = 250		3e-10
1aut_C	250	Human Activated Protein C Length = 250		8e-04
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		4e-10
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		9e-04
1pfx_C	235	Porcine Factor Ixa Length = 235		8e-10
1pfx_C	235	Porcine Factor Ixa Length = 235		3e-07
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		9e-10
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		2e-07
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		9e-10
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		2e-07
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		1e-09
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		2e-09
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		2e-07
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		3e-09
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		2e-04
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		3e-09
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		2e-07
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		3e-09
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		2e-07
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		3e-09
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		3e-09
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		3e-05
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		3e-09
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		4e-09
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		5e-07
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		3e-04
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		4e-09
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		4e-09
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		4e-09
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		3e-06
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		4e-09
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		5e-09
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		5e-09
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		6e-09
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		9e-08
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		3e-04
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		6e-09
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		7e-09
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		7e-04
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		1e-08
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		1e-08
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		2e-08
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		8e-05
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		2e-08
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		3e-04
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		2e-08
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-04
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		2e-08
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		1e-04
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		3e-08
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		1e-04
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		3e-08
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		1e-04
1dpo_A	223	Structure Of Rat Trypsin Length = 223		3e-08
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		4e-08
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		2e-04
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		4e-08
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		4e-08
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		7e-04
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		5e-08
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		6e-04
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		5e-08
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		6e-04
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		5e-08
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		6e-04
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		5e-08
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		5e-08
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		1e-04
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		6e-08
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		6e-08
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		6e-08
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		3e-05
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		6e-08
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		1e-04
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		7e-08
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		1e-04
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		7e-08
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		1e-04
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		7e-08
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		1e-04
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		7e-08
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		1e-04
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		7e-08
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		2e-04
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		7e-08
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		2e-04
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		7e-08
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		3e-05
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		7e-08
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		2e-04
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		7e-08
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		2e-04
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		7e-08
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		3e-05
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		7e-08
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		1e-04
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		7e-08
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		3e-05
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		7e-08
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		2e-04
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		7e-08
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		9e-05
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		7e-08
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		3e-05
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		7e-08
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		1e-04
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		7e-08
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		3e-05
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		7e-08
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		3e-05
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		7e-08
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		2e-04
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		7e-08
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		1e-04
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		7e-08
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		3e-05
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		7e-08
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		3e-05
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		7e-08
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		2e-04
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		7e-08
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		1e-04
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		7e-08
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		7e-08
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		3e-05
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		7e-08
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		3e-05
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		8e-08
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		2e-04
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		8e-08
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		6e-04
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		8e-08
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		4e-05
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		8e-08
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		2e-04
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		9e-08
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		2e-04
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		9e-08
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		3e-05
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		1e-07
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		1e-07
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		2e-07
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		2e-07
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		2e-07
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		2e-07
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		2e-07
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		2e-07
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		2e-07
2a31_A	223	Trypsin In Complex With Borate Length = 223		2e-07
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		2e-07
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		1e-04
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		2e-07
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		1e-04
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		3e-07
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		3e-07
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		3e-07
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		3e-07
3fzz_A	227	Structure Of Grc Length = 227		3e-07
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		3e-07
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		3e-07
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		3e-07
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		1e-04
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		4e-07
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		5e-04
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		4e-07
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		4e-07
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		6e-05
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		4e-07
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		4e-07
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		4e-07
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		4e-07
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		4e-07
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		5e-07
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		5e-07
1mtn_B	131	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		5e-07
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		5e-07
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		5e-07
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		6e-07
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		8e-04
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		6e-07
1kig_H	241	Bovine Factor Xa Length = 241		7e-07
1kig_H	241	Bovine Factor Xa Length = 241		7e-05
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		7e-07
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		8e-07
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		5e-04
2any_A	241	Expression, Crystallization And The Three-Dimension		9e-07
2any_A	241	Expression, Crystallization And The Three-Dimension		3e-06
2anw_A	241	Expression, Crystallization And Three-Dimensional S		1e-06
2anw_A	241	Expression, Crystallization And Three-Dimensional S		7e-06
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		1e-06
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		1e-06
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		1e-06
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		8e-04
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		1e-06
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		1e-06
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		1e-06
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		1e-06
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		4e-06
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		1e-06
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		1e-06
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		2e-06
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		2e-05
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		2e-06
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		2e-06
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		2e-06
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		2e-06
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		2e-06
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		2e-06
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		2e-04
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		2e-06
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		2e-06
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		7e-05
2bok_A	241	Factor Xa- Cation Length = 241		2e-06
2bok_A	241	Factor Xa- Cation Length = 241		6e-05
2xrc_A	565	Human Complement Factor I Length = 565		2e-06
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		2e-06
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		6e-04
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		2e-06
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		2e-06
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		2e-06
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		2e-06
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		2e-06
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		2e-06
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		2e-04
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		2e-06
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		3e-06
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		3e-06
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		6e-04
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		3e-06
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		3e-06
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		6e-04
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		3e-06
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		4e-04
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		3e-06
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		3e-06
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		3e-06
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		6e-04
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		3e-06
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		3e-06
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		5e-05
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		4e-06
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		4e-05
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		4e-06
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		4e-06
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		4e-06
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		5e-05
3h7t_A	235	Crystal Structure Of Scabies Mite Inactivated Prote		4e-06
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		4e-06
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		5e-06
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		5e-04
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		5e-06
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		5e-06
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		7e-06
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		6e-05
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		7e-06
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		7e-05
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		8e-06
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		7e-05
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		8e-06
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		6e-05
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		8e-06
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		7e-05
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		8e-06
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		9e-06
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		9e-06
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		7e-05
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		9e-06
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		1e-04
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		1e-05
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		6e-05
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		1e-05
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		6e-05
2kai_A	80	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		1e-05
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		1e-05
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		5e-04
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		1e-05
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		5e-04
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		1e-05
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		5e-04
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		2e-05
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		6e-05
3h7o_A	228	Crystal Structure Of Scabies Mite Inactivated Prote		2e-05
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		2e-05
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		4e-04
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-05
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		4e-05
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-05
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		4e-05
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		2e-05
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		9e-05
1kdq_A	131	Crystal Structure Analysis Of The Mutant S189d Rat		2e-05
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		3e-05
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		8e-04
1lto_A	245	Human Alpha1-Tryptase Length = 245		3e-05
1lto_A	245	Human Alpha1-Tryptase Length = 245		3e-05
1lto_A	245	Human Alpha1-Tryptase Length = 245		2e-04
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		3e-05
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		4e-04
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		3e-05
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		3e-05
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		5e-04
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		3e-05
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		5e-04
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		3e-05
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		4e-04
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		3e-05
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		3e-05
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		6e-04
4gso_A	232	Structure Of Jararacussin-I Length = 232		3e-05
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		3e-05
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		3e-05
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		6e-04
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		4e-05
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		6e-04
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		4e-05
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		6e-04
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		4e-05
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		5e-04
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		4e-05
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		5e-04
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		4e-05
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		6e-04
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		4e-05
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		8e-04
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		5e-05
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		5e-04
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		5e-05
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		6e-05
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		2e-04
2jet_B	128	Crystal Structure Of A Trypsin-Like Mutant (S189d,		6e-05
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		7e-05
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		7e-05
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		7e-05
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		7e-05
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		1e-04
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		7e-05
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		7e-05
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		8e-05
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		8e-05
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		8e-05
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		8e-05
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		7e-04
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		8e-05
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		2e-04
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		9e-05
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		1e-04
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		9e-05
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		2e-04
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		9e-05
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		2e-04
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		1e-04
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		2e-04
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		1e-04
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		2e-04
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		1e-04
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		1e-04
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		2e-04
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		1e-04
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		1e-04
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		2e-04
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		1e-04
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		1e-04
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		1e-04
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		1e-04
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		1e-04
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		1e-04
2hnt_C	70	Crystallographic Structure Of Human Gamma-Thrombin		2e-04
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		2e-04
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		2e-04
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		4e-04
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		2e-04
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		2e-04
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		2e-04
2fi5_E	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		2e-04
2hnt_E	81	Crystallographic Structure Of Human Gamma-Thrombin		2e-04
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		2e-04
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-04
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		2e-04
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		2e-04
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		2e-04
2rg3_A	218	Covalent Complex Structure Of Elastase Length = 218		2e-04
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		2e-04
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		2e-04
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		2e-04
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		2e-04
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-04
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		2e-04
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		2e-04
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		2e-04
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		2e-04
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		2e-04
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-04
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		2e-04
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		2e-04
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		2e-04
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		2e-04
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		3e-04
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-04
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-04
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		3e-04
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		3e-04
1b0f_A	218	Crystal Structure Of Human Neutrophil Elastase With		3e-04
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		3e-04
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		3e-04
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		3e-04
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		3e-04
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		4e-04
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		3e-04
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		3e-04
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		4e-04
1au8_A	224	Human Cathepsin G Length = 224		5e-04
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		5e-04
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		5e-04
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		6e-04
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		6e-04
1kyn_B	235	Cathepsin-G Length = 235		6e-04
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		7e-04
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		7e-04
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		8e-04

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 149 CDIDQ--LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ 206
           C ID    R +  ++    LG HD +Q +      R ++R++ H  F+ F    DIALL+
Sbjct: 43  CYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLE 102
Query: 207 LDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNAR 265
           L++P   +  ++P+CLP     F  GK   V GWG T +  G  +  LQK E++V++   
Sbjct: 103 LEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQY-GGTGALILQKGEIRVINQTT 161
Query: 266 CSTVIEESIG-----IGMLCAAPDETQGTCFVPVSPV 297
           C  ++ + I      +G L    D  QG    P+S V
Sbjct: 162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSV 198

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 320 IILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIM 363
           ++ G +AD GE+PWQV++ AL     CG +L++ +++++AAHC +
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 149 CDIDQ--LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ 206
           C ID    R +  ++    LG HD +Q +      R ++R++ H  F+ F    DIALL+
Sbjct: 43  CYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLE 102
Query: 207 LDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNAR 265
           L++P   +  ++P+CLP     F  GK   V GWG T +  G  +  LQK E++V+    
Sbjct: 103 LEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQY-GGTGALILQKGEIRVIQQTT 161
Query: 266 CSTVIEESIG-----IGMLCAAPDETQGTCFVPVSPV 297
           C  ++ + I      +G L    D  QG    P+S V
Sbjct: 162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSV 198

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 320 IILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIM 363
           ++ G +AD GE+PWQV++ AL     CG +L++ +++++AAHC +
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 149 CDIDQ--LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ 206
           C ID    R +  ++    LG HD +Q +      R ++R++ H  F+ F    DIALL+
Sbjct: 43  CYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLE 102
Query: 207 LDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNAR 265
           L++P   +  ++P+ LP     F  GK   V GWG T +  G  +  LQK E++V++   
Sbjct: 103 LEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQY-GGTGALILQKGEIRVINQTT 161
Query: 266 CSTVIEESIG-----IGMLCAAPDETQGTCFVPVSPV 297
           C  ++ + I      +G L    D  QG    P+S V
Sbjct: 162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSV 198

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 320 IILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIM 363
           ++ G +AD GE+PWQV++ AL     CG +L++ +++++AAHC +
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 10/115 (8%)
Query: 180 VRRGVRRVLFHSHFHPFV------LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GK 232
           ++ GV+ V++H  + PF        SNDIAL+ L  P+PLT  IQPVCLP  G++ + GK
Sbjct: 68  LQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGK 127
Query: 233 RGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV--IEESIGIGMLCAAPDE 285
              V GWG T +  G+ +  LQ+  V ++SN  C+        I   M CA   E
Sbjct: 128 ICTVTGWGNTQY-YGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPE 181

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G +  +G +PWQV++  DG   CGG+LL+  +VLTAAHC 
Sbjct: 1   IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCF 43

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 183 GVRRVLFHSHFHPFV------LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGH 235
           GV+ V++H  + PF        SNDIAL+ L  P+PLT  IQPVCLP  G++ + GK   
Sbjct: 188 GVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICT 247
Query: 236 VVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
           V GWG T +  G+ +  LQ+  V ++SN  C+
Sbjct: 248 VTGWGNTQY-YGQQAGVLQEARVPIISNDVCN 278

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           P  RI+ G +  +G +PWQV++  DG   CGG+LL+  +VLTAAHC 
Sbjct: 114 PVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCF 160

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 183 GVRRVLFHSHFHPFV------LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGH 235
           GV+ V++H  + PF        SNDIAL+ L  P+PLT  IQPVCLP  G++ + GK   
Sbjct: 188 GVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICT 247
Query: 236 VVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
           V GWG T +  G+ +  LQ+  V ++SN  C+
Sbjct: 248 VTGWGNTQY-YGQQAGVLQEARVPIISNDVCN 278

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           P  RI+ G +  +G +PWQV++  DG   CGG+LL+  +VLTAAHC 
Sbjct: 114 PVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCF 160

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           R+   S+    LG H  + L     V R +  ++ + H++     NDIA++ L+  V  T
Sbjct: 46  RNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYT 105
Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE- 272
             IQP+ LP++ + F  G+   + GWG   +  G  +  LQ+ +V +LSN RC   + E 
Sbjct: 106 DYIQPISLPEENQVFPPGRNCSIAGWGTVVY-QGTTADILQEADVPLLSNERCQQQMPEY 164
Query: 273 SIGIGMLCAAPDE 285
           +I   M+CA  +E
Sbjct: 165 NITENMICAGYEE 177

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G +A  G +PW V +  D    CG +L++  ++++AAHC+
Sbjct: 1   IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCV 43

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 164 LHLGDHD-LTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCL 222
           +  G+ D LT+     +  R +R+V+ HS+F+P  + ND+ALL LDRP+     I  +CL
Sbjct: 193 IRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICL 252
Query: 223 PQKGESFIGKRGHVVGWGVTSF-PMGEPSPTLQKLEVKVLSNARCSTVIEES-IGIG--- 277
           PQ+ + F        GWG   F      S  L+K+++  +   +C   +  + +G+    
Sbjct: 253 PQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVL 312
Query: 278 ---MLCAAPDETQGTC 290
               +CA  ++ + TC
Sbjct: 313 DQTFVCAGGEQGKDTC 328

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           R+   S+    LG H  + L       R + +++ + H++    +NDIA++ L+  V  T
Sbjct: 46  RNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYT 105
Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE- 272
             IQP+CLP++ + F  G+   + GWG   +  G  +  LQ+ +V +LSN +C   + E 
Sbjct: 106 DYIQPICLPEENQVFPPGRICSIAGWGALIY-QGSTADVLQEADVPLLSNEKCQQQMPEY 164
Query: 273 SIGIGMLCA 281
           +I   M+CA
Sbjct: 165 NITENMVCA 173

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG H++ +   T      V+R + H  ++P   SNDI LLQL+R    T  +QP
Sbjct: 48  SSINVTLGAHNIKEQEPTQQFI-PVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQP 106
Query: 220 VCLP-QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           + LP  K +   G+   V GWG T+ P+G+ S TLQ++++ V  + +C + +       +
Sbjct: 107 LRLPSNKAQVKPGQTCSVAGWGQTA-PLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTI 165
Query: 279 -LCAAPDETQGTCF 291
            LC    E + T F
Sbjct: 166 ELCVGDPEIKKTSF 179

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG H++ +   T      V+R + H  ++P   SNDI LLQL+R    T  +QP
Sbjct: 48  SSINVTLGAHNIKEQEPTQQFI-PVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQP 106
Query: 220 VCLP-QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           + LP  K +   G+   V GWG T+ P+G+ S TLQ++++ V  + +C + +       +
Sbjct: 107 LRLPSNKAQVKPGQTCSVAGWGQTA-PLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTI 165
Query: 279 -LCAAPDETQGTCF 291
            LC    E + T F
Sbjct: 166 ELCVGDPEIKKTSF 179

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
           +L++ LG++DL +  E   +   ++ V  H ++      NDIALL L +P  L+ TI P+
Sbjct: 49  KLLVRLGEYDLRRW-EKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPI 107
Query: 221 CLPQKG--ESFIGKRGH---VVGWGVTSFPMGEPSPT----LQKLEVKVLSNARCSTVIE 271
           CLP  G  E  + + G    V GWG  S    E        L  +++ V+ +  CS V+ 
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167
Query: 272 ESIGIGMLCA 281
             +   MLCA
Sbjct: 168 NMVSENMLCA 177

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGP+     G   L G+VS+G  GC ++ +Y  +YT+VS Y+ WIH
Sbjct: 191 SGGPMVASFHGTWFLVGLVSWG-EGCGLLHNY-GVYTKVSRYLDWIH 235

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
           +L++ LG++DL +  E   +   ++ V  H ++      NDIALL L +P  L+ TI P+
Sbjct: 49  KLLVRLGEYDLRRW-EKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPI 107
Query: 221 CLPQKG--ESFIGKRGH---VVGWGVTSFPMGEPSPT----LQKLEVKVLSNARCSTVIE 271
           CLP  G  E  + + G    V GWG  S    E        L  +++ V+ +  CS V+ 
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167
Query: 272 ESIGIGMLCA 281
             +   MLCA
Sbjct: 168 NMVSENMLCA 177

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGP+     G   L G+VS+G  GC ++ +Y  +YT+VS Y+ WIH
Sbjct: 191 SGGPMVASFHGTWFLVGLVSWG-EGCGLLHNY-GVYTKVSRYLDWIH 235

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 98/257 (38%), Gaps = 78/257 (30%)
Query: 158 PVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTG 215
           P  ++ +  G+++ T+  E +  RR V R + H  ++  V   S+DIALL+LD P+ L  
Sbjct: 45  PGVKITVVAGEYN-TEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNS 103
Query: 216 TIQPVCLPQKGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
            + P+C+  K  + I  +   G+V GWG   F  G  +  LQ L+V              
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRV-FNRGRSATILQYLKV-------------- 148
Query: 273 SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP 332
                     P   + TC        Y+      FH+G                      
Sbjct: 149 ----------PLVDRATCLRSTKFTIYSNMFCAGFHEG---------------------- 176
Query: 333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIM 392
                   G   C G                +GGP   E +G   L GI+S+G   CA+ 
Sbjct: 177 --------GKDSCQGD---------------SGGPHVTEVEGTSFLTGIISWGEE-CAVK 212
Query: 393 PSYPDLYTRVSEYIRWI 409
             Y  +YT+VS Y+ WI
Sbjct: 213 GKY-GIYTKVSRYVNWI 228

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+GGE A  G+FPWQV +      FCGG+++NE +V+TAAHCI  G  +T     Y+
Sbjct: 1   IVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVTAAHCIEPGVKITVVAGEYN 57

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
           G+H++ +   T   +R V R++ H +F+  +   ++DIALL+LD P+ L   + P+C+  
Sbjct: 54  GEHNIEETEHTEQ-KRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
           K  + I  +   G+V GWG   F  G  +  LQ L V ++  A C    + +I   M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRAALVLQYLRVPLVDRATCLRSTKFTITNNMFCA 171
Query: 282 APDE 285
              E
Sbjct: 172 GFHE 175

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
           ++GGE A  G+FPWQV +      FCGG+++NE +++TAAHC+ TG  +T
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
           G+H++ +   T   +R V R++ H +F+  +   ++DIALL+LD P+ L   + P+C+  
Sbjct: 54  GEHNIEETEHTEQ-KRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
           K  + I  +   G+V GWG   F  G  +  LQ L V ++  A C    + +I   M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCA 171
Query: 282 APDE 285
              E
Sbjct: 172 GFHE 175

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
           ++GGE A  G+FPWQV +      FCGG+++NE +++TAAHC+ TG  +T
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  +NE +       +V+ H  ++   L NDI L++L +P  L   +  
Sbjct: 44  SRIQVRLGEHNIA-VNEGTEQFIDSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP    S  G R  V GWG  S        TL+ L++ +LS++ C++     I   M 
Sbjct: 103 VALPSSCASS-GTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 162 CAGFMEGGKDSCQGDSGGPV 181

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
           G+H++ +   T   +R V R++ H +++  +   ++DIALL+LD P+ L   + P+C+  
Sbjct: 54  GEHNIEETEHTEQ-KRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
           K  + I  +   G+V GWG   F  G  +  LQ L V ++  A C    + +I   M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCA 171
Query: 282 APDE 285
              E
Sbjct: 172 GFHE 175

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
           ++GGE A  G+FPWQV +      FCGG+++NE +++TAAHC+ TG  +T
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
           PVCLP +  +      G +G V GWG      G+PS  LQ + + ++    C       I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPS-VLQVVNLPIVERPVCKDSTRIRI 175
Query: 275 GIGMLCAA--PDE 285
              M CA   PDE
Sbjct: 176 TDNMFCAGYKPDE 188

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
           G+H++ +   T   +R V R++ H +++  +   ++DIALL+LD P+ L   + P+C+  
Sbjct: 54  GEHNIEETEHTEQ-KRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
           K  + I  +   G+V GWG   F  G  +  LQ L V ++  A C    + +I   M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCA 171
Query: 282 APDE 285
              E
Sbjct: 172 GFHE 175

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
           ++GGE A  G+FPWQV +      FCGG+++NE +++TAAHC+ TG  +T
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
           G+H++ +   T   +R V R++ H +++  +   ++DIALL+LD P+ L   + P+C+  
Sbjct: 54  GEHNIEETEHTEQ-KRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
           K  + I  +   G+V GWG   F  G  +  LQ L V ++  A C    + +I   M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCA 171
Query: 282 APDE 285
              E
Sbjct: 172 GFHE 175

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
           ++GGE A  G+FPWQV +      FCGG+++NE +++TAAHC+ TG  +T
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPF-VLSNDIALLQLDRPVPLTGTI 217
           +++L L LG H L     T H++  ++    H  + P   L ND+ALLQLD  V  + TI
Sbjct: 47  MAQLRLVLGLHTLDSPGLTFHIKAAIQ----HPRYKPVPALENDLALLQLDGKVKPSRTI 102
Query: 218 QPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESI 274
           +P+ LP K +    G R  + GWG+T    G  S  L++L+++VL    C  S     S+
Sbjct: 103 RPLALPSKRQVVAAGTRCSMAGWGLT-HQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSL 161
Query: 275 GIGMLCAAPD-ETQGTC 290
              M+C A D + Q  C
Sbjct: 162 SPSMVCLAADSKDQAPC 178

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           LG H++ + +E + V         H +++ FV+SNDIA+++L  PV LT  I  V LP  
Sbjct: 53  LGAHNIRE-DEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPST 111
Query: 226 GESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE 285
            +  +G      GWG+ S      S  L++++V ++SNA C  V    +  G +C     
Sbjct: 112 -DVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVY-GIVTDGNICIDSTG 169
Query: 286 TQGTC 290
            +GTC
Sbjct: 170 GKGTC 174

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG 366
           I+ G EA    +P Q A+ +D M+FCGG+L++  ++LTAAHC+   G
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAG 47

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++ ++ E S       RV+ H ++  + + NDI L++L +P  L   +QP
Sbjct: 59  SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 117
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP       G    V GWG T     + S  LQ L + +LS + C+      I   M 
Sbjct: 118 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGMITNAMF 175
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 176 CAGYLEGGKDSCQGDSGGPV 195

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
           + +V  +S ++   ++NDI LL+L      + T+  VCLP   + F  G      GWG+T
Sbjct: 70  IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLT 129
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
            +        LQ+  + +LSN  C       I   M+CA
Sbjct: 130 RYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICA 168

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 320 IILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIMT 364
           I+ G EA  G +PWQV++    G  FCGG+L+NE++V+TAAHC +T
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT 46

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  +++G   L GIVS+G + C+   S P +Y RV+  + W+ 
Sbjct: 180 SGGPLVCKKNGAWTLVGIVSWGSSTCST--STPGVYARVTALVNWVQ 224

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++ ++ E S       RV+ H ++  + + NDI L++L +P  L   +QP
Sbjct: 64  SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 122
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP       G    V GWG T     + S  LQ L + +LS + C+      I   M 
Sbjct: 123 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGMITNAMF 180
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 181 CAGYLEGGKDSCQGDSGGPV 200

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++ ++ E S       RV+ H ++  + + NDI L++L +P  L   +QP
Sbjct: 44  SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP       G    V GWG T     + S  LQ L + +LS + C+      I   M 
Sbjct: 103 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S L +  G+ D++ +NE S     V +++ H +F   +L NDI+LL+L   +     + P
Sbjct: 56  SGLQIVAGELDMS-VNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAP 114
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STVIEESIGIGM 278
           + LP++G +  G    V GWG TS   G     LQK+ V ++S+  C +    + I   M
Sbjct: 115 IALPEQGHTATGDV-IVTGWGTTS-EGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSM 172
Query: 279 LCAA-PDETQGTC 290
           +CA  P+  + +C
Sbjct: 173 ICAGVPEGGKDSC 185

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI 414
           +GGPL     G   LAGIVS+G  GCA  P YP +YT VS ++ WI  NA+
Sbjct: 189 SGGPLAASDTGSTYLAGIVSWGY-GCA-RPGYPGVYTEVSYHVDWIKANAV 237

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++ ++ E S       RV+ H ++  + + NDI L++L +P  L   +QP
Sbjct: 44  SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP       G    V GWG T     + S  LQ L + +LS + C+      I   M 
Sbjct: 103 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++ ++ E S       RV+ H ++  + + NDI L++L +P  L   +QP
Sbjct: 44  SRVAVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP       G    V GWG T     +    LQ L + +LS + C+      I   M 
Sbjct: 103 VALPSSCAP-AGTMCTVSGWGNTMSSTAD-GDKLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++ ++ E S       RV+ H ++  + + NDI L++L +P  L   +QP
Sbjct: 44  SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP       G    V GWG T     + S  LQ L + +LS + C+      I   M 
Sbjct: 103 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SDKLQCLNIPILSYSDCNDSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
           + +V  +S ++   ++NDI LL+L      + T+  VCLP   + F  G      GWG+T
Sbjct: 85  IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLT 144
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
            +        LQ+  + +LSN  C       I   M+CA
Sbjct: 145 RYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICA 183

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 319 RIILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIMT 364
           RI+ G EA  G +PWQV++    G  FCGG+L+NE++V+TAAHC +T
Sbjct: 15  RIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT 61

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  +++G   L GIVS+G + C+   S P +Y RV+  + W+ 
Sbjct: 195 SGGPLVCKKNGAWTLVGIVSWGSSTCST--STPGVYARVTALVNWVQ 239

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++ ++ E S       RV+ H ++  + + NDI L++L +P  L   +QP
Sbjct: 44  SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP       G    V GWG T     + +  LQ L + +LS + C+      I   M 
Sbjct: 103 VALPSSCAP-AGTMCTVSGWGNTMSSTADKN-KLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 201 DIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK 259
           DIAL++L+R V  T  I+PVCLPQ  E   +G+R  VVGWG T    G+ S   QKL V 
Sbjct: 133 DIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTE--TGQYSTIKQKLAVP 190
Query: 260 VLSNARCSTVIEES---IGIGMLCAAPDETQGTC 290
           V+   +C+     +   +    LCA  ++ + +C
Sbjct: 191 VVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSC 224

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 313 YRQPRRRIILGGEADIGEFPWQVAIALDG-----MFFCGGALLNEHFVLTAAHCI 362
           Y+    +I+ G +    EFPW   I          F CGG+L+N  +++TAAHC+
Sbjct: 16  YQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCV 70

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPF-VLSNDIALLQLDRPVPLTGTI 217
           +++L L LG H L     T H++  ++    H  + P   L N++ALLQLD  V  + TI
Sbjct: 47  MAQLRLVLGLHTLDSPGLTFHIKAAIQ----HPRYKPVPALENNLALLQLDGKVKPSRTI 102
Query: 218 QPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESI 274
           +P+ LP K +    G R  + GWG+T    G  S  L++L+++VL    C  S     S+
Sbjct: 103 RPLALPSKRQVVAAGTRCSMAGWGLT-HQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSL 161
Query: 275 GIGMLCAAPD-ETQGTC 290
              M+C A D + Q  C
Sbjct: 162 SPSMVCLAADSKDQAPC 178

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + LG+H++ ++ E S       RV+ H ++  + + NDI L++L +P  L   +QPV LP
Sbjct: 48  VRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
Query: 224 QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA-- 281
                  G    V GWG T     + +  LQ L + +LS + C+      I   M CA  
Sbjct: 107 SSCAP-AGTMCTVSGWGNTMSSTADKN-KLQCLNIPILSYSDCNNSYPGMITNAMFCAGY 164
Query: 282 ---APDETQGTCFVPV 294
                D  QG    PV
Sbjct: 165 LEGGKDSCQGDSGGPV 180

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPL 213
           ++  V +L++ +G H  T+          + ++  H  ++    L  DIALL+L RP+ L
Sbjct: 101 KNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIEL 160
Query: 214 TGTIQPVCLPQKGES----FIGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSN 263
           +  I PVCLP K  +      G +G V GWG       TS    +PS  LQ + + ++  
Sbjct: 161 SDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPS-VLQVVNLPLVER 219
Query: 264 ARCSTVIEESIGIGMLCAAPDETQG 288
             C       I   M CA     +G
Sbjct: 220 PVCKASTRIRITDNMFCAGYKPGEG 244

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A++G  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 49  RIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 95

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPL 213
           ++  V +L++ +G H  T+          + ++  H  ++    L  DIALL+L RP+ L
Sbjct: 52  KNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIEL 111
Query: 214 TGTIQPVCLPQKGES----FIGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSN 263
           +  I PVCLP K  +      G +G V GWG       TS    +PS  LQ + + ++  
Sbjct: 112 SDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPS-VLQVVNLPLVER 170
Query: 264 ARCSTVIEESIGIGMLCAAPDETQG 288
             C       I   M CA     +G
Sbjct: 171 PVCKASTRIRITDNMFCAGYKPGEG 195

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A++G  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPL 213
           ++  V +L++ +G H  T+          + ++  H  ++    L  DIALL+L RP+ L
Sbjct: 52  KNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIEL 111
Query: 214 TGTIQPVCLPQKGES----FIGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSN 263
           +  I PVCLP K  +      G +G V GWG       TS    +PS  LQ + + ++  
Sbjct: 112 SDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPS-VLQVVNLPLVER 170
Query: 264 ARCSTVIEESIGIGMLCAAPDETQG 288
             C       I   M CA     +G
Sbjct: 171 PVCKASTRIRITDNMFCAGYKPGEG 195

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A++G  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG       T+   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
           PVCLP +  +      G +G V GWG      G+PS  LQ + + ++    C       I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLK---GQPS-VLQVVNLPIVERPVCKDSTRIRI 172
Query: 275 GIGMLCAA--PDE 285
              M CA   PDE
Sbjct: 173 TDNMFCAGYKPDE 185

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
           PVCLP +  +      G +G V GWG      G+PS  LQ + + ++    C       I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLK-EKGQPS-VLQVVNLPIVERPVCKDSTRIRI 174
Query: 275 GIGMLCAA--PDE 285
              M CA   PDE
Sbjct: 175 TDNMFCAGYKPDE 187

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG C  PV
Sbjct: 161 VCVGFLEGGKDSCQGDCGGPV 181

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
           PVCLP +  +      G +G V GWG      G+PS  LQ + + ++    C       I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLK-ETGQPS-VLQVVNLPIVERPVCKDSTRIRI 174
Query: 275 GIGMLCAA--PDE 285
              M CA   PDE
Sbjct: 175 TDNMFCAGYKPDE 187

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F+   L NDI L++L  P  L   +  
Sbjct: 44  SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
           V LP+   +  G    + GWG T          LQ L+  VLSN+ C +     +    I
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSSYPGQITGNMI 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
            +G L    D  QG    PV
Sbjct: 162 CVGFLQGGKDSCQGDSGGPV 181

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 180 VRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP------QKGESFIGKR 233
           V  G+ + L H  +    + +DIALL+L+R VP    I+P+CLP      +K E      
Sbjct: 202 VNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQI--ST 259
Query: 234 GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTC 290
             V GWG T    G  S  L +  V +   + CS     ++ +  LC    + Q +C
Sbjct: 260 YFVTGWGTTE--NGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSC 314

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 318 RRIILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
           +R+  G E  +   PW   +      +  F CGGA+++E ++LTAAHC+
Sbjct: 117 QRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCV 165

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIALL+L +PVP +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 116
Query: 219 PVCLPQKG--ESFI--GKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP K    S +  G +G V GWG       T+    +PS  LQ + + ++    C  
Sbjct: 117 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPS-VLQVVNLPIVERPVCKA 175
Query: 269 VIEESIGIGMLCAA 282
                I   M CA 
Sbjct: 176 STRIRITDNMFCAG 189

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+ G  PWQV +         CG +L+++ +VLTAAHCI+
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCIL 46

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIALL+L +PVP +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 116
Query: 219 PVCLPQKG--ESFI--GKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP K    S +  G +G V GWG       T+    +PS  LQ + + ++    C  
Sbjct: 117 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPS-VLQVVNLPIVERPVCKA 175
Query: 269 VIEESIGIGMLCAA 282
                I   M CA 
Sbjct: 176 STRIRITDNMFCAG 189

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+ G  PWQV +         CG +L+++ +VLTAAHCI+
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCIL 46

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIALL+L +PVP +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 116
Query: 219 PVCLPQKG--ESFI--GKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP K    S +  G +G V GWG       T+    +PS  LQ + + ++    C  
Sbjct: 117 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPS-VLQVVNLPIVERPVCKA 175
Query: 269 VIEESIGIGMLCAA 282
                I   M CA 
Sbjct: 176 STRIRITDNMFCAG 189

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+ G  PWQV +         CG +L+++ +VLTAAHCI+
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCIL 46

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++ ++ E S       RV+ H ++  + + NDI L++L +   L   +QP
Sbjct: 44  SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKSATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP       G    V GWG T     + +  LQ L + +LS + C+      I   M 
Sbjct: 103 VALPSSCAP-AGTMCTVSGWGNTMSSTADKN-KLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T           + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTAYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
           PVCLP +  +      G +G V GWG      G+PS  LQ + + ++    C       I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLK-ETGQPS-VLQVVNLPIVERPVCKDSTRIRI 174
Query: 275 GIGMLCAA--PDE 285
              M CA   PDE
Sbjct: 175 TDNMFCAGYKPDE 187

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G  A  G+FP+ V+I+ +G  +CGG+LLN + VLTAAHC+       + Q G+ + A
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVS-----GYAQSGFQIRA 55
Query: 380 GIVS 383
           G +S
Sbjct: 56  GSLS 59

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G  A  G+FP+ V+I+ +G  +CGG+LLN + VLTAAHC+       + Q G+ + A
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVS-----GYAQSGFQIRA 55
Query: 380 GIVS 383
           G +S
Sbjct: 56  GSLS 59

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 106 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 165
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 166 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 224
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 225 STRIRITDNMFCAGYKPDE 243

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 49  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 95

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 58  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 117
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 118 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 176
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 177 STRIRITDNMFCAGYKPDE 195

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 47

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 88  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 147
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 148 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 206
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 207 STRIRITDNMFCAGYKPDE 225

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 31  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 77

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 87  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 205
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 206 STRIRITDNMFCAGYKPDE 224

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 30  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 76

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 61  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 120
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 121 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 179
Query: 269 VIEESIGIGMLCA--APDE 285
                I   M CA   PDE
Sbjct: 180 STRIRITDNMFCAYYKPDE 198

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 320 IILGGEADIGEFPWQVAI------ALDGMFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +      +    F CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCLL 50

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 86  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 145
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 146 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 204
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 205 STRIRITDNMFCAGYKPDE 223

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 29  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 75

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 87  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 205
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 206 STRIRITDNMFCAGYKPDE 224

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 30  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 76

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 87  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 205
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 206 STRIRITDNMFCAGYKPDE 224

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 30  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 76

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 93  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 152
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 153 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 211
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 212 STRIRITDNMFCAGYKPDE 230

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 36  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 82

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 89  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 148
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 149 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 207
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 208 STRIRITDNMFCAGYKPDE 226

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 32  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 78

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 3/133 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG H++ +   T  V   VRR + H  ++   L+NDI LL+L R   +T  + P
Sbjct: 48  SSINVTLGAHNIMERERTQQVI-PVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSP 106
Query: 220 VCLPQK-GESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           + LP+   E   G    V GWG     M   +  LQ+++++V S  +C    +  I    
Sbjct: 107 INLPRSLAEVKPGMMCSVAGWGRLGVNMPS-TDKLQEVDLEVQSEEKCIARFKNYIPFTQ 165
Query: 279 LCAAPDETQGTCF 291
           +CA     +   F
Sbjct: 166 ICAGDPSKRKNSF 178

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 89  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 148
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 149 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 207
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 208 STRIRITDNMFCAGYKPDE 226

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 32  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 78

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 93  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 152
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 153 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 211
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 212 STRIRITDNMFCAGYKPDE 230

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 36  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 82

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
            L + LG H+L Q  E+S  +  V R + H  +       DI LL+L RP  L+  IQP+
Sbjct: 46  NLQVFLGKHNLRQ-RESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 104
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
            L ++  S      H++GWG T+   G+   T+Q   + ++S   C       I   MLC
Sbjct: 105 PL-ERDCSANTTSCHILGWGKTAD--GDFPDTIQCAYIHLVSREECEHAYPGQITQNMLC 161
Query: 281 AAPDETQG 288
           A  DE  G
Sbjct: 162 AG-DEKYG 168

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
           ++ GG  D    P+Q A+   G   CGG L++  +VLTAAHC
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC 42

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 222 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 281
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 282 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 340
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 341 STRIRITDNMFCAGYKPDE 359

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 165 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 211

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 87  NDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 205
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 206 STRIRITDNMFCAGYKPDE 224

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           RI+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 30  RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 76

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S++ + LG H++ +  +   +   V +++ H  ++   +SNDI LL+L      +  ++P
Sbjct: 49  SKIQVTLGAHNIKEQEKMQQII-PVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKP 107
Query: 220 VCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
           + LP++      G   +V GWG    PMG+ S TLQ++E+ V  + +C + ++ 
Sbjct: 108 LNLPRRNVKVKPGDVCYVAGWGKLG-PMGKYSDTLQEVELTVQEDQKCESYLKN 160

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F+   L NDI L++L  P  L   +  
Sbjct: 44  SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP+   +  G    + GWG T          LQ L+  VLS++ C +     I   M+
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSAYPGQITGNMI 161
Query: 280 C-----AAPDETQGTCFVPV 294
           C        D  QG    PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F+   L NDI L++L  P  L   +  
Sbjct: 52  SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 110
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
           V LP+   +  G    + GWG T          LQ L+  VLS++ C +     +    I
Sbjct: 111 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMI 169
Query: 275 GIGMLCAAPDETQGTCFVPV 294
            +G L    D  QG    PV
Sbjct: 170 CVGFLEGGKDSCQGDSGGPV 189

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQLDRPVPLT 214
           LG ++L + +E    RR VR+   H  + P ++           SND+ LL L  P  +T
Sbjct: 49  LGRNNLFK-DEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADIT 107
Query: 215 GTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
           G ++ + LP K E  +G      GWG T+      S  LQ + + +LSN +C    ++++
Sbjct: 108 GGVKVIDLPTK-EPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNV 166
Query: 275 GIGMLCAAPDE 285
              MLCA   E
Sbjct: 167 TDVMLCAGEME 177

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           LG ++L   +E   +  GV  +  H  ++ F++ NDIAL++L   V L  TIQ  CLP +
Sbjct: 70  LGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSE 129
Query: 226 GESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS------TVIEESIGIGM 278
           G          V GWG   +  G  +  LQ+    V+  A CS      T ++E+    M
Sbjct: 130 GSLLPQDYPCFVTGWG-RLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKET----M 184
Query: 279 LCAAPDETQGTC 290
           +CA  D     C
Sbjct: 185 VCAGGDGVISAC 196

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
           + G  A  G+FP+ V+I+ +G  +CGG+LLN + VLTAAHC+       + Q G+ + AG
Sbjct: 2   VGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVS-----GYAQSGFQIRAG 56
Query: 381 IVS 383
            +S
Sbjct: 57  SLS 59

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I  G  A  G++PWQV+I  +G+  CGG+L++E +VL+AAHC     P    ++ Y V  
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF----PSEHHKEAYEVKL 56
Query: 380 G 380
           G
Sbjct: 57  G 57

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I  G  A  G++PWQV+I  +G+  CGG+L++E +VL+AAHC     P    ++ Y V  
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF----PSEHHKEAYEVKL 56
Query: 380 G 380
           G
Sbjct: 57  G 57

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F+   L NDI L++L  P  L   +  
Sbjct: 44  SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
           V LP+   +  G    + GWG T          LQ L+  VLS++ C +     +    I
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMI 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
            +G L    D  QG    PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F+   L NDI L++L  P  L   +  
Sbjct: 44  SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
           V LP+   +  G    + GWG T          LQ L+  VLS++ C +     +    I
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMI 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
            +G L    D  QG    PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181

>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of Murine Thrombin Length = 259

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  +IAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
                I   M CA   PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           +G ++L   +E   +  GV  +  H  ++  +L NDIAL++L   V L+ TIQ  CLP+K
Sbjct: 57  VGKNNLEVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEK 116
Query: 226 GESFIGKR--GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIG--MLCA 281
            +S + K    +V GWG   +  G  +  LQ+    V+ +A CS +      +   M+CA
Sbjct: 117 -DSLLPKDYPCYVTGWG-RLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCA 174
Query: 282 APDETQGTC 290
             D     C
Sbjct: 175 GGDGVISAC 183

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + LG H L   +E + V   ++ ++ H  +       DIALLQL RP+  +  I+P+ LP
Sbjct: 54  VKLGAHQLDSYSEDAKVST-LKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Query: 224 QKGESFI-GKRGHVVGWG--VTSFPMGEPSPTLQKLEVKVLSNARCSTV 269
               SF  G    V GWG    S  +  P P LQ+LEV ++S   C+ +
Sbjct: 113 AANASFPNGLHCTVTGWGHVAPSVSLLTPKP-LQQLEVPLISRETCNAL 160

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I  G  A  G++PWQV+I  +G+  CGG+L++E +VL+AAHC     P    ++ Y V  
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF----PSEHHKEAYEVKL 56
Query: 380 G 380
           G
Sbjct: 57  G 57

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F+   L NDI L++L  P  L   +  
Sbjct: 44  SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
           V LP+   +  G    + GWG T          LQ L+  VLS++ C +     +    I
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMI 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
            +G L    D  QG    PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 162 LVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVC 221
           + + LG H++    ET  +   V + + H  ++P   SNDI LL+L R    T  ++P+ 
Sbjct: 51  MTVTLGAHNIKAKEETQQII-PVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLN 109
Query: 222 LPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG-IGML 279
           LP++      G   +V GWG  + P GE   TL ++++ V  +  C +  + S      +
Sbjct: 110 LPRRNAHVKPGDECYVAGWGKVT-PDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEI 168
Query: 280 CAAPDETQGTCF 291
           C    + +G  F
Sbjct: 169 CVGDSKIKGASF 180

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 162 LVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVC 221
           + + LG H++    ET  +   V + + H  ++P   SNDI LL+L R    T  ++P+ 
Sbjct: 51  MTVTLGAHNIKAKEETQQII-PVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLN 109
Query: 222 LPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG-IGML 279
           LP++      G   +V GWG  + P GE   TL ++++ V  +  C +  + S      +
Sbjct: 110 LPRRNAHVKPGDECYVAGWGKVT-PDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEI 168
Query: 280 CAAPDETQGTCF 291
           C    + +G  F
Sbjct: 169 CVGDSKIKGASF 180

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 52  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 110
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 111 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 168
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 169 VCVGFLEGGKDSCQGNSGGPV 189

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
           PVCLP +  +      G +G V GWG        +   G+PS  LQ + + ++    C  
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA 282
                I   M CA 
Sbjct: 176 STRIRITDNMFCAG 189

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN--DIALLQLDRPVPLTGTIQPVCLP 223
           LG H L+  NE   +   V +++ H  ++   LSN  DIALL+L  PV LT  IQ  CLP
Sbjct: 57  LGRHSLST-NEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLP 115
Query: 224 QKGESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--VIEESIGIGMLC 280
             G         +V GWG        P   LQ+ ++ V+  A CS       ++   M+C
Sbjct: 116 AAGTILPNNYVCYVTGWGRLQTNGASPD-ILQQGQLLVVDYATCSKPGWWGSTVKTNMIC 174
Query: 281 AAPDETQGTC 290
           A  D    +C
Sbjct: 175 AGGDGIISSC 184

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 5/49 (10%)
Query: 321 ILGGE-ADIGEFPWQVAIALD--GMF--FCGGALLNEHFVLTAAHCIMT 364
           ++GGE A    +PWQV++  D  G +   CGG L+++ +VLTAAHCI +
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS 49

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 54  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 112
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 113 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 170
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 171 VCVGFLEGGKDSCQGDAGGPV 191

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 20/144 (13%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
            L+  LG+HDL++ +     RR V +V+  S + P   ++DIALL+L +PV LT  + P+
Sbjct: 51  NLIAVLGEHDLSEHDGDEQSRR-VAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPL 109
Query: 221 CLPQKGES-----FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
           CLP++  S     F+ +   V GWG      G  +  LQ L V  L    C   +++S  
Sbjct: 110 CLPERTFSERTLAFV-RFSLVSGWG-QLLDRGATALVLQVLNVPRLMTQDC---LQQSRK 164
Query: 276 IG--------MLCAA-PDETQGTC 290
           +G        M CA   D ++ +C
Sbjct: 165 VGDSPNITEYMFCAGYSDGSKDSC 188

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G +   GE PWQV + ++G   CGG L+N  +V++AAHC 
Sbjct: 1   IVGGKDCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCF 43

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG H++ +   T      V+R + H  ++P   SNDI LLQL+R    T  ++P
Sbjct: 48  SSINVTLGAHNIKEQERTQQFI-PVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRP 106
Query: 220 VCLP-QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI 270
           + LP  K +   G+   V GWG  S  M   + TLQ++ + V  + +C  + 
Sbjct: 107 LRLPSSKAQVKPGQLCSVAGWGYVS--MSTLATTLQEVLLTVQKDCQCERLF 156

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 52  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 110
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 111 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 168
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 169 VCVGFLEGGKDSCQGDSGGPV 189

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 161 VCVGFLEGGKDSCQGDAGGPV 181

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 164 LHLGDHDLTQLNET-SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCL 222
           + LG + L+ + E+   + +GV+ +    + HP   SND+ L++L+R +  T  ++P+ +
Sbjct: 50  VRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPG-HSNDLMLIKLNRRIRPTKDVRPINV 108
Query: 223 PQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAA 282
                S  G +  V GWG T  P       LQ L + VLS  RC       I   M CA 
Sbjct: 109 SSHCPS-AGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAG 167
Query: 283 PDETQGTC 290
               + +C
Sbjct: 168 DKAGRDSC 175

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 54  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 112
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 113 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 170
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 171 VCVGFLEGGKDSCQGDSGGPV 191

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQLDRPVPLT 214
           LG ++  + +E S   R V + + H  F+  +L           SND+ LL+L +P  +T
Sbjct: 54  LGKNNFLE-DEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADIT 112
Query: 215 GTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
             ++P+ LP + E  +G      GWG T+    +    LQ + +K+L N  C    E  +
Sbjct: 113 DVVKPITLPTE-EPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKV 171
Query: 275 GIGMLCA 281
              MLCA
Sbjct: 172 TDAMLCA 178

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181

>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 131

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 320 IILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIMT 364
           I+ G EA  G +PWQV++    G  FCGG+L+NE++V+TAAHC +T
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT 46

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 190 HSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEP 249
           H  F  +  SND+ LL+L +P  +T T++P+ LP + E  +G      GWG  +    + 
Sbjct: 85  HIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTE-EPKLGSTCLASGWGSITPTKFQF 143
Query: 250 SPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAP-DETQGTC 290
           +  L  + +K+L N  C+    E +   MLCA   D  + TC
Sbjct: 144 TDDLYCVNLKLLPNEDCAKAHIEKVTDAMLCAGEMDGGKDTC 185

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
           I+ G + +    PW VA+     + CGG LL+ ++VLTAAHC
Sbjct: 1   IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHC 42

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 162 LVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVC 221
             + +GD + T+  E + +   V   + HS F       DIA+L+L  P+     + P C
Sbjct: 50  FTVRVGDRN-TEQEEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPAC 108
Query: 222 LPQKGES----FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIG 277
           LP+K  +       K G V G+G T    G  S TL+ LEV  +  + C      +I   
Sbjct: 109 LPEKDWAEATLMTQKTGIVSGFGRTH-EKGRLSSTLKMLEVPYVDRSTCKLSSSFTITPN 167
Query: 278 MLCAAPD 284
           M CA  D
Sbjct: 168 MFCAGYD 174

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G +   GE PWQ + +  +   FCGG +LNE +VLTAAHC+
Sbjct: 1   IVGGRDCAEGECPWQALLVNEENEGFCGGTILNEFYVLTAAHCL 44

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 66  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVAT 124
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 125 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 182
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 183 VCVGFLEGGKDSCQGDSGGPV 203

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V  T + +P+CLP KG+ + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGVT 242
           ++ ++ H ++     ++DIAL++L  P+  T   +P+ LP KG+ S I     V GWG  
Sbjct: 76  IKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGF- 134
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE-SIGIGMLCAAPDE 285
           S   GE    LQK+ + +++N  C    ++  I   M+CA   E
Sbjct: 135 SKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKE 178

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+ G E+  GE+PWQV++ +        CGG+L+   +VLTAAHC   G PL   QD + 
Sbjct: 1   IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHC-FDGLPL---QDVWR 56
Query: 377 VLAGIV 382
           + +GI+
Sbjct: 57  IYSGIL 62

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGVT 242
           ++ ++ H ++     ++DIAL++L  P+  T   +P+ LP KG+ S I     V GWG  
Sbjct: 76  IKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTNCWVTGWGF- 134
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE-SIGIGMLCAAPDE 285
           S   GE    LQK+ + +++N  C    ++  I   M+CA   E
Sbjct: 135 SKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKE 178

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+ G  +  GE+PWQV++ +        CGG+L+   +VLTAAHC   G PL   QD + 
Sbjct: 1   IVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHC-FDGLPL---QDVWR 56
Query: 377 VLAGIVS 383
           + +GI++
Sbjct: 57  IYSGILN 63

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 187 VLFHSHF-HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK-GESFIGKR--GHVVGWGVT 242
           V  H  + H     NDIAL++L+  V +   I P+CLP+K  ESF+     G   GWG+T
Sbjct: 73  VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT 132
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCA 281
               G  +  L  +++ ++ + +C+   E+      S+   MLCA
Sbjct: 133 Q--RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCA 175

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 187 VLFHSHF-HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK-GESFIGKR--GHVVGWGVT 242
           V  H  + H     NDIAL++L+  V +   I P+CLP+K  ESF+     G   GWG+T
Sbjct: 73  VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT 132
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCA 281
               G  +  L  +++ ++ + +C+   E+      S+   MLCA
Sbjct: 133 Q--RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCA 175

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 154 LRDTPV---SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP 210
           LRD+ +   S+  + LG H   + +E      GV+    H  + P    ND+AL++L   
Sbjct: 210 LRDSDLLSPSDFKIILGKHWRLRSDENEQ-HLGVKHTTLHPQYDPNTFENDVALVELLES 268
Query: 211 VPLTGTIQPVCLPQKGESFIGKRGHVVGWG---VTSFPMGEPSPTLQKLEVKVLSNARCS 267
             L   + P+CLP+ G    G    V GWG   +  FP      TL ++E+ ++ ++ C 
Sbjct: 269 PVLNAFVMPICLPE-GPQQEGAMVIVSGWGKQFLQRFP-----ETLMEIEIPIVDHSTCQ 322
Query: 268 TV---IEESIGIGMLCAAPDE 285
                +++ +   M+CA   E
Sbjct: 323 KAYAPLKKKVTRDMICAGEKE 343

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 314 RQPRRRIILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCI 362
           R+   +I  G  A  G  PW   ++ L+G  FCGG+LL   +++TAAHC+
Sbjct: 150 RKLMAQIFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCL 199

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 52  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 110
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   L+ L+  +L  A C       + +  
Sbjct: 111 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLKCLDAPLLPQADCEASYPGKITDNM 168
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 169 VCVGFLEGGKDSCQGDSGGPV 189

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG H++ +   T      V+R + H  ++P   SN+I LLQL+R    T  ++P
Sbjct: 48  SSINVTLGAHNIKEQERTQQFI-PVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRP 106
Query: 220 VCLP-QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI 270
           + LP  K +   G+   V GWG  S  M   + TLQ++ + V  + +C  + 
Sbjct: 107 LRLPSSKAQVKPGQLCSVAGWGYVS--MSTLATTLQEVLLTVQKDCQCERLF 156

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 187 VLFHSHF-HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK-GESFIGKR--GHVVGWGVT 242
           V  H  + H     NDIAL++L+  V +   I P+CLP+K  ESF+     G   GWG+T
Sbjct: 159 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT 218
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCAA 282
               G  +  L  +++ ++ + +C+   E+      S+   MLCA 
Sbjct: 219 Q--RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAG 262

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V  T + +P+CLP KG+ + I     V GWG 
Sbjct: 462 GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGY 521
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 522 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 565

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 21/100 (21%)
Query: 281 AAPDETQGTCFVPVSP--------------VGYTKKHLQQFHQGTTYRQPRRRIILGGEA 326
           A+ +E +G C++ +S                GYT +  +  ++ TT  +PR   I+GG A
Sbjct: 337 ASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPR---IVGGTA 393
Query: 327 DI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
            + GE+PWQV +          CGG+++   ++LTAAHC 
Sbjct: 394 SVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCF 433

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
           II G     G  PWQVA+       CGG L+NE +VLTAAHC M 
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMN 45

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRR---------VLFHSHFHPFV-LSNDIALLQLDRPVPL 213
           + LG H+L++  +T+   +             +L   +  P+  +S+D+ LL+L +P  +
Sbjct: 49  IWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARI 108
Query: 214 TGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEES 273
           T  ++ + LP + E  +G   +  GWG+ S      S TLQ +E+++ SN +C+    E 
Sbjct: 109 TDAVKILDLPTQ-EPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEK 167
Query: 274 IGIGMLCAAPDETQGT 289
           +   +LCA   +  G+
Sbjct: 168 MTEFVLCATHRDDSGS 183

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           II G E +    PWQVA+   G F CGG L++  +VLTAAHC+
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM 43

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
           II G     G  PWQVA+       CGG L+NE +VLTAAHC M 
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMN 45

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHP--FVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           +G+H+L Q N T     GV++++ H +++        DIALL+L + V L   +Q   LP
Sbjct: 57  VGEHNLNQNNGTEQYV-GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
Query: 224 QKGESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESIGIGMLC 280
           + G         ++ GWG+T    G+ + TLQ+  +  +  A C  S+    ++   M+C
Sbjct: 116 RAGTILANNSPCYITGWGLTR-TNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVC 174
Query: 281 AAPDETQGTC 290
           A  D  +  C
Sbjct: 175 AGGDGVRSGC 184

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 154 LRDTPV---SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP 210
           LRD+ +   S+  + LG H   + +E      GV+    H  + P    ND+AL++L   
Sbjct: 55  LRDSDLLSPSDFKIILGKHWRLRSDENEQ-HLGVKHTTLHPQYDPNTFENDVALVELLES 113
Query: 211 VPLTGTIQPVCLPQKGESFIGKRGHVVGWG---VTSFPMGEPSPTLQKLEVKVLSNARCS 267
             L   + P+CLP+ G    G    V GWG   +  FP      TL ++E+ ++ ++ C 
Sbjct: 114 PVLNAFVMPICLPE-GPQQEGAMVIVSGWGKQFLQRFP-----ETLMEIEIPIVDHSTCQ 167
Query: 268 TV---IEESIGIGMLCAAPDE 285
                +++ +   M+CA   E
Sbjct: 168 KAYAPLKKKVTRDMICAGEKE 188

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S L + LG+H + ++NE +        V+ H ++  + ++NDI L++L +P  L   +  
Sbjct: 44  SVLRVRLGEHHI-RVNEGTEQYISSSSVIRHPNYSSYNINNDIMLIKLTKPATLNQYVHA 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP +  +       V GWG T   + +    LQ L + +LS+A C+      I   M 
Sbjct: 103 VALPTECAAD-ATMCTVSGWGNTMSSVAD-GDKLQCLSLPILSHADCANSYPGMITQSMF 160
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+N+I L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPLTGTI 217
           V +L++ +G H  T+          + ++  H  ++    L  DIALL+L RP+ L+  I
Sbjct: 56  VDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYI 115
Query: 218 QPVCLPQKGES----FIGKRGHVVGWG 240
            PVCLP K  +      G +G V GWG
Sbjct: 116 HPVCLPDKQTAAKLLHAGFKGRVTGWG 142

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A++G  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       I   M
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 279 LC 280
           +C
Sbjct: 161 VC 162

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    GE S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    GE S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 317 RRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           R+RI+ G  A +G+ PWQVAI       CGG  +   ++LTAAHC+        +   Y 
Sbjct: 319 RKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRAS-----KTHRYQ 373
Query: 377 VLAGIVSYGVTGCAIMPSYPDLYTRVSEYI 406
           +   +V +          +PDL   V EY+
Sbjct: 374 IWTTVVDW---------IHPDLKRIVIEYV 394

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V    + +P+CLP KG+ + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
            +    +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RAL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F     +NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       I   M
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 279 LC 280
           +C
Sbjct: 161 VC 162

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 187 VLFHSHF-HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK-GESFIGKR--GHVVGWGVT 242
           V  H  + H     NDIAL++L+  V +   I P+CLP+K  ESF+     G   GWG+T
Sbjct: 234 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT 293
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCA 281
               G  +  L  +++ ++ + +C+   E+      S+   MLCA
Sbjct: 294 Q--RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCA 336

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 314 RQP---RRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           R+P   ++RII G +ADI  FPWQV        + GGAL+NE++VLTAAH +
Sbjct: 74  REPFEEKQRIIGGSDADIKNFPWQVFFDNP---WAGGALINEYWVLTAAHVV 122

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E         +++ H +F    L+N+I L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGDEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 20/144 (13%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
            L+  LG+HDL++ +     RR V +V+  S + P   ++DIALL+L +PV LT  + P+
Sbjct: 51  NLIAVLGEHDLSEHDGDEQSRR-VAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPL 109
Query: 221 CLPQKGES-----FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
           CLP++  S     F+ +   V GWG      G  +  L  L V  L    C   +++S  
Sbjct: 110 CLPERTFSERTLAFV-RFSLVSGWG-QLLDRGATALELMVLNVPRLMTQDC---LQQSRK 164
Query: 276 IG--------MLCAA-PDETQGTC 290
           +G        M CA   D ++ +C
Sbjct: 165 VGDSPNITEYMFCAGYSDGSKDSC 188

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+GG+    GE PWQV + ++G   CGG L+N  +V++AAHC 
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCF 43

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F     +NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
           V LP       G +  + GWG T S  + EP   LQ L+  +L  A C       + +  
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASSSFIITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
           + +G L    D  QG    PV
Sbjct: 161 VCVGFLEGGKDACQGDSGGPV 181

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHP--FVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           +G+H+L Q N+ +    GV++++ H +++        DIALL+L + V L   +Q   LP
Sbjct: 57  VGEHNLNQ-NDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
Query: 224 QKGESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESIGIGMLC 280
           + G         ++ GWG+T    G+ + TLQ+  +  +  A C  S+    ++   M+C
Sbjct: 116 RAGTILANNSPCYITGWGLTR-TNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVC 174
Query: 281 AAPDETQGTC 290
           A  D  +  C
Sbjct: 175 AGGDGVRSGC 184

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V    + +P+CLP KG+ + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 164 LHLGDHDLT---QLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
           + LGDH L    Q  +   V + ++   +++  +P   S+DI L++L     L   ++PV
Sbjct: 49  VRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNS-NPEDHSHDIMLIRLQNSANLGDKVKPV 107
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
            L       +G++  + GWG  + P      TL   EVK+ S  +C       I  GM+C
Sbjct: 108 QLANLCPK-VGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVC 166
Query: 281 AAPDETQGTC 290
           A       TC
Sbjct: 167 AGSSNGADTC 176

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V    + +P+CLP KG+ + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 7/136 (5%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P  LP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP 110
Query: 224 QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC--- 280
               +  G +  + GWG T+    +    LQ L+  VLS A+C       I   M C   
Sbjct: 111 TAPPA-TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGF 169
Query: 281 --AAPDETQGTCFVPV 294
                D  QG    PV
Sbjct: 170 LEGGKDSCQGDSGGPV 185

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G     GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H  +    L+NDI L++L     +   +  
Sbjct: 44  SRIQVRLGEHNIEVL-EGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    +  G +  + GWG T+    +    LQ L+  VLS A+C       I   M 
Sbjct: 103 ISLPTAPPA-TGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEASYPGKITSNMF 161
Query: 280 C-----AAPDETQGTCFVPV 294
           C        D  QG    PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHP--FVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           +G+H+L Q N T     GV++++ H +++        DIALL+L + V L   +Q   LP
Sbjct: 57  VGEHNLNQNNGTEQYV-GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
Query: 224 QKGESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESIGIGMLC 280
           + G         ++ GWG+T    G+ + TLQ+  +  +  A C  S+    ++   M+C
Sbjct: 116 RAGTILRNNSPCYITGWGLTR-TNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVC 174
Query: 281 AAPDETQGTC 290
           A  D  +  C
Sbjct: 175 AGGDGVRSGC 184

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQL 207
           V +  + LG + L Q  E S   R V +   H  F+  +L           S+D+ LL+L
Sbjct: 44  VDQYEVWLGKNKLFQ-EEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRL 102
Query: 208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
            +P  +T  ++P+ LP K E   G +    GWG  +    +    LQ + + +L N  C+
Sbjct: 103 SKPADITDVVKPIALPTK-EPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCA 161
Query: 268 TVIEESIGIGMLCAA 282
            V  + +   MLCA 
Sbjct: 162 KVYLQKVTDVMLCAG 176

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
           ++ G   +    PWQVA+       CGG LL+ ++VLTAAHC
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHC 42

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
           I+ G E + GE+PWQ ++  DG   CG  L+N  ++++AAHC  T
Sbjct: 1   IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTT 45

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
           I+ G EA   ++PWQV++ + G   M FCGG+L++  +VLTAAHC+
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV 46

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  + +G  + AG+VS+G  GCA  P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
           I+ G EA   ++PWQV++ + G   M FCGG+L++  +VLTAAHC+
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV 46

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  + +G  + AG+VS+G  GCA  P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
           V LP       G +  + GWG T          LQ L+  +L  A C       + +  +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDNMV 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
            +G L    D  QG    PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           PR RI+ G EA+    P+  ++ L+G   CGG L+ E +VL+AAHC+
Sbjct: 4   PRGRILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 50

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
           I+ G EA   ++PWQV++ + G   M FCGG+L++  +VLTAAHC+
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV 46

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  + +G  + AG+VS+G  GCA  P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238

>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-D1 (Smipp-S-D1) Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           II G ++DI + PW V + +D   FCGG++L  +FV+TAA C+
Sbjct: 1   IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCV 43

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H  +    L+NDI L++L     +   +  
Sbjct: 44  SRIQVRLGEHNIEVL-EGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    +  G +  + GWG T+    +    LQ L+  VLS A+C       I   M 
Sbjct: 103 ISLPTAPPA-TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMF 161
Query: 280 C-----AAPDETQGTCFVPV 294
           C        D  QG    PV
Sbjct: 162 CVGFLEGGKDSCQGDAGGPV 181

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V  T + +P+ LP KGE + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++  L E +       +++ H +F    L+NDI L++L  PV L   +  
Sbjct: 44  SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
           + LP       G +  + GWG T          LQ L+  +L  A C       + +  +
Sbjct: 103 IALPSSCAP-AGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDNMV 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
            +G L    D  QG    PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G +A +G++P+QV++ L G   CG ++L+ + VLTAAHC+   G     +   HV  
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCV--DGLSNLNRLKVHVGT 58
Query: 380 GIVS-----YGVTGCAIMPSYPDLYTR 401
             +S     Y V    +  +Y D   R
Sbjct: 59  NYLSESGDVYDVEDAVVNKNYDDFLLR 85

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GES--FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES     K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 67  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 125
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 126 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 184
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 185 CAGYDTKQ 192

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 315 QPRR------RIILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           QP R      RI+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 5   QPERGDNNLTRIVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 59

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           L +G+HD +    T      V  +  + ++ P  L ND+++++    +     + P+C P
Sbjct: 55  LVVGEHD-SSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAP 113
Query: 224 QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV-IEESIGIGMLCA 281
                ++ ++    GWG  +         L+ + + + +NA C  V   ++I   M+CA
Sbjct: 114 DPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICA 172

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 320 IILGGEADIGEFPWQVAI--ALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
           I+ G EA   EFPWQV++        FCGG+++N+ +V+ AAHC+    P
Sbjct: 1   IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAP 50

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GES--FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES     K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 80

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           II G E +    PWQVAI     F CGG L+N  +VLTAAHC         + D Y V  
Sbjct: 1   IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHC---------KNDNYEVWL 51
Query: 380 G 380
           G
Sbjct: 52  G 52

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V  T + +P+ LP KG+ + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V  T + +P+ LP KG+ + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
           F  G    +P++   R++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+
Sbjct: 546 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 605

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 4/47 (8%)
Query: 364 TGGPL-TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
           +GGPL  FE+D Y +L G+ S+G+ GCA  P+ P +Y RVS ++ WI
Sbjct: 741 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWI 784

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
           + +GD + T   E       V  V+ H+ F       DIA+L+L  P+     + P CLP
Sbjct: 52  VRVGDRN-TAAEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           ++   ES +   K G V G+G T    G  S  L+ LEV  +    C       I   M 
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
           CA  D  Q
Sbjct: 170 CAGYDTKQ 177

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E   GE PWQ + I  +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-I1 (Smipp-S-I1) Length = 228

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 323 GGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIMTGGPLTF 370
           G + DI + PW VA+     +    CGGA+L++ FVLTAAHC+    P T 
Sbjct: 3   GEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETI 53

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
            L + LG H+L Q   +      VR V+ H  +       DI LL+L RP  L+  IQP+
Sbjct: 47  NLQVFLGKHNLRQQESSQEQSSVVRAVI-HPDYDAASHDQDIMLLRLARPAKLSELIQPL 105
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
            L ++  S      H++GWG T+   G+   T+Q   + ++S   C       I   MLC
Sbjct: 106 PL-ERDCSAQTTSCHILGWGKTAD--GDFPDTIQCAYIHLVSREECEHAYPGQITQNMLC 162
Query: 281 AAPDETQG 288
           A  DE  G
Sbjct: 163 AG-DEKYG 169

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
           +++ GG  D    P+Q A+   G   CGG L++  +VLTAAHC
Sbjct: 1   KLVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC 43

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCI 362
           I+ G EA   ++PWQV++ +     M FCGG+L++  +VLTAAHC+
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV 46

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  + +G  + AG+VS+G  GCA  P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCI 362
           I+ G EA   ++PWQV++ +     M FCGG+L++  +VLTAAHC+
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV 46

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  + +G  + AG+VS+G  GCA  P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L++ +G H  T+          + ++  H  ++    L  DIAL++L +PV  +  I 
Sbjct: 57  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQK--GESFI--GKRGHVVGWG 240
           PVCLP +    S +  G +G V GWG
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWG 142

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 131

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 320 IILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHC 361
           I+ G +A  G +PWQV++    G  FCGG+L++E +V+TAAHC
Sbjct: 1   IVNGEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC 43

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
            L + LG H+L Q   +      VR V+ H  +       DI LL+L RP  L+  IQP+
Sbjct: 46  NLQVFLGKHNLGQQESSQEQSSVVRAVI-HPDYDAASHDQDIMLLRLARPAKLSELIQPL 104
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
            L ++  S      H++GWG T+   G+   T+Q   + ++S   C       I   MLC
Sbjct: 105 PL-ERDCSAQTTSCHILGWGKTAD--GDFPDTIQCAYIHLVSREECEHAYPGQITQNMLC 161
Query: 281 AAPDETQG 288
           A  DE  G
Sbjct: 162 AG-DEKYG 168

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
           ++ GG  D    P+Q A+   G   CGG L++  +VLTAAHC
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC 42

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
           V R++ H  F+      DIALL+L+ PV ++  +  V LP   E+F  G    V GWG  
Sbjct: 74  VSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV 133
Query: 243 SF--PMGEPSPTLQKLEVKVLSNARCST 268
               P+  P P L++++V ++ N  C  
Sbjct: 134 DNDEPLPPPFP-LKQVKVPIMENHICDA 160

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
           I+ G EA   ++PWQV++ +     M FCGG+L++  +VLTAAHC+
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCL 46

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  + +G  + AG+VS+   GCA  P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWD-EGCA-QPNRPGIYTRVTYYLDWIH 238

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
           F  G    +P++   R++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+
Sbjct: 5   FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 64

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  FE+D Y +L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 200 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 244

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 193 FHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWG 240
           FHP   + DI L++L + VP+   + P+CLP K    +G  G+V GWG
Sbjct: 179 FHPDNSTVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWG 226

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
           F  G    +P++   R++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+
Sbjct: 4   FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 63

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
            GGPL  FE+D Y +L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 199 AGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 243

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
           F  G    +P++   R++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+
Sbjct: 5   FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 64

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
            GGPL  FE+D Y +L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 200 AGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 244

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
           F  G    +P++   R++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+
Sbjct: 2   FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 61

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  FE+D Y +L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 197 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 241

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 315 QPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           + R+RII G +A +G FPWQV   + G    GGALL + ++LTAAH +
Sbjct: 85  EQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTL 130

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
           F  G    +P++   R++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+
Sbjct: 3   FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 62

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
            GGPL  FE+D Y +L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 198 AGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 242

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           +   + LG H    LNE    R    + +  +     VL  DI L++LD+P+  +  I P
Sbjct: 44  TNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNMSEVLDKDIMLIKLDKPISNSKHIAP 103
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFP 245
           + LP    S +G    ++GWG  + P
Sbjct: 104 LSLPSNPPS-VGSVCRIMGWGSITIP 128

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 315 QPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           + R+RII G +A +G FPWQV   + G    GGALL + ++LTAAH +
Sbjct: 85  EQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTL 130

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
           F  G    +P++   R++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+
Sbjct: 2   FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 61

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
            GGPL  FE+D Y +L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 197 AGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 241

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 158 PVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN-DIALLQL----DRPVP 212
           P   + + LG H   +  + +    G+ + + ++ +  F  S+ D+ L++L    DR   
Sbjct: 47  PRDSVSVVLGQHFFNRTTDVTQTF-GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT 105
Query: 213 LTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--V 269
            +  +QP+CLP+ G +F  G +  + GWG     +   S +L++  V ++++ +CS+  V
Sbjct: 106 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 165
Query: 270 IEESIGIGMLCA 281
               I   MLCA
Sbjct: 166 YGADISPNMLCA 177

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  E++G   L GI+S+G  GC  +   P +YTRV+ Y+ WI+
Sbjct: 191 SGGPLACEKNGVAYLYGIISWG-DGCGRL-HKPGVYTRVANYVDWIN 235

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 158 PVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN-DIALLQL----DRPVP 212
           P   + + LG H   +  + +    G+ + + ++ +  F  S+ D+ L++L    DR   
Sbjct: 47  PRDSVSVVLGQHFFNRTTDVTQTF-GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT 105
Query: 213 LTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--V 269
            +  +QP+CLP+ G +F  G +  + GWG     +   S +L++  V ++++ +CS+  V
Sbjct: 106 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 165
Query: 270 IEESIGIGMLCA 281
               I   MLCA
Sbjct: 166 YGADISPNMLCA 177

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  E++G   L GI+S+G  GC  +   P +YTRV+ Y+ WI+
Sbjct: 191 SGGPLACEKNGVAYLYGIISWG-DGCGRL-HKPGVYTRVANYVDWIN 235

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V    + +P+ LP KG+ + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V    + +P+ LP KG+ + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
           GV+ ++ H  +       DIALL+L+  V    + +P+ LP KG+ + I     V GWG 
Sbjct: 75  GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
                 +   TLQK ++ +++N  C        I   M+CA   E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
           I+GG A + GE+PWQV +          CGG+++   ++LTAAHC
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 313 YRQPRRRIILGGEADIGEFPWQVAI------ALDGMFFCGGALLNEHFVLTAAHCIMTGG 366
           Y QP+ RI  G  ADI   PWQ AI      +    F CGG L++  ++L+AAHC     
Sbjct: 7   YSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERF 66
Query: 367 P 367
           P
Sbjct: 67  P 67

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
           +GGPL    DG   L GI+S+G+ GC      P +YT+V+ Y+ WI  N
Sbjct: 216 SGGPLVCLNDGRMTLVGIISWGL-GCG-QKDVPGVYTKVTNYLDWIRDN 262

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 158 PVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN-DIALLQL----DRPVP 212
           P   + + LG H   +  + +    G+ + + ++ +  F  S+ D+ L++L    DR   
Sbjct: 82  PRDSVSVVLGQHFFNRTTDVTQTF-GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT 140
Query: 213 LTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--V 269
            +  +QP+CLP+ G +F  G +  + GWG     +   S +L++  V ++++ +CS+  V
Sbjct: 141 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 200
Query: 270 IEESIGIGMLCA 281
               I   MLCA
Sbjct: 201 YGADISPNMLCA 212

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  E++G   L GI+S+G  GC  +   P +YTRV+ Y+ WI+
Sbjct: 226 SGGPLACEKNGVAYLYGIISWG-DGCGRL-HKPGVYTRVANYVDWIN 270

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E +    PWQV +A  G   CGG L++  +VLTAAHCI
Sbjct: 1   IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCI 43

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 VSLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPVSPVG 298
           CA       D  QG    PV   G
Sbjct: 162 CAGYLEGGKDSCQGDSGGPVVCAG 185

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 128

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 323 GGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHC 361
           G +A  G +PWQV++    G  FCGG+L++E +V+TAAHC
Sbjct: 1   GEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC 40

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
           +I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+
Sbjct: 5   KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 63
Query: 379 AG 380
            G
Sbjct: 64  EG 65

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
           +I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+
Sbjct: 6   KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 64
Query: 379 AG 380
            G
Sbjct: 65  EG 66

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ--KGESFIGKRGHVVGW 239
           R V +++ H  +     +NDIAL+++  PV     I P CLPQ   G   + +   V GW
Sbjct: 82  RYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGW 141
Query: 240 GVTSFPMGEPSPTLQKLEVKVLSNARCSTV 269
           G         SP LQ+  V ++    C++ 
Sbjct: 142 GFLQENARRTSPMLQEARVDLIDLGLCNST 171

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 64  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 122
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 123 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 181
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 182 CAGYLEGGKDSCQGDAGGPV 201

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
           +I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+
Sbjct: 20  KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 78
Query: 379 AG 380
            G
Sbjct: 79  EG 80

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 153 QLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVP 212
           Q R T      + LG H L++ NE S     +++ +  S       SNDI L++L     
Sbjct: 45  QYRFTKGQSPTVVLGAHSLSK-NEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAK 103
Query: 213 LTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
           L   ++ + +  K     G +  V GWG T      PS TL+++ V VLS   C++
Sbjct: 104 LNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNS 159

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 58  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 116
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 117 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 175
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 176 CAGYLEGGKDSCQGDSGGPV 195

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
           +I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+
Sbjct: 14  KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 72
Query: 379 AG 380
            G
Sbjct: 73  EG 74

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           + + + LG+H++  L         V+ ++ H  ++   L NDI L++L  P  +   +  
Sbjct: 44  TRIQVRLGEHNIKVLEGNEQFINAVK-IIRHPKYNRDTLDNDIMLIKLSSPAVINARVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           + LP    +  G    + GWG T SF    P   L+ L+  VL+ A C       I   M
Sbjct: 103 ISLPTAPPA-AGTECLISGWGNTLSFGADYPD-ELKCLDAPVLTQAECKASYPGKITNSM 160
Query: 279 LC 280
            C
Sbjct: 161 FC 162

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
            + ++LG H+L  LN+ +  R    +    +  +  +   DI L++L+RPV  +  I P+
Sbjct: 45  NMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPL 104
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
            LP    S +G    ++GWG  + P            + +L  A C     + +    LC
Sbjct: 105 SLPSNPPS-VGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAY-KGLAATTLC 162
Query: 281 AA 282
           A 
Sbjct: 163 AG 164

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ--KGESFIGKRGHVVGW 239
           R V  ++ H  +   +  NDIAL+++  PVP    I P CLPQ   G     +   V GW
Sbjct: 82  RFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGW 141
Query: 240 GVTSFPMGEPSPTLQKLEVKVLSNARCST 268
           G         SPTLQ+  V ++    C++
Sbjct: 142 GYLKEKGPRTSPTLQEARVALIDLELCNS 170

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 320 IILGGEADIGEFPWQVAIAL------DGMFFCGGALLNEHFVLTAAHCI 362
           ++ G  A+ G +PW V++ +           CGG LLN H+VLTAAHC 
Sbjct: 1   VVGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCF 49

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 162 CAGXLEGGKDSCQGDSGGPV 181

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCXKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 64  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 122
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 123 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 181
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 182 CAGYLEGGKDSCQGDSGGPV 201

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
           +I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+
Sbjct: 20  KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 78
Query: 379 AG 380
            G
Sbjct: 79  EG 80

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CAAPDETQG 288
           CA   E +G
Sbjct: 162 CAYGLEGKG 170

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 5/138 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA---APDETQGTCFVPV 294
           CA     D  QG    PV
Sbjct: 162 CAGLEGGDSCQGDSGGPV 179

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
           P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ G
Sbjct: 13  PYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEG 60

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 315 QPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           + R++II G +A +G FPWQV   + G    GGALL + ++LTAAH +
Sbjct: 153 EQRQQIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTL 198

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 162 CAGYLEGGKDSCQGDXGGPV 181

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+LLN  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLLNSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLXSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           + + + LG+H++  L E +       +++ H  ++   L NDI L++L  P  +   +  
Sbjct: 44  TRIQVRLGEHNIKVL-EGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           + LP    +  G    + GWG T SF    P   L+ L+  VL+ A C       I   M
Sbjct: 103 ISLPTAPPA-AGTECLISGWGNTLSFGADYPD-ELKCLDAPVLTQAECKASYPGKITNSM 160
Query: 279 LC 280
            C
Sbjct: 161 FC 162

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           ILGG EA+    P+  ++ L+G   CGG L+ E +VL+AAHC+
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           ILGG EA+    P+  ++ L+G   CGG L+ E +VL+AAHC+
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           ILGG EA+    P+  ++ L+G   CGG L+ E +VL+AAHC+
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           + + + LG+H++  L E +       +++ H  ++   L NDI L++L  P  +   +  
Sbjct: 44  TRIQVRLGEHNIKVL-EGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           + LP    +  G    + GWG T SF    P   L+ L+  VL+ A C       I   M
Sbjct: 103 ISLPTAPPA-AGTECLISGWGNTLSFGADYPD-ELKCLDAPVLTQAECKASYPGKITNSM 160
Query: 279 LC 280
            C
Sbjct: 161 FC 162

>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin Length = 70

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           ILGG EA+    P+  ++ L+G   CGG L+ E +VL+AAHC+
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
           F  G    +P++   R++ G  A    +PWQV++    G  FCGG L++  +VLTAAHC+
Sbjct: 1   FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGQHFCGGTLISPEWVLTAAHCL 60

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  FE+D Y +L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 196 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 240

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS + C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In Complex With Trypsin Length = 224

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin Length = 81

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 198 LSNDIALLQLDRPVPLTGTIQPVCLPQK--GESFI--GKRGHVVGWG 240
           L  DIAL++L +PV  +  I PVCLP +    S +  G +G V GWG
Sbjct: 23  LDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 69

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           LG H+L++   T  V   V+R+ F + + P  L NDI +LQL+    +   +Q   LP +
Sbjct: 55  LGAHNLSRREPTRQVF-AVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
           G     G +   +GWG+     G  S  LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           LG H+L++   T  V   V+R+ F + + P  L NDI +LQL+    +   +Q   LP +
Sbjct: 55  LGAHNLSRREPTRQVF-AVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
           G     G +   +GWG+     G  S  LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150

>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           LG H+L++   T  V   V+R+ F + + P  L NDI +LQL+    +   +Q   LP +
Sbjct: 55  LGAHNLSRREPTRQVF-AVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
           G     G +   +GWG+     G  S  LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
           I+ G +A   +FP+  +I   G  FCGGAL++  FV+TAA C  +  P
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNP 48

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
           +I G E DI E  + VA      FFCGG L+N  +V+TAAHC  T
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDST 45

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
           +I G E DI E  + VA      FFCGG L+N  +V+TAAHC  T
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDST 45

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
           I+ G +A   +FP+  +I   G  FCGGAL++  FV+TAA C  +  P
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNP 48

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  + E +       + + H  +    L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYDSNTLNNDIMLIKLKSAASLDSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
           CA       D  QG    PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  ++DG   LAGIVS+G   C+   S P +Y+RV+  + W+ 
Sbjct: 49  SGGPLVCQKDGVWTLAGIVSWGSGVCST--STPGVYSRVTALMPWVQ 93

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl 101, 146 Length = 218

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           LG H+L++   T  V   V+R+ F   + P  L NDI +LQL+    +   +Q   LP +
Sbjct: 55  LGAHNLSRREPTRQVF-AVQRI-FEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
           G     G +   +GWG+     G  S  LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  ++DG   LAGIVS+G   C+   S P +Y+RV+  + W+ 
Sbjct: 49  SGGPLVCQKDGVWTLAGIVSWGSGVCST--STPAVYSRVTALMPWVQ 93

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
           LG H+L++   T  V   V+R+ F   + P  L NDI +LQL+    +   +Q   LP +
Sbjct: 55  LGAHNLSRREPTRQVF-AVQRI-FEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
           G     G +   +GWG+     G  S  LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
           G
Sbjct: 60  G 60

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
           F  G    +P++    ++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+
Sbjct: 2   FDCGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 61

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  FE+D Y +L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 197 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 241

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
            + + LG H     NE   +R    +    +   P  L  DI L++L RPV  +  I PV
Sbjct: 48  NIRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPV 107
Query: 221 CLPQKGESFIGKRGHVVGWG---VTSFP 245
            LP +    +G R  ++GWG    T++P
Sbjct: 108 SLPSRSRG-VGSRCRIMGWGKISTTTYP 134

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
           E+ + LG HD+ +  E++  +  V + + H  ++     +DI LL+L++ V LT  +  V
Sbjct: 50  EITVILGAHDVRK-RESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVV 108
Query: 221 CLPQKGESFI--GKRGHVVGWGVTSFPMGEP-SPTLQKLEVKVLSNARC 266
            LP   + FI  G      GWG T   + +P S TL+++E++++    C
Sbjct: 109 PLPSPSD-FIHPGAMCWAAGWGKTG--VRDPTSYTLREVELRIMDEKAC 154

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           ILGG EA+    P+  ++ ++G   CGG L+ E +VL+AAHC+
Sbjct: 1   ILGGREAEAHARPYMASVQVNGEHLCGGVLVAEQWVLSAAHCL 43

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG H++ Q  E +      RR + H  ++   + NDI LLQL R V     + P
Sbjct: 48  SNINVTLGAHNI-QRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNP 106
Query: 220 VCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC 266
           V LP+  E    G    V GWG  S   G  + TL++++++V  + +C
Sbjct: 107 VALPRAQEGLRPGTLCTVAGWGRVSMRRG--TDTLREVQLRVQRDRQC 152

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  +++G   L GIVS+G + C+   S P +Y RV+  + W+ 
Sbjct: 47  SGGPLVCKKNGAWTLVGIVSWGSSTCST--STPGVYARVTALVNWVQ 91

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  +++G   L GIVS+G + C+   S P +Y RV+  + W+ 
Sbjct: 46  SGGPLVCKKNGAWTLVGIVSWGSSTCST--STPGVYARVTALVNWVQ 90

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G E +    PWQ A+     F CGG L++  +VLTAAHCI
Sbjct: 1   IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI 43

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 313 YRQPRRRIILGGEADIGEFPWQVAIALDGM------FFCGGALLNEHFVLTAAHCI 362
           Y++P+     G   DI   PWQ AI           F CGG L++  +VLTAAHC 
Sbjct: 7   YKEPQLHSTGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWVLTAAHCF 62

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG H++ Q  E +      RR + H  ++   + NDI LLQL R V     + P
Sbjct: 48  SNINVTLGAHNI-QRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNP 106
Query: 220 VCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC 266
           V LP+  E    G    V GWG  S   G  + TL++++++V  + +C
Sbjct: 107 VALPRAQEGLRPGTLCTVAGWGRVSMRRG--TDTLREVQLRVQRDRQC 152

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 185 RRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE---SFIGKRGHVVGWGV 241
            R++ HS F+P    ND+AL+++   V  T  IQP+ LP   E    F      V GWG 
Sbjct: 72  ERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQ 130
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESIGIGMLCAAPDETQGTCF 291
           ++      +  LQ     V+ N RC+      +I ES     +C    + +  CF
Sbjct: 131 SN----TDTVILQYTYNLVIDNDRCAQEYPPGIIVES----TICGDTSDGKSPCF 177

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
           +GGPL    DG   L GI+S+G+ GC      P +YT+V+ Y+ WI  N
Sbjct: 203 SGGPLVCLNDGRMTLVGIISWGL-GCG-QKDVPGVYTKVTNYLDWIRDN 249

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
           +I G E +I E    VA      FFC G L+NE +VLTAAHC  T
Sbjct: 1   VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNT 45

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	4e-43
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	1e-13
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	8e-36
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	2e-13
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	3e-10
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	1e-35
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	3e-15
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	1e-11
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	5e-35
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	4e-13
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	2e-10
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	3e-33
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	2e-13
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	7e-08
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	6e-33
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	2e-12
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	3e-11
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	1e-32
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	6e-14
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	2e-09
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	1e-32
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	3e-12
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	2e-10
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	2e-32
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	2e-13
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	6e-11
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	2e-32
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	4e-15
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	5e-09
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	3e-32
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	4e-12
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	4e-11
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	3e-32
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	3e-12
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	8e-11
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	3e-32
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	4e-16
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	9e-12
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	4e-32
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	8e-15
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	3e-07
2aiq_A	231	Protein C activator; snake venom serine proteinase	5e-32
2aiq_A	231	Protein C activator; snake venom serine proteinase	2e-13
2aiq_A	231	Protein C activator; snake venom serine proteinase	1e-09
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	1e-31
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	3e-13
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	8e-13
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	1e-31
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	1e-14
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	8e-11
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	1e-31
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	8e-15
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	2e-09
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	2e-31
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	2e-14
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	9e-09
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	3e-31
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	1e-14
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	3e-12
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	3e-31
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	8e-15
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	7e-09
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	4e-31
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	1e-11
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	3e-07
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	4e-31
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	2e-11
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	1e-08
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	6e-31
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	1e-13
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	1e-09
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	7e-31
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	8e-13
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	2e-09
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	8e-31
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	2e-14
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	5e-11
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	9e-31
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	2e-11
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	2e-07
1aut_C	250	Activated protein C; serine proteinase, plasma cal	1e-30
1aut_C	250	Activated protein C; serine proteinase, plasma cal	5e-13
1aut_C	250	Activated protein C; serine proteinase, plasma cal	7e-11
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	1e-30
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	1e-13
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	3e-11
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	1e-30
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	1e-14
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	1e-09
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	2e-30
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	5e-11
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	3e-07
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	2e-30
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	5e-14
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	3e-10
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	3e-30
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	1e-12
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	9e-11
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	4e-30
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	7e-12
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	6e-11
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	4e-30
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	5e-15
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	1e-07
1a7s_A	225	Heparin binding protein; serine protease homolog,	4e-30
1a7s_A	225	Heparin binding protein; serine protease homolog,	7e-15
1a7s_A	225	Heparin binding protein; serine protease homolog,	2e-08
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	5e-30
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	6e-15
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	1e-09
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	6e-30
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	3e-13
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	1e-09
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	8e-30
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	2e-14
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	2e-10
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	9e-30
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	8e-14
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	2e-07
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	1e-29
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	1e-13
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	5e-08
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	2e-29
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	4e-15
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	5e-08
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	2e-29
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	9e-14
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	3e-08
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	2e-29
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	7e-15
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	3e-09
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-29
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	5e-11
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	3e-07
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	4e-29
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	9e-11
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	7e-10
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	4e-29
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	2e-13
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	2e-08
1md8_A	329	C1R complement serine protease; innate immunity, a	5e-29
1md8_A	329	C1R complement serine protease; innate immunity, a	4e-15
1md8_A	329	C1R complement serine protease; innate immunity, a	3e-07
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	6e-29
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	6e-15
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	8e-11
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	6e-29
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	4e-12
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	1e-10
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	7e-29
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	3e-11
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	7e-11
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	7e-29
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	9e-11
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	3e-10
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	9e-29
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	7e-15
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	4e-09
1gpz_A	399	Complement C1R component; hydrolase, activation, i	9e-29
1gpz_A	399	Complement C1R component; hydrolase, activation, i	6e-15
1gpz_A	399	Complement C1R component; hydrolase, activation, i	2e-07
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	9e-29
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	1e-13
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	1e-09
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	1e-28
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	7e-11
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	4e-07
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	1e-28
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	2e-12
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	1e-09
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	1e-28
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	3e-15
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	3e-10
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	2e-28
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	8e-12
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	9e-11
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	2e-28
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	3e-13
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	1e-10
1elv_A	333	Complement C1S component; trypsin-like serin prote	2e-28
1elv_A	333	Complement C1S component; trypsin-like serin prote	1e-13
1elv_A	333	Complement C1S component; trypsin-like serin prote	5e-08
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	2e-28
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	5e-10
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	1e-09
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	3e-28
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	1e-14
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	3e-09
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	4e-28
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	1e-12
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	3e-10
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	4e-28
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	7e-15
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	2e-09
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	5e-28
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	3e-12
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	1e-10
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	6e-28
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	3e-16
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	6e-10
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	6e-28
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	3e-11
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	8e-07
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	1e-27
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	2e-13
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	4e-10
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	1e-27
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	2e-12
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	1e-10
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	1e-27
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	5e-15
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	9e-09
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	1e-27
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	3e-14
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	1e-10
2xrc_A	565	Human complement factor I; immune system, hydrolas	3e-27
2xrc_A	565	Human complement factor I; immune system, hydrolas	2e-13
2xrc_A	565	Human complement factor I; immune system, hydrolas	3e-09
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	3e-27
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	2e-14
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	4e-10
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	5e-27
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	1e-15
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	4e-09
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	9e-27
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	9e-14
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	1e-10
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	9e-27
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	2e-13
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	8e-09
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	1e-26
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	9e-14
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-10
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	1e-26
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	2e-15
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	9e-10
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	1e-26
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	4e-12
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	7e-10
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	2e-26
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	4e-15
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	6e-10
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	3e-26
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	1e-11
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	4e-10
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	4e-26
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	3e-13
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	9e-11
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	2e-25
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	9e-13
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	2e-08
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	4e-25
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	4e-15
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	7e-10
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	6e-24
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	2e-09
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	2e-08
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	4e-22
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	1e-12
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	7e-22
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	1e-08
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	4e-21
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	5e-13
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	1e-09
3hrz_D	741	Complement factor B; serine protease, glycosilated	4e-18
3hrz_D	741	Complement factor B; serine protease, glycosilated	4e-11
3hrz_D	741	Complement factor B; serine protease, glycosilated	3e-09
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	4e-18
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	9e-15
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	7e-09
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	6e-15
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	4e-12
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	1e-04

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  154 bits (391), Expect = 4e-43
 Identities = 55/265 (20%), Positives = 94/265 (35%), Gaps = 78/265 (29%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETS-HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
             + +  + +  G+ D     E   +  R +R+V+ HS+F+P  + ND+ALL LDRP+  
Sbjct: 184 YQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQ 243

Query: 214 TGTIQPVCLPQKGESFIGKRGHVVGWGVTSF-PMGEPSPTLQKLEVKVLSNARCSTVIEE 272
              I  +CLPQ+ + F        GWG   F      S  L+K+++  +   +C   +  
Sbjct: 244 ADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRN 303

Query: 273 S-------IGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGE 325
           +       +    +CA  ++ + TC                   G               
Sbjct: 304 TRLGLKFVLDQTFVCAGGEQGKDTC------------------TG--------------- 330

Query: 326 ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYG 385
                         DG    G  L           C     P        ++  GIV++G
Sbjct: 331 --------------DG----GSPL----------FCPDPRNP------SRYMQMGIVAWG 356

Query: 386 VTGCAIMPSYPDLYTRVSEYIRWIH 410
           + GC    + P +Y  V+ +  WI 
Sbjct: 357 I-GCG-DENVPGVYANVAHFRNWID 379

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 280 CAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGG--EADIGEFPWQVAI 337
           C  P+   G      SP       L+    G    +     I G   EA+ GEFPW VA+
Sbjct: 92  CGLPE---GGVLPTPSPTPPVVPVLKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAV 148

Query: 338 --------ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
                   + +    CGG+L+    VLT AHC+          D   + AG
Sbjct: 149 LKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCV---NSYQSNLDAIKIRAG 196

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  130 bits (330), Expect = 8e-36
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 148 VCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL 207
             D    R +  ++    LG HD +Q +      R ++R++ H  F+ F    DIALL+L
Sbjct: 44  YIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLEL 103

Query: 208 DRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC 266
           ++P   +  ++P+ LP     F  GK   V GWG T +  G  +  LQK E++V++   C
Sbjct: 104 EKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYG-GTGALILQKGEIRVINQTTC 162

Query: 267 STVIEESIGIGMLCA 281
             ++ + I   M+C 
Sbjct: 163 ENLLPQQITPRMMCV 177

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMF-FCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHV 377
           ++GG +AD GE+PWQV++   G    CG +L++ +++++AAHC +      +     +  
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60

Query: 378 LAGIVS 383
             G+  
Sbjct: 61  FLGLHD 66

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 365 GGPL-TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL + E DG    AG+VS+G  GCA   + P +YTR+  +  WI 
Sbjct: 192 GGPLSSVEADGRIFQAGVVSWG-DGCA-QRNKPGVYTRLPLFRDWIK 236

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  130 bits (328), Expect = 1e-35
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           R+   S+    LG H  + L     V R +  ++ + H++     NDIA++ L+  V  T
Sbjct: 46  RNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYT 105

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STVIEE 272
             IQP+ LP++ + F  G+   + GWG   +  G  +  LQ+ +V +LSN RC   + E 
Sbjct: 106 DYIQPISLPEENQVFPPGRNCSIAGWGTVVYQ-GTTADILQEADVPLLSNERCQQQMPEY 164

Query: 273 SIGIGMLCA 281
           +I   M+CA
Sbjct: 165 NITENMICA 173

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG +A  G +PW V +  D    CG +L++  ++++AAHC+        E   +  + 
Sbjct: 1   IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCV---YGRNLEPSKWTAIL 57

Query: 380 GIVS 383
           G+  
Sbjct: 58  GLHM 61

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  +++    LAG+ S+G   CA +P+ P +Y RVS +  WI 
Sbjct: 188 GGPLMCQENNRWFLAGVTSFGY-ECA-LPNRPGVYARVSRFTEWIQ 231

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  128 bits (324), Expect = 5e-35
 Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 2/128 (1%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           +    + + L +G+HD +  +        V  +  + ++ P  L ND+++++    +   
Sbjct: 46  QGEAPALVSLVVGEHDSSAASTVRQTHD-VDSIFVNENYDPATLENDVSVIKTAVAITFD 104

Query: 215 GTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STVIEES 273
             + P+C P     ++ ++    GWG  +         L+ + + + +NA C +    ++
Sbjct: 105 INVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDT 164

Query: 274 IGIGMLCA 281
           I   M+CA
Sbjct: 165 IYDDMICA 172

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 321 ILGG-EADIGEFPWQVAIALD--GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHV 377
           I+GG EA   EFPWQV++        FCGG+++N+ +V+ AAHC+    P         +
Sbjct: 1   IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAP-----ALVSL 55

Query: 378 LAGI 381
           + G 
Sbjct: 56  VVGE 59

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 365 GGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL+  +  G   L GIVS+G+ GCA    YP +Y+RV  +  WI 
Sbjct: 189 GGPLSVKDGSGIFSLVGIVSWGI-GCA--SGYPGVYSRVGFHAGWIT 232

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  123 bits (312), Expect = 3e-33
 Identities = 31/125 (24%), Positives = 43/125 (34%), Gaps = 4/125 (3%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
               + LG H     NE    R    +    S  +  +   DI L++LD PV  +  I P
Sbjct: 47  KNFRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAP 106

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV---IEESIGI 276
             LP    S  G    ++GWG  S   G        + + +L    C       E     
Sbjct: 107 FSLPSSPPSV-GSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATS 165

Query: 277 GMLCA 281
             LCA
Sbjct: 166 RTLCA 170

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 321 ILGG-EADIGEFPWQVAI--ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHV 377
           I+GG E +I E  + VA+  +     FCGG L+N+ +VLTAAHC          +  + +
Sbjct: 1   IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCD---------RKNFRI 51

Query: 378 LAGIVS 383
             G+ S
Sbjct: 52  KLGMHS 57

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL           GI S+G   CA  P  P  YT+V +++ WI 
Sbjct: 185 GGPLICN----GQFQGIASWGDDPCA-QPHKPAAYTKVFDHLDWIE 225

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  123 bits (310), Expect = 6e-33
 Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 4/129 (3%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
                    ++ G  +L+ + + +     ++ ++ H ++     ++DIAL++L  P+  T
Sbjct: 48  GLPLQDVWRIYSGILELSDITKDT-PFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYT 106

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STVIEE 272
              +P+ LP KG++  I     V GWG +    GE    LQK+ + +++N  C     + 
Sbjct: 107 EFQKPISLPSKGDTSTIYTNCWVTGWGFSK-EKGEIQNILQKVNIPLVTNEECQKRYQDY 165

Query: 273 SIGIGMLCA 281
            I   M+CA
Sbjct: 166 KITQRMVCA 174

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 4/46 (8%)

Query: 321 ILGG-EADIGEFPWQVAI---ALDGMFFCGGALLNEHFVLTAAHCI 362
           I+GG E+  GE+PWQV++          CGG+L+   +VLTAAHC 
Sbjct: 1   IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCF 46

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  + +G   L GI S+G  GCA     P +YT+V+EY+ WI 
Sbjct: 189 GGPLVCKHNGMWRLVGITSWGE-GCA-RREQPGVYTKVAEYMDWIL 232

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  122 bits (309), Expect = 1e-32
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 148 VCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQ 206
           +      ++   ++L++ +G H  T+          + ++  H  ++    L  DIAL++
Sbjct: 45  LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMK 104

Query: 207 LDRPVPLTGTIQPVCLPQKGESFI----GKRGHVVGWGVTS-----FPMGEPSPTLQKLE 257
           L +PV  +  I PVCLP +  +      G +G V GWG                 LQ + 
Sbjct: 105 LKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVN 164

Query: 258 VKVLSNARCSTVIEESIGIGMLCA 281
           + ++    C       I   M CA
Sbjct: 165 LPIVERPVCKDSTRIRITDNMFCA 188

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 321 ILGG-EADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM-TGGPLTFEQDGYH 376
           I+ G +A+IG  PWQV +         CG +L+++ +VLTAAHC++       F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60

Query: 377 VLAG 380
           V  G
Sbjct: 61  VRIG 64

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 365 GGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP   +   +      GIVS+G  GC         YT V    +WI 
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGE-GCD-RDGKYGFYTHVFRLKKWIQ 251

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  122 bits (308), Expect = 1e-32
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
               + LG ++L   +E   +  GV  +  H  ++ F++ NDIAL++L   V L  TIQ 
Sbjct: 64  LTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQV 123

Query: 220 VCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--VIEESIGI 276
            CLP +G          V GWG      G  +  LQ+    V+  A CS       ++  
Sbjct: 124 ACLPSEGSLLPQDYPCFVTGWGRLY-TNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKE 182

Query: 277 GMLCAAPDETQGTC 290
            M+CA  D     C
Sbjct: 183 TMVCAGGDGVISAC 196

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 310 GTTYRQPRR--RIILGGEADIGEFPWQVAI----ALDGMFFCGGALLNEHFVLTAAHCIM 363
           G    QP    R++ G +A    +PWQ+++           CGG L+  + VLTAAHCI 
Sbjct: 2   GAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCIS 61

Query: 364 TGGPLTFEQDGYHVLAGIVS 383
               LT     Y V  G  +
Sbjct: 62  --NTLT-----YRVALGKNN 74

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  + DG   + GIVS+G    C      P ++TRVS YI WI+
Sbjct: 201 GGPLNCQADGQWDVRGIVSFGSGLSCN-TFKKPTVFTRVSAYIDWIN 246

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  121 bits (307), Expect = 2e-32
 Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
               + +GD +  Q          V  V+ H+ F       DIA+L+L  P+     + P
Sbjct: 48  KRFKVRVGDRNTEQEEGG-EAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAP 106

Query: 220 VCLPQKGES----FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
            CLP++  +       K G V G+G T    GE S  L+ LEV  +    C       I 
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHE-KGEQSTRLKMLEVPYVDRNSCKLSSSFIIT 165

Query: 276 IGMLCA 281
             M CA
Sbjct: 166 QNMFCA 171

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 321 ILGG-EADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCI 362
           I+GG E   GE PWQ  +   +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP        + + GIVS+G  GCA       +YT+V+ +++WI 
Sbjct: 186 GGPHVTRFKDTYFVTGIVSWGE-GCA-RKGKYGIYTKVTAFLKWID 229

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  123 bits (310), Expect = 2e-32
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 10/144 (6%)

Query: 148 VCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQ 206
           +      ++   ++L++ +G H  T+          + ++  H  ++    L  DIAL++
Sbjct: 75  LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMK 134

Query: 207 LDRPVPLTGTIQPVCLPQKGESFI----GKRGHVVGWGVT-----SFPMGEPSPTLQKLE 257
           L +PV  +  I PVCLP +  +      G +G V GWG       +         LQ + 
Sbjct: 135 LKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVN 194

Query: 258 VKVLSNARCSTVIEESIGIGMLCA 281
           + ++    C       I   M CA
Sbjct: 195 LPIVERPVCKDSTRIRITDNMFCA 218

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 296 PVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEH 353
           P+   K    +  +         RI+ G +A+IG  PWQV +         CG +L+++ 
Sbjct: 7   PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 66

Query: 354 FVLTAAHCIM-TGGPLTFEQDGYHVLAG 380
           +VLTAAHC++       F ++   V  G
Sbjct: 67  WVLTAAHCLLYPPWDKNFTENDLLVRIG 94

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 365 GGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP   +   +      GIVS+G  GC         YT V    +WI 
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGE-GCD-RDGKYGFYTHVFRLKKWIQ 281

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  121 bits (305), Expect = 3e-32
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
                  L ++ G  + +++ E +    GV+ ++ H  +       DIALL+L+  V  T
Sbjct: 48  GVESPKILRVYSGILNQSEIKEDT-SFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYT 106

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STVIEE 272
            + +P+ LP KGE   I     V GWG       +   TLQK ++ +++N  C       
Sbjct: 107 DSQRPISLPSKGERNVIYTDCWVTGWGYRK-LRDKIQNTLQKAKIPLVTNEECQKRYRGH 165

Query: 273 SIGIGMLCA 281
            I   M+CA
Sbjct: 166 KITHKMICA 174

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 321 ILGG-EADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
           I+GG  +  GE+PWQV +          CGG+++   ++LTAAHC 
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCF 46

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL+ + +    L GI S+G  GCA     P +YT V EY+ WI 
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGE-GCA-QRERPGVYTNVVEYVDWIL 232

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  121 bits (306), Expect = 3e-32
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
             G+ D    +E    +  + +V  +S ++   ++NDI LL+L      + T+  VCLP 
Sbjct: 67  VAGEFDQGSSSEKI-QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPS 125

Query: 225 KGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
             + F  G      GWG+T +        LQ+  + +LSN  C       I   M+CA
Sbjct: 126 ASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICA 183

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 9/64 (14%)

Query: 319 RIILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHV 377
           RI+ G EA  G +PWQV++    G  FCGG+L+NE++V+TAAHC               V
Sbjct: 15  RIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--------GVTTSDVV 66

Query: 378 LAGI 381
           +AG 
Sbjct: 67  VAGE 70

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 60.7 bits (148), Expect = 8e-11
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  +++G   L GIVS+G +      S P +Y RV+  + W+ 
Sbjct: 196 GGPLVCKKNGAWTLVGIVSWG-SSTC-STSTPGVYARVTALVNWVQ 239

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  124 bits (314), Expect = 3e-32
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 17/152 (11%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETS-----------HVRRGVRRVLFHSHFHPFVLSNDI 202
           +         + LG+H ++   +              V  G+ + L H  +    + +DI
Sbjct: 165 VHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDI 224

Query: 203 ALLQLDRPVPLTGTIQPVCLPQKGE----SFIGKRGHVVGWGVTSFPMGEPSPTLQKLEV 258
           ALL+L+R VP    I+P+CLP   E    +       V GWG T    G  S  L +  V
Sbjct: 225 ALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTEN--GSSSDVLLQANV 282

Query: 259 KVLSNARCSTVIEESIGIGMLCAAPDETQGTC 290
            +   + CS     ++ +  LC    + Q +C
Sbjct: 283 PLQPRSACSQAYRRAVPLSQLCVGGGDLQDSC 314

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score = 78.4 bits (193), Expect = 4e-16
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 251 PTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQG 310
            T+++   +     +       S     LC   +  +  C    +    +K       + 
Sbjct: 49  RTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSANIQHNSKVMSLFKDEN 108

Query: 311 TT-YRQPRRRIILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
                   +R+  G E  +   PW   +      +  F CGGA+++E ++LTAAHC+
Sbjct: 109 FDCGNFLSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCV 165

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score = 65.3 bits (159), Expect = 9e-12
 Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 365 GGPL------TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
           GGPL        E     V  GIVS GV  C    S P LYT V EY++WI   
Sbjct: 319 GGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCG-QISLPGLYTNVGEYVQWITDT 371

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  120 bits (304), Expect = 4e-32
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           R T      + LG H L++   +      +++ +  S       SNDI L++L     L 
Sbjct: 47  RFTKGQSPTVVLGAHSLSKNEASKQTLE-IKKFIPFSRVTSDPQSNDIMLVKLQTAAKLN 105

Query: 215 GTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI---- 270
             ++ + +  K     G +  V GWG T      PS TL+++ V VLS   C++      
Sbjct: 106 KHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNG 165

Query: 271 EESIGIGMLCA 281
           +  I   M+CA
Sbjct: 166 DPFITKDMVCA 176

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score = 72.6 bits (179), Expect = 8e-15
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
            II G E      P+  +I   G   CGG L++  +VLTAAHC               V+
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKG----QSPTVV 57

Query: 379 AGIVS 383
            G  S
Sbjct: 58  LGAHS 62

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSE-YIRWIH 410
           GGPL  +     V   IVS G   C +  + P +YT +++ Y  WI 
Sbjct: 191 GGPLICK----GVFHAIVSGG-HECGV-ATKPGIYTLLTKKYQTWIK 231

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  120 bits (303), Expect = 5e-32
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             + ++LG H+L  LN+ +  R    +    +  +  +   DI L++L+RPV  +  I P
Sbjct: 44  GNMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAP 103

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G    ++GWG  + P            + +L  A C     + +    L
Sbjct: 104 LSLPSNPPSV-GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAY-KGLAATTL 161

Query: 280 CA 281
           CA
Sbjct: 162 CA 163

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           ++GG E +I E  +   +       CGG L+N+ +VLTA HC          +    +  
Sbjct: 1   VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCD---------RGNMRIYL 50

Query: 380 GIVS 383
           G+ +
Sbjct: 51  GMHN 54

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    +G     GI+S G   CA  P  P +YT+V +Y  WI 
Sbjct: 178 GGPLI--CNG--QFQGILSVGGNPCAQ-PRKPGIYTKVFDYTDWIQ 218

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  119 bits (301), Expect = 1e-31
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 4/132 (3%)

Query: 151 IDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP 210
           +        S L +  G+ D++    +  +   V +++ H +F   +L NDI+LL+L   
Sbjct: 47  VYGDDYENPSGLQIVAGELDMSVNEGSEQIIT-VSKIILHENFDYNLLDNDISLLKLSGS 105

Query: 211 VPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STV 269
           +     + P+ LP++G +       V GWG TS   G     LQK+ V ++S+  C +  
Sbjct: 106 LTFNDNVAPIALPEQGHTA-TGDVIVTGWGTTSEG-GNTPDVLQKVTVPLVSDEDCRADY 163

Query: 270 IEESIGIGMLCA 281
             + I   M+CA
Sbjct: 164 GADEILDSMICA 175

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 321 ILGG-EADIGEFPWQVAI----ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGY 375
           I+GG +A +GEFP+Q++           FCG ++ NE++ +TA HC+   G       G 
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVY--GDDYENPSGL 58

Query: 376 HVLAGI 381
            ++AG 
Sbjct: 59  QIVAGE 64

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI 414
           GGPL     G   LAGIVS+G  GCA  P YP +YT VS ++ WI  NA+
Sbjct: 190 GGPLAASDTGSTYLAGIVSWGY-GCA-RPGYPGVYTEVSYHVDWIKANAV 237

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  120 bits (303), Expect = 1e-31
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           +      L+  LG+HDL++ +      R V +V+  S + P   ++DIALL+L +PV LT
Sbjct: 45  KIKNWRNLIAVLGEHDLSEHDGD-EQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLT 103

Query: 215 GTIQPVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI 270
             + P+CLP++  S       +   V GWG      G  +  L  L V  L    C    
Sbjct: 104 DHVVPLCLPERTFSERTLAFVRFSLVSGWGQLL-DRGATALELMVLNVPRLMTQDCLQQS 162

Query: 271 EESIGIG-----MLCA 281
            +          M CA
Sbjct: 163 RKVGDSPNITEYMFCA 178

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+GG     GE PWQV + ++G   CGG L+N  +V++AAHC 
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCF 43

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP      G   L GIVS+G  GCA    +  +YTRVS+YI W+ 
Sbjct: 193 GGPHATHYRGTWYLTGIVSWGQ-GCA-TVGHFGVYTRVSQYIEWLQ 236

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  119 bits (300), Expect = 1e-31
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           +   + LG H    LNE    R    + +  +  +  VL  DI L++LD  V  +  I P
Sbjct: 45  TNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVP 104

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV-IEESIGIGM 278
           + LP    S  G   H++GWG  +              + +L +A C     E       
Sbjct: 105 LSLPSSPPSV-GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRT 163

Query: 279 LCA 281
           LCA
Sbjct: 164 LCA 166

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score = 72.6 bits (179), Expect = 8e-15
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           ++GG E +I E    VA      FFC G L+NE +VLTAAHC             + +  
Sbjct: 1   VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCD---------NTNFQMKL 51

Query: 380 GIVS 383
           G+ S
Sbjct: 52  GVHS 55

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    +G     GIVS+G   C      P +YT+V +Y  WI 
Sbjct: 181 GGPLI--CNG--QFQGIVSFGAHPCGQ-GLKPGVYTKVFDYNHWIQ 221

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  123 bits (309), Expect = 2e-31
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 148 VCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQ 206
           +      ++   ++L++ +G H  T+          + ++  H  ++    L  DIAL++
Sbjct: 210 LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMK 269

Query: 207 LDRPVPLTGTIQPVCLPQKGESFI----GKRGHVVGWGVTS-----FPMGEPSPTLQKLE 257
           L +PV  +  I PVCLP +  +      G +G V GWG                 LQ + 
Sbjct: 270 LKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVN 329

Query: 258 VKVLSNARCSTVIEESIGIGMLCA 281
           + ++    C       I   M CA
Sbjct: 330 LPIVERPVCKDSTRIRITDNMFCA 353

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 296 PVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEH 353
           P+   K    +  +         RI+ G +A+IG  PWQV +         CG +L+++ 
Sbjct: 142 PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 201

Query: 354 FVLTAAHCIM-TGGPLTFEQDGYHVLAG 380
           +VLTAAHC++       F ++   V  G
Sbjct: 202 WVLTAAHCLLYPPWDKNFTENDLLVRIG 229

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 56.0 bits (135), Expect = 9e-09
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 365 GGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP   +   +      GIVS+G  GC         YT V    +WI 
Sbjct: 371 GGPFVMKSPFNNRWYQMGIVSWGE-GCD-RDGKYGFYTHVFRLKKWIQ 416

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  119 bits (301), Expect = 3e-31
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 18/158 (11%)

Query: 149 CDIDQLRDTPVSELVLHLGDHDLTQLNETS----------HVRRGVRRVLFHSHFHPFVL 198
           C   ++     +   + LG+ +     +             +  G+   + H  +     
Sbjct: 69  CVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSK 128

Query: 199 S--NDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQK 255
              +DIAL++L+R V  T  I+PVCLPQ  E   +G+R  VVGWG T    G+ S   QK
Sbjct: 129 DRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTET--GQYSTIKQK 186

Query: 256 LEVKVLSNARCSTV---IEESIGIGMLCAAPDETQGTC 290
           L V V+   +C+         +    LCA  ++ + +C
Sbjct: 187 LAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSC 224

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 314 RQPRRRIILGGEADIGEFPWQVAIALDG-----MFFCGGALLNEHFVLTAAHCIMTGGPL 368
           +    +I+ G +    EFPW   I          F CGG+L+N  +++TAAHC+  G  L
Sbjct: 17  QVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCV-AGRVL 75

Query: 369 TFEQDGYHVLAG 380
                   V  G
Sbjct: 76  RVVGALNKVRLG 87

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 365 GGPLTFEQ-DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
           GGPL  E+ +    L G+VS+G   C     +P +YT+V +Y  WI  N
Sbjct: 229 GGPLLAERANQQFFLEGLVSFGA-TCG-TEGWPGIYTKVGKYRDWIEGN 275

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  118 bits (297), Expect = 3e-31
 Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 157 TPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGT 216
           + ++ L +H+G + L++    S     V   + + ++  F+L ND+AL+ L  P+     
Sbjct: 47  SNLNRLKVHVGTNYLSE----SGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDL 102

Query: 217 IQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGI 276
           +QP+ L    E        + GWG T    G     LQ++E+ V    +C    +  +  
Sbjct: 103 VQPIKLSTNDEDLESNPCTLTGWGSTRLG-GNTPNALQEIELIVHPQKQCER-DQWRVID 160

Query: 277 GMLCAAPDETQGTC 290
             +C      +G C
Sbjct: 161 SHICTLTKRGEGAC 174

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score = 72.2 bits (178), Expect = 8e-15
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG +A +G++P+QV++ L G   CG ++L+ + VLTAAHC+     L    +   V  
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNL----NRLKVHV 56

Query: 380 GIVSYGVTG 388
           G      +G
Sbjct: 57  GTNYLSESG 65

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL           GIVS+G   CA+    PD+YTRVS ++ WI+
Sbjct: 179 GGPLVAN----GAQIGIVSFGS-PCAL--GEPDVYTRVSSFVSWIN 217

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  117 bits (296), Expect = 4e-31
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG H++ +  E +      RR + H  ++   + NDI LLQL R V     + P
Sbjct: 48  SNINVTLGAHNIQR-RENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNP 106

Query: 220 VCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           V LP+  E    G    V GWG  S  M   + TL++++++V  + +C  +         
Sbjct: 107 VALPRAQEGLRPGTLCTVAGWGRVS--MRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQ 164

Query: 279 LCA-APDETQGTC 290
           +C     E +   
Sbjct: 165 ICVGDRRERKAAF 177

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 13/64 (20%)

Query: 321 ILGG-EADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+GG E+     P+   + +    G   CGG L+ E FVLTAAHC              +
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW---------GSNIN 51

Query: 377 VLAG 380
           V  G
Sbjct: 52  VTLG 55

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL       +V  GIVSYG          P+++TRVS ++ WI 
Sbjct: 182 GGPLLCN----NVAHGIVSYG-KSSG---VPPEVFTRVSSFLPWIR 219

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  119 bits (300), Expect = 4e-31
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETS----HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP 210
               V++  L  G  ++              R V +++ H  +     +NDIAL+++  P
Sbjct: 51  IKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPP 110

Query: 211 VPLTGTIQPVCLPQKGESF--IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
           V     I P CLPQ       + +   V GWG         SP LQ+  V ++    C++
Sbjct: 111 VTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNS 170

Query: 269 --VIEESIGIGMLCA 281
                  I    +CA
Sbjct: 171 TRWYNGRIRSTNVCA 185

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 7/49 (14%)

Query: 321 ILGG-EADIGEFPWQVAI------ALDGMFFCGGALLNEHFVLTAAHCI 362
           I+GG +A  G +PW V++             CGG+LLN  ++LTAAHC 
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCF 49

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 365 GGPLT--FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL      +  +V+ GI S+GV GCA     P +YT    Y+ WI 
Sbjct: 200 GGPLMCKDSAENSYVVVGITSWGV-GCA-RAKRPGVYTSTWSYLNWIA 245

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  117 bits (295), Expect = 6e-31
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
               + LG + L+ + E+        + + H  +     SND+ L++L+R +  T  ++P
Sbjct: 46  KVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRP 105

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + +     S  G +  V GWG T  P       LQ L + VLS  RC       I   M 
Sbjct: 106 INVSSHCPS-AGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMF 164

Query: 280 CAAPDETQGTC 290
           CA     + +C
Sbjct: 165 CAGDKAGRDSC 175

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 320 IILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
           II G + D+   PWQ A+       +CG  L++  ++LTAAHC          +  + V 
Sbjct: 1   IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCR---------KKVFRVR 51

Query: 379 AGIVS 383
            G  S
Sbjct: 52  LGHYS 56

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP+    +G   L G+VS+G   CA  P+ P +YT + ++ +WI 
Sbjct: 180 GGPVV--CNG--SLQGLVSWGDYPCA-RPNRPGVYTNLCKFTKWIQ 220

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  117 bits (296), Expect = 7e-31
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 157 TPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGT 216
              S+  + LG H   + +E      GV+    H  + P    ND+AL++L     L   
Sbjct: 61  LSPSDFKIILGKHWRLRSDENE-QHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAF 119

Query: 217 IQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGI 276
           + P+CLP+  +   G    V GWG           TL ++E+ ++ ++ C          
Sbjct: 120 VMPICLPEGPQQE-GAMVIVSGWGKQFL--QRFPETLMEIEIPIVDHSTCQKAYAPLKKK 176

Query: 277 ---GMLCA 281
               M+CA
Sbjct: 177 VTRDMICA 184

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 321 ILGG-EADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCI 362
           I  G  A  G  PW   +  L+G  FCGG+LL   +++TAAHC+
Sbjct: 1   IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCL 44

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 365 GGPL--TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP+     + G   L G VS+G   C        +Y+ +     WI 
Sbjct: 199 GGPMVTLNRERGQWYLVGTVSWG-DDCG-KKDRYGVYSYIHHNKDWIQ 244

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  117 bits (295), Expect = 8e-31
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 7/127 (5%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTI 217
            ++ +  G+H++ +   T   +R V R++ H +F+  +   ++DIALL+LD P+ L   +
Sbjct: 47  VKITVVAGEHNIEETEHTE-QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYV 105

Query: 218 QPVCLPQKGES---FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
            P+C+  K  +        G+V GWG      G  +  LQ L V ++  A C    + +I
Sbjct: 106 TPICIADKEYTNIFLKFGSGYVSGWGRVFH-KGRSALVLQYLRVPLVDRATCLRSTKFTI 164

Query: 275 GIGMLCA 281
              M CA
Sbjct: 165 TNNMFCA 171

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           ++GG +A  G+FPWQV +      FCGG+++NE +++TAAHC+
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCV 43

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP   E +G   L GI+S+G   CA M     +YT+VS Y+ WI 
Sbjct: 186 GGPHVTEVEGTSFLTGIISWG-EECA-MKGKYGIYTKVSRYVNWIK 229

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  116 bits (294), Expect = 9e-31
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG H++ +   T      V+R + H  ++P   SNDI LLQL+R    T  +QP
Sbjct: 48  SSINVTLGAHNIKEQEPTQQFIP-VKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQP 106

Query: 220 VCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI-GIG 277
           + LP        G+   V GWG T+ P+G+ S TLQ++++ V  + +C + +        
Sbjct: 107 LRLPSNKAQVKPGQTCSVAGWGQTA-PLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTI 165

Query: 278 MLCA-APDETQGTC 290
            LC   P+  + + 
Sbjct: 166 ELCVGDPEIKKTSF 179

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 13/64 (20%)

Query: 321 ILGG-EADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+GG EA     P+   + +     +  CGG L+ + FVLTAAHC              +
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW---------GSSIN 51

Query: 377 VLAG 380
           V  G
Sbjct: 52  VTLG 55

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL        V  GIVSYG          P   T+VS ++ WI 
Sbjct: 184 GGPLVCN----KVAQGIVSYG-RNNG---MPPRACTKVSSFVHWIK 221

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  117 bits (295), Expect = 1e-30
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 10/131 (7%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
            +L++ LG++DL +  +   +   ++ V  H ++      NDIALL L +P  L+ TI P
Sbjct: 48  KKLLVRLGEYDLRRWEKWE-LDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVP 106

Query: 220 VCLPQKGES-----FIGKRGHVVGWGVTSF----PMGEPSPTLQKLEVKVLSNARCSTVI 270
           +CLP  G +       G+   V GWG  S          +  L  +++ V+ +  CS V+
Sbjct: 107 ICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVM 166

Query: 271 EESIGIGMLCA 281
              +   MLCA
Sbjct: 167 SNMVSENMLCA 177

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 321 ILGG-EADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCI 362
           ++ G     G+ PWQV +        CG  L++  +VLTAAHC+
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCM 44

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP+     G   L G+VS+G  GC  +     +YT+VS Y+ WIH
Sbjct: 192 GGPMVASFHGTWFLVGLVSWG-EGCG-LLHNYGVYTKVSRYLDWIH 235

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  116 bits (294), Expect = 1e-30
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHF-HPFVLSNDIALLQLDRPVPL 213
           +    S L + +G       + T   +     V  H  + H     NDIAL++L+  V +
Sbjct: 44  QKHDASALDIRMGTLKRLSPHYT---QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVI 100

Query: 214 TGTIQPVCLPQKGESFI---GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC---- 266
              I P+CLP+K           G   GWG+T    G  +  L  +++ ++ + +C    
Sbjct: 101 NSNITPICLPRKEAESFMRTDDIGTASGWGLTQR--GFLARNLMYVDIPIVDHQKCTAAY 158

Query: 267 --STVIEESIGIGMLCA 281
                   S+   MLCA
Sbjct: 159 EKPPYPRGSVTANMLCA 175

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I GG +A  G+FPWQV   + G     GALL +++VLTAAH +        +     +  
Sbjct: 1   IYGGQKAKPGDFPWQVL--ILGGTTAAGALLYDNWVLTAAHAV---YEQKHDASALDIRM 55

Query: 380 GIVS 383
           G + 
Sbjct: 56  GTLK 59

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 365 GGPLT--FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GG L     +     + GIVS+G   C        +YT+V  YI WI 
Sbjct: 190 GGALVFLDSETERWFVGGIVSWGSMNCG-EAGQYGVYTKVINYIPWIE 236

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  116 bits (293), Expect = 1e-30
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
           L D    ++ + LG H L+Q   +  +   V R + H    P  + +D+ LLQL     L
Sbjct: 43  LEDAADGKVQVLLGAHSLSQPEPSKRLYD-VLRAVPHPDSQPDTIDHDLLLLQLSEKATL 101

Query: 214 TGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
              ++P+   +       G    V GWG+ +   G    +LQ + + VL  A C+     
Sbjct: 102 GPAVRPLPWQRVDRDVAPGTLCDVAGWGIVN-HAGRRPDSLQHVLLPVLDRATCNRRTHH 160

Query: 273 SIGI--GMLCA 281
              I   ++CA
Sbjct: 161 DGAITERLMCA 171

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           ILGG EA+    P+  ++ L+G   CGG L+ E +VL+AAHC+              VL 
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAAD-----GKVQVLL 55

Query: 380 G 380
           G
Sbjct: 56  G 56

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL        VL G+V+ G   C      P +YTRV+ Y  WI 
Sbjct: 184 GGPLVCG----GVLEGVVTSGSRVCG-NRKKPGIYTRVASYAAWID 224

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  116 bits (292), Expect = 2e-30
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
            LG H++ +   T  V   VRR + H  ++   L+NDI LL+L R   +T  + P+ LP+
Sbjct: 53  TLGAHNIMERERTQQVIP-VRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPR 111

Query: 225 KGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA-A 282
                  G    V GWG         +  LQ+++++V S  +C    +  I    +CA  
Sbjct: 112 SLAEVKPGMMCSVAGWGRLG-VNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGD 170

Query: 283 PDETQGTC 290
           P + + + 
Sbjct: 171 PSKRKNSF 178

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 321 ILGG-EADIGEFPWQVAI---ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+GG EA     P+   +          CGG L+ E FVLTAAHC+             +
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL---------GSSIN 51

Query: 377 VLAG 380
           V  G
Sbjct: 52  VTLG 55

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 8/46 (17%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    +G  V  GIVSYG        + PD+YTR+S ++ WIH
Sbjct: 183 GGPLV--CNG--VAQGIVSYG-RND---GTTPDVYTRISSFLSWIH 220

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  117 bits (294), Expect = 2e-30
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 11/137 (8%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
            +       + LG H L   +E + V   ++ ++ H  +       DIALLQL RP+  +
Sbjct: 45  SEHHKEAYEVKLGAHQLDSYSEDAKVST-LKDIIPHPSYLQEGSQGDIALLQLSRPITFS 103

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSP-TLQKLEVKVLSNARC------ 266
             I+P+ LP    SF  G    V GWG  +  +   +P  LQ+LEV ++S   C      
Sbjct: 104 RYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNI 163

Query: 267 --STVIEESIGIGMLCA 281
                    +   M+CA
Sbjct: 164 DAKPEEPHFVQEDMVCA 180

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I GG  A  G++PWQV+I  +G+  CGG+L++E +VL+AAHC     P    ++ Y V  
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF----PSEHHKEAYEVKL 56

Query: 380 GIVS 383
           G   
Sbjct: 57  GAHQ 60

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL+   +G   L GIVS+G   C    + P +YT  S Y  WI 
Sbjct: 195 GGPLSCPVEGLWYLTGIVSWGD-ACG-ARNRPGVYTLASSYASWIQ 238

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  122 bits (307), Expect = 3e-30
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
                  L ++ G  + +++ E +     V+ ++ H  +       DIALL+L+  V  T
Sbjct: 435 GVESPKILRVYSGILNQSEIKEDTSFFG-VQEIIIHDQYKMAESGYDIALLKLETTVNYT 493

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STVIEE 272
            + +P+CLP KG+   I     V GWG       +   TLQK ++ +++N  C       
Sbjct: 494 DSQRPICLPSKGDRNVIYTDCWVTGWGYRK-LRDKIQNTLQKAKIPLVTNEECQKRYRGH 552

Query: 273 SIGIGMLCA 281
            I   M+CA
Sbjct: 553 KITHKMICA 561

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 19/115 (16%)

Query: 284 DETQGTCFVPVSPVGYTKK--HLQQFHQGTTYR----------QPRRRIILGGEADIGEF 331
           +E +G C++ +S  G   K  H +    G T R          + + RI+ G  +  GE+
Sbjct: 340 NEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEW 399

Query: 332 PWQVAIALDG---MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVS 383
           PWQV +          CGG+++   ++LTAAHC               V +GI++
Sbjct: 400 PWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYG----VESPKILRVYSGILN 450

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL+ + +    L GI S+G  GCA     P +YT V EY+ WI 
Sbjct: 576 GGPLSCKHNEVWHLVGITSWGE-GCA-QRERPGVYTNVVEYVDWIL 619

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  115 bits (291), Expect = 4e-30
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLD----RP 210
              P   L + LG        E    +  V + + H  F      NDIALLQL     R 
Sbjct: 51  ERFPPHHLTVILGRTYRVVPGEEE-QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRC 109

Query: 211 VPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST- 268
              +  ++ VCLP             + G+G         S  L++  V++  ++RC++ 
Sbjct: 110 AQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQ 169

Query: 269 -VIEESIGIGMLCA 281
            ++  ++   MLCA
Sbjct: 170 HLLNRTVTDNMLCA 183

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 7/49 (14%)

Query: 321 ILGG-EADIGEFPWQVAIALDGM------FFCGGALLNEHFVLTAAHCI 362
           I GG  ADI   PWQ AI           F CGG L++  ++L+AAHC 
Sbjct: 1   IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCF 49

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    DG   L GI+S+G+ GC      P +YT+V+ Y+ WI 
Sbjct: 204 GGPLVCLNDGRMTLVGIISWGL-GCG-QKDVPGVYTKVTNYLDWIR 247

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  115 bits (290), Expect = 4e-30
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 14/136 (10%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH---PFVLSNDIALLQLDRPV 211
                + L + LG  ++            +RRV  H  +     +    DIALL+L+  V
Sbjct: 47  EAQSNASLDVFLGHTNVE--ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSV 104

Query: 212 PLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI 270
            L   + P+CLP     + +G  G+V G+GV      + +  L+ + + V +   C   +
Sbjct: 105 TLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME---EKIAHDLRFVRLPVANPQACENWL 161

Query: 271 EESIGIG-----MLCA 281
                +      M CA
Sbjct: 162 RGKNRMDVFSQNMFCA 177

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score = 73.1 bits (180), Expect = 5e-15
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG +A +G FPWQV   + G    GGALL + ++LTAAH +              V  
Sbjct: 1   IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58

Query: 380 GIVS 383
           G  +
Sbjct: 59  GHTN 62

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 365 GGPLT--FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GG            V  GIVS+G+ GC+        YT+V  Y+ WI 
Sbjct: 192 GGVFAVRDPNTDRWVATGIVSWGI-GCS---RGYGFYTKVLNYVDWIK 235

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  114 bits (289), Expect = 4e-30
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
            +        + LG +DL +    S         +  + + P    ND+ LLQLDR   L
Sbjct: 43  FQSQNPGVSTVVLGAYDLRRRERQSRQTF-SISSMSENGYDPQQNLNDLMLLQLDREANL 101

Query: 214 TGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
           T ++  + LP +  +   G R  V GWG      G  S   + + V V    +C      
Sbjct: 102 TSSVTILPLPLQNATVEAGTRCQVAGWGSQR-SGGRLSRFPRFVNVTVTPEDQCRP---- 156

Query: 273 SIGIGMLCA-APDETQGTC 290
                 +C        G C
Sbjct: 157 ----NNVCTGVLTRRGGIC 171

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score = 72.6 bits (179), Expect = 7e-15
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG +A   +FP+  +I   G  FCGGAL++  FV+TAA C  +  P         V+ 
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGV-----STVVL 55

Query: 380 G 380
           G
Sbjct: 56  G 56

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           G PL    +G  +  G+ S+ +  C      PD +TRV+ +  WI 
Sbjct: 176 GTPLV--CEG--LAHGVASFSLGPCG---RGPDFFTRVALFRDWID 214

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  114 bits (289), Expect = 5e-30
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQ 218
           ++E  +HLG   L    +    R    +   H  +      ND+ L++L+    L+  ++
Sbjct: 44  MNEYTVHLGSDTL---GDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVK 100

Query: 219 PVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
            V LP + E   G    V GWG T+ P       L  ++VK++S   C+ V ++ +   M
Sbjct: 101 KVRLPSRCEP-PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSM 159

Query: 279 LCA 281
           LCA
Sbjct: 160 LCA 162

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score = 72.6 bits (179), Expect = 6e-15
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G     G  PWQVA+       CGG L+NE +VLTAAHC           + Y V  
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCK---------MNEYTVHL 51

Query: 380 GIVS 383
           G  +
Sbjct: 52  GSDT 55

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL     G   L G+VS+G   C   P+ P +YT+V ++ +WI+
Sbjct: 177 GGPLV--CRG--TLQGLVSWGTFPCG-QPNDPGVYTQVCKFTKWIN 217

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  114 bits (289), Expect = 6e-30
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 4/123 (3%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             + + LG H     NE   +R    +    +   P  L  DI L++L RPV  +  I P
Sbjct: 47  RNIRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAP 106

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV-IEESIGIGM 278
           V LP +     G R  ++GWG  S              + ++ +  C  +          
Sbjct: 107 VSLPSRSRGV-GSRCRIMGWGKIS--TTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRT 163

Query: 279 LCA 281
           LCA
Sbjct: 164 LCA 166

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 12/64 (18%)

Query: 321 ILGG-EADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHV 377
           ++GG E +I E P+ VA+         C GAL+N  +VLTAAHC          +    +
Sbjct: 1   VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCD---------RRNIRI 51

Query: 378 LAGI 381
             G+
Sbjct: 52  KLGM 55

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL         + GIV+ G   C      P +YT+V +Y  WI 
Sbjct: 181 GGPLICN----GEMHGIVAGGSEPCG-QHLKPAVYTKVFDYNNWIQ 221

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  114 bits (288), Expect = 8e-30
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
                +      G        + S ++RG+RR++ H  +       DI+L +L  PVP T
Sbjct: 45  TYKNPARWTASFGVTI-----KPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYT 99

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEES 273
             +  VCLP     F  G    V G+G      G     L++ +V ++    C+     +
Sbjct: 100 NAVHRVCLPDASYEFQPGDVMFVTGFGALKND-GYSQNHLRQAQVTLIDATTCNEPQAYN 158

Query: 274 IGI--GMLCA 281
             I   MLCA
Sbjct: 159 DAITPRMLCA 168

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+GG E + GE+PWQ ++  DG   CG  L+N  ++++AAHC 
Sbjct: 1   IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCF 43

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 365 GGPL-TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL + +      LAGIVS+G   CA  P+ P +YTRV+    WI 
Sbjct: 183 GGPLVSSDARDIWYLAGIVSWGD-ECA-KPNKPGVYTRVTALRDWIT 227

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  114 bits (288), Expect = 9e-30
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
            LG H +T+   T  +   V++   +  + P     D+ LLQL     +   +  + LP+
Sbjct: 51  ILGAHSITREEPTKQIML-VKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPK 109

Query: 225 KGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEES----IGIGML 279
           KG+    G    V GWG T       S TL+++E+ ++    C+     +    IG+ M+
Sbjct: 110 KGDDVKPGTMCQVAGWGRTH-NSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMV 168

Query: 280 CA-APDETQGTC 290
           CA +    + +C
Sbjct: 169 CAGSLRGGRDSC 180

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score = 69.5 bits (171), Expect = 8e-14
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG E      P+ V ++LD    C GAL+ + +VLTAAHC               V+ 
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC--------NLNKRSQVIL 52

Query: 380 G 380
           G
Sbjct: 53  G 53

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVT-GCAIMPSYPDLYTRVSE-YIRWIH 410
           G PL  E     V  G+ S+G+   C   P  P +Y  +S+ ++ WI 
Sbjct: 185 GSPLLCE----GVFRGVTSFGLENKCG-DPRGPGVYILLSKKHLNWII 227

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  114 bits (287), Expect = 1e-29
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
               + +GD +  Q          V  V+ H+ F       DIA+L+L  P+     + P
Sbjct: 48  KRFKVRVGDRNTEQEEGGE-AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAP 106

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
             LP    +  G +  + GWG T+    +    LQ L+  VLS A+C       I   M 
Sbjct: 107 ASLPTAPPA-TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMF 165

Query: 280 CA 281
           C 
Sbjct: 166 CV 167

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score = 69.1 bits (170), Expect = 1e-13
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 321 ILGG-EADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCI 362
           I+GG     GE PWQ  +   +   FCGG +L+E ++LTAAHC+
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCL 44

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP+         L G+VS+G  GCA   + P +YT+V  Y++WI 
Sbjct: 182 GGPVVCN----GQLQGVVSWG-DGCA-QKNKPGVYTKVYNYVKWIK 221

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  113 bits (285), Expect = 2e-29
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 9/134 (6%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             + + LG H++ + +E + V         H +++ FV+SNDIA+++L  PV LT  I  
Sbjct: 47  GFVDVVLGAHNIRE-DEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIAT 105

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV---IEESIGI 276
           V LP      +G      GWG+ S      S  L++++V ++SNA C  V   + +    
Sbjct: 106 VGLPSTD-VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDG--- 161

Query: 277 GMLCAAPDETQGTC 290
             +C      +GTC
Sbjct: 162 -NICIDSTGGKGTC 174

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score = 73.3 bits (181), Expect = 4e-15
 Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+GG EA    +P Q A+ +D M+FCGG+L++  ++LTAAHC+
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCM 43

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 365 GGPLTFEQDGYHVLAGIVSYG-VTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    +G  +  GI S+G   GC     YPD +TRV+ ++ WI 
Sbjct: 179 GGPLN--YNG--LTYGITSFGAAAGCE--AGYPDAFTRVTYFLDWIQ 219

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  113 bits (285), Expect = 2e-29
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+ ++  +           + + H  ++   L+NDI L++L     L   +  
Sbjct: 44  SGIQVRLGEDNINVVEGNE-QFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + LP    S  G +  + GWG T          L+ L+  +LS++ C +     I   M 
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161

Query: 280 CA 281
           CA
Sbjct: 162 CA 163

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score = 69.1 bits (170), Expect = 9e-14
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 11/61 (18%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG        P+QV++   G  FCGG+L+N  +V++AAHC          + G  V  
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY---------KSGIQVRL 50

Query: 380 G 380
           G
Sbjct: 51  G 51

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 6/46 (13%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP+     G   L GIVS+G +GCA   + P +YT+V  Y+ WI 
Sbjct: 178 GGPVV--CSGK--LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWIK 217

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  113 bits (285), Expect = 2e-29
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           +   + LG H L    E           + H  ++  +L+ND+ L++LD  V  + TI+ 
Sbjct: 45  NSYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRS 104

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + +  +  +  G    V GWG+ +   G     LQ + V V+S   CS + +      M 
Sbjct: 105 ISIASQCPT-AGNSCLVSGWGLLA--NGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMF 161

Query: 280 CA 281
           CA
Sbjct: 162 CA 163

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score = 72.6 bits (179), Expect = 7e-15
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           II G +      PWQ A+ ++   FC G L++  +VL+AAHC  
Sbjct: 1   IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQ 44

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    +G   L G+VS+G   C      P +YT + ++  WI 
Sbjct: 178 GGPLI--CNG--YLQGLVSFGKAPCGQ-VGVPGVYTNLCKFTEWIE 218

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  113 bits (285), Expect = 2e-29
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
            LG H++    ET  +   V + + H  ++P   SNDI LL+L R    T  ++P+ LP+
Sbjct: 54  TLGAHNIKAKEETQQIIP-VAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112

Query: 225 KGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEES-IGIGMLCA- 281
           +      G   +V GWG  + P GE   TL ++++ V  +  C +  + S      +C  
Sbjct: 113 RNAHVKPGDECYVAGWGKVT-PDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVG 171

Query: 282 APDETQGTC 290
                  + 
Sbjct: 172 DSKIKGASF 180

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 14/65 (21%)

Query: 321 ILGG-EADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGY 375
           I+GG E      P+              FCGG L+ + FVLTAAHC              
Sbjct: 1   IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK---------GRSM 51

Query: 376 HVLAG 380
            V  G
Sbjct: 52  TVTLG 56

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  +       AGIVSYG        S P ++TRV  ++ WI 
Sbjct: 185 GGPLVCK----RAAAGIVSYG-QTD---GSAPQVFTRVLSFVSWIK 222

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  112 bits (283), Expect = 4e-29
 Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLS--NDIALLQLDRPVPLTGTI 217
               + LG H L+     S +   V +++ H  ++   LS  NDIALL+L  PV LT  I
Sbjct: 51  RTYRVVLGRHSLSTNEPGS-LAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKI 109

Query: 218 QPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS--TVIEESI 274
           Q  CLP  G         +V GWG      G     LQ+ ++ V+  A CS       ++
Sbjct: 110 QLGCLPAAGTILPNNYVCYVTGWGRLQ-TNGASPDILQQGQLLVVDYATCSKPGWWGSTV 168

Query: 275 GIGMLCAAPDETQGTC 290
              M+CA  D    +C
Sbjct: 169 KTNMICAGGDGIISSC 184

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 5/47 (10%)

Query: 321 ILGGE-ADIGEFPWQVAIALDG----MFFCGGALLNEHFVLTAAHCI 362
           ++GGE A    +PWQV++  D        CGG L+++ +VLTAAHCI
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCI 47

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 365 GGPLT-FEQDGYHVLAGIVSYG-VTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL     +G   + GIVS+G   GC      P ++TRVS YI WI+
Sbjct: 189 GGPLNCQGANGQWQVHGIVSFGSSLGCN-YYHKPSVFTRVSNYIDWIN 235

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  112 bits (282), Expect = 4e-29
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           S + + LG+H++     +        RV+ H ++  + + NDI L++L +P  L   +QP
Sbjct: 44  SRVEVRLGEHNIKVTEGSEQFIS-SSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           V LP       G    V GWG T       S  LQ L + +LS + C+      I   M 
Sbjct: 103 VALPTSCAPA-GTMCTVSGWGNTMSS-TADSNKLQCLNIPILSYSDCNNSYPGMITNAMF 160

Query: 280 CA 281
           CA
Sbjct: 161 CA 162

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 11/64 (17%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG E      P QV++   G  FCGG+L+NE++V++AAHC          +    V  
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY---------KSRVEVRL 50

Query: 380 GIVS 383
           G  +
Sbjct: 51  GEHN 54

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP+    +G   L G+VS+G  GCA  P  P +Y +V  +  W+ 
Sbjct: 177 GGPVV--CNGE--LQGVVSWG-YGCA-EPGNPGVYAKVCIFNDWLT 216

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  114 bits (288), Expect = 5e-29
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 14/136 (10%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH---PFVLSNDIALLQLDRPV 211
                + L + LG  ++            +RRV  H  +     +    DIALL+L+  V
Sbjct: 136 EAQSNASLDVFLGHTNVE--ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSV 193

Query: 212 PLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI 270
            L   + P+CLP     + +G  G+V G+GV      + +  L+ + + V +   C   +
Sbjct: 194 TLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME---EKIAHDLRFVRLPVANPQACENWL 250

Query: 271 EESIGIG-----MLCA 281
                +      M CA
Sbjct: 251 RGKNRMDVFSQNMFCA 266

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score = 75.2 bits (185), Expect = 4e-15
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 309 QGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPL 368
           +     + R+RII G +A +G FPWQV   + G    GGALL + ++LTAAH +      
Sbjct: 79  KPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHE 136

Query: 369 TFEQDGYHVLAGIVS 383
                   V  G  +
Sbjct: 137 AQSNASLDVFLGHTN 151

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 365 GGPLTFE--QDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GG            V  GIVS+G+ GC+        YT+V  Y+ WI 
Sbjct: 281 GGVFAVRDPNTDRWVATGIVSWGI-GCS---RGYGFYTKVLNYVDWIK 324

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  116 bits (291), Expect = 6e-29
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHF-HPFVLSNDIALLQLDRPVPL 213
           +    S L + +G       + T   +     V  H  + H     NDIAL++L+  V +
Sbjct: 205 QKHDASALDIRMGTLKRLSPHYT---QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVI 261

Query: 214 TGTIQPVCLPQKGESFI---GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC---- 266
              I P+CLP+K           G   GWG+T    G  +  L  +++ ++ + +C    
Sbjct: 262 NSNITPICLPRKEAESFMRTDDIGTASGWGLTQ--RGFLARNLMYVDIPIVDHQKCTAAY 319

Query: 267 --STVIEESIGIGMLCA 281
                   S+   MLCA
Sbjct: 320 EKPPYPRGSVTANMLCA 336

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score = 74.8 bits (184), Expect = 6e-15
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 310 GTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
           G + R    +I  G +A  G+FPWQV   + G     GALL +++VLTAAH +       
Sbjct: 152 GLSARTTGGQIYGGQKAKPGDFPWQVL--ILGGTTAAGALLYDNWVLTAAHAV---YEQK 206

Query: 370 FEQDGYHVLAGIVS 383
            +     +  G + 
Sbjct: 207 HDASALDIRMGTLK 220

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 365 GGPLTF--EQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GG L F   +     + GIVS+G   C        +YT+V  YI WI 
Sbjct: 351 GGALVFLDSETERWFVGGIVSWGSMNCG-EAGQYGVYTKVINYIPWIE 397

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  112 bits (282), Expect = 6e-29
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPF-VLSNDIALLQL----DR 209
              P   + + LG H   +  + +    G+ + + ++ +  F    +D+ L++L    DR
Sbjct: 44  HSPPRDSVSVVLGQHFFNRTTDVT-QTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDR 102

Query: 210 PVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-- 266
               +  +QP+CLP+ G +F  G +  + GWG     +   S +L++  V ++++ +C  
Sbjct: 103 CATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSS 162

Query: 267 STVIEESIGIGMLCA 281
             V    I   MLCA
Sbjct: 163 PEVYGADISPNMLCA 177

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG  +  G  PW  AI   G  FC G+L++  +V++AAHC       +  +D   V+ 
Sbjct: 1   IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSH----SPPRDSVSVVL 55

Query: 380 GIVSYGVT 387
           G   +  T
Sbjct: 56  GQHFFNRT 63

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  E++G   L GI+S+G  GC      P +YTRV+ Y+ WI+
Sbjct: 192 GGPLACEKNGVAYLYGIISWGD-GCG-RLHKPGVYTRVANYVDWIN 235

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  112 bits (282), Expect = 7e-29
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLS--NDIALLQLDRPVPLTGTI 217
               + +G+H+L Q N T      V++++ H +++   ++   DIALL+L + V L   +
Sbjct: 51  LTFRVVVGEHNLNQNNGTEQYVG-VQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYV 109

Query: 218 QPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS--TVIEESI 274
           Q   LP+ G         ++ GWG+T    G+ + TLQ+  +  +  A CS  +    ++
Sbjct: 110 QLGVLPRAGTILANNSPCYITGWGLTR-TNGQLAQTLQQAYLPTVDYAICSSSSYWGSTV 168

Query: 275 GIGMLCAAPDETQGTC 290
              M+CA  D  +  C
Sbjct: 169 KNSMVCAGGDGVRSGC 184

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYG-VTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    +G + + G+ S+    GC  +   P ++TRVS YI WI+
Sbjct: 189 GGPLHCLVNGQYAVHGVTSFVSRLGCN-VTRKPTVFTRVSAYISWIN 234

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 12/68 (17%)

Query: 321 ILGG-EADIGEFPWQVAI----ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGY 375
           ++GG EA    +P Q+++           CGG L+ +++V+TAAHC+     LT     +
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV--DRELT-----F 53

Query: 376 HVLAGIVS 383
            V+ G  +
Sbjct: 54  RVVVGEHN 61

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  111 bits (281), Expect = 7e-29
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLS--NDIALLQLDRPVPLTGTI 217
               + LG+H+L        +   V  V  HS ++   ++   DIALL+L+    L   +
Sbjct: 51  RTWRVVLGEHNLNTNEGKEQIMT-VNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAV 109

Query: 218 QPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS--TVIEESI 274
           Q   LP   +        ++ GWG TS   G  S +L++  +  + +A CS       ++
Sbjct: 110 QLAALPPSNQILPNNNPCYITGWGKTS-TGGPLSDSLKQAWLPSVDHATCSSSGWWGSTV 168

Query: 275 GIGMLCA 281
              M+CA
Sbjct: 169 KTTMVCA 175

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 12/68 (17%)

Query: 321 ILGGE-ADIGEFPWQVAIALDG----MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGY 375
           ++GG  A    +PWQ+++           CGG+L+ + +V+TAAHC+      T     +
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD--SART-----W 53

Query: 376 HVLAGIVS 383
            V+ G  +
Sbjct: 54  RVVLGEHN 61

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  + +G + + G+ S+   +GC      P ++TRVS YI W++
Sbjct: 188 GGPLNCQVNGSYYVHGVTSFVSSSGCN-ASKKPTVFTRVSAYISWMN 233

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  111 bits (280), Expect = 9e-29
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH---PFVLSNDIALLQLDRPVPLTGT 216
            +  + LGDH L   ++     + V + + H  ++   P   S+DI L++L     L   
Sbjct: 45  QKYSVRLGDHSLQSRDQPEQEIQ-VAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDK 103

Query: 217 IQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGI 276
           ++PV L        G++  + GWG  + P      TL   EVK+ S  +C       I  
Sbjct: 104 VKPVQLANLCPKV-GQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITE 162

Query: 277 GMLCAAPDETQGTC 290
           GM+CA       TC
Sbjct: 163 GMVCAGSSNGADTC 176

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score = 72.6 bits (179), Expect = 7e-15
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           IL G E      PWQ A+       CGG L+ + +VLTAAHC  
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKK 44

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  +     +L GI S+G   C   P  P +YT++  Y  WI 
Sbjct: 181 GGPLVCD----GMLQGITSWGSDPCGK-PEKPGVYTKICRYTTWIK 221

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  115 bits (289), Expect = 9e-29
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 14/136 (10%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH---PFVLSNDIALLQLDRPV 211
                + L + LG  ++            +RRV  H  +     +    DIALL+L+  V
Sbjct: 204 EAQSNASLDVFLGHTNVE--ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSV 261

Query: 212 PLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI 270
            L   + P+CLP     + +G  G+V G+GV      + +  L+ + + V +   C   +
Sbjct: 262 TLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME---EKIAHDLRFVRLPVANPQACENWL 318

Query: 271 EESIGIG-----MLCA 281
                +      M CA
Sbjct: 319 RGKNRMDVFSQNMFCA 334

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score = 74.8 bits (184), Expect = 6e-15
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 309 QGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPL 368
           +     + R++II G +A +G FPWQV   + G    GGALL + ++LTAAH +      
Sbjct: 147 KPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHE 204

Query: 369 TFEQDGYHVLAGIVS 383
                   V  G  +
Sbjct: 205 AQSNASLDVFLGHTN 219

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 365 GGPLTFE--QDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GG            V  GIVS+G+ GC+        YT+V  Y+ WI 
Sbjct: 349 GGVFAVRDPNTDRWVATGIVSWGI-GCS---RGYGFYTKVLNYVDWIK 392

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  111 bits (280), Expect = 9e-29
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
           + D     +V+     +L    E           ++ S +    + NDIA+L+L RP+ L
Sbjct: 45  VFDQKPETIVIQYESTNLW---EDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKL 101

Query: 214 TG-TIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIE 271
            G   +P  LP        G    V G+G            L+  ++ V+    C T   
Sbjct: 102 DGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTM-DPKDHDLKSAQLTVVDLDECRTKYG 160

Query: 272 ES-IGIGMLCA 281
              + + + CA
Sbjct: 161 PIFLSLQVFCA 171

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 323 GG-EADIGEFPWQVAI---ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTF 370
           GG + DI + PW VA+     +    CGGA+L++ FVLTAAHC+    P T 
Sbjct: 2   GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETI 53

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           G P   +      L G+ +Y           P+++T+V  Y+ WI 
Sbjct: 184 GDPTVQQ----DTLVGVAAYFP-KRP--EGAPEVFTKVGSYVSWIQ 222

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  111 bits (279), Expect = 1e-28
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
            E+ + LG HD+ +   T    + V + + H  ++     +DI LL+L++ V LT  +  
Sbjct: 49  REITVILGAHDVRKRESTQQKIK-VEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNV 107

Query: 220 VCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
           V LP   +    G      GWG T       S TL+++E++++    C            
Sbjct: 108 VPLPSPSDFIHPGAMCWAAGWGKTG-VRDPTSYTLREVELRIMDEKACVDY-RYYEYKFQ 165

Query: 279 LCA-APDETQGTC 290
           +C  +P   +   
Sbjct: 166 VCVGSPTTLRAAF 178

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score = 60.6 bits (148), Expect = 7e-11
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 14/65 (21%)

Query: 321 ILGG-EADIGEFPWQVAIALD----GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGY 375
           I+GG E+     P+   + +         CGG L++  FVLTAAHC              
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCK---------GREI 51

Query: 376 HVLAG 380
            V+ G
Sbjct: 52  TVILG 56

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL        V  GIVSYG    A     P ++TRVS Y+ WI+
Sbjct: 183 GGPLLCA----GVAHGIVSYG-HPDA---KPPAIFTRVSTYVPWIN 220

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  111 bits (280), Expect = 1e-28
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLS--NDIALLQLDRPVP 212
                + + +  G    +  + +      V     H ++     S  NDIA+L L   + 
Sbjct: 47  DGVLPNNIRVIAGLWQQS--DTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSIS 104

Query: 213 LTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIE 271
           L G IQ   LP    +   G    + GWG T          LQK  + V++ A+C+  + 
Sbjct: 105 LGGNIQAAVLPANNNNDYAGTTCVISGWGRTD-GTNNLPDILQKSSIPVITTAQCTAAMV 163

Query: 272 ESIGI----GMLCA 281
              G       +C 
Sbjct: 164 GVGGANIWDNHICV 177

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 321 ILGG-EADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           ++GG  A  GEFPWQ++           CG +LL+    L+A+HC+    P         
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNN-----IR 55

Query: 377 VLAGIVS 383
           V+AG+  
Sbjct: 56  VIAGLWQ 62

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVT---GCAIMPSYPDLYTRVSEYIRWIHVNA 413
           GGPL    DG   + G+ S+ V+   G   +P YP +YTRVS Y+ WI  N+
Sbjct: 192 GGPLN-CPDGGTRVVGVTSWVVSSGLGAC-LPDYPSVYTRVSAYLGWIGDNS 241

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  110 bits (278), Expect = 1e-28
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             L + LG H+L Q   +      V R + H  +       DI LL+L RP  L+  IQP
Sbjct: 45  PNLQVFLGKHNLRQRESSQEQSS-VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP 103

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
           + L  +  S      H++GWG T+   G+   T+Q   + ++S   C       I   ML
Sbjct: 104 LPLE-RDCSANTTSCHILGWGKTA--DGDFPDTIQCAYIHLVSREECEHAYPGQITQNML 160

Query: 280 CA 281
           CA
Sbjct: 161 CA 162

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           ++ G   D    P+Q A+   G   CGG L++  +VLTAAHC          +    V  
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCK---------KPNLQVFL 51

Query: 380 GIVS 383
           G  +
Sbjct: 52  GKHN 55

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL         L G+VS+G   C      P +YT V  Y  WI 
Sbjct: 177 GGPLVCG----DHLRGLVSWGNIPCG-SKEKPGVYTNVCRYTNWIQ 217

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  111 bits (279), Expect = 2e-28
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 15/138 (10%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
               ++ L + L +  L            V R++ H  F+      DIALL+L+ PV ++
Sbjct: 49  DVKDLATLRVQLREQHL----YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNIS 104

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSP-TLQKLEVKVLSNARCS----- 267
             +  V LP   E+F  G    V GWG        P P  L++++V ++ N  C      
Sbjct: 105 SRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHL 164

Query: 268 ----TVIEESIGIGMLCA 281
                     I   MLCA
Sbjct: 165 GAYTGDDVRIIRDDMLCA 182

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 321 ILGGE-ADIGEFPWQVAIALDGMF---FCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+GG+ A   ++PWQV++ +   +   FCGG+L++  +VLTAAHC+              
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAT---LR 57

Query: 377 VLAG 380
           V   
Sbjct: 58  VQLR 61

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  + +G  + AG+VS+G  GCA  P+ P +YTRV+ Y+ WIH
Sbjct: 195 GGPLVCKVNGTWLQAGVVSWGE-GCA-QPNRPGIYTRVTYYLDWIH 238

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  112 bits (282), Expect = 2e-28
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQL----DR 209
              P   + + LG H   +  + +    G+ + + ++ +  F    +D+ L++L    DR
Sbjct: 79  HSPPRDSVSVVLGQHFFNRTTDVT-QTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDR 137

Query: 210 PVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-- 266
               +  +QP+CLP+ G +F  G +  + GWG     +   S +L++  V ++++ +C  
Sbjct: 138 CATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSS 197

Query: 267 STVIEESIGIGMLCA 281
             V    I   MLCA
Sbjct: 198 PEVYGADISPNMLCA 212

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 312 TYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFE 371
                R RII G  +  G  PW  AI   G  FC G+L++  +V++AAHC     P    
Sbjct: 28  KRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSPPR--- 83

Query: 372 QDGYHVLAGIVSYGVTG 388
            D   V+ G   +  T 
Sbjct: 84  -DSVSVVLGQHFFNRTT 99

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  E++G   L GI+S+G  GC      P +YTRV+ Y+ WI+
Sbjct: 227 GGPLACEKNGVAYLYGIISWGD-GCG-RLHKPGVYTRVANYVDWIN 270

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  113 bits (284), Expect = 2e-28
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 21/150 (14%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLS-------NDIALLQLDRPVP 212
            E  +++G   +               V  H  +    +        NDIAL++L  PV 
Sbjct: 126 REPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVK 185

Query: 213 LTGTIQPVCLPQKGESFI---GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV 269
           +  T+ P+CLP     +    G  G + GWG T     + +  L+   + V    +C  V
Sbjct: 186 MGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTE--KRDRAVRLKAARLPVAPLRKCKEV 243

Query: 270 IEESIGIG---------MLCAAPDETQGTC 290
             E              M+CA  ++   +C
Sbjct: 244 KVEKPTADAEAYVFTPNMICAGGEKGMDSC 273

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 314 RQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
            + ++RII G +ADI  FPWQV        + GGAL+NE++VLTAAH +
Sbjct: 77  FEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLTAAHVV 122

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 365 GGPLTFE---QDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GG    +          AG+VS+G   C        LYTRV  Y+ WI 
Sbjct: 278 GGAFAVQDPNDKTKFYAAGLVSWGP-QCG----TYGLYTRVKNYVDWIM 321

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  110 bits (278), Expect = 2e-28
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 160 SELVLHLGDHDLTQLNETSH-VRRGVRRVLFHSHFHPFVLS--NDIALLQLDRPVPLTGT 216
               + LG++D + L  +   +      +  H  ++   ++  NDIAL++L R   L   
Sbjct: 49  RTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDK 108

Query: 217 IQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS--TVIEES 273
           +Q   LP  G+        ++ GWG      G     LQ+  +  +    CS       +
Sbjct: 109 VQLANLPPAGDILPNEAPCYISGWGRLY-TGGPLPDKLQQALLPTVDYEHCSQWDWWGIT 167

Query: 274 IGIGMLCA 281
           +   M+CA
Sbjct: 168 VKKTMVCA 175

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 323 GGEADIGEFPWQVAIALDG----MFFCGGALLNEHFVLTAAHCI 362
           G +A    + WQV++  +        CGG+L+   +V+TA HCI
Sbjct: 2   GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCI 45

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 365 GGPLT-FEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL     DG   + G+ S+    GC      P ++TRVS +I WI 
Sbjct: 188 GGPLNCPAADGSWQVHGVTSFVSAFGCN-TIKKPTVFTRVSAFIDWID 234

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  113 bits (285), Expect = 3e-28
 Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 13/136 (9%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV------LSNDIALLQLD 208
           R+  +S   +  G       +    ++ GV+ V++H  + PF        SNDIAL+ L 
Sbjct: 163 RNRVLSRWRVFAGAVAQASPHG---LQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLS 219

Query: 209 RPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC- 266
            P+PLT  IQPVCLP  G++   GK   V GWG T +  G+ +  LQ+  V ++SN  C 
Sbjct: 220 SPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYY-GQQAGVLQEARVPIISNDVCN 278

Query: 267 -STVIEESIGIGMLCA 281
            +      I   M CA
Sbjct: 279 GADFYGNQIKPKMFCA 294

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 314 RQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQD 373
           + P  RI+ G +  +G +PWQV++  DG   CGG+LL+  +VLTAAHC      +     
Sbjct: 112 KLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVL---S 168

Query: 374 GYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
            + V AG V+          S   L   V   +   H
Sbjct: 169 RWRVFAGAVA--------QASPHGLQLGVQAVV--YH 195

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 365 GGPL----TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP     +  +     L GIVS+G  GCA +   P +YT+VS++  WI 
Sbjct: 309 GGPFVCEDSISRTPRWRLCGIVSWGT-GCA-LAQKPGVYTKVSDFREWIF 356

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  109 bits (275), Expect = 4e-28
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
           + +    G  DL     +S V+    +VL    F       D AL++L +P+      QP
Sbjct: 46  TSITATGGVVDL---QSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QP 97

Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV-IEESIGIGM 278
                   ++      V GWG      G     L K  V  +S+A C +      +   M
Sbjct: 98  TLKIATTTAYNQGTFTVAGWGANREG-GSQQRYLLKANVPFVSDAACRSSSSFILVANEM 156

Query: 279 LCA 281
           +CA
Sbjct: 157 ICA 159

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 5/43 (11%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           ++GG  A  GEFP+ V +       CGGAL  +  VLTAAHC+
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCV 39

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 365 GGPL-TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP+   +     V  GIVS+G  GCA       +YT VS +   I 
Sbjct: 174 GGPMFRKDNADEWVQVGIVSWGE-GCA-RKGKYGVYTEVSTFASAIA 218

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  109 bits (275), Expect = 4e-28
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
                S   +  G    T    +  +   +  V  H  +     +ND+A+L+L   +P  
Sbjct: 44  SGYAQSGFQIRAGSLSRT----SGGITSSLSSVRVHPSYSGN--NNDLAILKLSTSIPSG 97

Query: 215 GTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STVIEE 272
           G I    L   G   + G    V GWG TS         L K+ V ++S A C +     
Sbjct: 98  GNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS 157

Query: 273 SIGIGMLCA 281
           +I   M CA
Sbjct: 158 AITNQMFCA 166

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score = 72.6 bits (179), Expect = 7e-15
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG  A  G+FP+ V+I+ +G  +CGG+LLN + VLTAAHC+           G+ + A
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQ-----SGFQIRA 55

Query: 380 GIVSYGVTG 388
           G +S    G
Sbjct: 56  GSLSRTSGG 64

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA 413
           GGP+  +      L G VS+G  GCA  P+Y  +Y  V     +I   A
Sbjct: 181 GGPIV-DSSNT--LIGAVSWG-NGCA-RPNYSGVYASVGALRSFIDTYA 224

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  110 bits (276), Expect = 5e-28
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 10/136 (7%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLS--NDIALLQLDRP-- 210
                 + +++LG   L    +   ++  V  ++ H  +    L+  NDIALL++     
Sbjct: 50  DYPKKEDYIVYLGRSRLNSNTQGE-MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEG 108

Query: 211 --VPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC- 266
                + TIQ + LP        G    + G+G  +         L+   VK++S+  C 
Sbjct: 109 RCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQ 168

Query: 267 -STVIEESIGIGMLCA 281
                   +   MLCA
Sbjct: 169 QPHYYGSEVTTKMLCA 184

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 321 ILGG-EADIGEFPWQVAI-----ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDG 374
           I+GG    I   PW  AI          + CGG+L++  +V++A HC +       +++ 
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFID----YPKKED 56

Query: 375 YHVLAGIVSYGVT 387
           Y V  G       
Sbjct: 57  YIVYLGRSRLNSN 69

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL     G   L GIVS+G  GCA +   P +YTRVS ++ WI 
Sbjct: 199 GGPLVCSLQGRMTLTGIVSWGR-GCA-LKDKPGVYTRVSHFLPWIR 242

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  109 bits (275), Expect = 6e-28
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQLD 208
            +  + LG ++  +   +    R V + + H  F+  +L           SND+ LL+L 
Sbjct: 48  DKYQVWLGKNNFLEDEPSD-QHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLS 106

Query: 209 RPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
           +P  +T  ++P+ LP +     G      GWG T+    +    LQ + +K+L N  C  
Sbjct: 107 KPADITDVVKPITLPTEEPKL-GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDK 165

Query: 269 VIEESIGIGMLCA 281
             E  +   MLCA
Sbjct: 166 AHEMKVTDAMLCA 178

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
             +          PW VA+     + CGG LL+ ++VLTAAHC           D Y V 
Sbjct: 3   PPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCY---------NDKYQVW 53

Query: 379 AGIVS 383
            G  +
Sbjct: 54  LGKNN 58

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  +     +L GI S+G   C   P+ P +YT++ ++  WI 
Sbjct: 193 GGPLICD----GILQGITSWGPEPCGE-PTEPSVYTKLIKFSSWIR 233

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  109 bits (274), Expect = 6e-28
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 5/128 (3%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
            LG H++T+  E +  +  V +   H  ++   L +DI LL+L     LT  +  +  P 
Sbjct: 54  TLGAHNITE-EEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPS 112

Query: 225 KGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA-A 282
           +      G+   V GWG T   +   S TLQ+++++++    CS    +      LC   
Sbjct: 113 QFNFVPPGRMCRVAGWGRTG-VLKPGSDTLQEVKLRLMDPQACSH-FRDFDHNLQLCVGN 170

Query: 283 PDETQGTC 290
           P +T+   
Sbjct: 171 PRKTKSAF 178

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 14/65 (21%)

Query: 321 ILGG-EADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGY 375
           I+GG E      P+   + +        FCGG L+  +FVLTAAHC              
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCA---------GRSI 51

Query: 376 HVLAG 380
            V  G
Sbjct: 52  TVTLG 56

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL        V  GIVSYG    A     P ++TR+S Y  WI+
Sbjct: 183 GGPLLCA----GVAQGIVSYG-RSDA---KPPAVFTRISHYRPWIN 220

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  108 bits (273), Expect = 1e-27
 Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 9/126 (7%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
           ++L L LG H L    ++  +   ++  + H  + P   L ND+ALLQLD  V  + TI+
Sbjct: 48  AQLRLVLGLHTL----DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIR 103

Query: 219 PVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESIG 275
           P+ LP K +    G R  + GWG+T    G  S  L++L+++VL    C  S     S+ 
Sbjct: 104 PLALPSKRQVVAAGTRCSMAGWGLTH-QGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLS 162

Query: 276 IGMLCA 281
             M+C 
Sbjct: 163 PSMVCL 168

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+GG E      P+  ++  +G   CGG L++  +VLTAAHC+
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCL 43

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL        VLAG++S+    C      P + T V+ Y+ WI 
Sbjct: 183 GGPLV--CGKGRVLAGVLSFSSRVCT-DIFKPPVATAVAPYVSWIR 225

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  108 bits (273), Expect = 1e-27
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           +    S   + LG H    L         V R+             DIALL+L  P  +T
Sbjct: 63  KSPRPSSYKVILGAHQEVNLEPHV-QEIEVSRLFLEPTR------KDIALLKLSSPAVIT 115

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS--TVIE 271
             + P CLP             + GWG T       +  L++ ++ V+ N  C+    + 
Sbjct: 116 DKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLLKEAQLPVIENKVCNRYEFLN 173

Query: 272 ESIGIGMLCA 281
             +    LCA
Sbjct: 174 GRVQSTELCA 183

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 319 RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHV 377
           R++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+      +     Y V
Sbjct: 17  RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSS----YKV 72

Query: 378 LAGIVS 383
           + G   
Sbjct: 73  ILGAHQ 78

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL   +   ++L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 198 GGPLVCFEKDKYILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 241

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  108 bits (273), Expect = 1e-27
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-----------LSNDIALLQLD 208
            +  + LG H+L++  +T+   + V        F   +           +S+D+ LL+L 
Sbjct: 45  DDYQIWLGRHNLSKDEDTAQFHQ-VSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLA 103

Query: 209 RPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
           +P  +T  ++ + LP +     G   +  GWG+ S      S TLQ +E+++ SN +C+ 
Sbjct: 104 QPARITDAVKILDLPTQEPKL-GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCAR 162

Query: 269 VIEESIGIGMLCA-APDETQGTC 290
              E +   +LCA   D++   C
Sbjct: 163 AYPEKMTEFVLCATHRDDSGSIC 185

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score = 73.0 bits (180), Expect = 5e-15
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 10/61 (16%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG E +    PWQVA+   G F CGG L++  +VLTAAHC+          D Y +  
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM---------SDDYQIWL 51

Query: 380 G 380
           G
Sbjct: 52  G 52

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GG L    DG  V  GI S+G + CA   +   ++T+V  + +WI 
Sbjct: 190 GGALI--CDG--VFQGITSWGYSECA-DFNDNFVFTKVMPHKKWIK 230

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  113 bits (283), Expect = 3e-27
 Identities = 34/134 (25%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
           LR +      +     D    +    V   V R++FH +++     NDIAL+++ +    
Sbjct: 364 LRASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNK 423

Query: 214 TGT----IQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
                    P C+P     F       V GWG       E   +LQ  EVK++SN  CS 
Sbjct: 424 KDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREK--DNERVFSLQWGEVKLISN--CSK 479

Query: 269 V-IEESIGIGMLCA 281
                     M CA
Sbjct: 480 FYGNRFYEKEMECA 493

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 261 LSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRR-- 318
                C T  +E    G    A +ET+       +     K  L +   G   R   R  
Sbjct: 261 NGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLSCGVKNRMHIRRK 320

Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           RI+ G  A +G+ PWQVAI       CGG  +   ++LTAAHC+
Sbjct: 321 RIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCL 364

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 365 GGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL   + +    + G+VS+G   C   P +P +YT+V+ Y  WI 
Sbjct: 508 GGPLVCMDANNVTYVWGVVSWGE-NCGK-PEFPGVYTKVANYFDWIS 552

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  106 bits (268), Expect = 3e-27
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 14/139 (10%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
           + +  V  + + LG H+L++  E +     V+R+ F + + P  L NDI +LQL+    +
Sbjct: 43  VANVNVRAVRVVLGAHNLSR-REPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATI 100

Query: 214 TGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
              +Q   LP +G     G +   +GWG+        +  LQ+L V V+++  C      
Sbjct: 101 NANVQVAQLPAQGRRLGNGVQCLAMGWGLLG-RNRGIASVLQELNVTVVTSL-CRR---- 154

Query: 273 SIGIGMLCA-APDETQGTC 290
                 +C        G C
Sbjct: 155 ----SNVCTLVRGRQAGVC 169

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG  A    +P+ V++ L G  FCG  L+  +FV++AAHC+              V+ 
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRA-----VRVVL 55

Query: 380 G 380
           G
Sbjct: 56  G 56

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score = 58.3 bits (142), Expect = 4e-10
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           G PL    +G  ++ GI S+   GCA    YPD +  V++++ WI 
Sbjct: 174 GSPLV--CNG--LIHGIASFVRGGCA-SGLYPDAFAPVAQFVNWID 214

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  106 bits (268), Expect = 5e-27
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
           +  T  S++ +H G    T    T       +++ +   +HP  + N+ A+++ + P+ L
Sbjct: 43  VDGTKPSDISIHYGSSYRT----TKGTSVMAKKI-YIVRYHPLTMQNNYAVIETEMPIKL 97

Query: 214 TG-TIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIE 271
              T + + LP             V GWG T+F   E S  L +    V+    C    +
Sbjct: 98  DDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYK 157

Query: 272 ESIGIG-----MLCA 281
           +          + CA
Sbjct: 158 QIEADKYIYDGVFCA 172

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score = 74.9 bits (185), Expect = 1e-15
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG ++DI + PW V + +D   FCGG++L  +FV+TAA C+    P         +  
Sbjct: 1   IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKP-----SDISIHY 55

Query: 380 G 380
           G
Sbjct: 56  G 56

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           G P    Q+G   L G+ SY          +P ++ RV  Y+  I 
Sbjct: 187 GDPAV--QNG--TLVGVASYIS-SMP--SEFPSVFLRVGYYVLDIK 225

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  107 bits (269), Expect = 9e-27
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 11/126 (8%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             + +    +          +   +  V  H  +      ND++LL+L+ P+   G   P
Sbjct: 100 RNITVKTYFNRT----SQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLP 155

Query: 220 VCLPQKGES----FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
           VC P+K  +        RG + GW        +   +L    V ++    C  V+  ++ 
Sbjct: 156 VCTPEKDFAEHLLIPRTRGLLSGWARNG---TDLGNSLTTRPVTLVEGEECGQVLNVTVT 212

Query: 276 IGMLCA 281
               C 
Sbjct: 213 TRTYCE 218

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 70.1 bits (172), Expect = 9e-14
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 317 RRRIILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCI 362
                     D+ + PWQV +   +G  FCGG ++ E+FVLT A C 
Sbjct: 50  GVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCS 96

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           G  +T E  G   L G++           ++  L T+VS Y  W  
Sbjct: 230 GSVVTREHRGSWFLTGVLGSQ--PVG-GQAHMVLVTKVSRYSLWFK 272

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  106 bits (266), Expect = 9e-27
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQLD 208
           +   + LG ++L +    +  R  VR+   H  + P ++           SND+ LL L 
Sbjct: 43  NNYQVLLGRNNLFKDEPFAQRRL-VRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLS 101

Query: 209 RPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
            P  +TG ++ + LP K     G      GWG T+      S  LQ + + +LSN +C  
Sbjct: 102 EPADITGGVKVIDLPTKEPKV-GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIE 160

Query: 269 VIEESIGIGMLCA 281
             ++++   MLCA
Sbjct: 161 TYKDNVTDVMLCA 173

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 12/61 (19%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG + +    PWQVA  +   + CGG L++  +V+TAAHC           + Y VL 
Sbjct: 1   IVGGYKCEKNSQPWQVA--VINEYLCGGVLIDPSWVITAAHCY---------SNNYQVLL 49

Query: 380 G 380
           G
Sbjct: 50  G 50

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    DG  VL GI S G T CA  P  P +Y ++ ++  WI 
Sbjct: 188 GGPLI--CDG--VLQGITSGGATPCAK-PKTPAIYAKLIKFTSWIK 228

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  107 bits (270), Expect = 1e-26
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 11/126 (8%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             + +    +          +   +  V  H  +      ND++LL+L+ P+   G   P
Sbjct: 141 RNITVKTYFNRT----SQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLP 196

Query: 220 VCLPQKGES----FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
           VC P+K  +        RG + GW        +   +L    V ++    C  V+  ++ 
Sbjct: 197 VCTPEKDFAEHLLIPRTRGLLSGWARNG---TDLGNSLTTRPVTLVEGEECGQVLNVTVT 253

Query: 276 IGMLCA 281
               C 
Sbjct: 254 TRTYCE 259

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 70.5 bits (173), Expect = 9e-14
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 295 SPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEH 353
              GY      +                    D+ + PWQV +   +G  FCGG ++ E+
Sbjct: 69  CAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIREN 128

Query: 354 FVLTAAHCI 362
           FVLT A C 
Sbjct: 129 FVLTTAKCS 137

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           G  +T E  G   L G++           ++  L T+VS Y  W  
Sbjct: 271 GSVVTREHRGSWFLTGVLGSQ--PVG-GQAHMVLVTKVSRYSLWFK 313

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  106 bits (266), Expect = 1e-26
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQL 207
           V +  + LG + L Q   ++  R  V +   H  F+  +L           S+D+ LL+L
Sbjct: 44  VDQYEVWLGKNKLFQEEPSAQHRL-VSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRL 102

Query: 208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
            +P  +T  ++P+ LP K     G +    GWG  +    +    LQ + + +L N  C+
Sbjct: 103 SKPADITDVVKPIALPTKEPK-PGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCA 161

Query: 268 TVIEESIGIGMLCA 281
            V  + +   MLCA
Sbjct: 162 KVYLQKVTDVMLCA 175

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           ++GG   +    PWQVA+       CGG LL+ ++VLTAAHC           D Y V  
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCY---------VDQYEVWL 51

Query: 380 GIVS 383
           G   
Sbjct: 52  GKNK 55

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  +     +L G  SYG   C   P  P +YT + ++  WI 
Sbjct: 190 GGPLICD----GILQGTTSYGPVPCGK-PGVPAIYTNLIKFNSWIK 230

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  105 bits (264), Expect = 1e-26
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
           LRD P   + + LG H++     T      V +V  + ++      NDI L+QL  P  L
Sbjct: 46  LRDIPQRLVNVVLGAHNVRTQEPTQQHFS-VAQVFLN-NYDAENKLNDILLIQLSSPANL 103

Query: 214 TGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
           + ++  V LPQ+ +    G +   +GWG        P+  LQ+L V V++          
Sbjct: 104 SASVATVQLPQQDQPVPHGTQCLAMGWGRVG-AHDPPAQVLQELNVTVVTFFCRPH---- 158

Query: 273 SIGIGMLCA-APDETQGTC 290
                 +C   P    G C
Sbjct: 159 -----NICTFVPRRKAGIC 172

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 321 ILGG-EADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+GG EA     P+  ++ +    G  FCGG L++  FVLTAAHC+             +
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRL-----VN 55

Query: 377 VLAG 380
           V+ G
Sbjct: 56  VVLG 59

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score = 57.5 bits (140), Expect = 7e-10
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    DG  ++ GI S+ + GCA    +PD +TRV+ Y+ WI 
Sbjct: 177 GGPLI--CDG--IIQGIDSFVIWGCA-TRLFPDFFTRVALYVDWIR 217

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  105 bits (264), Expect = 2e-26
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQLD 208
           ++ V+ LG H L    +T  V + V     H  +   +L           S+D+ LL+L 
Sbjct: 45  NKSVILLGRHSLFHPEDTGQVFQ-VSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLS 103

Query: 209 RPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
            P  LT  ++ + LP +  +  G   +  GWG            LQ +++ V+SN  C+ 
Sbjct: 104 EPAELTDAVKVMDLPTQEPAL-GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQ 162

Query: 269 VIEESIGIGMLCA 281
           V  + +   MLCA
Sbjct: 163 VHPQKVTKFMLCA 175

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 10/61 (16%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG E +    PWQV +A  G   CGG L++  +VLTAAHCI         ++   +L 
Sbjct: 1   IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCI---------RNKSVILL 51

Query: 380 G 380
           G
Sbjct: 52  G 52

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    +G  VL GI S+G   CA +P  P LYT+V  Y +WI 
Sbjct: 190 GGPLV--CNG--VLQGITSWGSEPCA-LPERPSLYTKVVHYRKWIK 230

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  104 bits (263), Expect = 3e-26
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 155 RDTPVSELVLHLGDHDLT-QLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
              P++   + LG      Q  E S  R  V +++           + + LL+L+R V L
Sbjct: 44  CHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG------SQLVLLKLERSVTL 97

Query: 214 TGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
              +  +CLP +      G +  + GWG T          L    + V+SN  C+     
Sbjct: 98  NQRVALICLPPEWYVVPPGTKCEIAGWGETK--GTGNDTVLNVALLNVISNQECNIKHRG 155

Query: 273 SIGIGMLCA 281
            +    +C 
Sbjct: 156 RVRESEMCT 164

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 321 ILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           ++GG    G  PW V++    G  FCGG+L+ E ++LTA  C            GY V  
Sbjct: 1   VVGGHP--GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCF---SSCHMPLTGYEVWL 55

Query: 380 GIVSYGVTGCAIMPSYPDLYTRVSEYIR 407
           G +                   V++ + 
Sbjct: 56  GTLFQNPQ----HGEPSLQRVPVAKMVC 79

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL        VL GI+      CA    +P ++TRVS ++ WIH
Sbjct: 179 GGPLACFTHNSWVLEGIIIPN-RVCA-RSRWPAVFTRVSVFVDWIH 222

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  104 bits (262), Expect = 4e-26
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 155 RDTPVSELVLHLGDHDLTQL-NETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
               + +    LG HD+    +E       V ++++          +D+ L++L RP  L
Sbjct: 43  PSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG------SDLVLMKLARPAVL 96

Query: 214 TGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
              +  + LP  G +        V GWG T   +      L+   + ++ N +CS     
Sbjct: 97  DDFVSTIDLPNYGSTIPEKTSCSVYGWGYTG--LINYDGLLRVAHLYIMGNEKCSQHHRG 154

Query: 273 SIGI--GMLCA 281
            + +    +CA
Sbjct: 155 KVTLNESEICA 165

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
           ++ G        W V++       CGG+L+ E +VLTA  C  +          Y    G
Sbjct: 1   VVNGIPTRTNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDL-----KDYEAWLG 55

Query: 381 I 381
           I
Sbjct: 56  I 56

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  EQ    ++ G++  G  GCA +P+ P ++ RV+ Y +WIH
Sbjct: 180 GGPLVCEQHKMRMVLGVIVPG-RGCA-IPNRPGIFVRVAYYAKWIH 223

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  102 bits (256), Expect = 2e-25
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
             +V++LG     +            R++ HS F+P    ND+AL+++   V  T  IQP
Sbjct: 51  VSVVVYLGSAVQYE----GEAVVNSERIISHSMFNPDTYLNDVALIKI-PHVEYTDNIQP 105

Query: 220 VCLPQKGE---SFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV-IEESIG 275
           + LP   E    F      V GWG ++      +  LQ     V+ N RC+       I 
Sbjct: 106 IRLPSGEELNNKFENIWATVSGWGQSN----TDTVILQYTYNLVIDNDRCAQEYPPGIIV 161

Query: 276 IGMLCAAPDETQGTC 290
              +C    + +  C
Sbjct: 162 ESTICGDTSDGKSPC 176

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score = 66.5 bits (163), Expect = 9e-13
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 321 ILGG-EADIGEFPWQVAIALD----GMFFCGGALLNEHFVLTAAHCI 362
           I+ G EA  G FP+Q  + +        +CGG+L++  ++LTAAHC+
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCV 47

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIHVN 412
           GGP        ++L G+VS+    GC      P  ++RV+ Y+ WI  N
Sbjct: 181 GGPFV--LSDKNLLIGVVSFVSGAGCE--SGKPVGFSRVTSYMDWIQQN 225

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  101 bits (255), Expect = 4e-25
 Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQLD 208
               L LG H+L     T+     V     H  F+  +L           S+D+ LL+L 
Sbjct: 45  DNYQLWLGRHNLFDDENTA-QFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLT 103

Query: 209 RPVP-LTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
            P   +T  ++ V LP +     G      GWG            LQ +++K+L N  C 
Sbjct: 104 EPADTITDAVKVVELPTEEPEV-GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECK 162

Query: 268 TVIEESIGIGMLCA 281
               + +   MLC 
Sbjct: 163 KAHVQKVTDFMLCV 176

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 10/61 (16%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG E +    PWQ A+     F CGG L++  +VLTAAHCI          D Y +  
Sbjct: 1   IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI---------SDNYQLWL 51

Query: 380 G 380
           G
Sbjct: 52  G 52

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    DG  VL G+ S+G   C   P+ P +  RV  Y++WI 
Sbjct: 191 GGPLM--CDG--VLQGVTSWGYVPCGT-PNKPSVAVRVLSYVKWIE 231

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  103 bits (258), Expect = 6e-24
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           +    S   + LG H    L         V R+             DIALL+L  P  +T
Sbjct: 607 KSPRPSSYKVILGAHQEVNLEPHV-QEIEVSRLFLEPTR------KDIALLKLSSPAVIT 659

Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--VIE 271
             + P CLP             + GWG T       +  L++ ++ V+ N  C+    + 
Sbjct: 660 DKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLLKEAQLPVIENKVCNRYEFLN 717

Query: 272 ESIGIGMLCA 281
             +    LCA
Sbjct: 718 GRVQSTELCA 727

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL   +   ++L G+ S+G  GCA  P+ P +Y RVS ++ WI 
Sbjct: 742 GGPLVCFEKDKYILQGVTSWG-LGCAR-PNKPGVYVRVSRFVTWIE 785

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 312 TYRQPRRRIILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTF 370
             ++   R++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+      + 
Sbjct: 554 EPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSS 613

Query: 371 EQDGYHVLAGIVS 383
               Y V+ G   
Sbjct: 614 ----YKVILGAHQ 622

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 90.3 bits (225), Expect = 4e-22
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
             G+ D    +E    +  + +V  +S ++   ++NDI LL+L      + T+  VCLP 
Sbjct: 52  VAGEFDQGSSSEKI-QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPS 110

Query: 225 KGESF-IGKRGHVVGWGVTSF 244
             + F  G      GWG+T +
Sbjct: 111 ASDDFAAGTTCVTTGWGLTRY 131

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 10/62 (16%)

Query: 321 ILGG-EADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
           I+ G EA  G +PWQV++    G  FCGG+L+NE++V+TAAHC               V+
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--------GVTTSDVVV 52

Query: 379 AG 380
           AG
Sbjct: 53  AG 54

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score = 90.3 bits (225), Expect = 7e-22
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 198 LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVT--SFPMGEPSPTLQK 255
            S+D+ LL+L  P  +T  ++ + LP +     G      GWG         E    +Q 
Sbjct: 6   YSHDLMLLRLQSPAKITDAVKVLELPTQEPEL-GSTCEASGWGSIEPGPDDFEFPDEIQC 64

Query: 256 LEVKVLSNARCSTVIEESIGIGMLCA 281
           +++ +L N  C+    + +   MLCA
Sbjct: 65  VQLTLLQNTFCADAHPDKVTESMLCA 90

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL    +G  +  GI S+G T C    + P +YT++  Y+ WI 
Sbjct: 105 GGPLI--CNG--MWQGITSWGHTPCG-SANKPSIYTKLIFYLDWID 145

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 94.2 bits (234), Expect = 4e-21
 Identities = 24/153 (15%), Positives = 46/153 (30%), Gaps = 36/153 (23%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFH---------PFVLSNDIALLQLDRPVPLTG 215
              +H +            +  VLFH +++         P     D+AL++L   +    
Sbjct: 264 DDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQ 323

Query: 216 TIQPVCLPQKGESF-IGKRGHVVGWGVT-----------SFPMGEPSPTLQKLEVKVLSN 263
           TI+P+CLP    +    +                     +  + E    L + EV + + 
Sbjct: 324 TIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNG 383

Query: 264 ARCST---------------VIEESIGIGMLCA 281
            +  +                I E +    LC 
Sbjct: 384 DKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 416

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 69.6 bits (170), Expect = 5e-13
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 308 HQGTTYRQPRRRIILGGEADIGEFPWQVAI----ALDGMFFCGGALLNEHFVLTAAHCI 362
            +  +              D  + PWQ  I       G   C GA+++E+FVLTAAHC 
Sbjct: 203 DESQSLSLCGMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCF 261

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVT-GCA-------IMPSYPDLYTRVSEYIRWIH 410
           GGPL   +    +  G++S+GV   C        +     D +  + + + W+ 
Sbjct: 433 GGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLK 486

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 85.9 bits (212), Expect = 4e-18
 Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 45/163 (27%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH---------PFVLSNDIALL 205
            D     + + +G                +  VLFH +++         P     D+AL+
Sbjct: 505 VDDKEHSIKVSVGGEK---------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALI 555

Query: 206 QLDRPVPLTGTIQPVCLPQKGESF------------IGKRGHVVGWGVTSFPMGEPSPTL 253
           +L   +    TI+P+CLP    +               K   +    + +  + E    L
Sbjct: 556 KLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKL 615

Query: 254 QKLEVKVLSNARCST---------------VIEESIGIGMLCA 281
            + EV + +  +  +                I E +    LC 
Sbjct: 616 TRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 658

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 64.0 bits (155), Expect = 4e-11
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 23/168 (13%)

Query: 247 GEPSPTLQKLE-----VKVLSNARCSTVIEESIGIG--------MLCAAPDETQGTCFVP 293
           G+P   + ++       K   N R   +     G+G           A+  + +   F  
Sbjct: 371 GDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKV 430

Query: 294 VSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL----DGMFFCGGAL 349
                      Q   +  +              D  + PWQ  I++     G   C GA+
Sbjct: 431 KDMENLEDVFYQMIDESQSLSLCGMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAV 490

Query: 350 LNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGI--VSYGVTGCAIMPSY 395
           ++E+FVLTAAHC          +    V  G       +      P+Y
Sbjct: 491 VSEYFVLTAAHCFTVDDK----EHSIKVSVGGEKRDLEIEVVLFHPNY 534

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVT-GCA-------IMPSYPDLYTRVSEYIRWIH 410
           GGPL   +    +  G++S+GV   C        +     D +  + + + W+ 
Sbjct: 675 GGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLK 728

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 85.0 bits (210), Expect = 4e-18
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 39/170 (22%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV---------LSNDIALL 205
                S   +++GD       E       + + +    F  F            +DIALL
Sbjct: 268 DGNDHSLWRVNVGDPKSQWGKE-----FLIEKAVISPGFDVFAKKNQGILEFYGDDIALL 322

Query: 206 QLDRPVPLTGTIQPVCLPQKGESFI------GKRGHVVGWGVTSFPMGEPSP-TLQKLEV 258
           +L + V ++   +P+CLP   E+ +      G         + +          L   ++
Sbjct: 323 KLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKL 382

Query: 259 KV-----LSNARCSTVIEESIGI-------------GMLCAAPDETQGTC 290
            +     +    C+ V+ +   +               LC+   E +  C
Sbjct: 383 NINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPC 432

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 75.0 bits (184), Expect = 9e-15
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 318 RRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHV 377
              +    +D    PW V I       C GAL+++ +VLTAAHC         +   + V
Sbjct: 222 VGNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRD----GNDHSLWRV 277

Query: 378 LAGIVS------YGVTGCAIMPSY 395
             G         + +    I P +
Sbjct: 278 NVGDPKSQWGKEFLIEKAVISPGF 301

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 56.5 bits (136), Expect = 7e-09
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 15/61 (24%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVT----GCA-----------IMPSYPDLYTRVSEYIRWI 409
           GG +  E+       G+VS+G+     G A            +P   D +  +     W+
Sbjct: 437 GGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWL 496

Query: 410 H 410
            
Sbjct: 497 R 497

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Length = 80

 Score = 68.7 bits (169), Expect = 6e-15
 Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 10/61 (16%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+GG E +    PWQVAI     F CGG L+N  +VLTAAHC           D Y V  
Sbjct: 1   IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCK---------NDNYEVWL 51

Query: 380 G 380
           G
Sbjct: 52  G 52

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score = 61.0 bits (149), Expect = 4e-12
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  +++G   L GIVS+G +      S P +Y RV+  + W+ 
Sbjct: 48  GGPLVCKKNGAWTLVGIVSWG-SSTC-STSTPGVYARVTALVNWVQ 91

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 320 IILGGE-----ADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQD 373
           +++G +     A+    P+     +  G   C G L+  + +LT  HC+      ++   
Sbjct: 1   VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60

Query: 374 GYHVLA 379
           G     
Sbjct: 61  GSVYPG 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	100.0
3hrz_D	741	Complement factor B; serine protease, glycosilated	100.0
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	100.0
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	100.0
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.97
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.95
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.92
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.92
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.92
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.92
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.92
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.91
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.86
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.86
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.85
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.83
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.72
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.69
3k6y_A	237	Serine protease, possible membrane-associated seri	99.57
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.48
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.48
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.47
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.45
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.43
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.37
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.35
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.35
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.32
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.31
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	99.3
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.26
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	99.24
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	99.22
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	99.21
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	99.18
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	99.18
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	99.18
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	99.18
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	99.18
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	99.18
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	99.17
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	99.17
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	99.17
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	99.17
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	99.17
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	99.16
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	99.16
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	99.16
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	99.16
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	99.16
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	99.16
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	99.15
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	99.15
1a7s_A	225	Heparin binding protein; serine protease homolog,	99.15
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	99.15
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	99.15
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	99.15
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	99.15
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	99.14
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	99.14
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	99.14
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	99.14
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	99.13
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	99.13
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	99.13
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	99.13
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	99.13
1aut_C	250	Activated protein C; serine proteinase, plasma cal	99.12
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	99.12
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	99.11
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	99.11
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	99.11
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	99.11
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	99.1
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	99.1
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	99.1
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	99.1
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	99.1
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	99.1
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	99.09
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	99.09
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	99.09
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	99.09
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	99.09
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	99.09
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	99.09
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	99.08
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	99.08
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	99.08
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	99.08
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	99.08
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	99.08
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	99.08
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	99.07
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	99.07
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	99.07
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	99.06
2aiq_A	231	Protein C activator; snake venom serine proteinase	99.06
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	99.06
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	99.05
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	99.05
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	99.05
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	99.05
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	99.05
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	99.03
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	99.03
1md8_A	329	C1R complement serine protease; innate immunity, a	99.02
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	99.02
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	99.02
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	99.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	99.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	98.99
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	98.98
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.96
1gpz_A	399	Complement C1R component; hydrolase, activation, i	98.96
1elv_A	333	Complement C1S component; trypsin-like serin prote	98.94
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	98.94
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	98.94
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.93
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	98.93
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	98.89
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	98.88
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.86
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	98.8
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	98.71
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.71
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.61
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	98.58
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	98.57
3hrz_D	741	Complement factor B; serine protease, glycosilated	98.52
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	98.46
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	98.28
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	98.24
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.2
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	98.19
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	98.18
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	98.18
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	98.1
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	98.1
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	97.99
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	97.77
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	97.26
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.19
2w5e_A	163	Putative serine protease; coiled coil, transmembra	95.47
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	95.26
3k6y_A	237	Serine protease, possible membrane-associated seri	95.2
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	95.06
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	93.89
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	93.83
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	92.96
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	92.93
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	92.89
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	92.2
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	91.65
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	90.11
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	89.99
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	89.62
3syj_A	1011	Adhesion and penetration protein autotransporter;	88.25
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	87.91
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	87.38
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	81.14

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=5.8e-49  Score=371.75  Aligned_cols=227  Identities=25%  Similarity=0.505  Sum_probs=199.6

Q ss_pred             eeEecCCCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        102 TYFKSPHHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       102 ~~~~~~g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      ..+|++|.+|.++   +|||+|++..    ++|+||||+++|||||   |||+.+       ..+.|++|.++...... 
T Consensus        13 ~~rIvgG~~a~~~---~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTA---AHC~~~-------~~~~v~~G~~~~~~~~~-   78 (245)
T 1t8o_A           13 LSRIVNGEEAVPG---SWPWQVSLQDKTGFHFCGGSLINENWVVTA---AHCGVT-------TSDVVVAGEFDQGSSSE-   78 (245)
T ss_dssp             ---CBTCEECCTT---SSTTEEEEECTTCCEEEEEEEEETTEEEEC---GGGCCC-------TTSEEEESCSBTTCSSS-
T ss_pred             CCceECCEECCCC---CCCceEEEEcCCCCeEEEEEEeeCCEEEEc---HHhCcC-------CCcEEEEeeeecCCCCC-
Confidence            3478999999988   4999999954    5899999999999999   999864       45789999998876544 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      ..+.+.|.++++||+|+..+..||||||||++|+.|+++++|||||.....+ .+..++++|||.+.......+..|+++
T Consensus        79 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~  158 (245)
T 1t8o_A           79 KIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQA  158 (245)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEE
T ss_pred             CcEEEEEEEEEeCCCCCCCCCCCCEEEEEECCCCcCCCceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEE
Confidence            5688999999999999998999999999999999999999999999876544 789999999999886553468899999


Q ss_pred             EEEEeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        257 EVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      .+++++.++|+..+...+.+.||||+ ..+.++|+|                                            
T Consensus       159 ~~~~~~~~~C~~~~~~~~~~~~~Ca~-~~~~~~C~G--------------------------------------------  193 (245)
T 1t8o_A          159 SLPLLSNTNCKKYWGTKIKDAMICAG-ASGVSSCMG--------------------------------------------  193 (245)
T ss_dssp             EEEEECHHHHHHHHGGGCCTTEEEEE-CSSCBCCTT--------------------------------------------
T ss_pred             EEeeEcchhhhHhhcCcCCCceEEcc-CCCCccCcc--------------------------------------------
Confidence            99999999999988777899999998 347899999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                ||||||++..+++|+|+||+||| .+|. ..+.|+|||||+.|++||++++..
T Consensus       194 --------------------------DSGgPL~~~~~~~~~l~GI~S~g-~~c~-~~~~p~vyt~V~~~~~WI~~~~~~  244 (245)
T 1t8o_A          194 --------------------------DSGGPLVCKKNGAWTLVGIVSWG-SSTC-STSTPGVYARVTALVNWVQQTLAA  244 (245)
T ss_dssp             --------------------------CTTCEEEEEETTEEEEEEEEEEC-CTTC-CTTSEEEEEEGGGTHHHHHHHHHT
T ss_pred             --------------------------cCcCCEEEEECCEEEEEEEEEeC-CCCC-CCCCCEEEEEHHHHHHHHHHHHcc
Confidence                                      99999999989999999999999 7888 678999999999999999998864

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=6.8e-49  Score=369.19  Aligned_cols=232  Identities=28%  Similarity=0.519  Sum_probs=205.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCC--CCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLR--DTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~--~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|++.    .++|+||||+++|||||   |||+.+...  ...+..+.|++|.++........
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTA---AhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~   74 (241)
T 3ncl_A            1 VVGGTDADEG---EWPWQVSLHALGQGHICGASLISPNWLVSA---AHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPG   74 (241)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTTEEEEEEEECSSSEEEEC---GGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTT
T ss_pred             CCCCeECCCC---CCCcEEEEEcCCCceEEEEEEeeCCEEEEc---HHhcccCCCccccCCceEEEEEeccccccCCCCC
Confidence            5788888888   599999995    25899999999999999   999965422  22457899999999887664446


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|+++++||+|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++.
T Consensus        75 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~  153 (241)
T 3ncl_A           75 VQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGG-TGALILQKGE  153 (241)
T ss_dssp             CEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTS-CBCSBCEEEE
T ss_pred             ceEEEEEEEEECCCCCCCCCCCcEEEEEECCCCcccCccCceEcCCcccCCCCCCEEEEEEecccCCCC-CcCceeeEEe
Confidence            688999999999999999999999999999999999999999999877655 78999999999987655 5678899999


Q ss_pred             EEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        258 VKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       258 v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +++++..+|+..+...+++.||||+... +.++|+|                                            
T Consensus       154 ~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G--------------------------------------------  189 (241)
T 3ncl_A          154 IRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQG--------------------------------------------  189 (241)
T ss_dssp             EEECCHHHHHHHSTTTCCTTEEEEECTTCSSBCCTT--------------------------------------------
T ss_pred             EEEECHHHhhhhcccCCCCCeEEeCCCCCCCccCCC--------------------------------------------
Confidence            9999999999998878999999999765 7899999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                ||||||++.. +++|+|+||+||| .+|+ ..+.|+|||||+.|++||++++++
T Consensus       190 --------------------------DsGgPl~~~~~~g~~~l~Gi~S~g-~~c~-~~~~p~vyt~v~~y~~WI~~~~~i  241 (241)
T 3ncl_A          190 --------------------------DSGGPLSSVEADGRIFQAGVVSWG-DGCA-QRNKPGVYTRLPLFRDWIKENTGV  241 (241)
T ss_dssp             --------------------------CTTCEEEEECTTSCEEEEEEEEEC-SSSS-CTTCCEEEEESGGGHHHHHHHHCC
T ss_pred             --------------------------cCCCCEEEEcCCCcEEEEEEEEEC-CCCC-CCCCCeEEEEHHHHHHHHHHHhCC
Confidence                                      9999999865 8899999999999 8898 778999999999999999999875

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=3.7e-49  Score=379.69  Aligned_cols=241  Identities=27%  Similarity=0.461  Sum_probs=203.5

Q ss_pred             CCCCccccccceeEecCCCCCCCCCCCCCcceeeEc--------cccceEEEeeCCeEEeeccceeeecCCCCCCCccce
Q psy15063         91 YSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIR--------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSEL  162 (417)
Q Consensus        91 ~~CG~~~~~~~~~~~~~g~~a~~~~~~~~PW~v~i~--------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~  162 (417)
                      ..||..   ....+|++|.+|.++   +|||+|+|.        .++|+||||+++|||||   |||+.+.........+
T Consensus        12 ~~CG~~---~~~~rIvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTA---AHC~~~~~~~~~~~~~   82 (278)
T 2olg_A           12 NDCGYQ---VEADKILNGDDTVPE---EFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTA---AHCVAGRVLRVVGALN   82 (278)
T ss_dssp             SSCSCC---CCCCCSCCSSBCCTT---SSTTEEEEEEECTTCCEEEEEEEEECSSSEEEEC---GGGTSTHHHHHTCEEE
T ss_pred             hHhCCC---CCCCceECCEECCCC---CCCceEEEEEecCCCCcceeEEEEEEeCCEEEEh---HHhCCCccccccccee
Confidence            468832   234578999999988   499999994        35899999999999999   9999642111112467


Q ss_pred             EEEeceecCCCCCC----------CCcEEEeeeEEEeCCCCCCCCC--CCCeEEEEecCCcCCCCceeeeeCCCCCCcc-
Q psy15063        163 VLHLGDHDLTQLNE----------TSHVRRGVRRVLFHSHFHPFVL--SNDIALLQLDRPVPLTGTIQPVCLPQKGESF-  229 (417)
Q Consensus       163 ~V~lG~~~~~~~~~----------~~~q~~~V~~i~iHP~Y~~~~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-  229 (417)
                      .|++|.++.....+          ...+.+.|.++++||+|+..+.  .||||||||++|+.|+++|+|||||...... 
T Consensus        83 ~V~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~  162 (278)
T 2olg_A           83 KVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQ  162 (278)
T ss_dssp             EEEESCSBTTCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCC
T ss_pred             EEEeCcccCCCCccccccccccCCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCCCcC
Confidence            89999998765421          1467889999999999987765  7999999999999999999999999876543 


Q ss_pred             CCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhc---cCCCCeEEecCCCCCCCccCCCCCcccccccccc
Q psy15063        230 IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE---SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQ  306 (417)
Q Consensus       230 ~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~---~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~  306 (417)
                      .+..++++|||.+..+  ..+..|+++.+++++.++|+..+..   .+++.||||+...+.++|+|              
T Consensus       163 ~g~~~~v~GWG~t~~~--~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~C~G--------------  226 (278)
T 2olg_A          163 VGQRLTVVGWGRTETG--QYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSCGG--------------  226 (278)
T ss_dssp             TTCEEEEEESCCSSSC--CCCSBCEEEEEEBCCGGGGGGGGSSTTCCCCTTEEEECCTTCTTCCCC--------------
T ss_pred             CCCEEEEEcCCcCCCC--CccchhhcccccccCHHHHHHHhccccccCCCceEeeecCCCCeeCCC--------------
Confidence            7899999999998754  3678999999999999999988764   58899999998778899999              


Q ss_pred             cccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEe-eCCeEEEEeEEEEc
Q psy15063        307 FHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFE-QDGYHVLAGIVSYG  385 (417)
Q Consensus       307 wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~-~~g~~~l~GI~S~g  385 (417)
                                                                              ||||||++. .+++|+|+||+|||
T Consensus       227 --------------------------------------------------------DSGGPL~~~~~~~~~~l~GIvS~g  250 (278)
T 2olg_A          227 --------------------------------------------------------DSGGPLLAERANQQFFLEGLVSFG  250 (278)
T ss_dssp             --------------------------------------------------------CTTCEEEEEEGGGEEEEEEEEEEC
T ss_pred             --------------------------------------------------------ccCcceEEEcCCCcEEEEEEEEEC
Confidence                                                                    999999998 47899999999999


Q ss_pred             CCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        386 VTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       386 ~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                       .+|+ ..+.|+|||||+.|++||+++|.
T Consensus       251 -~~C~-~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          251 -ATCG-TEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             -CBCS-TTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             -CCCC-CCCCCcEEeEHHHHHHHHHHhhC
Confidence             8999 67889999999999999999875

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=6.8e-49  Score=372.46  Aligned_cols=230  Identities=28%  Similarity=0.457  Sum_probs=201.1

Q ss_pred             eeEecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCC
Q psy15063        102 TYFKSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQL  174 (417)
Q Consensus       102 ~~~~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~  174 (417)
                      ..+|++|.+|.++   +|||+|+|.       .++|+||||+++|||||   |||+.+      ...+.|++|.+++...
T Consensus        11 ~~rIvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTA---AHC~~~------~~~~~V~~G~~~~~~~   78 (251)
T 1pyt_D           11 SARVVGGEDAIPH---SWPWQISLQYLRDNTWRHTCGGTLITPNHVLTA---AHCISN------TLTYRVALGKNNLEVE   78 (251)
T ss_dssp             SSSCCSSCCCCTT---SSTTEEEEEEEETTEEEEEEEEEEEETTEEEEC---GGGCCT------TCCEEEEESCSBTTCS
T ss_pred             CCccCCCEECCCC---CCCceEEEEEEcCCCcceEEEeEEecCCEEEEC---HHHhCC------CceEEEEEcccccccC
Confidence            3579999999988   499999985       36899999999999999   999963      3678999999988654


Q ss_pred             CCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccc
Q psy15063        175 NETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTL  253 (417)
Q Consensus       175 ~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L  253 (417)
                      .....+.+.|.++++||+|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|
T Consensus        79 ~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L  157 (251)
T 1pyt_D           79 DEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNG-PIAAEL  157 (251)
T ss_dssp             CCSSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCS-CCCSBC
T ss_pred             CCCCcEEEEEEEEEECCCCCCCCCCCCEEEEEECCCcccCCCeeeeEcCCCcccCCCCCEEEEEecccCCCCC-Ccccch
Confidence            3335678899999999999998899999999999999999999999999876544 68899999999987654 567889


Q ss_pred             eEEEEEEeChhhhhhhhh--ccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccC
Q psy15063        254 QKLEVKVLSNARCSTVIE--ESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEF  331 (417)
Q Consensus       254 ~~~~v~i~~~~~C~~~~~--~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~  331 (417)
                      +++.+++++..+|+..+.  ..+.+.||||+...+.++|+|                                       
T Consensus       158 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~C~G---------------------------------------  198 (251)
T 1pyt_D          158 QQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNG---------------------------------------  198 (251)
T ss_dssp             BCCEEECBCHHHHTSTTTTTTTCCTTEEEECCSCSSCCCCS---------------------------------------
T ss_pred             heeEeEeeCHHHcchhhccCCCcCCCeEEecCCCCCccCCC---------------------------------------
Confidence            999999999999987653  368899999997657899999                                       


Q ss_pred             CcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHh
Q psy15063        332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       332 p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                     ||||||++..+++|+|+||+|||. .+|+ ..+.|+|||||+.|++||+
T Consensus       199 -------------------------------DSGgPL~~~~~~~~~l~GI~S~g~~~~C~-~~~~p~vyt~V~~~~~WI~  246 (251)
T 1pyt_D          199 -------------------------------DSGGPLNCQADGQWDVRGIVSFGSGLSCN-TFKKPTVFTRVSAYIDWIN  246 (251)
T ss_dssp             -------------------------------CTTCEEEEESSSSEEEEEEEEECCSSCTT-BTTBCEEEEEGGGGHHHHH
T ss_pred             -------------------------------CCCCceEEEECCCEEEEEEEEECCCCCCC-CCCCCeEEEEHHHHHHHHH
Confidence                                           999999998889999999999995 3798 6789999999999999999


Q ss_pred             hhhcc
Q psy15063        411 VNAIV  415 (417)
Q Consensus       411 ~~~~~  415 (417)
                      +++++
T Consensus       247 ~~~~l  251 (251)
T 1pyt_D          247 QKLQL  251 (251)
T ss_dssp             HHTTC
T ss_pred             HHhcC
Confidence            99864

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=1.2e-48  Score=366.46  Aligned_cols=229  Identities=28%  Similarity=0.500  Sum_probs=202.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|++.   .++|+||||+++|||||   |||+.+..  ..+..+.|++|.++.........+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLI~~~~VLTA---AHC~~~~~--~~~~~~~v~~g~~~~~~~~~~~~~~   72 (235)
T 4dgj_A            1 IVGGSDAKEG---AWPWVVGLYYDDRLLCGASLVSSDWLVSA---AHCVYGRN--LEPSKWTAILGLHMKSNLTSPQTVP   72 (235)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEECSSSEEEEC---HHHHTTSC--SSGGGEEEEESCCBTTCCSCTTCEE
T ss_pred             CCCCccCCCC---CCCcEEEEeeCCCeEEEEEEeeCCEEEEC---HHhcCCCC--CCCccEEEEEeeecccccCCCceeE
Confidence            5688888887   599999994   45899999999999999   99996532  2457889999998876654446678


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.|+++++||+|+..+..||||||||++|+.|+++++|||||.....+ .+..++++|||.+.... ..+..|+++.+++
T Consensus        73 ~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~  151 (235)
T 4dgj_A           73 RLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQG-TTADILQEADVPL  151 (235)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTC-CBCSBCEEEEEEE
T ss_pred             EeEEEEEECCCCCCCCCCCeEEEEEECCccccCCcccccCCCCcccCCCCCCEEEEEecccCCCCC-ccchhheEeEeee
Confidence            889999999999999999999999999999999999999999877654 78999999999887654 5688999999999


Q ss_pred             eChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEc
Q psy15063        261 LSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIA  338 (417)
Q Consensus       261 ~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~  338 (417)
                      ++..+|+..+.. .+++.||||+... +.++|+|                                              
T Consensus       152 ~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G----------------------------------------------  185 (235)
T 4dgj_A          152 LSNERCQQQMPEYNITENMICAGYEEGGIDSCQG----------------------------------------------  185 (235)
T ss_dssp             ECHHHHHHHCTTSCCCTTEEEECCTTCCCBCCTT----------------------------------------------
T ss_pred             cCHHHhhhhccCccCCCCeEeecCCCCCCccCCC----------------------------------------------
Confidence            999999998765 6889999998765 7899999                                              


Q ss_pred             cCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        339 LDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       339 ~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                              ||||||++..+++|+|+||+||| .+|+ .++.|+|||||+.|++||+++++
T Consensus       186 ------------------------DsGgPl~~~~~~~~~l~Gi~S~g-~~c~-~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          186 ------------------------DSGGPLMCQENNRWFLAGVTSFG-YECA-LPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             ------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ------------------------CCCCeEEEEECCcEEEEEEEEEc-CCCC-CCCCCEEEeeHHHHHHHHHHHhC
Confidence                                    99999999999999999999999 8898 78899999999999999999874

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=1.2e-48  Score=367.64  Aligned_cols=227  Identities=31%  Similarity=0.521  Sum_probs=198.8

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc-------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ-------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~-------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.++   +|||+|++..       ++|+||||+++|||||   |||+.+.. ..++..+.|++|.+++..... 
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTA---AHC~~~~~-~~~~~~~~v~~G~~~~~~~~~-   72 (237)
T 2f91_A            1 IVGGTDATLG---EFPYQLSFQETFIGFSFHFCGASIYNENYAITA---GHCVYGDD-YENPSGLQIVAGELDMSVNEG-   72 (237)
T ss_dssp             CBSCEECCTT---TSTTEEEEEEEETTEEEEEEEEEEEETTEEEEC---GGGTTTSC-TTSCCSEEEEESCSBTTSCCS-
T ss_pred             CCCccCCCCC---CCCcEEEEEEecCCCCcceEEEEEeeCCEEEEc---HHhCCCCc-cCCcccEEEEECCeeccCCCC-
Confidence            5788888887   4999999852       3599999999999999   99997532 124577999999998865444 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      ..+.+.|+++++||+|+..+..||||||||++|+.|+++++|||||..... .+..++++|||.+.... ..+..|+++.
T Consensus        73 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-~~~~~~v~GwG~~~~~~-~~~~~L~~~~  150 (237)
T 2f91_A           73 SEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHT-ATGDVIVTGWGTTSEGG-NTPDVLQKVT  150 (237)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCC-CCSEEEEEESCCSSTTC-CCCSBCEEEE
T ss_pred             ccEEEEEEEEEECCCCCCCCCCCcEEEEEECCCcccCCceeeccCCCCCCC-CCCcEEEEECCcCCCCC-CccceeeEEE
Confidence            568899999999999999889999999999999999999999999987654 78899999999987654 5678999999


Q ss_pred             EEEeChhhhhhhhh-ccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        258 VKVLSNARCSTVIE-ESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       258 v~i~~~~~C~~~~~-~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      ++++++++|+..+. ..+.+.||||+... +.++|+|                                           
T Consensus       151 ~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  187 (237)
T 2f91_A          151 VPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQG-------------------------------------------  187 (237)
T ss_dssp             EEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBCCTT-------------------------------------------
T ss_pred             EeEcCHHHhhhhhCCCCcCCCeEEEecCCCCCCCCCC-------------------------------------------
Confidence            99999999998875 36789999999765 7899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhh
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                                                 ||||||++..+++|+|+||+||| .+|+ .++.|+|||||+.|++||+++|
T Consensus       188 ---------------------------DSGgPL~~~~~~~~~l~Gi~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          188 ---------------------------DSGGPLAASDTGSTYLAGIVSWG-YGCA-RPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             ---------------------------CTTCEEEECTTSSCEEEEEEEEE-SSSS-CTTCCEEEEEGGGSHHHHHHHC
T ss_pred             ---------------------------cCCCCeEEecCCCEEEEEEEEec-CCCC-CCCCCcEEEEHHHhHHHHHHhc
Confidence                                       99999999888899999999999 8999 6789999999999999999876

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=1.7e-48  Score=367.57  Aligned_cols=226  Identities=30%  Similarity=0.486  Sum_probs=197.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc-------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ-------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~-------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.++   +|||+|+|..       ++|+||||+++|||||   |||+..      ...+.|++|.+++...+. 
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTA---AHC~~~------~~~~~V~~G~~~~~~~~~-   67 (241)
T 1bru_P            1 VVGGEDARPN---SWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTA---AHCISS------SRTYRVVLGRHSLSTNEP-   67 (241)
T ss_dssp             CBSCEECCTT---SSTTEEEEEEEETTEEEEEEEEEEEETTEEEEC---GGGCCT------TSCEEEEESCSBSSSCCT-
T ss_pred             CCCCeECCCC---CcCcEEEEEEecCCceeeEEEeEEeeCCEEEEc---HHhccc------CCceEEEEEcccccCCCC-
Confidence            5788888888   5999999953       6899999999999999   999962      267899999998876554 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCC--CCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccce
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLS--NDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~--nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                      ..+.+.|+++++||+|+.....  ||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+
T Consensus        68 ~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~  146 (241)
T 1bru_P           68 GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNG-ASPDILQ  146 (241)
T ss_dssp             TCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTS-CCCSBCE
T ss_pred             ccEEEEEEEEEECCCCCCCCCCCCCcEEEEEeCCCcccCCccCCcccCCCcCCCCCCCEEEEEEccccCCCC-CCCccce
Confidence            5688999999999999988777  999999999999999999999999876544 78899999999987654 5678999


Q ss_pred             EEEEEEeChhhhhhh--hhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        255 KLEVKVLSNARCSTV--IEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~--~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      ++.+++++.++|+..  +...+.+.||||+...+.++|+|                                        
T Consensus       147 ~~~~~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~C~G----------------------------------------  186 (241)
T 1bru_P          147 QGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCNG----------------------------------------  186 (241)
T ss_dssp             EEEEEEECHHHHTSTTTTGGGCCTTEEEECCSSSSBCCTT----------------------------------------
T ss_pred             eCEEEEecHHHhCcccccCCcCCCceEeecCCCCCccCCC----------------------------------------
Confidence            999999999999986  33368899999996557899999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                    ||||||++.. +++|+|+||+|||. .+|+ ..+.|+|||||+.|++||+
T Consensus       187 ------------------------------DSGgPL~~~~~~g~~~l~Gi~S~g~~~~C~-~~~~p~vyt~V~~~~~WI~  235 (241)
T 1bru_P          187 ------------------------------DSGGPLNCQGANGQWQVHGIVSFGSSLGCN-YYHKPSVFTRVSNYIDWIN  235 (241)
T ss_dssp             ------------------------------CTTCEEEEECTTSCEEEEEEEEECBTTBSS-CTTCCEEEEEGGGSHHHHH
T ss_pred             ------------------------------CCCCcEEEECCCCCEEEEEEEEEcCCCCCC-CCCCCcEEEEHHHhHHHHH
Confidence                                          9999999987 88999999999994 2898 6789999999999999999


Q ss_pred             hhhcc
Q psy15063        411 VNAIV  415 (417)
Q Consensus       411 ~~~~~  415 (417)
                      ++|..
T Consensus       236 ~~i~~  240 (241)
T 1bru_P          236 SVIAN  240 (241)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98863

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=7.4e-49  Score=369.21  Aligned_cols=227  Identities=27%  Similarity=0.445  Sum_probs=199.8

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|+|..      ++|+||||+++|||||   |||+.+..   .+..+.|++|.++...... .
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTA---AHC~~~~~---~~~~~~v~~G~~~~~~~~~-~   70 (238)
T 3bg8_A            1 IVGGTASVRG---EWPWQVTLHTTSPTQRHLCGGSIIGNQWILTA---AHCFYGVE---SPKILRVYSGILNQSEIKE-D   70 (238)
T ss_dssp             CBSCEECCTT---SSTTEEEEEECSSSCEEEEEEEEEETTEEEEC---GGGGTTCC---CGGGEEEECSCSBGGGCCT-T
T ss_pred             CCCCeECCCC---CcCcEEEEEeecCCCcEEEEEEEeeCCEEEEC---HHHCCCCC---CCceEEEEEeeccCCcCCC-C
Confidence            5788888887   5999999953      5899999999999999   99996531   3467899999998765544 5


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|+++++||+|+.....||||||||++|+.|+++++|||||...... .+..|+++|||.+.... ..+..|+++.
T Consensus        71 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~  149 (238)
T 3bg8_A           71 TSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRD-KIQNTLQKAK  149 (238)
T ss_dssp             SCCEEEEEEEECTTCCCGGGSCCCEEEEESSCCCCBTTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSC-CCCSBCEEEE
T ss_pred             ceEEeeEEEEECCCCCCCCCCCcEEEEEECCccccCCCcccCCCCCCccCcCCCCeEEEEecCCCCCCC-ChhhhhcEee
Confidence            677889999999999998889999999999999999999999999876433 78899999999987655 4678999999


Q ss_pred             EEEeChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        258 VKVLSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       258 v~i~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      ++++++++|+..+.. .+.+.||||+... +.++|+|                                           
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  186 (238)
T 3bg8_A          150 IPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKG-------------------------------------------  186 (238)
T ss_dssp             CCEECHHHHHHHCTTSCCCTTEEEECCTTCCCBCCTT-------------------------------------------
T ss_pred             EEEECHHHhhhhhcCCCCCCCeEeecCCCCCCCcCCC-------------------------------------------
Confidence            999999999988765 5889999999765 7899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                 ||||||++..+++|+|+||+||| .+|+ ..+.|+|||||+.|++||++++.
T Consensus       187 ---------------------------DSGgPL~~~~~~~~~l~GI~S~g-~~C~-~~~~p~vyt~V~~y~~WI~~~~~  236 (238)
T 3bg8_A          187 ---------------------------DSGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWILEKTQ  236 (238)
T ss_dssp             ---------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHHHHS
T ss_pred             ---------------------------CCCcceEEEECCeEEEEEEEEEC-CCCC-CCCCCcEEEeHHHHHHHHHHHHh
Confidence                                       99999999989999999999999 7998 67899999999999999999885

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=2.2e-48  Score=366.41  Aligned_cols=226  Identities=25%  Similarity=0.423  Sum_probs=198.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.++   +|||+|+|.       .++|+||||+++|||||   |||+...      ..+.|++|.+++...+. 
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGsLI~~~~VLTA---AHC~~~~------~~~~v~~G~~~~~~~~~-   67 (240)
T 1gvk_B            1 VVGGTEAQRN---SWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTA---AHCVDRE------LTFRVVVGEHNLNQNNG-   67 (240)
T ss_dssp             CBTCEECCTT---SCTTEEEEEEEETTEEEEEEEEEEEETTEEEEC---GGGGCSC------CCEEEEESCSBTTSCCS-
T ss_pred             CCCCeECCCC---CcCEEEEEEecCCCccCceEEEEEeeCCEEEEC---HHHCCCC------cceEEEECCeecccCCC-
Confidence            5788888887   599999985       36899999999999999   9999642      67899999998876554 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCC--CCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccce
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVL--SNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                      ..+.+.|+++++||+|+....  .||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+
T Consensus        68 ~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~  146 (240)
T 1gvk_B           68 TEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNG-QLAQTLQ  146 (240)
T ss_dssp             CCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTC-CBCSBCE
T ss_pred             cceEEEEEEEEECCCCCCCCCCCCCcEEEEEECCccccCCCccceecCCCCCCCCCCCEEEEEecCcCCCCC-Ccchhcc
Confidence            568889999999999998877  8999999999999999999999999876544 78999999999987654 5678999


Q ss_pred             EEEEEEeChhhhhhh--hhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        255 KLEVKVLSNARCSTV--IEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~--~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      ++.+++++...|+..  +...+.+.||||+...+.++|+|                                        
T Consensus       147 ~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~C~G----------------------------------------  186 (240)
T 1gvk_B          147 QAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQG----------------------------------------  186 (240)
T ss_dssp             EEECCEECHHHHTSTTTTGGGCCTTEEEECCSSSCBCCTT----------------------------------------
T ss_pred             EEEEEEEcHHHhccccccCccCCcceEeecCCCCCcccCC----------------------------------------
Confidence            999999999999876  33368899999996557899999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHhh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                                                    ||||||++..+++|+|+||+|||. .+|+ ..+.|+|||||+.|++||++
T Consensus       187 ------------------------------DSGgPL~~~~~g~~~l~Gi~S~g~~~~C~-~~~~p~vyt~V~~~~~WI~~  235 (240)
T 1gvk_B          187 ------------------------------DSGGPLHCLVNGQYAVHGVTSFVSRLGCN-VTRKPTVFTRVSAYISWINN  235 (240)
T ss_dssp             ------------------------------CTTCEEEEEETTEEEEEEEEEECBTTBSS-CTTCCEEEEEGGGSHHHHHH
T ss_pred             ------------------------------CCcCceEEEECCcEEEEEEEEEeCCCCCC-CCCCCcEEEeHHHHHHHHHH
Confidence                                          999999998899999999999994 3898 67899999999999999999


Q ss_pred             hhcc
Q psy15063        412 NAIV  415 (417)
Q Consensus       412 ~~~~  415 (417)
                      ++..
T Consensus       236 ~i~~  239 (240)
T 1gvk_B          236 VIAS  239 (240)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8863

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=1.6e-48  Score=365.93  Aligned_cols=226  Identities=29%  Similarity=0.525  Sum_probs=199.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|++.   .++|+||||+++|||||   |||+...      ..+.|++|.+++..... ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AhC~~~~------~~~~v~~G~~~~~~~~~-~~~~   67 (235)
T 2wph_S            1 VVGGEDAKPG---QFPWQVVLNGKVDAFCGGSIVNEKWIVTA---AHCVETG------VKITVVAGEHNIEETEH-TEQK   67 (235)
T ss_dssp             CBSCEECCTT---SSTTEEEEESSSTTCEEEEEEETTEEEEC---GGGCCTT------SCCEEEESCCBTTSCCS-CCEE
T ss_pred             CCCCEECCCC---CCCeEEEEccCCCeeEEEEEEeCCEEEEC---HHHCcCC------CCEEEEEcccccCCCCC-CcEE
Confidence            5788888888   499999995   46999999999999999   9999643      46899999998876554 5688


Q ss_pred             EeeeEEEeCCCCCC--CCCCCCeEEEEecCCcCCCCceeeeeCCCCCCc--c-CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        182 RGVRRVLFHSHFHP--FVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES--F-IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~--~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~--~-~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      +.|.++++||+|+.  ....||||||||++|+.|+++++|||||.....  + .+..++++|||.+.... ..+..|+++
T Consensus        68 ~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~  146 (235)
T 2wph_S           68 RNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKG-RSALVLQYL  146 (235)
T ss_dssp             EEEEEEEECTTTTSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTS-CBCSBCEEE
T ss_pred             eeeEEEEeCCCCcccCCcCCCCEEEEEECCcCcCCCCccccCCCCCcccccccCCccEEEEeCCCccCCC-CccchheEe
Confidence            89999999999998  678899999999999999999999999976432  1 57899999999987654 567899999


Q ss_pred             EEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        257 EVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      .+++++.++|+..+...+.+.||||+... +.++|+|                                           
T Consensus       147 ~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  183 (235)
T 2wph_S          147 RVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQG-------------------------------------------  183 (235)
T ss_dssp             EEEEECHHHHHHTCSSCCCTTEEEESCTTCSCBCCTT-------------------------------------------
T ss_pred             eeeeeCHHHhcCcccCCCCCCEEEeCCCCCCCccCCC-------------------------------------------
Confidence            99999999999887767899999998755 7899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                 ||||||++..+++|+|+||+||| .+|+ ..+.|+|||||+.|++||+++++.
T Consensus       184 ---------------------------DsGgPl~~~~~~~~~l~GI~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~~~~~  234 (235)
T 2wph_S          184 ---------------------------DSGGPHVTEVEGTSFLTGIISWG-EECA-MKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             ---------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHHHCCC
T ss_pred             ---------------------------CCCCceEEeECCeEEEEEEEEEC-CCCC-CCCCCeEEEEHHHhHHHHHHHHhc
Confidence                                       99999999889999999999999 7898 678999999999999999999876


Q ss_pred             C
Q psy15063        416 T  416 (417)
Q Consensus       416 ~  416 (417)
                      |
T Consensus       235 ~  235 (235)
T 2wph_S          235 T  235 (235)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=3e-48  Score=365.58  Aligned_cols=229  Identities=25%  Similarity=0.443  Sum_probs=200.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|+|..      ++|+||||+++|||||   |||+.+..   ....+.|++|.+++..... .
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTA---AHC~~~~~---~~~~~~v~~G~~~~~~~~~-~   70 (241)
T 2any_A            1 IVGGTESSWG---EWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTA---AHCFDGLP---LQDVWRIYSGILELSDITK-D   70 (241)
T ss_dssp             CBSCEECCTT---SSTTEEEEEEESSSEEEEEEEEEEETTEEEEC---GGGGSSCC---CSTTEEEECSCSBGGGCCT-T
T ss_pred             CCCCEECCCC---CCCcEEEEEEEcCCCceEEEEEEecCCEEEEC---HHHcCCCC---CCccEEEEeeeeecccccc-C
Confidence            5688888887   5999999853      5899999999999999   99996532   2356899999988765444 4


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|+++++||+|+.....||||||||++|+.|+++++|||||...... .+..|+++|||.+.... ..+..|+++.
T Consensus        71 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~  149 (241)
T 2any_A           71 TPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKG-EIQNILQKVN  149 (241)
T ss_dssp             SCCBCEEEEEECTTCCTTSSSSCCEEEEESSCCCCBTTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTC-CCCSBCEEEE
T ss_pred             ceEEeeEEEEECCCCCCCCCCCCeEEEEeCCcccCCCCcceeEcCCcccCCCCCCeEEEEecccCCCCC-CcCchhheeE
Confidence            567789999999999998899999999999999999999999999876543 78999999999987655 4678999999


Q ss_pred             EEEeChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        258 VKVLSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       258 v~i~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      ++++++.+|+..+.. .+++.||||+... +.++|+|                                           
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  186 (241)
T 2any_A          150 IPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKG-------------------------------------------  186 (241)
T ss_dssp             EEEECHHHHHTTSCTTCSCTTEEEECCTTCCCBCCTT-------------------------------------------
T ss_pred             eEEeCHHHhhhHhccCCCCcCcEeecCCCCCCccCCC-------------------------------------------
Confidence            999999999988765 5889999998765 7899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                 ||||||++..+++|+|+||+||| .+|. ..+.|+|||||+.|++||++++..
T Consensus       187 ---------------------------DsGgPl~~~~~~~~~l~GI~S~g-~~c~-~~~~p~vyt~V~~~~~WI~~~~~~  237 (241)
T 2any_A          187 ---------------------------DSGGPLVCKHNGMWRLVGITSWG-EGCA-RREQPGVYTKVAEYMDWILEKTQS  237 (241)
T ss_dssp             ---------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             ---------------------------CCCCcEEEEECCEEEEEEEEEec-CCCC-CCCCCeEEEEHHHhHHHHHHHhhc
Confidence                                       99999999989999999999999 7898 678899999999999999999875


Q ss_pred             C
Q psy15063        416 T  416 (417)
Q Consensus       416 ~  416 (417)
                      .
T Consensus       238 ~  238 (241)
T 2any_A          238 S  238 (241)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=2.7e-48  Score=368.19  Aligned_cols=226  Identities=29%  Similarity=0.520  Sum_probs=196.8

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      |++|.+|.++   +|||+|+|..    ++|+||||+++|||||   |||+.+.      ..+.|++|.+++...+. ..+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~CgGsLI~~~~VLTA---AHC~~~~------~~~~v~~G~~~~~~~~~-~~~   67 (250)
T 1aut_C            1 LIDGKMTRRG---DSPWQVVLLDSKKKLACGAVLIHPSWVLTA---AHCMDES------KKLLVRLGEYDLRRWEK-WEL   67 (250)
T ss_dssp             CBSCEECCTT---SCTTEEEEECTTSCEEEEEEEEETTEEEEC---GGGSSSC------SCCEEEESCCBTTCCCT-TCE
T ss_pred             CCCCEECCCC---CCCCEEEEecCCCceEEEEEEeeCCEEEEC---hHHcCCC------CceEEEEcccccCCCCC-ccE
Confidence            5788888888   4999999953    5899999999999999   9999642      56889999998876554 568


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCC-----ccCCCeEEEEEcCccCCCCCCC----Cc
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-----SFIGKRGHVVGWGVTSFPMGEP----SP  251 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-----~~~~~~~~v~GWG~~~~~~~~~----~~  251 (417)
                      .+.|.++++||+|+..+..||||||||++|+.|+++++|||||....     ...+..++++|||.+.......    +.
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~  147 (250)
T 1aut_C           68 DLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTF  147 (250)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSS
T ss_pred             EEEEEEEEECCCCCCCCCCCcEEEEEECCcccCCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccc
Confidence            89999999999999999999999999999999999999999997532     1268899999999887544111    24


Q ss_pred             cceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccccccc
Q psy15063        252 TLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGE  330 (417)
Q Consensus       252 ~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~  330 (417)
                      .|+++.++++++++|+..+...+.+.||||+... +.++|+|                                      
T Consensus       148 ~L~~~~~~i~~~~~C~~~~~~~~~~~~~Cag~~~~~~~~C~G--------------------------------------  189 (250)
T 1aut_C          148 VLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEG--------------------------------------  189 (250)
T ss_dssp             BCEEEEEEEECHHHHHHHCSSCCCTTEEEECCTTCCCBCCTT--------------------------------------
T ss_pred             eeeEEEEEEecHHHhhHHhccCCCCCEEEeCCCCCCCCCCCC--------------------------------------
Confidence            7999999999999999988777899999999765 6899999                                      


Q ss_pred             CCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHh
Q psy15063        331 FPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       331 ~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                      ||||||++..+++|+|+||+||| .+|+ ..+.|+|||||+.|++||+
T Consensus       190 --------------------------------DSGGPL~~~~~g~~~l~GI~S~g-~~C~-~~~~p~vyt~V~~y~~WI~  235 (250)
T 1aut_C          190 --------------------------------DSGGPMVASFHGTWFLVGLVSWG-EGCG-LLHNYGVYTKVSRYLDWIH  235 (250)
T ss_dssp             --------------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEECGGGTHHHHH
T ss_pred             --------------------------------CCchheEEEECCeEEEEEEEEEC-CCCC-CCCCCEEEEEHHHHHHHHH
Confidence                                            99999999889999999999999 8998 6789999999999999999


Q ss_pred             hhhcc
Q psy15063        411 VNAIV  415 (417)
Q Consensus       411 ~~~~~  415 (417)
                      +++..
T Consensus       236 ~~~~~  240 (250)
T 1aut_C          236 GHIRD  240 (250)
T ss_dssp             HHHC-
T ss_pred             HHhhc
Confidence            98864

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=1.2e-48  Score=378.41  Aligned_cols=236  Identities=22%  Similarity=0.416  Sum_probs=197.2

Q ss_pred             eeEecCCCCCCCCCCCCCcceeeEc-----cccceEEEeeCCeEEeeccceeeecCCC--CCCCccceEEEeceecCCCC
Q psy15063        102 TYFKSPHHPARPSSGLTCDYDVAIR-----QDVCAVRIEFEKVNLARKVGGVCDIDQL--RDTPVSELVLHLGDHDLTQL  174 (417)
Q Consensus       102 ~~~~~~g~~a~~~~~~~~PW~v~i~-----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~--~~~~~~~~~V~lG~~~~~~~  174 (417)
                      ..+|++|.+|.++   +|||+|+|.     .++|+||||+++|||||   |||+....  .......+.|++|.+++...
T Consensus        28 ~~rIvgG~~a~~~---~~Pw~v~l~~~~~~~~~CgGsLIs~~~VLTA---AHC~~~~~~~~~~~~~~~~V~~G~~~~~~~  101 (289)
T 2bdy_A           28 DGRIVEGSDAEIG---MSPWQVMLFRKSPQELLCGASLISDRWVLTA---AHCLLYPPWDKNFTENDLLVRIGKHSRTRY  101 (289)
T ss_dssp             ---CBSCEECCTT---SCTTEEEEEETTTTEEEEEEEECSSSEEEEC---GGGTEEGGGTEECCGGGEEEEESCCBSSSC
T ss_pred             CCeEECCEECCCC---CCCCeEEEEECCCCCEEEEEEEecCCEEEEc---HHhcccCccccccCcccEEEEEcccccccc
Confidence            3589999999988   499999994     35899999999999999   99995421  11234678999999987654


Q ss_pred             CCCCcEEEeeeEEEeCCCCCC-CCCCCCeEEEEecCCcCCCCceeeeeCCCCCCc---c-CCCeEEEEEcCccCCCCC--
Q psy15063        175 NETSHVRRGVRRVLFHSHFHP-FVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES---F-IGKRGHVVGWGVTSFPMG--  247 (417)
Q Consensus       175 ~~~~~q~~~V~~i~iHP~Y~~-~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~---~-~~~~~~v~GWG~~~~~~~--  247 (417)
                      +....+.+.|.++++||+|+. .++.||||||||++|+.|+++|+|||||.....   . .+..++++|||.+.....  
T Consensus       102 ~~~~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~~  181 (289)
T 2bdy_A          102 ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTAN  181 (289)
T ss_dssp             CTTTCEEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC----
T ss_pred             CCCcceeeeeEEEEECCCCCCCCCCCCeEEEEEECCccccCCcccccCCCCccccccccCCCCEEEEECCCcCCCccccC
Confidence            432457788999999999984 577899999999999999999999999976431   1 688999999999875421  


Q ss_pred             --CC-CccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC----CCCCccCCCCCcccccccccccccCccccCCccee
Q psy15063        248 --EP-SPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE----TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRI  320 (417)
Q Consensus       248 --~~-~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~----~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~  320 (417)
                        .. +..|+++.++++++..|+..+...+++.||||+...    +.++|+|                            
T Consensus       182 ~~~~~~~~L~~~~v~i~~~~~C~~~~~~~i~~~~iCag~~~~~~~~~~~C~G----------------------------  233 (289)
T 2bdy_A          182 VGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEG----------------------------  233 (289)
T ss_dssp             ---CCCSBCEEEEEEBCCHHHHHHTCSSCCCTTEEEECCCGGGCCCCBCCTT----------------------------
T ss_pred             ccccccccceEEEEEEECHHHhhccccCcCCCCEEeccCCCCCCCCCccCCC----------------------------
Confidence              12 678999999999999999988667899999998642    6789999                            


Q ss_pred             ecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCCCeE
Q psy15063        321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDL  398 (417)
Q Consensus       321 ~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~p~v  398 (417)
                                                                ||||||++..  +++|+|+||+||| .+|+ .++.|+|
T Consensus       234 ------------------------------------------DSGGPLv~~~~~~~~~~l~GIvS~g-~~C~-~~~~p~v  269 (289)
T 2bdy_A          234 ------------------------------------------DSGGPFVMKSPFNNRWYQMGIVSWG-EGCD-RDGKYGF  269 (289)
T ss_dssp             ------------------------------------------CTTCEEEEECTTTCCEEEEEEEEEC-SSSS-CTTCCEE
T ss_pred             ------------------------------------------CCccceEEEECCCCCEEEEEEEEEC-CCCC-CCCCCEE
Confidence                                                      9999999987  7899999999999 8999 7789999


Q ss_pred             EEecccchhHHhhhhcc
Q psy15063        399 YTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       399 yt~Vs~~~~WI~~~~~~  415 (417)
                      ||||+.|++||++++..
T Consensus       270 yt~V~~y~~WI~~~i~~  286 (289)
T 2bdy_A          270 YTHVFRLKKWIQKVIDQ  286 (289)
T ss_dssp             EEETGGGHHHHHHHHHC
T ss_pred             EEEHHHHHHHHHHHHHh
Confidence            99999999999998864

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=8.1e-48  Score=371.51  Aligned_cols=244  Identities=25%  Similarity=0.473  Sum_probs=206.1

Q ss_pred             CCCCccccccc--eeEecCCCCCCCCCCCCCcceeeEc--cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEe
Q psy15063         91 YSCGDVSKERV--TYFKSPHHPARPSSGLTCDYDVAIR--QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHL  166 (417)
Q Consensus        91 ~~CG~~~~~~~--~~~~~~g~~a~~~~~~~~PW~v~i~--~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~l  166 (417)
                      ..||.....+.  ..+|++|.+|.++   +|||+|+|.  .++|+||||+++|||||   |||+.+..   ....+.|++
T Consensus        20 ~~CG~~~~~~~~~~~rIvgG~~a~~~---~~Pw~v~l~~~~~~CgGsLIs~~~VLTA---AHC~~~~~---~~~~~~V~~   90 (283)
T 1yc0_A           20 QACGRRHKKRTFLRPRIIGGSSSLPG---SHPWLAAIYIGDSFCAGSLVHTCWVVSA---AHCFSHSP---PRDSVSVVL   90 (283)
T ss_dssp             -CCSCCSCC-------CBSCEECCTT---SSTTEEEEEETTEEEEEEEEETTEEEEC---GGGGTTCC---CGGGEEEEE
T ss_pred             CCcCCcccccccCcCceECCeECCCC---CCCeEEEEEcCCcEEEEEEeeCCEEEEC---HHHcCCCC---CCceEEEEE
Confidence            46995443332  2489999999988   499999995  46999999999999999   99996531   246799999


Q ss_pred             ceecCCCCCCCCcEEEeeeEEEeCCCCCC-CCCCCCeEEEEecCC----cCCCCceeeeeCCCCCCcc-CCCeEEEEEcC
Q psy15063        167 GDHDLTQLNETSHVRRGVRRVLFHSHFHP-FVLSNDIALLQLDRP----VPLTGTIQPVCLPQKGESF-IGKRGHVVGWG  240 (417)
Q Consensus       167 G~~~~~~~~~~~~q~~~V~~i~iHP~Y~~-~~~~nDIALLkL~~p----v~~s~~v~PicLp~~~~~~-~~~~~~v~GWG  240 (417)
                      |.+++..... ..+.+.|.++++||+|+. ....||||||||++|    +.|+++|+|||||...... .+..++++|||
T Consensus        91 G~~~~~~~~~-~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG  169 (283)
T 1yc0_A           91 GQHFFNRTTD-VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWG  169 (283)
T ss_dssp             SCCBTTCCCS-SCEEECEEEEEECTTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESS
T ss_pred             eeeecccCCC-ceEEEeeEEEEecCccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeC
Confidence            9998876554 678899999999999998 778999999999999    8999999999999876544 78999999999


Q ss_pred             ccCCCCCCCCccceEEEEEEeChhhhhhh--hhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCc
Q psy15063        241 VTSFPMGEPSPTLQKLEVKVLSNARCSTV--IEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPR  317 (417)
Q Consensus       241 ~~~~~~~~~~~~L~~~~v~i~~~~~C~~~--~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~  317 (417)
                      .+.......+..|+++.++++++.+|+..  +...+++.||||+... +.++|+|                         
T Consensus       170 ~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~iCa~~~~~~~~~C~G-------------------------  224 (283)
T 1yc0_A          170 HLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG-------------------------  224 (283)
T ss_dssp             CSBTTBCSCCSBCEEEEEEBCCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTT-------------------------
T ss_pred             ccCCCCCccCchheEeEEEEECHHHhcCccccCCcCCCCEEeeCCCCCCCccCCC-------------------------
Confidence            98865534688999999999999999874  3346889999999765 7899999                         


Q ss_pred             ceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCe
Q psy15063        318 RRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPD  397 (417)
Q Consensus       318 ~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~  397 (417)
                                                                   ||||||++..+++|+|+||+||| .+|+ ..+.|+
T Consensus       225 ---------------------------------------------DSGgPL~~~~~g~~~l~GIvS~g-~~C~-~~~~p~  257 (283)
T 1yc0_A          225 ---------------------------------------------DSGGPLACEKNGVAYLYGIISWG-DGCG-RLHKPG  257 (283)
T ss_dssp             ---------------------------------------------CTTCEEEEEETTEEEEEEEEEEC-STTT-CTTCCE
T ss_pred             ---------------------------------------------CCCCceEEEECCcEEEEEEEEEC-CCCC-CCCCCe
Confidence                                                         99999999989999999999999 7998 678999


Q ss_pred             EEEecccchhHHhhhhccC
Q psy15063        398 LYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       398 vyt~Vs~~~~WI~~~~~~~  416 (417)
                      |||||+.|++||++++...
T Consensus       258 vyt~V~~y~~WI~~~i~~~  276 (283)
T 1yc0_A          258 VYTRVANYVDWINDRIRPP  276 (283)
T ss_dssp             EEEEGGGGHHHHHHHCC--
T ss_pred             EEEEhhhHHHHHHHHhcCC
Confidence            9999999999999998753

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=5e-48  Score=363.06  Aligned_cols=227  Identities=24%  Similarity=0.490  Sum_probs=200.5

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCc
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSH  179 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~  179 (417)
                      |++|.++.++   +|||+|+|.     .++|+||||+++|||||   |||+.+.    .+..+.|++|.+++..... ..
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~CgGtLIs~~~VLTA---AHC~~~~----~~~~~~v~~G~~~~~~~~~-~~   69 (238)
T 1ym0_A            1 IVGGIEARPY---EFPWQVSVRRKSSDSHFCGGSIINDRWVVCA---AHCMQGE----APALVSLVVGEHDSSAAST-VR   69 (238)
T ss_dssp             CBSCEECCTT---SSTTEEEEEEGGGTEEEEEEEEEETTEEEEC---HHHHTTC----CGGGEEEEESCSBTTSCCS-SC
T ss_pred             CCCCEECCCC---ccCCEEEEEeCCCCceEEEEEEeeCCEEEEC---HHhCCCC----CCceEEEEEcccccCCCCC-Cc
Confidence            5678888877   599999995     46899999999999999   9999654    4477999999998876554 56


Q ss_pred             EEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        180 VRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       180 q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      +.+.|.++++||+|+.....||||||||++|+.|+++++|||||.....+.+..++++|||.+.......+..|+++.++
T Consensus        70 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~  149 (238)
T 1ym0_A           70 QTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLN  149 (238)
T ss_dssp             EEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTCCCTTCEEEEEESCCSSTTCCSCCSBCEEEEEE
T ss_pred             eEEEEEEEEECCCCCCCCCcccEEEEEeCCCccccCcccccCCCCCcCCCCCCceEEEeecCCCCCCCcCCccceEEEEE
Confidence            88999999999999999999999999999999999999999999876544789999999999886552337899999999


Q ss_pred             EeChhhhhhhhhc-cCCCCeEEecCCC-C--CCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        260 VLSNARCSTVIEE-SIGIGMLCAAPDE-T--QGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       260 i~~~~~C~~~~~~-~~~~~~iCa~~~~-~--~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      +++..+|+..+.. .+.+.||||+... +  .++|+|                                           
T Consensus       150 ~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~~~C~G-------------------------------------------  186 (238)
T 1ym0_A          150 ITTNAFCDAVYTSDTIYDDMICATDNTGMTDRDSCQG-------------------------------------------  186 (238)
T ss_dssp             ECCHHHHHHHCTTSCCCTTEEEEECSSCSSSCBCCTT-------------------------------------------
T ss_pred             eeCHHHHhHhhcccccCCCeEEecCCCCCCcCccCCC-------------------------------------------
Confidence            9999999988765 6889999998765 3  799999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                 ||||||++.. +++|+|+||+||| .+|+  .+.|+|||||+.|++||+++|.
T Consensus       187 ---------------------------DsGgPL~~~~~~~~~~l~Gi~S~g-~~C~--~~~p~vyt~v~~~~~WI~~~i~  236 (238)
T 1ym0_A          187 ---------------------------DSGGPLSVKDGSGIFSLVGIVSWG-IGCA--SGYPGVYSRVGFHAGWITDTIT  236 (238)
T ss_dssp             ---------------------------TTTCEEEEECTTCCEEEEEEEEEC-SSSS--SSSCEEEEEHHHHHHHHHHHHH
T ss_pred             ---------------------------ccCCeeEEECCCCCEEEEEEEeEC-CCCC--CCCCcEEEEHHHhHHHHHHHhc
Confidence                                       9999999987 7899999999999 8998  7899999999999999999886


Q ss_pred             c
Q psy15063        415 V  415 (417)
Q Consensus       415 ~  415 (417)
                      .
T Consensus       237 ~  237 (238)
T 1ym0_A          237 N  237 (238)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=4.2e-48  Score=364.59  Aligned_cols=225  Identities=26%  Similarity=0.439  Sum_probs=198.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      |++|.++.++   +|||+|+|.    .++|+||||+++|||||   |||+...      ..+.|++|.++...... ..+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTA---AhC~~~~------~~~~V~~G~~~~~~~~~-~~~   67 (241)
T 2jkh_A            1 IVGGQECKDG---ECPWQALLINEENEGFCGGTILSEFYILTA---AHCLYQA------KRFKVRVGDRNTEQEEG-GEA   67 (241)
T ss_dssp             CBSSEECCTT---SSTTEEEEECTTSCEEEEEEECSSSEEEEC---GGGGGSC------SSCEEEESCSBTTCCCS-CCE
T ss_pred             CCCCEECCCC---CcCcEEEEEcCCCCcEEEEEEeeCCEEEEc---HHHcCCC------CcEEEEECCccCCCCCC-CcE
Confidence            5788888888   499999995    35899999999999999   9999653      46899999998765544 568


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCc---c-CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES---F-IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~---~-~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      .+.|.++++||+|+..+..||||||||++|+.|+++++|||||.....   . .+..++++|||.+.... ..+..|+++
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~  146 (241)
T 2jkh_A           68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKG-EQSTRLKML  146 (241)
T ss_dssp             EECEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTS-CBCSBCEEE
T ss_pred             EEEeEEEEeCCCCCCCCCCCcEEEEEECCcccCCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCC-CcCccccEe
Confidence            889999999999999889999999999999999999999999975421   2 68899999999987654 567889999


Q ss_pred             EEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        257 EVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      .+++++...|+..+...+++.||||+... +.++|+|                                           
T Consensus       147 ~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  183 (241)
T 2jkh_A          147 EVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQG-------------------------------------------  183 (241)
T ss_dssp             EEEEECHHHHHHHCSSCCCTTEEEESCSSSSCBCCTT-------------------------------------------
T ss_pred             eeccccHHHhcccccCcCCCCeEEeeCCCCCCccCcC-------------------------------------------
Confidence            99999999999887667899999999765 6899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                 ||||||++..+++|+|+||+||| .+|+ ..+.|+|||||+.|++||++++..
T Consensus       184 ---------------------------DsGgPl~~~~~~~~~l~GI~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~~~~~  234 (241)
T 2jkh_A          184 ---------------------------DSGGPHVTRFKDTYFVTGIVSWG-EGCA-RKGKYGIYTKVTAFLKWIDRSMKT  234 (241)
T ss_dssp             ---------------------------TTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHHHTC-
T ss_pred             ---------------------------cCCCeeEEEECCEEEEEEEEEEC-CCCC-CCCCceEEEEhHHHHHHHHHHhcc
Confidence                                       99999999889999999999999 7898 678999999999999999999864

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=9e-48  Score=372.71  Aligned_cols=230  Identities=26%  Similarity=0.410  Sum_probs=197.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLN  175 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~  175 (417)
                      |++|.+|.++   +|||+|+|.         .++|+||||+++|||||   |||+....   ....+.|++|.+++....
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~~~CgGsLIs~~~VLTA---AHC~~~~~---~~~~~~v~~G~~~~~~~~   71 (290)
T 1fiw_A            1 IIGGQDAAHG---AWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTA---AHCFRIKK---KVTDWRLIFGAKEVEWGT   71 (290)
T ss_dssp             CBSCEECCTT---SSTTEEEEEEEETTTTEEEEEEEEEEEETTEEEEC---GGGGSSCC---SGGGEEEEESCSBCCTTC
T ss_pred             CCCCEECCCC---CCCcEEEEEEeccCCCccceEEEEEEeeCCEEEEC---HHhCCCCC---CCcceEEEecceEEeccC
Confidence            5788899888   499999984         35899999999999999   99996532   236789999998865322


Q ss_pred             C----CCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc--CCCeEEEEEcCccCCCCCCC
Q psy15063        176 E----TSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF--IGKRGHVVGWGVTSFPMGEP  249 (417)
Q Consensus       176 ~----~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~--~~~~~~v~GWG~~~~~~~~~  249 (417)
                      .    ...+.+.|+++++||+|+..+..||||||||++|+.|+++|+|||||......  .+..|+++|||.+.......
T Consensus        72 ~~~~~~~~~~~~V~~i~~Hp~y~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~  151 (290)
T 1fiw_A           72 NKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRT  151 (290)
T ss_dssp             CSCCCTTCEEEEEEEEEECTTCBTTTTBTCCEEEEEESCCCCBTTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSC
T ss_pred             CCcCCCCceEEEEEEEEECCCCCCCCCCCCEEEEEECCccccCCccccccCCCccccCcCCCCeEEEEEeccCCCCCCCC
Confidence            1    24688899999999999999999999999999999999999999999765432  58899999999987655345


Q ss_pred             CccceEEEEEEeChhhhhhh--hhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccc
Q psy15063        250 SPTLQKLEVKVLSNARCSTV--IEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEA  326 (417)
Q Consensus       250 ~~~L~~~~v~i~~~~~C~~~--~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~  326 (417)
                      +..|+++.+++++.++|+..  +...+.+.||||+... +.++|+|                                  
T Consensus       152 ~~~L~~~~v~i~~~~~C~~~~~~~~~i~~~~iCag~~~~~~~~C~G----------------------------------  197 (290)
T 1fiw_A          152 SPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQG----------------------------------  197 (290)
T ss_dssp             CSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTT----------------------------------
T ss_pred             CceeeEEEEEEecHHHhccccccCCcCCCCEEEEecCCCCCeeCCC----------------------------------
Confidence            77899999999999999875  3336889999999765 6799999                                  


Q ss_pred             ccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCCCeEEEeccc
Q psy15063        327 DIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSE  404 (417)
Q Consensus       327 ~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~  404 (417)
                                                          ||||||++..  +++|+|+||+||| .+|+ ..+.|+|||||+.
T Consensus       198 ------------------------------------DSGGPLv~~~~~~~~~~l~GIvS~g-~~C~-~~~~p~vyt~V~~  239 (290)
T 1fiw_A          198 ------------------------------------DSGGPLMCKDSAENSYVVVGITSWG-VGCA-RAKRPGVYTSTWS  239 (290)
T ss_dssp             ------------------------------------CTTCEEEEECSSSSCEEEEEEEEEC-SSSS-BTTBCEEEEESGG
T ss_pred             ------------------------------------CCchheEEEECCCCCEEEEEEEEEC-CCCC-CCCCCeEEEEHHH
Confidence                                                9999999986  6899999999999 8998 7789999999999


Q ss_pred             chhHHhhhhcc
Q psy15063        405 YIRWIHVNAIV  415 (417)
Q Consensus       405 ~~~WI~~~~~~  415 (417)
                      |++||+++++.
T Consensus       240 y~~WI~~~~~~  250 (290)
T 1fiw_A          240 YLNWIASKIGS  250 (290)
T ss_dssp             GHHHHHHHHCH
T ss_pred             hHHHHHHHhCc
Confidence            99999998864

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=1.3e-47  Score=362.03  Aligned_cols=230  Identities=23%  Similarity=0.413  Sum_probs=202.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCC----------CCccceEEEeceec
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRD----------TPVSELVLHLGDHD  170 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~----------~~~~~~~V~lG~~~  170 (417)
                      |++|.+|.++   +|||+|+|..    ++|+||||+++|||||   |||+.+....          ..+..+.|++|.++
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTA---AHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~   74 (251)
T 3gov_B            1 IFNGRPAQKG---TTPWIAMLSHLNGQPFCGGSLLGSSWIVTA---AHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHW   74 (251)
T ss_dssp             CBTCEECCTT---SCTTEEEEEETTCCEEEEEEEETTTEEEEC---GGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCB
T ss_pred             CCCCEECCCC---CcCeEEEEeccCCCeeEEEEEecCCEEEEC---HhhccccccccccccccccccccccEEEEeccee
Confidence            5788888888   4999999953    4899999999999999   9999653211          24578999999998


Q ss_pred             CCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCC
Q psy15063        171 LTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPS  250 (417)
Q Consensus       171 ~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~  250 (417)
                      ...... ..+.+.|.++++||+|+..+..||||||||++|+.|+++++|||||..... .+..++++|||.+....  .+
T Consensus        75 ~~~~~~-~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~~-~~~~~~v~GwG~~~~~~--~~  150 (251)
T 3gov_B           75 RLRSDE-NEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQ-EGAMVIVSGWGKQFLQR--FP  150 (251)
T ss_dssp             SSSCCS-SCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCCC-TTCEEEEEECSCCTTSC--CC
T ss_pred             ccCCCC-cceEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCCCCC-CCCEEEEEcCCCCCCCC--CC
Confidence            865554 678899999999999999999999999999999999999999999987764 79999999999987643  78


Q ss_pred             ccceEEEEEEeChhhhhhhhhc---cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccc
Q psy15063        251 PTLQKLEVKVLSNARCSTVIEE---SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEA  326 (417)
Q Consensus       251 ~~L~~~~v~i~~~~~C~~~~~~---~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~  326 (417)
                      ..|+++.+++++.++|+..+..   .+++.||||+... +.++|+|                                  
T Consensus       151 ~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G----------------------------------  196 (251)
T 3gov_B          151 ETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAG----------------------------------  196 (251)
T ss_dssp             SBCEEEEEEEECHHHHHHHTTTTTCCCCTTEEEESCTTCCCBCCTT----------------------------------
T ss_pred             ccceEEeeEEECHHHhhhhhhhccCCCCCCcEEecCCCCCCccCCC----------------------------------
Confidence            8999999999999999998864   6889999999876 6899999                                  


Q ss_pred             ccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEe--eCCeEEEEeEEEEcCCCccccCCCCeEEEeccc
Q psy15063        327 DIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFE--QDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSE  404 (417)
Q Consensus       327 ~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~--~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~  404 (417)
                                                          ||||||++.  .+++|+|+||+||| .+|+ ..+.|+|||||+.
T Consensus       197 ------------------------------------DsGgPl~~~~~~~~~~~l~Gi~S~g-~~C~-~~~~p~vyt~V~~  238 (251)
T 3gov_B          197 ------------------------------------DSGGPMVTLNRERGQWYLVGTVSWG-DDCG-KKDRYGVYSYIHH  238 (251)
T ss_dssp             ------------------------------------CTTCEEEEECTTTCCEEEEEEEEEC-SSSS-CSSCCEEEEETTT
T ss_pred             ------------------------------------CCCCeEEeeeCCCCcEEEEEEEEEC-CCCC-CCCCCEEEEEHHH
Confidence                                                999999997  47899999999999 8999 7788999999999


Q ss_pred             chhHHhhhhccC
Q psy15063        405 YIRWIHVNAIVT  416 (417)
Q Consensus       405 ~~~WI~~~~~~~  416 (417)
                      |++||++++++.
T Consensus       239 ~~~WI~~~~~~~  250 (251)
T 3gov_B          239 NKDWIQRVTGVR  250 (251)
T ss_dssp             THHHHHHHHCCC
T ss_pred             hHHHHHHHhccc
Confidence            999999999863

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=1.1e-47  Score=363.66  Aligned_cols=228  Identities=26%  Similarity=0.406  Sum_probs=198.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLN  175 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~  175 (417)
                      |++|.+|.++   +|||+|+|.         .++|+||||+++|||||   |||+.+..   .+..+.|++|.++.....
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~~~CgGtLI~~~~VLTA---AHC~~~~~---~~~~~~V~~G~~~~~~~~   71 (252)
T 1rtf_B            1 IKGGLFADIA---SHPWQAAIFAKHRRSPGERFLCGGILISSCWILSA---AHCFQERF---PPHHLTVILGRTYRVVPG   71 (252)
T ss_dssp             CBSSEECCGG---GSTTEEEEEEEC----CEEEEEEEEECSSSEEEEC---GGGGTTCC---CGGGEEEEESCSBSSSCC
T ss_pred             CCCCeECCCC---CcCCEEEEEEecCCCCCCCEEEEEEEEeCCEEEEC---HHHCCCCC---CcccEEEEeCcccccCCC
Confidence            5678888777   599999995         35899999999999999   99996531   346799999998876554


Q ss_pred             CCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCC----cCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCC
Q psy15063        176 ETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP----VPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPS  250 (417)
Q Consensus       176 ~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~p----v~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~  250 (417)
                      . ..+.+.|.++++||+|+..+..||||||||++|    +.|+++++|||||...... .+..++++|||.+.......+
T Consensus        72 ~-~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~  150 (252)
T 1rtf_B           72 E-EEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYS  150 (252)
T ss_dssp             T-TCEEEEEEEEEECTTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCC
T ss_pred             C-cceEEEEEEEEeCCCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCcccc
Confidence            4 568899999999999999999999999999999    8999999999999876544 688999999999876543467


Q ss_pred             ccceEEEEEEeChhhhhhhhh--ccCCCCeEEecCCC-C------CCCccCCCCCcccccccccccccCccccCCcceee
Q psy15063        251 PTLQKLEVKVLSNARCSTVIE--ESIGIGMLCAAPDE-T------QGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRII  321 (417)
Q Consensus       251 ~~L~~~~v~i~~~~~C~~~~~--~~~~~~~iCa~~~~-~------~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~  321 (417)
                      ..|+++.+++++.++|+..+.  ..+.+.||||+... +      .++|+|                             
T Consensus       151 ~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~G-----------------------------  201 (252)
T 1rtf_B          151 ERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQG-----------------------------  201 (252)
T ss_dssp             SBCEEEEEEECCGGGSSTTTTTTCCCCTTEEEEECCC------CCCBCCTT-----------------------------
T ss_pred             chheEeeeEEecHHHhhhhhccCCCCCCCEEEecCCCCCCccCCCCccccC-----------------------------
Confidence            899999999999999998653  26789999998765 3      789999                             


Q ss_pred             cccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEe
Q psy15063        322 LGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTR  401 (417)
Q Consensus       322 ~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~  401 (417)
                                                               ||||||++..+++|+|+||+||| .+|+ ..+.|+||||
T Consensus       202 -----------------------------------------DsGgPL~~~~~~~~~l~Gi~S~g-~~C~-~~~~p~vyt~  238 (252)
T 1rtf_B          202 -----------------------------------------DSGGPLVCLNDGRMTLVGIISWG-LGCG-QKDVPGVYTK  238 (252)
T ss_dssp             -----------------------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEE
T ss_pred             -----------------------------------------CCcCceEEEeCCcEEEEEEEEEc-CCCC-CCCCCeEEEE
Confidence                                                     99999999989999999999999 7998 6788999999


Q ss_pred             cccchhHHhhhhc
Q psy15063        402 VSEYIRWIHVNAI  414 (417)
Q Consensus       402 Vs~~~~WI~~~~~  414 (417)
                      |+.|++||+++|.
T Consensus       239 V~~y~~WI~~~~~  251 (252)
T 1rtf_B          239 VTNYLDWIRDNMR  251 (252)
T ss_dssp             GGGGHHHHHHHCC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999875

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=6.3e-48  Score=388.71  Aligned_cols=246  Identities=25%  Similarity=0.463  Sum_probs=208.0

Q ss_pred             cCCCCccccccceeEecCC-CCCCCCCCCCCcceeeEc-----------cccceEEEeeCCeEEeeccceeeecCCCCCC
Q psy15063         90 TYSCGDVSKERVTYFKSPH-HPARPSSGLTCDYDVAIR-----------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDT  157 (417)
Q Consensus        90 ~~~CG~~~~~~~~~~~~~g-~~a~~~~~~~~PW~v~i~-----------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~  157 (417)
                      ...||.........+|++| .+|.++   +|||+|+|.           .++|+||||+++|||||   |||+.+...  
T Consensus       115 ~~~CG~~~~~~~~~rIvgG~~~a~~~---e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTA---AHCv~~~~~--  186 (394)
T 2b9l_A          115 PSFCGIRNERGLDFKITGQTNEAEYG---EFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTG---AHCVNSYQS--  186 (394)
T ss_dssp             CCCTTBCCTTCSSCEEESCSSBCCTT---SSTTEEEEEECC------CCSEEEEEEEEETTEEEEC---HHHHGGGTT--
T ss_pred             CCCCCCCCCCCCCceeeCCccccCCC---CCCcEEEEeeccccccccccceEeeEEEEeCCEEEec---cceecCCCC--
Confidence            3579944433345689999 788888   599999984           35899999999999999   999965321  


Q ss_pred             CccceEEEeceecCCCCCC-CCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEE
Q psy15063        158 PVSELVLHLGDHDLTQLNE-TSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHV  236 (417)
Q Consensus       158 ~~~~~~V~lG~~~~~~~~~-~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v  236 (417)
                      ....+.|++|.+++....+ ...+.+.|+++++||+|+..+..||||||||++|+.|+++|+|||||.....+.+..+++
T Consensus       187 ~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~~~~~~~~v  266 (394)
T 2b9l_A          187 NLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFA  266 (394)
T ss_dssp             CGGGEEEEESCCBTTCCCSSSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCCCCCSCEEE
T ss_pred             CcccEEEEeceeeccCCcCCCccEEEEEEEEEECCCCCCCccccceEEEEecCccccCCceeeeEcCCcccCccCCEEEE
Confidence            2367999999998765432 145889999999999999989999999999999999999999999998765556789999


Q ss_pred             EEcCccCCCC-CCCCccceEEEEEEeChhhhhhhhhc-------cCCCCeEEecCCCCCCCccCCCCCcccccccccccc
Q psy15063        237 VGWGVTSFPM-GEPSPTLQKLEVKVLSNARCSTVIEE-------SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFH  308 (417)
Q Consensus       237 ~GWG~~~~~~-~~~~~~L~~~~v~i~~~~~C~~~~~~-------~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi  308 (417)
                      +|||.+..+. ...+..|+++.++++++++|+..+..       .+.+.||||+...++++|+|                
T Consensus       267 ~GWG~t~~~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~~g~d~C~G----------------  330 (394)
T 2b9l_A          267 SGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGKDTCTG----------------  330 (394)
T ss_dssp             EECCTTTTTCTTSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCBSSCSCCSS----------------
T ss_pred             EeccCccCCCCCcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCCCCCcCCCC----------------
Confidence            9999987543 23578999999999999999987753       47889999997778899999                


Q ss_pred             cCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee---CCeEEEEeEEEEc
Q psy15063        309 QGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ---DGYHVLAGIVSYG  385 (417)
Q Consensus       309 ~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~---~g~~~l~GI~S~g  385 (417)
                                                                            ||||||++..   +++|+|+||+|||
T Consensus       331 ------------------------------------------------------DSGGPLv~~~~~~~~~~~lvGIvS~G  356 (394)
T 2b9l_A          331 ------------------------------------------------------DGGSPLFCPDPRNPSRYMQMGIVAWG  356 (394)
T ss_dssp             ------------------------------------------------------CTTCEEEEEETTEEEEEEEEEEESCT
T ss_pred             ------------------------------------------------------CcchhhEEEEcCCCCeEEEEEEEEEC
Confidence                                                                  9999999963   5789999999999


Q ss_pred             CCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        386 VTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       386 ~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                       .+|+ ..+.|+|||||+.|++||+++|..
T Consensus       357 -~~C~-~~~~PgVYT~V~~y~~WI~~~i~~  384 (394)
T 2b9l_A          357 -IGCG-DENVPGVYANVAHFRNWIDQEMQA  384 (394)
T ss_dssp             -TCCC-BSSSCEEEEEGGGGHHHHHHHHHH
T ss_pred             -CCCC-CCCCCeEEEEHHHhHHHHHHHHHh
Confidence             7998 778999999999999999998863

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=2e-47  Score=361.35  Aligned_cols=230  Identities=25%  Similarity=0.476  Sum_probs=200.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc--cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR--QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~--~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.+|.++   +|||+|+|.  .++|+||||+++|||||   |||+.+..   ....+.|++|.+++..... ..+.+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~CgGsLIs~~~VLTA---AHC~~~~~---~~~~~~V~~G~~~~~~~~~-~~~~~   70 (248)
T 2r0l_A            1 IIGGSSSLPG---SHPWLAAIYIGDSFCAGSLVHTCWVVSA---AHCFSHSP---PRDSVSVVLGQHFFNRTTD-VTQTF   70 (248)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEETTEEEEC---GGGGTTCC---CGGGEEEEESCCBTTCCCS-SCEEE
T ss_pred             CCCCccCCCC---CCCeEEEEEcCCceEEEEEEcCCEEEEC---HHHcCCCC---CcCcEEEEEEeEEcCCCCC-ccEEE
Confidence            5688888887   599999995  46999999999999999   99996531   2367999999998876554 57889


Q ss_pred             eeeEEEeCCCCCC-CCCCCCeEEEEecCC----cCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        183 GVRRVLFHSHFHP-FVLSNDIALLQLDRP----VPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       183 ~V~~i~iHP~Y~~-~~~~nDIALLkL~~p----v~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      .|.++++||+|+. ....||||||||++|    +.|+++++|||||...... .+..++++|||.+.......+..|+++
T Consensus        71 ~v~~i~~hp~y~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~  150 (248)
T 2r0l_A           71 GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREA  150 (248)
T ss_dssp             CEEEEEECTTCCTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEE
T ss_pred             eeeEEEeCCccCcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEE
Confidence            9999999999998 778999999999999    8999999999999876544 789999999999876553468899999


Q ss_pred             EEEEeChhhhhhh--hhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCc
Q psy15063        257 EVKVLSNARCSTV--IEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPW  333 (417)
Q Consensus       257 ~v~i~~~~~C~~~--~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~  333 (417)
                      .+++++..+|+..  +...+++.||||+... +.++|+|                                         
T Consensus       151 ~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-----------------------------------------  189 (248)
T 2r0l_A          151 LVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG-----------------------------------------  189 (248)
T ss_dssp             EEEBCCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTT-----------------------------------------
T ss_pred             EEeeeCHHHhCCccccCCcCCCCEEeECCCCCCCcCCCC-----------------------------------------
Confidence            9999999999875  3336889999999765 7899999                                         


Q ss_pred             EEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhh
Q psy15063        334 QVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       334 ~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                                                   ||||||++..+++|+|+||+||| .+|+ ..+.|+|||||+.|++||++++
T Consensus       190 -----------------------------DSGgPL~~~~~g~~~l~GI~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~~~  238 (248)
T 2r0l_A          190 -----------------------------DSGGPLACEKNGVAYLYGIISWG-DGCG-RLHKPGVYTRVANYVDWINDRI  238 (248)
T ss_dssp             -----------------------------CTTCEEEEEETTEEEEEEEEEEC-STTT-CTTCCEEEEEGGGGHHHHHHHH
T ss_pred             -----------------------------ccCCeEEEEECCcEEEEEEEEeC-CCCC-CCCCCcEEEEHHHHHHHHHHHh
Confidence                                         99999999989999999999999 7998 6789999999999999999998


Q ss_pred             ccC
Q psy15063        414 IVT  416 (417)
Q Consensus       414 ~~~  416 (417)
                      ...
T Consensus       239 ~~~  241 (248)
T 2r0l_A          239 RPP  241 (248)
T ss_dssp             C--
T ss_pred             cCC
Confidence            754

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=1.5e-47  Score=364.24  Aligned_cols=228  Identities=29%  Similarity=0.490  Sum_probs=201.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+..   ....+.|++|.+++..... ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLI~~~~VLTA---AhC~~~~~---~~~~~~v~~g~~~~~~~~~-~~~~   70 (261)
T 3gyl_B            1 ITGGSSAVAG---QWPWQVSITYEGVHVCGGSLVSEQWVLSA---AHCFPSEH---HKEAYEVKLGAHQLDSYSE-DAKV   70 (261)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEECSSSEEEEC---GGGSCTTS---CGGGEEEEESCSBTTSCCS-SCEE
T ss_pred             CCCCcCCCCC---CCCcEEEEeeCCceEEEEEEEcCCEEEEC---HHHCCCCC---CcccEEEEeCceeccCCCC-CceE
Confidence            5788888888   599999994   35899999999999999   99996422   3467899999998876655 6788


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCC-CCccceEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGE-PSPTLQKLEVK  259 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~-~~~~L~~~~v~  259 (417)
                      +.|.++++||+|+..+..||||||||++|+.|+++++|||||.....+ .+..|+++|||.+...... .+..|+++.++
T Consensus        71 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~  150 (261)
T 3gyl_B           71 STLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVP  150 (261)
T ss_dssp             ECEEEEEECTTCCSTTCSCCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEE
T ss_pred             EEEEEEEECCCcCCCCCCCcEEEEEECCCccCCCceeccCCCCcccCCCCCCEEEEEecCCCCCCCCccCCccceEEEEE
Confidence            899999999999999999999999999999999999999999876655 7899999999988765422 37889999999


Q ss_pred             EeChhhhhhhhh--------ccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccccccc
Q psy15063        260 VLSNARCSTVIE--------ESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGE  330 (417)
Q Consensus       260 i~~~~~C~~~~~--------~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~  330 (417)
                      +++...|+..+.        ..+.+.||||+... +.++|+|                                      
T Consensus       151 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G--------------------------------------  192 (261)
T 3gyl_B          151 LISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQG--------------------------------------  192 (261)
T ss_dssp             EECHHHHHHHHTTTCCTTCCCCCCTTEEEESCSSSSCBCCTT--------------------------------------
T ss_pred             EECHHHhhhhhcccccccccccccCCeEeeCCCCCCCccCCC--------------------------------------
Confidence            999999998875        25889999998755 7899999                                      


Q ss_pred             CCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHh
Q psy15063        331 FPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       331 ~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                      ||||||++..+++|+|+||+||| .+|+ ..+.|+|||||+.|++||+
T Consensus       193 --------------------------------DsGgPl~~~~~~~~~lvGI~S~g-~~c~-~~~~p~vyt~v~~~~~WI~  238 (261)
T 3gyl_B          193 --------------------------------DSGGPLSCPVEGLWYLTGIVSWG-DACG-ARNRPGVYTLASSYASWIQ  238 (261)
T ss_dssp             --------------------------------TTTCEEEEEETTEEEEEEEECCC-CCSS-CTTCCEEEEEGGGGHHHHH
T ss_pred             --------------------------------CCCCeeEEEeCCEEEEEEEEecC-CCCC-CCCCCCEEEEHHHhHHHHH
Confidence                                            99999999889999999999999 8998 6789999999999999999


Q ss_pred             hhhc
Q psy15063        411 VNAI  414 (417)
Q Consensus       411 ~~~~  414 (417)
                      +++.
T Consensus       239 ~~i~  242 (261)
T 3gyl_B          239 SKVT  242 (261)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9885

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=7.9e-48  Score=363.57  Aligned_cols=226  Identities=29%  Similarity=0.506  Sum_probs=195.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|+|..      ++|+||||+++|||||   |||+....  .....+.|++|.+++..    .
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTA---AHC~~~~~--~~~~~~~v~~g~~~~~~----~   68 (245)
T 2f9n_A            1 IVGGQEAPRS---KWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTA---AHCVGPDV--KDLATLRVQLREQHLYY----Q   68 (245)
T ss_dssp             CBSCEECCTT---SCTTEEEEEEESSSEEEEEEEEEEETTEEEEC---GGGGCSSC--CCGGGEEEECSCSBTTT----T
T ss_pred             CCCCeECCCC---CCCcEEEEEEcCCCcceEEEEEEeeCCEEEEC---HHhCCCCC--CCcceEEEEeCCccccc----C
Confidence            5788888887   5999999953      5899999999999999   99996432  23467899999988753    3


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCC-CCccceEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGE-PSPTLQKL  256 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~-~~~~L~~~  256 (417)
                      .+.+.|+++++||+|+..+..||||||||++|+.|+++++|||||.....+ .+..|+++|||.+...... .+..|+++
T Consensus        69 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~  148 (245)
T 2f9n_A           69 DQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQV  148 (245)
T ss_dssp             CCCBCEEEEEECTTCCSSCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCCEEEEESCCSBTTBCCCTTCBCEEE
T ss_pred             ceEEEEEEEEECCCccCCCCCCcEEEEEeCCCCcCCCCccccCCCCcccCCCCCCEEEEEEeCCCCCCCCCCccccceEE
Confidence            456789999999999998999999999999999999999999999876554 7899999999998754411 24589999


Q ss_pred             EEEEeChhhhhhhhhc---------cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccc
Q psy15063        257 EVKVLSNARCSTVIEE---------SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEAD  327 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~---------~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~  327 (417)
                      .++++++++|+..+..         .+.+.||||+. .+.++|+|                                   
T Consensus       149 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~Ca~~-~~~~~C~G-----------------------------------  192 (245)
T 2f9n_A          149 KVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGN-SQRDSCQG-----------------------------------  192 (245)
T ss_dssp             ECCEECHHHHHHHHHTTCCSCTTSCCSCTTEEEECC-SSSBCCTT-----------------------------------
T ss_pred             EEEEcCHHHhhhhhcccccccccccccccccEeecC-CCCCcCCC-----------------------------------
Confidence            9999999999988753         47889999984 37899999                                   


Q ss_pred             cccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchh
Q psy15063        328 IGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIR  407 (417)
Q Consensus       328 ~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~  407 (417)
                                                         ||||||++..+++|+|+||+||| .+|+ ..+.|+|||||+.|++
T Consensus       193 -----------------------------------DSGgPL~~~~~g~~~l~GI~S~g-~~C~-~~~~p~vyt~V~~y~~  235 (245)
T 2f9n_A          193 -----------------------------------DSGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLD  235 (245)
T ss_dssp             -----------------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-BTTBCEEEEEGGGGHH
T ss_pred             -----------------------------------CCCCceEEEECCEEEEEEEEEeC-CCCC-CCCCCeEEEEHHHHHH
Confidence                                               99999999989999999999999 7998 6789999999999999


Q ss_pred             HHhhhhcc
Q psy15063        408 WIHVNAIV  415 (417)
Q Consensus       408 WI~~~~~~  415 (417)
                      ||++++..
T Consensus       236 WI~~~~~~  243 (245)
T 2f9n_A          236 WIHHYVPK  243 (245)
T ss_dssp             HHHHHSCC
T ss_pred             HHHHHhhc
Confidence            99998864

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=1e-47  Score=364.79  Aligned_cols=229  Identities=28%  Similarity=0.448  Sum_probs=200.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+..   ....+.|++|.+++...+. ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AHC~~~~~---~~~~~~v~~G~~~~~~~~~-~~~~   70 (254)
T 2bz6_H            1 IVGGKVCPKG---ECPWQVLLLVNGAQLCGGTLINTIWVVSA---AHCFDKIK---NWRNLIAVLGEHDLSEHDG-DEQS   70 (254)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEECSSSEEEEC---GGGGTTCS---CGGGEEEEESCCBTTCCCS-CCEE
T ss_pred             CCCCEECCCC---CcCCEEEEEeCCCcEEEEEEecCCEEEEC---HHHcCCCC---CcceEEEEECCcccCCCCC-CcEE
Confidence            5788888888   599999995   46899999999999999   99996532   2356999999998876554 5688


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCc---c-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES---F-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~---~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      +.|.++++||+|+..+..||||||||++|+.|+++++|||||.....   + .+..++++|||.+.... ..+..|+++.
T Consensus        71 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~  149 (254)
T 2bz6_H           71 RRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRG-ATALELMVLN  149 (254)
T ss_dssp             EEEEEEEEETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTS-CBCSBCEEEE
T ss_pred             EEEEEEEECCCCCCCCCcCcEEEEEECCccccCCCccceECCCCccccccccCCCcEEEEeCcccCCCC-CCChhheeee
Confidence            99999999999999999999999999999999999999999976431   2 57899999999987654 5678899999


Q ss_pred             EEEeChhhhhhhhhc-----cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccC
Q psy15063        258 VKVLSNARCSTVIEE-----SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEF  331 (417)
Q Consensus       258 v~i~~~~~C~~~~~~-----~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~  331 (417)
                      +++++.++|...+..     .+++.||||+... +.++|+|                                       
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G---------------------------------------  190 (254)
T 2bz6_H          150 VPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKG---------------------------------------  190 (254)
T ss_dssp             EEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGG---------------------------------------
T ss_pred             eeeecHHHHhhhhhccccCCccCCCEEeecCCCCCCccccc---------------------------------------
Confidence            999999999987754     5789999999765 6899999                                       


Q ss_pred             CcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhh
Q psy15063        332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       332 p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                                                     ||||||++..+++|+|+||+||| .+|+ ..+.|+|||||+.|++||++
T Consensus       191 -------------------------------DSGgPl~~~~~g~~~l~GI~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~  237 (254)
T 2bz6_H          191 -------------------------------DSGGPHATHYRGTWYLTGIVSWG-QGCA-TVGHFGVYTRVSQYIEWLQK  237 (254)
T ss_dssp             -------------------------------GTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHH
T ss_pred             -------------------------------cCCCceEEeECCEEEEEEEEEEC-CCCC-CCCCCeEEEEHHHHHHHHHH
Confidence                                           99999999889999999999999 7898 67899999999999999999


Q ss_pred             hhccC
Q psy15063        412 NAIVT  416 (417)
Q Consensus       412 ~~~~~  416 (417)
                      ++...
T Consensus       238 ~~~~~  242 (254)
T 2bz6_H          238 LMRSE  242 (254)
T ss_dssp             HHTSC
T ss_pred             HHhcc
Confidence            98743

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=3e-47  Score=356.71  Aligned_cols=224  Identities=25%  Similarity=0.445  Sum_probs=194.9

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+..   .+..+.|++|.+...     ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AhC~~~~~---~~~~~~v~~G~~~~~-----~~~~   66 (232)
T 2oq5_A            1 IVGGTEVEEG---EWPWQASLQWDGSHRCGATLINATWLVSA---AHCFTTYK---NPARWTASFGVTIKP-----SKMK   66 (232)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGGSSCC---CGGGEEEEESSBSTT-----CSEE
T ss_pred             CCCCEECCCC---CCCeeEEEEeCCCeeEEEEEEcCCEEEEC---HHHcCCCC---CCceEEEEEeeEECC-----CceE
Confidence            5788888888   599999995   36899999999999999   99996532   346789999987532     4577


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.|.++++||+|+.....||||||||++|+.|+++++|||||.....+ .+..++++|||.+.... ..+..|+++.+++
T Consensus        67 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~  145 (232)
T 2oq5_A           67 RGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDG-YSQNHLRQAQVTL  145 (232)
T ss_dssp             EEEEEEEECTTCCTTCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTC-CCCSBCEEEEEEE
T ss_pred             EeEEEEEeCCCCCCCCCCCCEEEEEecCCCccCCceeEeECCCccccCCCCCEEEEEECCccCCCC-CCCceeeEeEEEE
Confidence            889999999999998899999999999999999999999999876544 78999999999987654 5678999999999


Q ss_pred             eChhhhhhhh--hccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEE
Q psy15063        261 LSNARCSTVI--EESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAI  337 (417)
Q Consensus       261 ~~~~~C~~~~--~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~  337 (417)
                      +++++|+..+  ...+.+.||||+... +.++|+|                                             
T Consensus       146 ~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G---------------------------------------------  180 (232)
T 2oq5_A          146 IDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQG---------------------------------------------  180 (232)
T ss_dssp             ECHHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTT---------------------------------------------
T ss_pred             eCHHHcCCccccCCccCCCEEeecCCCCCCccCCC---------------------------------------------
Confidence            9999998754  336789999999865 6799999                                             


Q ss_pred             ccCCeeeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        338 ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       338 ~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                               ||||||++.. +++|+|+||+||| .+|+ .++.|+|||||+.|++||++++++
T Consensus       181 -------------------------DsGgPL~~~~~~~~~~l~GI~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~~~~i  232 (232)
T 2oq5_A          181 -------------------------DSGGPLVSSDARDIWYLAGIVSWG-DECA-KPNKPGVYTRVTALRDWITSKTGI  232 (232)
T ss_dssp             -------------------------CTTCEEEEECTTSCEEEEEEEEEC-SSSS-BTTBCEEEEETGGGHHHHHHHHCC
T ss_pred             -------------------------CCCCcEEEECCCCCEEEEEEEEeC-CCCC-CCCCCeEEEEhHHhHHHHHHHhCC
Confidence                                     9999999975 7889999999999 7898 678999999999999999999864

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=2.7e-47  Score=355.14  Aligned_cols=218  Identities=28%  Similarity=0.491  Sum_probs=193.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc--cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR--QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~--~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.+|.++   +|||+|++.  .++|+||||+++|||||   |||+.        ..+.|++|.+++..... ..+.+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~CgGsLIs~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~~~~~   65 (222)
T 1hj8_A            1 IVGGYECKAY---SQPHQVSLNSGYHFCGGSLVNENWVVSA---AHCYK--------SRVEVRLGEHNIKVTEG-SEQFI   65 (222)
T ss_dssp             CBSCEECCTT---SCTTEEEEESSSEEEEEEEEETTEEEEC---GGGCC--------SSCEEEESCSBTTSCCS-CCEEE
T ss_pred             CCCCEECCCC---CCCEEEEEEcCCcEEEeEEecCCEEEEC---HHhcC--------CCeEEEEcccccccCCC-CcEEE
Confidence            5678888877   599999994  46999999999999999   99995        35789999998875544 56888


Q ss_pred             eeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeC
Q psy15063        183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLS  262 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~  262 (417)
                      .|+++++||+|+..+..||||||||++|+.|+++++|||||..... .+..++++|||.+.... ..+..|+++.+++++
T Consensus        66 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~-~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~  143 (222)
T 1hj8_A           66 SSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNTMSST-ADSNKLQCLNIPILS  143 (222)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSSCCC-TTCEEEEEESSCCCCSS-CCTTBCEEEEEEBCC
T ss_pred             EEEEEEECCCCCCCCCCCcEEEEEECCcccCCCceeccCCCCCCCC-CCCEEEEEECCCCCCCC-CCCceeEEEEEEEcC
Confidence            9999999999999889999999999999999999999999987544 78999999999987654 568899999999999


Q ss_pred             hhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        263 NARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       263 ~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      ..+|+..+...+.+.||||+... +.++|+|                                                 
T Consensus       144 ~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------------  174 (222)
T 1hj8_A          144 YSDCNNSYPGMITNAMFCAGYLEGGKDSCQG-------------------------------------------------  174 (222)
T ss_dssp             HHHHHHHSTTCCCTTEEEESCTTSSCBCCTT-------------------------------------------------
T ss_pred             HHHhhhhccCCCCCCeEEeccCCCCCccCCC-------------------------------------------------
Confidence            99999988777899999999754 7899999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                           ||||||++  +++  |+||+||| .+|+ ..+.|+|||||+.|++||++++..
T Consensus       175 ---------------------DSGgPL~~--~~~--l~Gi~S~g-~~C~-~~~~p~vyt~v~~~~~WI~~~~~~  221 (222)
T 1hj8_A          175 ---------------------DSGGPVVC--NGE--LQGVVSWG-YGCA-EPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             ---------------------CTTCEEEE--TTE--EEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             ---------------------CcccceEE--CCE--EEEEEeec-CCCC-CCCcCcEEEEhHHhHHHHHHHhhc
Confidence                                 99999999  664  99999999 8998 678999999999999999998863

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=2.6e-47  Score=365.78  Aligned_cols=242  Identities=26%  Similarity=0.415  Sum_probs=206.1

Q ss_pred             cCCCCccccccceeEecCCCCCCCCCCCCCcceeeEc--------cccceEEEeeCCeEEeeccceeeecCCCCCCCccc
Q psy15063         90 TYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIR--------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSE  161 (417)
Q Consensus        90 ~~~CG~~~~~~~~~~~~~g~~a~~~~~~~~PW~v~i~--------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~  161 (417)
                      .+.|| ....+...+|++|.+|.++   +|||+|+|.        .++|+||||+++|||||   |||+.+..   ....
T Consensus        10 ~~~CG-~~~~~~~~rIvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTA---AHCv~~~~---~~~~   79 (276)
T 2vnt_A           10 KFQCG-QKTLRPRFKIIGGEFTTIE---NQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISA---THCFIDYP---KKED   79 (276)
T ss_dssp             CCCTT-CCCC-----CCSSEECCGG---GSTTEEEEEEECSSSCEEEEEEEEEEETTEEEEC---GGGTTTCC---CGGG
T ss_pred             CCCCC-CcCCCCCCcEECCEECCCC---CCCcEEEEEEecCCCcceeEEEEEEeeCCEEEEC---cccccCCC---CCcc
Confidence            46799 4444556789999999988   499999994        25899999999999999   99996532   3467


Q ss_pred             eEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCC--CCCCeEEEEecCCc----CCCCceeeeeCCCCCCcc-CCCeE
Q psy15063        162 LVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPV----PLTGTIQPVCLPQKGESF-IGKRG  234 (417)
Q Consensus       162 ~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~--~~nDIALLkL~~pv----~~s~~v~PicLp~~~~~~-~~~~~  234 (417)
                      +.|++|.+++..... ..+.+.|.++++||+|+...  .+||||||+|+.++    .|+++|+|||||...... .+..+
T Consensus        80 ~~v~~g~~~~~~~~~-~~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~  158 (276)
T 2vnt_A           80 YIVYLGRSRLNSNTQ-GEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSC  158 (276)
T ss_dssp             EEEEESCCBSSSCCT-TCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEE
T ss_pred             EEEEeeeeeccCCCC-ceEEEEEEEEEEccccccccccccchhhhhhhhccccccccCcccccccccccccccccccceE
Confidence            899999999887666 78899999999999998664  46899999999765    589999999999876655 78999


Q ss_pred             EEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhc--cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCc
Q psy15063        235 HVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE--SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGT  311 (417)
Q Consensus       235 ~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~--~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~  311 (417)
                      .++|||.+.......+..|+.+.++++++++|...+..  .....++|++... +.++|+|                   
T Consensus       159 ~~~g~G~~~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~C~G-------------------  219 (276)
T 2vnt_A          159 EITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG-------------------  219 (276)
T ss_dssp             EEEESCCSSTTCSCCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTTSCCCCCTT-------------------
T ss_pred             EEEEeeccccCCCCcchhheeeeeeEecHHHhhhhhccCcccCccceeeccCCCCCCCCCC-------------------
Confidence            99999998876656788999999999999999987654  5677888888776 7899999                   


Q ss_pred             cccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccc
Q psy15063        312 TYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAI  391 (417)
Q Consensus       312 ~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~  391 (417)
                                                                         ||||||++..+++|+|+||+||| .+|+ 
T Consensus       220 ---------------------------------------------------DSGGPLv~~~~~~~~lvGIvS~G-~~C~-  246 (276)
T 2vnt_A          220 ---------------------------------------------------DSGGPLVCSLQGRMTLTGIVSWG-RGCA-  246 (276)
T ss_dssp             ---------------------------------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-
T ss_pred             ---------------------------------------------------CCCCeEEEeeCCeEEEEEEEEEC-CCCC-
Confidence                                                               99999999999999999999999 8998 


Q ss_pred             cCCCCeEEEecccchhHHhhhhc
Q psy15063        392 MPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       392 ~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                      ..+.|+|||||+.|++||+++|.
T Consensus       247 ~~~~P~vyt~V~~y~~WI~~~~~  269 (276)
T 2vnt_A          247 LKDKPGVYTRVSHFLPWIRSHTK  269 (276)
T ss_dssp             BTTBCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCCCEEEEEHHHHHHHHHHHhh
Confidence            78899999999999999999985

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=2e-47  Score=357.24  Aligned_cols=221  Identities=26%  Similarity=0.469  Sum_probs=195.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      |++|.+|.++   +|||+|++..    ++|+||||+++|||||   |||+..      ...+.|++|.++...... ..+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTA---AHC~~~------~~~~~V~~G~~~~~~~~~-~~~   67 (228)
T 1fxy_A            1 IVGGYNCKDG---EVPWQALLINEENEGFCGGTILSEFYILTA---AHCLYQ------AKRFKVRVGDRNTEQEEG-GEA   67 (228)
T ss_dssp             CBSCEECCTT---SCTTEEEEECTTSCEEEEEEECSSSEEEEC---GGGTTS------CSSCEEEEECSCTTTCCC-CEE
T ss_pred             CCCCEECCCC---CcCcEEEEEcCCCCeeEEEEEeeCCEEEEC---HHHCCC------CCcEEEEECccCccccCC-CcE
Confidence            5788888887   5999999943    4899999999999999   999953      267899999988765544 568


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      .+.|.++++||+|+..+..||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.+++
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~  146 (228)
T 1fxy_A           68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPA-TGTKCLISGWGNTASSGADYPDELQCLDAPV  146 (228)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEESSCCCSSSCCCCSSCEEEEEEB
T ss_pred             EEEEEEEEECCCCCCCCCcCcEEEEEECCcccCCCceeccCCCCCCCC-CCCEEEEEecCccCCCCCCCCccceEEEEEE
Confidence            889999999999999999999999999999999999999999987654 7999999999998765523688999999999


Q ss_pred             eChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        261 LSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       261 ~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      ++..+|+..+...+.+.||||+... +.++|+|                                               
T Consensus       147 ~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G-----------------------------------------------  179 (228)
T 1fxy_A          147 LSQAKCEASYPGKITSNMFCVGFLEGGKDSCQG-----------------------------------------------  179 (228)
T ss_dssp             CCHHHHHHHSTTTCCTTEEEESCTTCSCBCCTT-----------------------------------------------
T ss_pred             eCHHHhHhhcCCCCCCCEEEeccCCCCCccccC-----------------------------------------------
Confidence            9999999988777899999999754 7899999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                             ||||||++  ++  +|+||+||| .+|+ ..+.|+|||||+.|++||++++..
T Consensus       180 -----------------------DSGgPL~~--~~--~l~Gi~S~g-~~C~-~~~~p~vyt~V~~y~~WI~~~~~~  226 (228)
T 1fxy_A          180 -----------------------DSGGPVVC--NG--QLQGVVSWG-DGCA-QKNKPGVYTKVYNYVKWIKNTIAA  226 (228)
T ss_dssp             -----------------------CTTCEEEE--TT--EEEEEEEEC-SSSS-BTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             -----------------------ccccceEE--CC--EEEEEEEEC-CCCC-CCCCCEEEEEhHHHHHHHHHHHhc
Confidence                                   99999999  55  499999999 8998 778999999999999999999864

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=2.4e-47  Score=358.36  Aligned_cols=223  Identities=24%  Similarity=0.416  Sum_probs=196.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc-------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ-------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~-------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.++   +|||+|+|..       ++|+||||+++|||||   |||+.+.      ..+.|++|.+++..... 
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTA---AHC~~~~------~~~~V~~G~~~~~~~~~-   67 (236)
T 1elt_A            1 VVGGRVAQPN---SWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTA---AHCVDSA------RTWRVVLGEHNLNTNEG-   67 (236)
T ss_dssp             CBSSEECCTT---SSTTEEEEEEEETTEEEEEEEEEEEETTEEEEC---HHHHSSC------CCEEEEESCSBTTSCCS-
T ss_pred             CCCCEECCCC---CCCCEEEEEEecCCceeeEEEEEEEeCCEEEEC---HHhhCCc------CceEEEEccccCCCCCC-
Confidence            5688888887   5999999953       6899999999999999   9999642      67899999998876554 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCC--CCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccce
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVL--SNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                      ..+.+.|.++++||+|+....  .||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+
T Consensus        68 ~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~  146 (236)
T 1elt_A           68 KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGG-PLSDSLK  146 (236)
T ss_dssp             CCEEECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTC-CCCSBCE
T ss_pred             CcEEEEEEEEEECCCCCCCCCCCCccEEEEECCCCCccCCcEEeccCCCccccCCCCCEEEEEeCCCcCCCC-CcChhhe
Confidence            568899999999999998876  8999999999999999999999999876544 78899999999987654 5678999


Q ss_pred             EEEEEEeChhhhhhh--hhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        255 KLEVKVLSNARCSTV--IEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~--~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      ++.++++++++|+..  +...+.+.||||+.. +.++|+|                                        
T Consensus       147 ~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~-~~~~C~G----------------------------------------  185 (236)
T 1elt_A          147 QAWLPSVDHATCSSSGWWGSTVKTTMVCAGGG-ANSGCNG----------------------------------------  185 (236)
T ss_dssp             EEECCEECHHHHTSTTTTGGGSCTTEEEECCS-SCBCCTT----------------------------------------
T ss_pred             EeEeeecCHHHhccccccCCcCCcceEEecCC-CCccCCC----------------------------------------
Confidence            999999999999986  333688999999854 5899999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHhh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                                                    ||||||++..+++|+|+||+|||. .+|+ ..+.|+|||||+.|++||++
T Consensus       186 ------------------------------DSGgPL~~~~~g~~~l~Gi~S~g~~~~C~-~~~~p~vyt~V~~~~~WI~~  234 (236)
T 1elt_A          186 ------------------------------DSGGPLNCQVNGSYYVHGVTSFVSSSGCN-ASKKPTVFTRVSAYISWMNG  234 (236)
T ss_dssp             ------------------------------CTTCEEEEEETTEEEEEEEEEECCSSCTT-CTTCCEEEEEGGGGHHHHHH
T ss_pred             ------------------------------CCCCeeEEEECCEEEEEEEEEEeCCCCCC-CCCCCeEEEEHHHhHHHHHh
Confidence                                          999999999899999999999994 4898 67899999999999999998


Q ss_pred             hh
Q psy15063        412 NA  413 (417)
Q Consensus       412 ~~  413 (417)
                      +|
T Consensus       235 ~i  236 (236)
T 1elt_A          235 IM  236 (236)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=4e-47  Score=355.03  Aligned_cols=221  Identities=26%  Similarity=0.434  Sum_probs=193.8

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      |++|.+|.++   +|||+|+|.    .++|+||||+++|||||   |||+.        ..+.|++|.+++....+...+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~~~~~   66 (227)
T 2psx_A            1 IINGSDCDMH---TQPWQAALLLRPNQLYCGAVLVHPQWLLTA---AHCRK--------KVFRVRLGHYSLSPVYESGQQ   66 (227)
T ss_dssp             CBTCEECCTT---SCTTEEEEEETTTEEEEEEEEEETTEEEEC---GGGCC--------SSCEEEESCCBSSCCCCTTCE
T ss_pred             CCCCEECCCC---CCCCEEEEEecCCCceEEEEEEcCCEEEEh---HHcCC--------CCcEEEEeeeecccCCCCCcE
Confidence            5788888888   499999994    35899999999999999   99985        357899999988754332568


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      .+.|.++++||+|+.....||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.+++
T Consensus        67 ~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i  145 (227)
T 2psx_A           67 MFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPS-AGTKCLVSGWGTTKSPQVHFPKVLQCLNISV  145 (227)
T ss_dssp             EEEEEEEEECTTCCSSSCTTCCEEEEESSCCCCCSSSCCCCBCSSCCC-TTCEEEEEESSCSSSSSCCCCSBCEEEEEEB
T ss_pred             EEEEEEEEeCCCCCCCCCCCCEEEEEeCCCCCCCCceeeeECCCCCCC-CCCEEEEEeCcccCCCCCCCCchheEEEEEe
Confidence            889999999999999889999999999999999999999999965433 7899999999998765434678999999999


Q ss_pred             eChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccC
Q psy15063        261 LSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALD  340 (417)
Q Consensus       261 ~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~  340 (417)
                      ++.++|+..+...+.+.||||+...+.++|+|                                                
T Consensus       146 ~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~C~G------------------------------------------------  177 (227)
T 2psx_A          146 LSQKRCEDAYPRQIDDTMFCAGDKAGRDSCQG------------------------------------------------  177 (227)
T ss_dssp             CCHHHHHHHSTTTCCTTEEEECCSTTCBCCTT------------------------------------------------
T ss_pred             cCHhHhhhhcCCCCCCCEEcccCCCCCccCCC------------------------------------------------
Confidence            99999999887778999999997668899999                                                


Q ss_pred             CeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        341 GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       341 ~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                            ||||||++  ++  +|+||+|||..+|+ .++.|+|||||+.|++||++++..
T Consensus       178 ----------------------DSGgPL~~--~~--~l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI~~~~~~  225 (227)
T 2psx_A          178 ----------------------DSGGPVVC--NG--SLQGLVSWGDYPCA-RPNRPGVYTNLCKFTKWIQETIQA  225 (227)
T ss_dssp             ----------------------CTTCEEEE--TT--EEEEEEEECCSSTT-CTTCCEEEEEGGGCHHHHHHHHHH
T ss_pred             ----------------------CCCcceee--CC--EEEEEEeecCCCCC-CCCCCcEEEEHHHhHHHHHHHHhc
Confidence                                  99999999  55  59999999966898 678999999999999999999864

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=3.3e-47  Score=354.78  Aligned_cols=218  Identities=25%  Similarity=0.484  Sum_probs=193.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc--cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR--QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~--~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.+|.++   +|||+|++.  .++|+||||+++|||||   |||+.        ..+.|++|.+++..... ..+.+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~CgGsLIs~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~~~~~   65 (223)
T 3mfj_A            1 IVGGYTCGAN---TVPYQVSLNSGYHFCGGSLINSQWVVSA---AHCYK--------SGIQVRLGEDNINVVEG-NEQFI   65 (223)
T ss_dssp             CBSCEECCTT---SSTTEEEEESSSEEEEEEEEETTEEEEC---GGGCC--------SSCEEEESCSSTTSCCS-CCEEE
T ss_pred             CCCCEECCCC---cCCEEEEEEcCCeEEEEEEecCCEEEEh---HHhcC--------CCcEEEECCceecccCC-CcEEE
Confidence            5678888887   599999994  35899999999999999   99993        45789999998865544 56888


Q ss_pred             eeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeC
Q psy15063        183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLS  262 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~  262 (417)
                      .|.++++||+|+.....||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.+++++
T Consensus        66 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~  144 (223)
T 3mfj_A           66 SASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS  144 (223)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCCC-TTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCC
T ss_pred             EeeEEEECCCCCCCCCCCCEEEEEeCCCcccCCcEeeeECCCCCCC-CCCEEEEEeeeccCCCCCcccchheEEEEEEeC
Confidence            9999999999999999999999999999999999999999987654 799999999999875443567899999999999


Q ss_pred             hhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        263 NARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       263 ~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      +++|+..+...+.+.||||+... +.++|+|                                                 
T Consensus       145 ~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------------  175 (223)
T 3mfj_A          145 DSSCKSAYPGQITSNMFCAGYLEGGKDSCQG-------------------------------------------------  175 (223)
T ss_dssp             HHHHHHHSTTTCCTTEEEESCTTSSCBCCTT-------------------------------------------------
T ss_pred             HHHhhhhhcCcCCCCEEEccCCCCCCCcCCC-------------------------------------------------
Confidence            99999988767899999999754 7899999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                           ||||||++  +++  |+||+||| .+|+ ..+.|+|||||+.|++||++++.
T Consensus       176 ---------------------DSGgPL~~--~~~--l~GI~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~~i~  221 (223)
T 3mfj_A          176 ---------------------DSGGPVVC--SGK--LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWIKQTIA  221 (223)
T ss_dssp             ---------------------CTTCEEEE--TTE--EEEEEEEC-SSSS-BTTBCEEEEEGGGGHHHHHHHHH
T ss_pred             ---------------------CcccceEE--CCE--EEEEEEEC-CCCC-CCCCCeEEEEHHHhHHHHHHHHh
Confidence                                 99999999  665  99999999 8998 67899999999999999999875

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=4.8e-47  Score=353.68  Aligned_cols=218  Identities=28%  Similarity=0.480  Sum_probs=193.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc---ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ---DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~---~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|++..   ++|+||||+++|||||   |||+.        ..+.|++|.+++..... ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~~~~   65 (223)
T 1lo6_A            1 LVHGGPCDKT---SHPYQAALYTSGHLLCGGVLIHPLWVLTA---AHCKK--------PNLQVFLGKHNLRQRES-SQEQ   65 (223)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCC--------TTCEEEESCSBTTSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCCEEEEecCCCEEEEeEEecCCEEEEC---ccCCC--------CCeEEEEcceecCCCCC-CcEE
Confidence            5688888887   5999999953   6999999999999999   99984        35789999998876554 5688


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      +.|.++++||+|+..+..||||||||++|+.|+++++|||||..... .+..++++|||.+. .. ..+..|+++.++++
T Consensus        66 ~~v~~i~~Hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~-~~~~~~v~GwG~~~-~~-~~~~~l~~~~~~~~  142 (223)
T 1lo6_A           66 SSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSA-NTTSCHILGWGKTA-DG-DFPDTIQCAYIHLV  142 (223)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTTC-CCCEEEEEESSCCT-TS-SCCSBCEEEEEEEE
T ss_pred             EEEEEEEECCCCCCCCCcCeEEEEEECCcccCCCceeecccCCCCCC-CCCEEEEEEECCCC-CC-CcCceeeEEEEEEe
Confidence            89999999999999999999999999999999999999999987654 78999999999986 22 57889999999999


Q ss_pred             ChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccC
Q psy15063        262 SNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALD  340 (417)
Q Consensus       262 ~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~  340 (417)
                      ++++|+..+...+++.||||+... +.++|+|                                                
T Consensus       143 ~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G------------------------------------------------  174 (223)
T 1lo6_A          143 SREECEHAYPGQITQNMLCAGDEKYGKDSCQG------------------------------------------------  174 (223)
T ss_dssp             CHHHHHHHSTTTCCTTEEEEECTTTCCBCCTT------------------------------------------------
T ss_pred             CHHHhhhhhCCCCCCCeEEeecCCCCCeeccc------------------------------------------------
Confidence            999999988777899999999865 7899999                                                


Q ss_pred             CeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        341 GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       341 ~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                            ||||||++  ++.  |+||+|||..+|+ ..+.|+|||||+.|++||++++..
T Consensus       175 ----------------------DsGgPL~~--~~~--l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 1lo6_A          175 ----------------------DSGGPLVC--GDH--LRGLVSWGNIPCG-SKEKPGVYTNVCRYTNWIQKTIQA  222 (223)
T ss_dssp             ----------------------TTTCEEEE--TTE--EEEEEEECCSSCC-CSSSCEEEEEGGGGHHHHHHHHC-
T ss_pred             ----------------------cCCCcEEe--CCE--EEEEEeeCCCCCC-CCCCCcEEEEHHHHHHHHHHHhcc
Confidence                                  99999999  564  9999999966898 678999999999999999999864

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=3e-47  Score=355.40  Aligned_cols=219  Identities=27%  Similarity=0.496  Sum_probs=191.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc---ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ---DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~---~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|..   ++|+||||+++|||||   |||+.        ..+.|++|.+++..... ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGsLI~~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~~~~   65 (225)
T 1npm_A            1 ILEGRECIPH---SQPWQAALFQGERLICGGVLVGDRWVLTA---AHCKK--------QKYSVRLGDHSLQSRDQ-PEQE   65 (225)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCC--------SSCEEEESCSBTTC--C-CCEE
T ss_pred             CCCCEECCCC---CcCcEEEEeeCCceEEEEEEECCCEEEEh---HHcCC--------CCceEEEeeeEcCCCCC-CcEE
Confidence            5788888888   5999999953   6999999999999999   99984        45789999998876544 5688


Q ss_pred             EeeeEEEeCCCC-CC--CCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEE
Q psy15063        182 RGVRRVLFHSHF-HP--FVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEV  258 (417)
Q Consensus       182 ~~V~~i~iHP~Y-~~--~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v  258 (417)
                      +.|.++++||+| +.  ....||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.+
T Consensus        66 ~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~L~~~~~  144 (225)
T 1npm_A           66 IQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPK-VGQKCIISGWGTVTSPQENFPNTLNCAEV  144 (225)
T ss_dssp             ECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCCC-TTCEEEEEESSCSSSSSCCCCSBCEEEEE
T ss_pred             EEEEEEEECCCCCCCCccCccccEEEEeeCCcccCCCceeceECCCCCCC-CCCEEEEEeCCcccCCCCCCCccceEeEE
Confidence            999999999999 55  677899999999999999999999999987644 79999999999985443357889999999


Q ss_pred             EEeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEc
Q psy15063        259 KVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIA  338 (417)
Q Consensus       259 ~i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~  338 (417)
                      +++++++|+..+...+.+.||||+..++.++|+|                                              
T Consensus       145 ~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~C~G----------------------------------------------  178 (225)
T 1npm_A          145 KIYSQNKCERAYPGKITEGMVCAGSSNGADTCQG----------------------------------------------  178 (225)
T ss_dssp             EECCHHHHHHHSTTTCCTTEEEEECTTCCBCCTT----------------------------------------------
T ss_pred             eeecHHHhhHHhCCCCCCCEEeecCCCCCeecCC----------------------------------------------
Confidence            9999999999887778999999998667899999                                              


Q ss_pred             cCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        339 LDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       339 ~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                              ||||||++  ++.  |+||+|||..+|+ ..+.|+|||||+.|++||+++|+
T Consensus       179 ------------------------DSGgPL~~--~~~--l~GI~S~g~~~C~-~~~~p~vyt~V~~y~~WI~~~~~  225 (225)
T 1npm_A          179 ------------------------DSGGPLVC--DGM--LQGITSWGSDPCG-KPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             ------------------------CTTCEEEE--TTE--EEEEEEECCSSSC-BTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             ------------------------CCCchheE--CCE--EEEEEEeCCCCCC-CCCCCeEEEEHHHHHHHHHHHhC
Confidence                                    99999999  664  8999999966898 77899999999999999999874

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=2.7e-47  Score=359.31  Aligned_cols=223  Identities=29%  Similarity=0.482  Sum_probs=194.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+.     ...+.|++|.+++..    ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AHC~~~~-----~~~~~v~~G~~~~~~----~~~~   65 (240)
T 2zgc_A            1 IIGGREVIPH---SRPYMASLQRNGSHLCGGVLVHPKWVLTA---AHCLAQR-----MAQLRLVLGLHTLDS----PGLT   65 (240)
T ss_dssp             CBTCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGGCSC-----GGGEEEEESCSBSSS----CCEE
T ss_pred             CCCCEECCCC---CcCcEEEEEeCCCeEEEEEEEcCCEEEEc---HHhcCCC-----CCCEEEEecccccCC----CCeE
Confidence            5788888888   499999995   36999999999999999   9999653     137899999988765    3478


Q ss_pred             EeeeEEEeCCCCCCCC-CCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~-~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      +.|+++++||+|+... ..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++.++
T Consensus        66 ~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~  144 (240)
T 2zgc_A           66 FHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGG-RLSRVLRELDLQ  144 (240)
T ss_dssp             EEEEEEEECTTCBCTTSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTC-CBCSBCEEEEEE
T ss_pred             EEEEEEEECCCCCCCCCCcccEEEEEeCCcccCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCC-CcCceeeeeeee
Confidence            8999999999999876 88999999999999999999999999876543 78999999999987544 567899999999


Q ss_pred             EeChhhhhh--hhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        260 VLSNARCST--VIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       260 i~~~~~C~~--~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +++..+|+.  .+...+.+.||||+... +.++|+|                                            
T Consensus       145 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G--------------------------------------------  180 (240)
T 2zgc_A          145 VLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKG--------------------------------------------  180 (240)
T ss_dssp             ECCHHHHTSTTTTTTCCCTTEEEEECSSTTCBCCTT--------------------------------------------
T ss_pred             ecCHHHhCCccccCCCCCCceEeeccCCCCCccCCC--------------------------------------------
Confidence            999999998  56556889999998765 7899999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                                ||||||++  ++.++|+||+|||..+|+ ..+.|+|||||+.|++||++++...
T Consensus       181 --------------------------DSGgPL~~--~~~~~l~Gi~S~g~~~C~-~~~~p~vyt~V~~y~~WI~~~~~~~  231 (240)
T 2zgc_A          181 --------------------------DSGGPLVC--GKGRVLAGVLSFSSRVCT-DIFKPPVATAVAPYVSWIRKVTGRS  231 (240)
T ss_dssp             --------------------------CTTCEEEE--TTTTEEEEEECCCCSSTT-CTTSCCEEEESGGGHHHHHHHHCCC
T ss_pred             --------------------------CccCeeEE--CCCCEEEEEEEECCCCCC-CCCCCcEEEEHHHhHHHHHHHHhhc
Confidence                                      99999999  455789999999966898 6778999999999999999998754

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=5.1e-48  Score=383.26  Aligned_cols=236  Identities=19%  Similarity=0.308  Sum_probs=191.9

Q ss_pred             cCCCCcccc-ccceeEecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEE
Q psy15063         90 TYSCGDVSK-ERVTYFKSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLH  165 (417)
Q Consensus        90 ~~~CG~~~~-~~~~~~~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~  165 (417)
                      ...||.... .....+|++|.+|.+++   |||+|+|.   .++|+||||+++|||||   |||+.....    ....+.
T Consensus        87 ~p~CG~p~~~~~~~~RIvGG~~a~~g~---~Pw~v~l~~~~~~~CGGsLIs~~~VLTA---AHCv~~~~~----~~~~~~  156 (347)
T 4f4o_C           87 EAVCGKPKNPVDQVQRIMGGSLDAKGS---FPWQAKMISHHNLTSGATLINEQWLLTT---AKNLRLGHK----NDTKAK  156 (347)
T ss_dssp             EECCSCCSSCC-----CCSCCBCCSCC---CTTCEEEECTTCCEEECCBCSSSEEEEC---HHHHTTTSC----TTCCHH
T ss_pred             cCCCCCCCCCCCCCCeEECCEECCCCC---CCcEEEEEeCCCEEEEEEEEcCCEEEeC---cccccCCCC----CcceEE
Confidence            467994332 23457899999999994   99999994   45899999999999999   999964321    223333


Q ss_pred             eceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCC
Q psy15063        166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFP  245 (417)
Q Consensus       166 lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~  245 (417)
                      .+......... ..+.+.|+++++||+|+    .||||||||++|++|+++|+|||||.......+..++++|||.+...
T Consensus       157 ~~~~~~~~~~~-~~~~~~V~~i~~HP~y~----~nDIALlkL~~~v~~~~~v~PicLp~~~~~~~g~~~~v~GWG~~~~~  231 (347)
T 4f4o_C          157 DIAPTLRLYVG-KKQEVEIEKVIFHPDNS----TVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANL  231 (347)
T ss_dssp             HHGGGCEEEET-TTEEECEEEEEECSCTT----TCCCEEEEESSCCCCSSSCCCCBCCSSCCCCTTCEEEEEECSBCTTS
T ss_pred             eeeeeeeecCC-CeEEEEEEEEEECcCCC----CCCEEEEEECCCccCCCceeeeecCccccCCCCcEEEEeccccCCCC
Confidence            33333332222 55888999999999996    58999999999999999999999998765548999999999997654


Q ss_pred             CCCCCccceEEEEEEeChhhhhhhhhc-----------------cCCCCeEEecCCC-CCCCccCCCCCccccccccccc
Q psy15063        246 MGEPSPTLQKLEVKVLSNARCSTVIEE-----------------SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQF  307 (417)
Q Consensus       246 ~~~~~~~L~~~~v~i~~~~~C~~~~~~-----------------~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~w  307 (417)
                      .  .+..||++.++++++++|++.|..                 .+++.||||+... ++++|+|               
T Consensus       232 ~--~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~G---------------  294 (347)
T 4f4o_C          232 N--FTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYG---------------  294 (347)
T ss_dssp             S--BCSSCEEEEEEEECHHHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTT---------------
T ss_pred             C--CCccceEEEEEEeCHHHHHHHhccccccccccccccccccccccCCeEEecCCCCCCCCCCC---------------
Confidence            4  788999999999999999987753                 3678999999776 8999999               


Q ss_pred             ccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEc
Q psy15063        308 HQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYG  385 (417)
Q Consensus       308 i~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g  385 (417)
                                                                             ||||||++..  +++|+|+||+|||
T Consensus       295 -------------------------------------------------------DSGGPLv~~~~~~~~~~lvGIvS~G  319 (347)
T 4f4o_C          295 -------------------------------------------------------DAGSAFAVHDKDDDTWYAAGILSFD  319 (347)
T ss_dssp             -------------------------------------------------------CTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred             -------------------------------------------------------CCCcceEEEeCCCCEEEEEEEEEeC
Confidence                                                                   9999999865  7899999999999


Q ss_pred             CCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        386 VTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       386 ~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                       .+|+  .+.|+|||||+.|++||+++|.-
T Consensus       320 -~~C~--~~~pgVYTrVs~y~~WI~~~i~~  346 (347)
T 4f4o_C          320 -KSCR--TAEYGVYVRVTSILDWIQTTIAD  346 (347)
T ss_dssp             -CCTT--TSSCEEEEEHHHHHHHHHHHHTC
T ss_pred             -CCCC--CCCCeEEEEHHHHHHHHHHHHHc
Confidence             8999  56799999999999999999863

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=4.5e-47  Score=380.19  Aligned_cols=239  Identities=31%  Similarity=0.504  Sum_probs=202.1

Q ss_pred             CCCCccccccceeEecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEec
Q psy15063         91 YSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLG  167 (417)
Q Consensus        91 ~~CG~~~~~~~~~~~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG  167 (417)
                      ..||...  ....+|++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.....  ....+.|++|
T Consensus       106 ~~Cg~~~--~~~~rIvgG~~a~~~---~~Pw~v~l~~~~~~~CgGsLIs~~~VLTA---AHCv~~~~~--~~~~~~V~~G  175 (372)
T 1z8g_A          106 QDCGRRK--LPVDRIVGGRDTSLG---RWPWQVSLRYDGAHLCGGSLLSGDWVLTA---AHCFPERNR--VLSRWRVFAG  175 (372)
T ss_dssp             CCCSCCC--CC---CBSCEECCTT---SSTTEEEEEETTEEEEEEEESSSSEEEEC---GGGCCGGGC--CGGGEEEEES
T ss_pred             cccCCcC--CCCCceECCEECCCC---CCCcEEEEEeCCceEEEEEEecCCEEEEC---hhhcCCCCC--ccceEEEEEe
Confidence            3578332  234689999999988   499999995   46999999999999999   999953211  3467899999


Q ss_pred             eecCCCCCCCCcEEEeeeEEEeCCCC------CCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcC
Q psy15063        168 DHDLTQLNETSHVRRGVRRVLFHSHF------HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWG  240 (417)
Q Consensus       168 ~~~~~~~~~~~~q~~~V~~i~iHP~Y------~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG  240 (417)
                      .++....   ..+.+.|++|++||+|      +..+..||||||||++|+.|+++|+|||||.....+ .+..|+++|||
T Consensus       176 ~~~~~~~---~~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~g~~~~v~GWG  252 (372)
T 1z8g_A          176 AVAQASP---HGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG  252 (372)
T ss_dssp             CSBTTCT---TSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESS
T ss_pred             eEeccCC---CCcEEEEEEEEECCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCcccCCCCCCEEEEEecC
Confidence            9877543   3467899999999999      777889999999999999999999999999876544 78999999999


Q ss_pred             ccCCCCCCCCccceEEEEEEeChhhhhhh--hhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCc
Q psy15063        241 VTSFPMGEPSPTLQKLEVKVLSNARCSTV--IEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPR  317 (417)
Q Consensus       241 ~~~~~~~~~~~~L~~~~v~i~~~~~C~~~--~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~  317 (417)
                      .+.... ..+..|+++.++++++.+|+..  +...+++.||||+... +.++|+|                         
T Consensus       253 ~t~~~~-~~~~~L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCag~~~~~~d~C~G-------------------------  306 (372)
T 1z8g_A          253 NTQYYG-QQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQG-------------------------  306 (372)
T ss_dssp             BSSTTS-CBCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTT-------------------------
T ss_pred             CCCCCC-CCCceeeEEEEEecChHHhCcchhcCCcCCCCeEeeecCCCCCcCCCC-------------------------
Confidence            988654 5678999999999999999864  4447889999999766 7899999                         


Q ss_pred             ceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeC----CeEEEEeEEEEcCCCccccC
Q psy15063        318 RRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQD----GYHVLAGIVSYGVTGCAIMP  393 (417)
Q Consensus       318 ~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~----g~~~l~GI~S~g~~~C~~~~  393 (417)
                                                                   ||||||++..+    ++|+|+||+||| .+|+ .+
T Consensus       307 ---------------------------------------------DSGGPLv~~~~~~~~~~~~lvGIvS~G-~~C~-~~  339 (372)
T 1z8g_A          307 ---------------------------------------------DSGGPFVCEDSISRTPRWRLCGIVSWG-TGCA-LA  339 (372)
T ss_dssp             ---------------------------------------------CTTCEEEEEECTTSSCEEEEEEEEEEB-SSSS-CT
T ss_pred             ---------------------------------------------CCccceEeccCcCCCCCEEEEEEEEeC-CCCC-CC
Confidence                                                         99999999874    899999999999 8998 77


Q ss_pred             CCCeEEEecccchhHHhhhhcc
Q psy15063        394 SYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       394 ~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                      +.|+|||||+.|++||+++|..
T Consensus       340 ~~p~vyt~V~~y~~WI~~~i~~  361 (372)
T 1z8g_A          340 QKPGVYTKVSDFREWIFQAIKT  361 (372)
T ss_dssp             TCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCeEEEEHHHHHHHHHHHHhc
Confidence            8999999999999999998864

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=5.9e-47  Score=353.03  Aligned_cols=218  Identities=24%  Similarity=0.433  Sum_probs=191.5

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.        ..+.|.+|.+++....+...+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGsLIs~~~VLTA---AHC~~--------~~~~v~~g~~~~~~~~~~~~~~   66 (223)
T 2bdg_A            1 IINGEDCSPH---SQPWQAALVMENELFCSGVLVHPQWVLSA---AHCFQ--------NSYTIGLGLHSLEADQEPGSQM   66 (223)
T ss_dssp             CBTCEECCTT---SSTTEEEEECSSCEEEEEEEEETTEEEEC---GGGCC--------SSEEEEESCSBSCGGGCTTCEE
T ss_pred             CCCCEECCCC---CCCcEEEEeeCCCEEEEEEEecCCEEEEh---HHhCC--------CCeEEEEeeeecCCCCCCCcEE
Confidence            5788888888   499999995   36899999999999999   99995        3578999998876433325678


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      +.|.++++||+|+..+..||||||||++|+.|+++++|||||..... .+..++++|||.+..+  ..+..|+++.++++
T Consensus        67 ~~v~~~~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~-~~~~~~v~GwG~~~~~--~~~~~L~~~~~~~~  143 (223)
T 2bdg_A           67 VEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPT-AGNSCLVSGWGLLANG--RMPTVLQCVNVSVV  143 (223)
T ss_dssp             EEEEEEEECTTTTSSTTCSCCEEEEESSCCCCCSSCCCCCBCSSCCC-TTCEEEEEESCCCTTS--CCCSBCEEEEEEBC
T ss_pred             EEEEEEEeCCCCCCCCCcCcEEEEEECCcccCCCceecccCCCCCCC-CCCEEEEEeCcccCCC--CCCCcceEEEEEEe
Confidence            89999999999999999999999999999999999999999986544 7899999999998754  46789999999999


Q ss_pred             ChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccC
Q psy15063        262 SNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALD  340 (417)
Q Consensus       262 ~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~  340 (417)
                      ++++|+..+...+.+.||||+... +.++|+|                                                
T Consensus       144 ~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G------------------------------------------------  175 (223)
T 2bdg_A          144 SEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNG------------------------------------------------  175 (223)
T ss_dssp             CHHHHHHHSTTTCCTTEEEECCSTTCCBCCTT------------------------------------------------
T ss_pred             CHHHhhhhhCCCCCCCeEeccCCCCCCCcCCC------------------------------------------------
Confidence            999999988777899999999754 7899999                                                


Q ss_pred             CeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        341 GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       341 ~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                            ||||||++  ++  +|+||+|||..+|+ ..+.|+|||||+.|++||++++.
T Consensus       176 ----------------------DsGgPL~~--~~--~l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI~~~i~  222 (223)
T 2bdg_A          176 ----------------------DSGGPLIC--NG--YLQGLVSFGKAPCG-QVGVPGVYTNLCKFTEWIEKTVQ  222 (223)
T ss_dssp             ----------------------CTTCEEEE--TT--EEEEEEEECCSSTT-CTTCCEEEECGGGTHHHHHHHHH
T ss_pred             ----------------------CCCchheE--cc--EEEEEEEecCCCCC-CCCCCcEEEEHHHhHHHHHHHhc
Confidence                                  99999999  55  59999999944798 67899999999999999999875

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=4.7e-47  Score=357.72  Aligned_cols=228  Identities=26%  Similarity=0.398  Sum_probs=199.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc--------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR--------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNE  176 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~--------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~  176 (417)
                      |++|.++.++   +|||+|+|.        .++|+||||+++|||||   |||+.+..   ....+.|++|.+++.....
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~~CgGtLI~~~~VLTA---AHC~~~~~---~~~~~~v~~g~~~~~~~~~   71 (247)
T 3mhw_U            1 IIGGEFTTIE---NQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISA---THCFIDYP---KKEDYIVYLGRSRLNSNTQ   71 (247)
T ss_dssp             CBSSEECCGG---GSTTEEEEEEECTTSCEEEEEEEEEEETTEEEEC---GGGTTTSC---CGGGEEEEESCCBSSSCCT
T ss_pred             CCCCEECCCC---CCCCEEEEEEecCCCccceEEEEEEEeCCEEEEc---HHhCcCCC---CCccEEEEeccccccCCCC
Confidence            5678888877   599999994        45899999999999999   99996532   3467899999998877655


Q ss_pred             CCcEEEeeeEEEeCCCCCCCC--CCCCeEEEEecCC----cCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCC
Q psy15063        177 TSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRP----VPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEP  249 (417)
Q Consensus       177 ~~~q~~~V~~i~iHP~Y~~~~--~~nDIALLkL~~p----v~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~  249 (417)
                       ..+.+.|.++++||+|+..+  ..||||||||++|    +.+++.++|||||...... .+..|+++|||.+.......
T Consensus        72 -~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~  150 (247)
T 3mhw_U           72 -GEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLY  150 (247)
T ss_dssp             -TCEEEEEEEEEECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSC
T ss_pred             -CCEEEEEEEEEECCCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCccc
Confidence             67889999999999998776  5799999999999    8899999999999865544 78999999999987765346


Q ss_pred             CccceEEEEEEeChhhhhhhh--hccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccc
Q psy15063        250 SPTLQKLEVKVLSNARCSTVI--EESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEA  326 (417)
Q Consensus       250 ~~~L~~~~v~i~~~~~C~~~~--~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~  326 (417)
                      +..|+++.+++++..+|+..+  ...+.+.||||+... +.++|+|                                  
T Consensus       151 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G----------------------------------  196 (247)
T 3mhw_U          151 PEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG----------------------------------  196 (247)
T ss_dssp             CSBCEEEEEEEECHHHHTSTTTTGGGCCTTEEEEECTTSCCBCCTT----------------------------------
T ss_pred             chhheeeEEEEEChHHhcCccccCCcCCCCeEecCCCCCCCccCCC----------------------------------
Confidence            889999999999999999753  337899999999876 7899999                                  


Q ss_pred             ccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccch
Q psy15063        327 DIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYI  406 (417)
Q Consensus       327 ~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~  406 (417)
                                                          ||||||++..+++|+|+||+||| .+|+ ..+.|+|||||+.|+
T Consensus       197 ------------------------------------DSGgPl~~~~~~~~~l~Gi~S~g-~~c~-~~~~p~vyt~V~~~~  238 (247)
T 3mhw_U          197 ------------------------------------DSGGPLVCSLQGRMTLTGIVSWG-RGCA-LKDKPGVYTRVSHFL  238 (247)
T ss_dssp             ------------------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-BTTBCEEEEEGGGCH
T ss_pred             ------------------------------------CCCCeEEEEECCCEEEEEEEEEC-CCCC-CCCCCeEEEEHHHHH
Confidence                                                99999999989999999999999 8998 788999999999999


Q ss_pred             hHHhhhhc
Q psy15063        407 RWIHVNAI  414 (417)
Q Consensus       407 ~WI~~~~~  414 (417)
                      +||+++++
T Consensus       239 ~WI~~~~~  246 (247)
T 3mhw_U          239 PWIRSHTK  246 (247)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            99999875

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=8.1e-47  Score=355.58  Aligned_cols=227  Identities=26%  Similarity=0.402  Sum_probs=196.8

Q ss_pred             EecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        104 FKSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       104 ~~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      +|++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+..   ....+.|++|.+++...+. ..+
T Consensus         2 rIvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AHC~~~~~---~~~~~~v~~G~~~~~~~~~-~~~   71 (240)
T 1mza_A            2 EIIGGKEVSPH---SRPFMASIQYGGHHVCGGVLIDPQWVLTA---AHCQYRFT---KGQSPTVVLGAHSLSKNEA-SKQ   71 (240)
T ss_dssp             CCCCCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGSCTTC---SCSCEEEEESCSBSSSCCT-TCE
T ss_pred             ceECCEECCCC---CCCeEEEEeeCCceEEEEEEecCCEEEEC---HHhCCCCC---CCCCeEEEeCceecCCCCC-ceE
Confidence            58899999888   499999995   46999999999999999   99986421   2367899999998876554 568


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      .+.|.++++||+|+.....||||||||++|+.|+++++|||||.......+..++++|||.+.......+..|+++.+++
T Consensus        72 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i  151 (240)
T 1mza_A           72 TLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTV  151 (240)
T ss_dssp             EEEEEEEEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEE
T ss_pred             EEEEEEEEeCCCccCCCCCceEEEEEeCCCcccCCceeeeecCCcccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEE
Confidence            89999999999999989999999999999999999999999998533337999999999998865523678999999999


Q ss_pred             eChhhhh--hhhhc--cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        261 LSNARCS--TVIEE--SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       261 ~~~~~C~--~~~~~--~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      ++.++|+  ..+..  .+++.||||+... +.++|+|                                           
T Consensus       152 ~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  188 (240)
T 1mza_A          152 LSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKG-------------------------------------------  188 (240)
T ss_dssp             CCHHHHTSTTTTTTTTCCCTTEEEEECTTSCCCCCTT-------------------------------------------
T ss_pred             eCHHHcCCcceeCCCCcCCCCeEeecCCCCCCccCCC-------------------------------------------
Confidence            9999998  55554  5789999999764 7899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEeccc-chhHHhhhhc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSE-YIRWIHVNAI  414 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~-~~~WI~~~~~  414 (417)
                                                 ||||||++  ++  +|+||+||| .+|+ .++.|+|||||+. |++||++++.
T Consensus       189 ---------------------------DSGGPL~~--~~--~l~Gi~S~g-~~C~-~~~~p~vyt~v~~~y~~WI~~~~~  235 (240)
T 1mza_A          189 ---------------------------DAGGPLIC--KG--VFHAIVSGG-HECG-VATKPGIYTLLTKKYQTWIKSNLV  235 (240)
T ss_dssp             ---------------------------CTTCEEEE--TT--EEEEEECSS-CCSS-CTTCCEEEEECCHHHHHHHHHHTC
T ss_pred             ---------------------------CCCCeeEE--CC--EEEEEEEEC-CCCC-CCCCCcEEEeChHHHHHHHHHhcc
Confidence                                       99999999  56  599999999 7999 6789999999999 9999999987


Q ss_pred             cC
Q psy15063        415 VT  416 (417)
Q Consensus       415 ~~  416 (417)
                      ..
T Consensus       236 ~~  237 (240)
T 1mza_A          236 PP  237 (240)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=8.3e-47  Score=354.69  Aligned_cols=226  Identities=25%  Similarity=0.438  Sum_probs=197.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEe
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRG  183 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~  183 (417)
                      |++|.+|.++   +|||+|+|. .++|+||||+++|||||   |||+.+..  .....+.|++|.++.....   .+.+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~CgGtLI~~~~VLTA---AhC~~~~~--~~~~~~~v~~g~~~~~~~~---~~~~~   69 (242)
T 3tvj_B            1 IYGGQKAKPG---DFPWQVLILGGTTAAGALLYDNWVLTA---AHAVYEQK--HDASALDIRMGTLKRLSPH---YTQAW   69 (242)
T ss_dssp             CBSCEECCTT---SSTTEEEEESSEEEEEEEETTTEEEEC---HHHHSTTT--TCSSCCEEEESCSBTTCSC---CEEEE
T ss_pred             CcCCeeCCCC---CCCCEEEEecCCcEEEEEecCCEEEEC---HHHCCCCC--CCcceEEEEeccccccCcc---cceee
Confidence            5788888888   499999994 56899999999999999   99997532  2447789999998876543   37788


Q ss_pred             eeEEEeCCCCCC-CCCCCCeEEEEecCCcCCCCceeeeeCCCCCCc--c-CCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        184 VRRVLFHSHFHP-FVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES--F-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       184 V~~i~iHP~Y~~-~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~--~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      |.++++||+|+. ....||||||||++|+.|+++++|||||.....  . .+..++++|||.+..+  ..+..|+++.++
T Consensus        70 v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~~~~--~~~~~l~~~~~~  147 (242)
T 3tvj_B           70 SEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG--FLARNLMYVDIP  147 (242)
T ss_dssp             EEEEEECTTCCTTSCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCCTTS--SCCSBCEEEEEE
T ss_pred             EEEEEeCCCCCCCCCCcCcEEEEEECCccccCCCEecCCcCCCcccccccCCCEEEEEEeCCCCCC--CcCccceEEeee
Confidence            999999999998 678899999999999999999999999987652  2 7899999999998753  478899999999


Q ss_pred             EeChhhhhhhhhc------cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        260 VLSNARCSTVIEE------SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       260 i~~~~~C~~~~~~------~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      +++..+|+..+..      .+++.||||+... +.++|+|                                        
T Consensus       148 i~~~~~C~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G----------------------------------------  187 (242)
T 3tvj_B          148 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRG----------------------------------------  187 (242)
T ss_dssp             BCCHHHHHHHHHSTTSCTTCCCTTEEEESCTTCCSBCCTT----------------------------------------
T ss_pred             EEcHHHHHHhhccCCcccccccCCeEEECCCCCCCccccC----------------------------------------
Confidence            9999999998765      3889999999766 7899999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                    ||||||++..  +++|+|+||+|||..+|+ ..+.|+|||||+.|++||+
T Consensus       188 ------------------------------DsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~-~~~~p~vyt~V~~y~~WI~  236 (242)
T 3tvj_B          188 ------------------------------DSGGALVFLDSETERWFVGGIVSWGSMNCG-EAGQYGVYTKVINYIPWIE  236 (242)
T ss_dssp             ------------------------------CTTCEEEEEETTTTEEEEEEEEEEEESSTT-CTTCCEEEEEGGGGHHHHH
T ss_pred             ------------------------------CCCCeEEEEeCCCCcEEEEEEEEeCCCCCC-CCCCCeEEEEHHHHHHHHH
Confidence                                          9999999974  789999999999977898 7789999999999999999


Q ss_pred             hhhc
Q psy15063        411 VNAI  414 (417)
Q Consensus       411 ~~~~  414 (417)
                      +++.
T Consensus       237 ~~i~  240 (242)
T 3tvj_B          237 NIIS  240 (242)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=3.4e-47  Score=385.01  Aligned_cols=237  Identities=29%  Similarity=0.467  Sum_probs=203.9

Q ss_pred             CCCccccccceeEecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEE
Q psy15063         92 SCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVL  164 (417)
Q Consensus        92 ~CG~~~~~~~~~~~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V  164 (417)
                      .|| ..   ...+|++|.+|.++   +|||+|+|.       .++|+||||+++|||||   |||+.+.    ....+.|
T Consensus       110 ~CG-~~---~~~rIvgG~~a~~~---e~Pw~v~L~~~~~g~~~~~CGGsLIs~~~VLTA---AHCv~~~----~~~~~~V  175 (408)
T 2xxl_A          110 DCG-NF---LSQRVSNGYEVKLS---SRPWMALLRYQQFGESRFLCGGAMISERYILTA---AHCVHGL----QNDLYEI  175 (408)
T ss_dssp             CCS-CC---CCCCCCSSCBCCTT---SSTTEEEEEEECSSSEEEEEEEEEEETTEEEEC---GGGTTTC----TTTEEEE
T ss_pred             ccC-CC---CCCceECCEECCCC---CCCcEEEEEeecCCceeEEEEEEEEECCEEEEc---HHhcCCC----CCceEEE
Confidence            799 22   24578999999988   599999984       35899999999999999   9999653    2367899


Q ss_pred             EeceecCCCCCC-----------CCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCC----cc
Q psy15063        165 HLGDHDLTQLNE-----------TSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE----SF  229 (417)
Q Consensus       165 ~lG~~~~~~~~~-----------~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~----~~  229 (417)
                      ++|.+++....+           ...+.+.|+++++||+|+..+..||||||||++|+.|+++|+|||||....    ..
T Consensus       176 ~lG~~~~~~~~~~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~~~~~~  255 (408)
T 2xxl_A          176 RLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAE  255 (408)
T ss_dssp             EESCSBTTCSCCEEEETTEEEECCCCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCSHHHHHHTT
T ss_pred             EeeeeECCCccchhhcccccccCCceEEEeEEEEEeCCCCCccccccceEEEEECCccccccCccccCCCCccccccccc
Confidence            999998765432           246788999999999999989999999999999999999999999998653    22


Q ss_pred             CCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCccccccccccccc
Q psy15063        230 IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQ  309 (417)
Q Consensus       230 ~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~  309 (417)
                      .+..++++|||.+..+.  .+..|+++.++++++++|+..|...+...||||+...++++|+|                 
T Consensus       256 ~~~~~~v~GWG~t~~~~--~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~iCAg~~~g~d~C~G-----------------  316 (408)
T 2xxl_A          256 QISTYFVTGWGTTENGS--SSDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSCKG-----------------  316 (408)
T ss_dssp             TCSEEEEEECCCBTTBC--SCSBCEEEEEEEECHHHHHHHHTSCCCTTEEEECCSCSSSGGGS-----------------
T ss_pred             CCCEEEEEEeCcCCCCC--CCchheEeeeeecCHHHHHHHhcccCCCceEeecCCCCCccCCC-----------------
Confidence            68899999999987644  68899999999999999999887656779999998778899999                 


Q ss_pred             CccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceE------EeeCCeEEEEeEEE
Q psy15063        310 GTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT------FEQDGYHVLAGIVS  383 (417)
Q Consensus       310 ~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~------~~~~g~~~l~GI~S  383 (417)
                                                                           ||||||+      +..+++|+|+||+|
T Consensus       317 -----------------------------------------------------DSGGPL~~~~~~~~~~~~~~~l~GIvS  343 (408)
T 2xxl_A          317 -----------------------------------------------------DSGGPLQAPAQYLGEYAPKMVEFGIVS  343 (408)
T ss_dssp             -----------------------------------------------------CTTCEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             -----------------------------------------------------cccChhhcCccceEEECCEEEEEEEEE
Confidence                                                                 9999994      44467999999999


Q ss_pred             EcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        384 YGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       384 ~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                      ||..+|+ ..+.|+|||||+.|++||++++..
T Consensus       344 ~G~~~Cg-~~~~PgVYTrVs~y~~WI~~~i~~  374 (408)
T 2xxl_A          344 QGVVTCG-QISLPGLYTNVGEYVQWITDTMAS  374 (408)
T ss_dssp             ECCCCTT-SCCCCEEEEEGGGGHHHHHHHHHH
T ss_pred             ECCCCCC-CCCCCeEEEEHHHHHHHHHHHHhh
Confidence            9977899 778899999999999999998853

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=9.9e-47  Score=352.35  Aligned_cols=219  Identities=29%  Similarity=0.494  Sum_probs=190.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|+|.      .++|+||||+++|||||   |||+.        ..+.|++|.+++...+. .
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~   65 (227)
T 1euf_A            1 IIGGHEAKPH---SRPYMAFLLFKTSGKSHICGGFLVREDFVLTA---AHCLG--------SSINVTLGAHNIMERER-T   65 (227)
T ss_dssp             CBSCEECCTT---SCTTEEEEEEESSSSEEEEEEEEEETTEEEEC---GGGCC--------EEEEEEESCSBTTSCCT-T
T ss_pred             CCCCeECCCC---CcCCEEEEEEeCCCCceEEEEEEeeCCEEEEC---HHHCC--------CCcEEEEcccccCCCCC-c
Confidence            5788888888   499999994      36899999999999999   99995        35889999998876544 5


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|.++++||+|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++.
T Consensus        66 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~  144 (227)
T 1euf_A           66 QQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNM-PSTDKLQEVD  144 (227)
T ss_dssp             CEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTC-CBCSBCEEEE
T ss_pred             cEEEEEEEEEeCCCCCCCCCcCceEEEEECCcCcCCCceeccCCCCccccCCCCCEEEEEEEccCCCCC-CCchhheEeE
Confidence            788999999999999999999999999999999999999999999876543 78999999999987554 5678999999


Q ss_pred             EEEeChhhhhhhhhccCCCCeEEecCCCC-CCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        258 VKVLSNARCSTVIEESIGIGMLCAAPDET-QGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       258 v~i~~~~~C~~~~~~~~~~~~iCa~~~~~-~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +++++.++|+..+...+.+.||||+...+ ...|+|                                            
T Consensus       145 ~~i~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~~~G--------------------------------------------  180 (227)
T 1euf_A          145 LEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSG--------------------------------------------  180 (227)
T ss_dssp             EEBCCTHHHHTTCTTCCTTTEEEESCTTSCCBCCTT--------------------------------------------
T ss_pred             eccccHHHhhHhhcCcCCCcEEEccCCCCCCccccc--------------------------------------------
Confidence            99999999999887678899999997653 677899                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                                ||||||++  ++  +|+||+|||   |+ ..+.|+|||||+.|++||+++|...
T Consensus       181 --------------------------DsGgPL~~--~~--~l~Gi~S~g---c~-~~~~p~vyt~V~~y~~WI~~~~~~~  226 (227)
T 1euf_A          181 --------------------------DSGGPLVC--NG--VAQGIVSYG---RN-DGTTPDVYTRISSFLSWIHSTMRRY  226 (227)
T ss_dssp             --------------------------CTTCEEEE--TT--EEEEEEEEC---CT-TCCSCEEEEEGGGTHHHHHHHTC--
T ss_pred             --------------------------CCCCceEE--CC--EEEEEEEEe---CC-CCCCCeEEEEHHHhHHHHHHHHhhc
Confidence                                      99999999  56  599999998   76 5678999999999999999999865


Q ss_pred             C
Q psy15063        417 K  417 (417)
Q Consensus       417 ~  417 (417)
                      |
T Consensus       227 k  227 (227)
T 1euf_A          227 K  227 (227)
T ss_dssp             -
T ss_pred             C
Confidence            5

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=8.2e-47  Score=354.87  Aligned_cols=220  Identities=27%  Similarity=0.485  Sum_probs=193.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.        ..+.|++|.+++...+. ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLI~~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~~~~   65 (237)
T 1ao5_A            1 VVGGFNCEKN---SQPWQVAVYYQKEHICGGVLLDRNWVLTA---AHCYV--------DQYEVWLGKNKLFQEEP-SAQH   65 (237)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEEEETTEEEEC---TTCCC--------SSCEEEESCCBSSSCCS-SCEE
T ss_pred             CCCCeECCCC---CcCCEEEEeeCCCeEEEEEEeeCCEEEEC---HHHCC--------CCCEEEecccccccCCC-CcEE
Confidence            5788888887   599999995   46999999999999999   99994        35789999998865544 5688


Q ss_pred             EeeeEEEeCCCCCCCCC-----------CCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCC
Q psy15063        182 RGVRRVLFHSHFHPFVL-----------SNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPS  250 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~-----------~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~  250 (417)
                      +.|.++++||+|+....           .||||||||++|+.|+++++|||||..... .+..++++|||.+.......+
T Consensus        66 ~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~-~~~~~~v~GwG~~~~~~~~~~  144 (237)
T 1ao5_A           66 RLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPK-PGSKCLASGWGSITPTRWQKP  144 (237)
T ss_dssp             CCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCCC-TTCEEEEEESCCSSCC-CCCC
T ss_pred             EEEEEEEcCCCcCcccccccccccccCCCCCEEEEEeCCccccCCceeCCCcCCCCCC-CCCEEEEEECCccCCCCCCCC
Confidence            88999999999997766           899999999999999999999999987654 799999999999886643578


Q ss_pred             ccceEEEEEEeChhhhhhhhhccCCCCeEEecC-CCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccc
Q psy15063        251 PTLQKLEVKVLSNARCSTVIEESIGIGMLCAAP-DETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIG  329 (417)
Q Consensus       251 ~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~-~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~  329 (417)
                      ..|+++.+++++.++|+..+...+++.||||+. ..+.++|+|                                     
T Consensus       145 ~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------  187 (237)
T 1ao5_A          145 DDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRD-------------------------------------  187 (237)
T ss_dssp             SBCEEEEEEEECHHHHHHHCSSCCCTTEEEEECTTCSCBCCTT-------------------------------------
T ss_pred             CcccEEEEEecChhHhhhhhcccCCCCEEEEccCCCCCCCCCC-------------------------------------
Confidence            899999999999999999887778999999984 347899999                                     


Q ss_pred             cCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        330 EFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       330 ~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                                                       ||||||++  ++  +|+||+|||..+|+ .++.|+|||||+.|++||
T Consensus       188 ---------------------------------DSGgPL~~--~~--~l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI  229 (237)
T 1ao5_A          188 ---------------------------------DSGGPLIC--DG--ILQGTTSYGPVPCG-KPGVPAIYTNLIKFNSWI  229 (237)
T ss_dssp             ---------------------------------CTTCEEEE--TT--EEEEEEEECCSSTT-CTTCCEEEECGGGGHHHH
T ss_pred             ---------------------------------CCcceEEE--CC--EEeEEEeEcCCCCC-CCCCCcEEEEHHHHHHHH
Confidence                                             99999999  66  49999999966899 678999999999999999


Q ss_pred             hhhhcc
Q psy15063        410 HVNAIV  415 (417)
Q Consensus       410 ~~~~~~  415 (417)
                      ++++..
T Consensus       230 ~~~~~~  235 (237)
T 1ao5_A          230 KDTMMK  235 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998863

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=6e-47  Score=353.68  Aligned_cols=221  Identities=29%  Similarity=0.519  Sum_probs=195.5

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+      ...+.|++|.+++...+. ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLI~~~~VLTA---AHC~~~------~~~~~v~~G~~~~~~~~~-~~~~   67 (226)
T 1azz_A            1 IVGGVEAVPN---SWPHQAALFIDDMYFCGGSLISPEWILTA---AHCMDG------AGFVDVVLGAHNIREDEA-TQVT   67 (226)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTTEEEEEEEEETTEEEEC---HHHHTT------CSCEEEEESCSBSSSCCT-TCEE
T ss_pred             CCCCEECCCC---CcCCEEEEEECCcEEEEEEEecCCEEEEh---HHhcCC------CCceEEEEcceEcCCCCC-ccEE
Confidence            5788888888   499999995   46999999999999999   999964      267899999998876554 5688


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      +.|.++++||+|+.....||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.++++
T Consensus        68 ~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~  146 (226)
T 1azz_A           68 IQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVG-VGTVVTPTGWGLPSDSALGISDVLRQVDVPIM  146 (226)
T ss_dssp             EEECCEEECTTCBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCCC-TTCEEEEEESSCSSTTCSSSCSBCEECCEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCceEEEEECCccccCCCcccccCCCCCCC-CCCEEEEEeCCccCCCCCCCCchhEEeeEEEE
Confidence            89999999999999889999999999999999999999999987653 78999999999987654356889999999999


Q ss_pred             ChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        262 SNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       262 ~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      ++++|+..+. .+.+.||||+...+.++|+|                                                 
T Consensus       147 ~~~~C~~~~~-~~~~~~~Ca~~~~~~~~C~G-------------------------------------------------  176 (226)
T 1azz_A          147 SNADCDAVYG-IVTDGNICIDSTGGKGTCNG-------------------------------------------------  176 (226)
T ss_dssp             CHHHHHHHHS-CCCTTEEEECCTTTCBCCTT-------------------------------------------------
T ss_pred             ChhHhhhhhC-cCCCceEeecCCCCCccCCC-------------------------------------------------
Confidence            9999999886 68899999987668899999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                           ||||||++  ++  +|+||+|||. .+|+  .+.|+|||||+.|++||+++++.+
T Consensus       177 ---------------------DSGgPL~~--~~--~l~Gi~S~g~~~~C~--~~~p~vyt~V~~~~~WI~~~~~~~  225 (226)
T 1azz_A          177 ---------------------DSGGPLNY--NG--LTYGITSFGAAAGCE--AGYPDAFTRVTYFLDWIQTQTGIT  225 (226)
T ss_dssp             ---------------------CTTCEEEE--TT--EEEEEEEEEETTCTT--SCCCEEEEESGGGHHHHHHHHCCC
T ss_pred             ---------------------CCCcceEE--CC--EEEEEEEEECCCCCC--CCCCCEEEEHHHHHHHHHHHhCCC
Confidence                                 99999997  66  5999999994 2898  688999999999999999999865

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=1.3e-46  Score=353.10  Aligned_cols=220  Identities=29%  Similarity=0.460  Sum_probs=193.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEe
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRG  183 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~  183 (417)
                      |++|.+|.++   +|||+|+|. .++|+||||+++|||||   |||+.        ..+.|++|.+++...+. ..+.+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~CgGsLIs~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~~~~~~   65 (235)
T 1ton_A            1 IVGGYKCEKN---SQPWQVAVINEYLCGGVLIDPSWVITA---AHCYS--------NNYQVLLGRNNLFKDEP-FAQRRL   65 (235)
T ss_dssp             CBSCEECCTT---SCTTEEEEESSSEEEEEEEETTEEEEC---GGGCC--------SCCEEEESCSBTTSCCT-TCEEEC
T ss_pred             CCCCEECCCC---CcCcEEEEccCCeEEEEEecCCEEEEc---HHhCC--------CCcEEEeCcccccCCCC-cceEEE
Confidence            5788888877   599999995 37999999999999999   99994        45789999998765444 568889


Q ss_pred             eeEEEeCCCCCC-----------CCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCcc
Q psy15063        184 VRRVLFHSHFHP-----------FVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPT  252 (417)
Q Consensus       184 V~~i~iHP~Y~~-----------~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~  252 (417)
                      |.++++||+|+.           ....||||||||++|+.|+++++|||||..... .+..|+++|||.+.......+..
T Consensus        66 v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~  144 (235)
T 1ton_A           66 VRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPK-VGSTCLASGWGSTNPSEMVVSHD  144 (235)
T ss_dssp             EEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCCC-TTCEEEEEESSCSSSSSCCCCSB
T ss_pred             EEEEEeCCCCcccccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCCCCCC-CCCEEEEEecCCCCCCCCccCcc
Confidence            999999999987           677899999999999999999999999987644 79999999999987654356889


Q ss_pred             ceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccC
Q psy15063        253 LQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEF  331 (417)
Q Consensus       253 L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~  331 (417)
                      |+++.++++++++|+..+...+++.||||+... +.++|+|                                       
T Consensus       145 L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G---------------------------------------  185 (235)
T 1ton_A          145 LQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAG---------------------------------------  185 (235)
T ss_dssp             CEEEEEEEECGGGCGGGGSTTGGGGEEEEECTTCSCBCCTT---------------------------------------
T ss_pred             ceEEEEEEeCHHHHHHHhcCcCCCCeEeeccCCCCCcCCCC---------------------------------------
Confidence            999999999999999988767889999999754 7899999                                       


Q ss_pred             CcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhh
Q psy15063        332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       332 p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                                                     ||||||++  ++  +|+||+|||..+|+ .++.|+|||||+.|++||++
T Consensus       186 -------------------------------DSGgPL~~--~~--~l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI~~  229 (235)
T 1ton_A          186 -------------------------------DSGGPLIC--DG--VLQGITSGGATPCA-KPKTPAIYAKLIKFTSWIKK  229 (235)
T ss_dssp             -------------------------------CTTCEEEE--TT--EEEEEECCCCSSCS-CTTCCEEEEEGGGGHHHHHH
T ss_pred             -------------------------------CCccccEE--CC--EEEEEEeeCCCCCC-CCCCCeEEEEHHHHHHHHHH
Confidence                                           99999999  66  49999999966898 67899999999999999999


Q ss_pred             hhcc
Q psy15063        412 NAIV  415 (417)
Q Consensus       412 ~~~~  415 (417)
                      +++.
T Consensus       230 ~~~~  233 (235)
T 1ton_A          230 VMKE  233 (235)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            8864

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=1.1e-46  Score=354.03  Aligned_cols=221  Identities=28%  Similarity=0.468  Sum_probs=192.5

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+        ...|++|.+++...+. ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGsLIs~~~VLTA---AHC~~~--------~~~v~~G~~~~~~~~~-~~~~   65 (237)
T 2zch_P            1 IVGGWECEKH---SQPWQVLVASRGRAVCGGVLVHPQWVLTA---AHCIRN--------KSVILLGRHSLFHPED-TGQV   65 (237)
T ss_dssp             CBSCEECCTT---SCTTEEEEESSSSEEEEEEEEETTEEEEC---GGGCCS--------SCEEEESCSBSSSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCCEEEEeeCCCeEEEEEEecCCEEEEc---HHhcCC--------CceEEEecccccCCCC-CcEE
Confidence            5788889888   499999995   45899999999999999   999964        2479999998876554 5688


Q ss_pred             EeeeEEEeCCCCCCCCC-----------CCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCC
Q psy15063        182 RGVRRVLFHSHFHPFVL-----------SNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPS  250 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~-----------~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~  250 (417)
                      +.|+++++||+|+....           .||||||||++|+.|+++++|||||..... .+..++++|||.+.......+
T Consensus        66 ~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~~~~-~~~~~~v~GwG~~~~~~~~~~  144 (237)
T 2zch_P           66 FQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPA-LGTTCYASGWGSIEPEEFLTP  144 (237)
T ss_dssp             EEEEEEEECTTSCGGGGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSSCCC-TTCEEEEEESCCSSSSSCCCC
T ss_pred             EEEEEEecCCCcchhhhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCCCCCC-CCCEEEEEeCCccCCCCCcCC
Confidence            99999999999987665           789999999999999999999999987544 789999999999876552347


Q ss_pred             ccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccc
Q psy15063        251 PTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIG  329 (417)
Q Consensus       251 ~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~  329 (417)
                      ..|+++.++++++++|+..+...+++.||||+... +.++|+|                                     
T Consensus       145 ~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------  187 (237)
T 2zch_P          145 KKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSG-------------------------------------  187 (237)
T ss_dssp             SBCEEEEEEEECHHHHHHHCSSBCCTTEEEEECTTCSCBCCTT-------------------------------------
T ss_pred             cccEEeEEEEeCHHHhcccccCCCCceEEeecCCCCCCcccCC-------------------------------------
Confidence            89999999999999999988777899999999765 7899999                                     


Q ss_pred             cCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        330 EFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       330 ~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                                                       ||||||++  ++  +|+||+|||..+|+ ..+.|+|||||+.|++||
T Consensus       188 ---------------------------------DSGgPL~~--~~--~l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI  229 (237)
T 2zch_P          188 ---------------------------------DSGGPLVC--NG--VLQGITSWGSEPCA-LPERPSLYTKVVHYRKWI  229 (237)
T ss_dssp             ---------------------------------CTTCEEES--SS--SEEEEEEECCSSTT-CTTCCEEEEEGGGGHHHH
T ss_pred             ---------------------------------CccCeEEE--CC--EEEEEEEeCcCCCC-CCCCCcEEEEHHHHHHHH
Confidence                                             99999998  44  59999999944898 678999999999999999


Q ss_pred             hhhhccC
Q psy15063        410 HVNAIVT  416 (417)
Q Consensus       410 ~~~~~~~  416 (417)
                      ++++...
T Consensus       230 ~~~i~~~  236 (237)
T 2zch_P          230 KDTIVAN  236 (237)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9998653

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=1.3e-46  Score=351.36  Aligned_cols=217  Identities=28%  Similarity=0.419  Sum_probs=190.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|+|..      ++|+||||+++|||||   |||+.        ..+.|++|.+++...+. .
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~   65 (227)
T 1iau_A            1 IIGGHEAKPH---SRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTA---AHCWG--------SSINVTLGAHNIKEQEP-T   65 (227)
T ss_dssp             CBTCEECCTT---SSTTEEEEEEECSSCEEEEEEEEEETTEEEEC---GGGCC--------SEEEEEESCSBTTSCCT-T
T ss_pred             CCCCeECCCC---CcCcEEEEEEECCCCceEEEEEEEcCCEEEEC---HHhCC--------CceEEEEccccccCCCC-c
Confidence            5788888888   4999999942      6899999999999999   99995        34889999998876554 6


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|+++++||+|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++.
T Consensus        66 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~-~~~~~L~~~~  144 (227)
T 1iau_A           66 QQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG-KHSHTLQEVK  144 (227)
T ss_dssp             CEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSSSS-CCCSBCEEEE
T ss_pred             cEEEEEEEEECCCCCCCCCCCCCeEEEEECCcccCCCceecccCCCCCCCCCCCCEEEEEEcccCCCCC-CcCceeeEee
Confidence            788999999999999999999999999999999999999999999876644 78999999999987544 5788999999


Q ss_pred             EEEeChhhhhhhhhccC-CCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        258 VKVLSNARCSTVIEESI-GIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       258 v~i~~~~~C~~~~~~~~-~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      +++++..+|+..+...+ .+.||||+... +.++|+|                                           
T Consensus       145 ~~i~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  181 (227)
T 1iau_A          145 MTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKG-------------------------------------------  181 (227)
T ss_dssp             EEBCCHHHHHHHTTTTCCTTTEEEESCTTSCCBCCTT-------------------------------------------
T ss_pred             eeeechHHhhhHhccccCCCcEEEeECCCCCCeeeec-------------------------------------------
Confidence            99999999998876544 44599999876 7899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                 ||||||++  ++  +|+||+|||   |+ ..+.|+|||||+.|++||+++++.
T Consensus       182 ---------------------------DSGgPL~~--~~--~l~Gi~S~g---c~-~~~~p~vyt~v~~~~~WI~~~~~~  226 (227)
T 1iau_A          182 ---------------------------DSGGPLVC--NK--VAQGIVSYG---RN-NGMPPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             ---------------------------CTTSEEEE--TT--EEEEEEEEE---CT-TSCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             ---------------------------CCCchheE--ee--EEEEEEeEe---cC-CCCCCeEEEEHHHHHHHHHHHHhh
Confidence                                       99999999  56  599999998   76 567899999999999999998863

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-46  Score=352.59  Aligned_cols=220  Identities=26%  Similarity=0.411  Sum_probs=193.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.        ..+.|++|.+++...+. ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGsLIs~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~~~~   65 (238)
T 1spj_A            1 IVGGWECEQH---SQPWQAALYHFSTFQCGGILVHRQWVLTA---AHCIS--------DNYQLWLGRHNLFDDEN-TAQF   65 (238)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCC--------SSEEEEESCSBTTSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEeCCCeeEEEEEecCCEEEEc---HHhCC--------CCceEEEEeccccCCCC-CceE
Confidence            5788888888   499999995   35899999999999999   99995        34789999998876554 6688


Q ss_pred             EeeeEEEeCCCCC-----------CCCCCCCeEEEEecCCcC-CCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCC
Q psy15063        182 RGVRRVLFHSHFH-----------PFVLSNDIALLQLDRPVP-LTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEP  249 (417)
Q Consensus       182 ~~V~~i~iHP~Y~-----------~~~~~nDIALLkL~~pv~-~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~  249 (417)
                      +.|.++++||+|+           .....||||||||++|+. |+++++|||||..... .+..++++|||.+.......
T Consensus        66 ~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~~~-~~~~~~v~GwG~~~~~~~~~  144 (238)
T 1spj_A           66 VHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPE-VGSTCLASGWGSIEPENFSF  144 (238)
T ss_dssp             ECEEEEEECTTSCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSCCC-TTCEEEEEESSCSSSSSCCC
T ss_pred             EEEEEEEcCCCccccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCCCC-CCCEEEEEecCCCCCCCCCC
Confidence            8999999999998           456789999999999999 9999999999987654 78999999999987655356


Q ss_pred             CccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccccc
Q psy15063        250 SPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADI  328 (417)
Q Consensus       250 ~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~  328 (417)
                      +..|+++.++++++++|+..+...+++.||||+... +.++|+|                                    
T Consensus       145 ~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G------------------------------------  188 (238)
T 1spj_A          145 PDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVG------------------------------------  188 (238)
T ss_dssp             CSBCEEEEEEEECHHHHHHHCSSCCCTTEEEEECTTCSSBCCTT------------------------------------
T ss_pred             cCcccEEEEeecCHHHhhhhccCCCCCCeEEeeCCCCCCCCCCC------------------------------------
Confidence            789999999999999999988767899999999755 7899999                                    


Q ss_pred             ccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhH
Q psy15063        329 GEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRW  408 (417)
Q Consensus       329 ~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~W  408 (417)
                                                        ||||||++  ++  +|+||+|||..+|+ .++.|+|||||+.|++|
T Consensus       189 ----------------------------------DSGgPL~~--~~--~l~Gi~S~g~~~C~-~~~~p~vyt~V~~y~~W  229 (238)
T 1spj_A          189 ----------------------------------DSGGPLMC--DG--VLQGVTSWGYVPCG-TPNKPSVAVRVLSYVKW  229 (238)
T ss_dssp             ----------------------------------CTTCEEEE--TT--EEEEEEEECCSSTT-CTTCCEEEEEGGGGHHH
T ss_pred             ----------------------------------CCCCcEEE--cC--EEEEEEEeCCCCCC-CCCCCeEEEEHHHhHHH
Confidence                                              99999999  55  59999999966898 67899999999999999


Q ss_pred             Hhhhhcc
Q psy15063        409 IHVNAIV  415 (417)
Q Consensus       409 I~~~~~~  415 (417)
                      |+++|..
T Consensus       230 I~~~i~~  236 (238)
T 1spj_A          230 IEDTIAE  236 (238)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            9998864

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=1.8e-46  Score=349.05  Aligned_cols=219  Identities=25%  Similarity=0.481  Sum_probs=195.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc--cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR--QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~--~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.+|.++   +|||+|++.  .++|+||||+++|||||   |||+.        ..+.|++|.+++..... ..+.+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~C~GtLI~~~~VLTA---AhC~~--------~~~~v~~g~~~~~~~~~-~~~~~   65 (223)
T 4i8h_A            1 IVGGYTCGAN---TVPYQVSLNSGYHFCGGSLINSQWVVSA---AHCYK--------SGIQVRLGEDNINVVEG-NEQFI   65 (223)
T ss_dssp             CBSCEECCTT---SSTTEEEEESSSEEEEEEECSSSEEEEC---GGGCC--------SSCEEEESCSSTTSCCS-CCEEE
T ss_pred             CCCCEECCCC---CCCeEEEecCCCcEEEEEEEcCCEEEec---HHhCC--------CCcEEEEccccccccCC-CcEEE
Confidence            5788888888   499999994  45899999999999999   99985        35789999998875555 66888


Q ss_pred             eeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeC
Q psy15063        183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLS  262 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~  262 (417)
                      .|.++++||+|+..+..||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.+++++
T Consensus        66 ~v~~~~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~  144 (223)
T 4i8h_A           66 SASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS  144 (223)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCCC-TTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCC
T ss_pred             EEeEEEECcCCCCCCCcCCEEEEEECCcCcCCCceeceECCCCCCC-CCCEEEEEecccccCCCCCccccceEEEeeecC
Confidence            9999999999999999999999999999999999999999987644 899999999999886554567889999999999


Q ss_pred             hhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        263 NARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       263 ~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      .++|+..+...+.+.||||+... +.++|+|                                                 
T Consensus       145 ~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------------  175 (223)
T 4i8h_A          145 DSSCKSAYPGQITSNMFCAGYLEGGKDSCQG-------------------------------------------------  175 (223)
T ss_dssp             HHHHHHHSTTTCCTTEEEESCTTSSCBCCTT-------------------------------------------------
T ss_pred             HHHHHHhhCCCCCCCeEeccCCCCCCccCCC-------------------------------------------------
Confidence            99999998878999999998655 8899999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                           ||||||++  ++  +|+||+||| .+|+ ..+.|++||||+.|++||+++|..
T Consensus       176 ---------------------DsGgPl~~--~~--~l~Gi~S~g-~~c~-~~~~p~vyt~v~~~~~WI~~~i~~  222 (223)
T 4i8h_A          176 ---------------------DSGGPVVC--SG--KLQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             ---------------------CTTCEEEE--TT--EEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             ---------------------CCCCcEEE--CC--EEEEEEEcC-CCCC-CCCCCeEEEEHHHHHHHHHHHHhc
Confidence                                 99999999  55  499999999 8898 788999999999999999999863

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=2.3e-46  Score=349.33  Aligned_cols=219  Identities=27%  Similarity=0.490  Sum_probs=192.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc--c-cceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ--D-VCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~--~-~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|..  + +|+||||+++|||||   |||+.        ..+.|++|.+++...   ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLI~~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~---~~~~   63 (224)
T 2qxi_A            1 IIDGAPCARG---SHPWQVALLSGNQLHCGGVLVNERWVLTA---AHCKM--------NEYTVHLGSDTLGDR---RAQR   63 (224)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCC--------SCEEEEESCSBTTCT---TSEE
T ss_pred             CCCCeECCCC---CCCCEEEEeeCCCeEEEEEEecCCEEEEh---HHcCC--------CCcEEEEeeeecCCC---ccEE
Confidence            5788888887   5999999942  3 899999999999999   99983        458899999887532   4588


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      +.|.++++||+|+..+..||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.++++
T Consensus        64 ~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~  142 (224)
T 2qxi_A           64 IKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEP-PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLI  142 (224)
T ss_dssp             EEECEEEECTTCCTTTCTTCCEEEECSSCCCCBTTBCCCCCCSSCCC-TTCEEEEEESSCSSSSSCCCCSBCEEEEEEEE
T ss_pred             EEEEEEEECCCCCCCCCcCcEEEEEeCCCCcCCCceeeEECCCCCCC-CCCEEEEEeCCccCCCCCCCChhheEEEeeec
Confidence            89999999999999999999999999999999999999999987654 79999999999986443356789999999999


Q ss_pred             ChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccC
Q psy15063        262 SNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALD  340 (417)
Q Consensus       262 ~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~  340 (417)
                      +.++|+..+...+.+.||||+... +.++|+|                                                
T Consensus       143 ~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G------------------------------------------------  174 (224)
T 2qxi_A          143 SPQDCTKVYKDLLENSMLCAGIPDSKKNACNG------------------------------------------------  174 (224)
T ss_dssp             CHHHHHHHHGGGCCTTEEEEECTTCCCBCCTT------------------------------------------------
T ss_pred             CHHHhhHHhcCcCCCCeEEecCCCCCCccCCC------------------------------------------------
Confidence            999999988777899999999755 7899999                                                


Q ss_pred             CeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        341 GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       341 ~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                            ||||||++  ++.  |+||+|||..+|+ .++.|+|||||+.|++||++++...
T Consensus       175 ----------------------DSGgPL~~--~~~--l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI~~~~~~~  223 (224)
T 2qxi_A          175 ----------------------DSGGPLVC--RGT--LQGLVSWGTFPCG-QPNDPGVYTQVCKFTKWINDTMKKH  223 (224)
T ss_dssp             ----------------------CTTCEEEE--TTE--EEEEEEECCSSSC-CTTCCEEEEEGGGSHHHHHHHHHHT
T ss_pred             ----------------------CccccEEE--CCE--EEEEEEeCCCCCC-CCCCCeEEEEHHHHHHHHHHHHhcc
Confidence                                  99999999  664  9999999966898 6789999999999999999998653

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=2.1e-46  Score=351.57  Aligned_cols=221  Identities=24%  Similarity=0.459  Sum_probs=191.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.++.++   +|||+|+|.   .++|+||||+++|||||   |||+.+       ..+.|++|.+++...+. ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AHC~~~-------~~~~v~~G~~~~~~~~~-~~~~   66 (234)
T 1orf_A            1 IIGGNEVTPH---SRPYMVLLSLDRKTICAGALIAKDWVLTA---AHCNLN-------KRSQVILGAHSITREEP-TKQI   66 (234)
T ss_dssp             CBSCEECCTT---SSTTEEEEECSSSCEEEEEEEETTEEEEC---TTCCCC-------TTCEEEESCSBSSSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCeEEEEccCCceEEEEEEeeCCEEEEc---hhcCCC-------CCceEEEeccccCcCCC-ceEE
Confidence            5788888887   599999995   46999999999999999   999964       45789999998876554 5688


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.|.++++||+|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++.+++
T Consensus        67 ~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~  145 (234)
T 1orf_A           67 MLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSA-SWSDTLREVEITI  145 (234)
T ss_dssp             ECEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSS-CCCSBCEEEEEEE
T ss_pred             EEEEEEEcCCCCCCCCCCCCEEEEEECCcCccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCC-CccccceEeEEEe
Confidence            999999999999999999999999999999999999999999876643 78999999999987654 5678999999999


Q ss_pred             eChhhhh--hhhh--ccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        261 LSNARCS--TVIE--ESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       261 ~~~~~C~--~~~~--~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      ++.++|+  ..+.  ..+.+.||||+... +.++|+|                                           
T Consensus       146 ~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  182 (234)
T 1orf_A          146 IDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNG-------------------------------------------  182 (234)
T ss_dssp             ECHHHHTSTTTTTTTTCCCTTEEEEECSSCCCBCCTT-------------------------------------------
T ss_pred             eCHHHcCCccccccCCccCCCEEEecCCCCCCcCCCC-------------------------------------------
Confidence            9999998  4342  13344999999764 7899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecc-cchhHHhhhh
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVS-EYIRWIHVNA  413 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs-~~~~WI~~~~  413 (417)
                                                 ||||||++  ++  +|+||+|||. .+|+ .++.|+|||||+ .|++||++++
T Consensus       183 ---------------------------DSGgPL~~--~~--~l~GI~S~g~~~~C~-~~~~p~vyt~v~~~~~~WI~~~~  230 (234)
T 1orf_A          183 ---------------------------DSGSPLLC--EG--VFRGVTSFGLENKCG-DPRGPGVYILLSKKHLNWIIMTI  230 (234)
T ss_dssp             ---------------------------CTTCEEEE--TT--EEEEEEEECCTTCTT-CTTSCEEEEECCHHHHHHHHHHH
T ss_pred             ---------------------------CCCCeEEE--CC--EEEEEEEEcCCCCCC-CCCCCCEEEEchHHHHHHHHHHH
Confidence                                       99999999  56  5999999994 3899 678999999999 9999999988


Q ss_pred             cc
Q psy15063        414 IV  415 (417)
Q Consensus       414 ~~  415 (417)
                      ..
T Consensus       231 ~~  232 (234)
T 1orf_A          231 KG  232 (234)
T ss_dssp             CC
T ss_pred             Hh
Confidence            63

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=2.1e-46  Score=352.82  Aligned_cols=224  Identities=25%  Similarity=0.456  Sum_probs=194.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|++..      ++|+||||+++|||||   |||+.+.    .+..+.|++|.+++....  .
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTA---AHC~~~~----~~~~~~v~~G~~~~~~~~--~   68 (241)
T 1m9u_A            1 VIGGTNASPG---EFPWQLSQQRQSGSWSHSCGASLLSSTSALSA---SHCVDGV----LPNNIRVIAGLWQQSDTS--G   68 (241)
T ss_dssp             CBTCEECCTT---SSTTEEEEEEESSSEEEEEEEEECSSSEEEEC---HHHHTTC----CGGGEEEEESCSBTTCCT--T
T ss_pred             CCCCeECCCC---CcCeEEEEEecCCceeeeeEEEEEeCCEEEec---HHhCCCC----CcceEEEEEEeecCCCCC--C
Confidence            5788888887   5999999842      6899999999999999   9999653    457899999999876532  4


Q ss_pred             cEEEeeeEEEeCCCC--CCCCCCCCeEEEEecCCcCCCCceeeeeCCCC-CCccCCCeEEEEEcCccCCCCCCCCccceE
Q psy15063        179 HVRRGVRRVLFHSHF--HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK-GESFIGKRGHVVGWGVTSFPMGEPSPTLQK  255 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y--~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~-~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~  255 (417)
                      .+.+.|.++++||+|  +.....||||||||++|+.|+++++|||||.. .....+..++++|||.+.... ..+..|++
T Consensus        69 ~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~  147 (241)
T 1m9u_A           69 TQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTN-NLPDILQK  147 (241)
T ss_dssp             CEEEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSS-CCCSBCEE
T ss_pred             ceEEEEEEEEeCCCcCCCCCcccccEEEEEecCccccCCCccccCcCCCcCCCCCCCEEEEEeCcccCCCC-CcccceeE
Confidence            688899999999999  77788999999999999999999999999987 333378999999999987654 57889999


Q ss_pred             EEEEEeChhhhhhhhhc--c--CCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccccccc
Q psy15063        256 LEVKVLSNARCSTVIEE--S--IGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGE  330 (417)
Q Consensus       256 ~~v~i~~~~~C~~~~~~--~--~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~  330 (417)
                      +.++++++++|+..+..  .  +.+.||||+... +.++|+|                                      
T Consensus       148 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G--------------------------------------  189 (241)
T 1m9u_A          148 SSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNG--------------------------------------  189 (241)
T ss_dssp             EEEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTT--------------------------------------
T ss_pred             eeEEEEcHHHhhhhhcccCCCcccCCcEEECcCCCCCeeecC--------------------------------------
Confidence            99999999999987643  3  789999999854 7899999                                      


Q ss_pred             CCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEE--cC-CCccccCCCCeEEEecccchh
Q psy15063        331 FPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSY--GV-TGCAIMPSYPDLYTRVSEYIR  407 (417)
Q Consensus       331 ~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~--g~-~~C~~~~~~p~vyt~Vs~~~~  407 (417)
                                                      ||||||++.. ++|+|+||+||  +. .+|. .++.|+|||||+.|++
T Consensus       190 --------------------------------DSGgPL~~~~-~~~~l~Gi~S~~~~~g~~C~-~~~~p~vyt~V~~~~~  235 (241)
T 1m9u_A          190 --------------------------------DSGGPLNCPD-GGTRVVGVTSWVVSSGLGAC-LPDYPSVYTRVSAYLG  235 (241)
T ss_dssp             --------------------------------CTTCEEEEES-SSEEEEEEEEECCBCTTSCB-CTTSCEEEEEGGGTHH
T ss_pred             --------------------------------cCCccEEEeC-CCEEEEEEEEEeccCCCCcc-CCCCCEEEEEhHHhHh
Confidence                                            9999999975 88999999999  42 6898 6789999999999999


Q ss_pred             HHhhhh
Q psy15063        408 WIHVNA  413 (417)
Q Consensus       408 WI~~~~  413 (417)
                      ||+++|
T Consensus       236 WI~~~~  241 (241)
T 1m9u_A          236 WIGDNS  241 (241)
T ss_dssp             HHHHHC
T ss_pred             HHhhhC
Confidence            999875

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=2e-46  Score=349.08  Aligned_cols=217  Identities=28%  Similarity=0.509  Sum_probs=190.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+..   ....+.|++|.+++..    ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AHC~~~~~---~~~~~~v~~G~~~~~~----~~~~   67 (222)
T 1eq9_A            1 IVGGKDAPVG---KYPYQVSLRLSGSHRCGASILDNNNVLTA---AHCVDGLS---NLNRLKVHVGTNYLSE----SGDV   67 (222)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEECSSSEEEEC---HHHHTTCS---CGGGEEEEESCSBTTS----CCEE
T ss_pred             CCCCEECCCC---CcceEEEEEeCCCeEEEEEEeeCCEEEEh---hhcCCCCC---CCceEEEEECceecCC----CCeE
Confidence            5788888888   499999995   36899999999999999   99996531   2467999999988743    4578


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      +.|+++++||+|+.....||||||||++|+.|+++++|||||.......+..++++|||.+.... ..+..|+++.++++
T Consensus        68 ~~v~~~~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~  146 (222)
T 1eq9_A           68 YDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGG-NTPNALQEIELIVH  146 (222)
T ss_dssp             EEEEEEEECTTCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTC-CCCSBCEEEEEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCCEEEEEECCccccCCceEccCCCCCCcCCCCCEEEEEcccccCCCC-cccchheEeEEEEe
Confidence            89999999999999889999999999999999999999999987664478899999999987654 56789999999999


Q ss_pred             Chhhhh-hhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccC
Q psy15063        262 SNARCS-TVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALD  340 (417)
Q Consensus       262 ~~~~C~-~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~  340 (417)
                      +.++|+ ..+  .+.+.||||+...+.++|+|                                                
T Consensus       147 ~~~~C~~~~~--~~~~~~~Ca~~~~~~~~C~G------------------------------------------------  176 (222)
T 1eq9_A          147 PQKQCERDQW--RVIDSHICTLTKRGEGACHG------------------------------------------------  176 (222)
T ss_dssp             CHHHHHHHSS--SCCTTEEEECCCTTCBCCTT------------------------------------------------
T ss_pred             CHHHhCcccC--CCCccEEeecCCCCCeeeeC------------------------------------------------
Confidence            999998 544  37889999988668899999                                                


Q ss_pred             CeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        341 GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       341 ~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                            ||||||++  ++  +|+||+||| .+|+  .+.|+|||||+.|++||+++++
T Consensus       177 ----------------------DSGgPL~~--~~--~l~GI~S~g-~~C~--~~~p~vyt~V~~~~~WI~~~~~  221 (222)
T 1eq9_A          177 ----------------------DSGGPLVA--NG--AQIGIVSFG-SPCA--LGEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             ----------------------CTTCEEEE--TT--EEEEEEEEC-STTT--SSSCEEEEEGGGGHHHHHHTSC
T ss_pred             ----------------------CccceEEE--CC--EEEEEEEEC-CCcC--CCCCCEEEEHHHHHHHHHHHhh
Confidence                                  99999999  56  599999999 8999  4889999999999999999875

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=2.5e-46  Score=349.43  Aligned_cols=222  Identities=26%  Similarity=0.437  Sum_probs=192.7

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|++.   .++|+||||+++|||||   |||+.+.    ....+.|++|.+++...+. ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AHC~~~~----~~~~~~v~~G~~~~~~~~~-~~~~   69 (228)
T 2xw9_A            1 ILGGREAEAH---ARPYMASVQLNGAHLCGGVLVAEQWVLSA---AHCLEDA----ADGKVQVLLGAHSLSQPEP-SKRL   69 (228)
T ss_dssp             CBCC-CCCTT---SCTTEEEEEETTEEEEEEEEEETTEEEEC---GGGGSSC----TTCCEEEEESCSBSSSCCT-TCEE
T ss_pred             CCCCeECCCC---CCCcEEEEEECCCeEEEEEEEeCCEEEEc---HHhCCCC----CCCceEEEEcccccCCCCC-cceE
Confidence            5788899888   499999995   46899999999999999   9999643    3457899999998876554 5688


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.|.++++||+|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++.+++
T Consensus        70 ~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~-~~~~~l~~~~~~~  148 (228)
T 2xw9_A           70 YDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAG-RRPDSLQHVLLPV  148 (228)
T ss_dssp             EEEEEEEECTTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTC-CCCSBCEEEECCE
T ss_pred             EEEEEEEeCCCCCCCCCCCcEEEEEeCCCcccCCCeeecccCCcccCCCCCCEEEEEEecccCCCC-CCCchheEEEEEE
Confidence            899999999999999999999999999999999999999999865544 78999999999987654 5688999999999


Q ss_pred             eChhhhhhhhh--ccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEc
Q psy15063        261 LSNARCSTVIE--ESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIA  338 (417)
Q Consensus       261 ~~~~~C~~~~~--~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~  338 (417)
                      ++.++|+..+.  ..+.+.||||+. .+.++|+|                                              
T Consensus       149 ~~~~~C~~~~~~~~~~~~~~~Ca~~-~~~~~C~G----------------------------------------------  181 (228)
T 2xw9_A          149 LDRATCNRRTHHDGAITERLMCAES-NRRDSCKG----------------------------------------------  181 (228)
T ss_dssp             ECHHHHTSTTTTTTCCCTTEEEECC-SSCBCCTT----------------------------------------------
T ss_pred             cChhHhcCccccCCcccCCEEecCC-CCCccCCC----------------------------------------------
Confidence            99999998776  368899999986 47899999                                              


Q ss_pred             cCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        339 LDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       339 ~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                              ||||||++  ++  +|+||+|||..+|+ .++.|+|||||+.|++||+++++
T Consensus       182 ------------------------DsGgPL~~--~~--~l~Gi~s~g~~~C~-~~~~p~vyt~V~~~~~WI~~~i~  228 (228)
T 2xw9_A          182 ------------------------DAGGPLVC--GG--VLEGVVTSGSRVCG-NRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             ------------------------CTTCEEEE--TT--EEEEEECCSCCCSS-CTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             ------------------------CCcccEEE--CC--EEEEEEeecCCcCC-CCCCCcEEEEHHHHHHHHHHHhC
Confidence                                    99999999  56  59999999954898 67899999999999999999874

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=2.3e-46  Score=354.22  Aligned_cols=235  Identities=26%  Similarity=0.434  Sum_probs=198.2

Q ss_pred             CCCCcccccc--ceeEecCCCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEE
Q psy15063         91 YSCGDVSKER--VTYFKSPHHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVL  164 (417)
Q Consensus        91 ~~CG~~~~~~--~~~~~~~g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V  164 (417)
                      +.||......  ...+|++|.+|.++   +|||+|+|..    ++|+||||+++|||||   |||+.+..   .+..+.|
T Consensus         2 ~~cg~~~~~~~~~~~rIvgG~~a~~~---~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTA---AHC~~~~~---~~~~~~v   72 (247)
T 1ddj_A            2 FDCGKPQVEPKKCPGRVVGGCVAHPH---SWPWQVSLRTRFGMHFCGGTLISPEWVLTA---AHCLEKSP---RPSSYKV   72 (247)
T ss_dssp             CCTTCCSSCCCCCCTTCTTCEECCTT---SSTTEEEEECTTSCEEEEEEEEETTEEEEC---GGGGTTCS---CGGGCEE
T ss_pred             CccCCCCCCCcccCCCcCCCEECCCC---CCCcEEEEEcCCCCeEEEEEEeeCCEEEEc---HHHcCCCC---CCccEEE
Confidence            4688443322  13479999999988   4999999953    5899999999999999   99996532   2467899


Q ss_pred             EeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccC
Q psy15063        165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTS  243 (417)
Q Consensus       165 ~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~  243 (417)
                      ++|.++...... ..+.+.|.+++.||.      .||||||||++|+.|+++++|||||...... .+..++++|||.+.
T Consensus        73 ~~G~~~~~~~~~-~~~~~~v~~~~~hp~------~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~  145 (247)
T 1ddj_A           73 ILGAHQEVNLEP-HVQEIEVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ  145 (247)
T ss_dssp             EESCSBSSSCCT-TCEEEEEEEEEECTT------SCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCCS
T ss_pred             EEcccccCccCC-ceEEEEeeeEEcCCC------CCcEEEEEeCCceeeCCCEEeeecCCcccCCCCCCEEEEEEcccCC
Confidence            999988765444 568889999999996      4899999999999999999999999876544 78899999999987


Q ss_pred             CCCCCCCccceEEEEEEeChhhhhhhh--hccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCccee
Q psy15063        244 FPMGEPSPTLQKLEVKVLSNARCSTVI--EESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRI  320 (417)
Q Consensus       244 ~~~~~~~~~L~~~~v~i~~~~~C~~~~--~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~  320 (417)
                      ...  .+..|+++.++++++..|+...  ...+.+.||||+... +.++|+|                            
T Consensus       146 ~~~--~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G----------------------------  195 (247)
T 1ddj_A          146 GTF--GAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG----------------------------  195 (247)
T ss_dssp             SST--TTTBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCS----------------------------
T ss_pred             CCC--CCccceEEeeeecCHHHhcchhccCCCCcCCeEeecCCCCCCccccC----------------------------
Confidence            433  5788999999999999998753  226789999999765 7899999                            


Q ss_pred             ecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEE
Q psy15063        321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYT  400 (417)
Q Consensus       321 ~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt  400 (417)
                                                                ||||||++..+++|+|+||+||| .+|+ .++.|+|||
T Consensus       196 ------------------------------------------DSGgPL~~~~~~~~~l~GI~S~g-~~C~-~~~~p~vyt  231 (247)
T 1ddj_A          196 ------------------------------------------DAGGPLVCFEKDKYILQGVTSWG-LGCA-RPNKPGVYV  231 (247)
T ss_dssp             ------------------------------------------CTTCEEEEECSSSEEEEEEECGG-GCCB-BTTBCEEEE
T ss_pred             ------------------------------------------cCcCcEEEEECCcEEEEEEEEEC-CCCC-CCCCCEEEE
Confidence                                                      99999999888899999999999 8998 678999999


Q ss_pred             ecccchhHHhhhhcc
Q psy15063        401 RVSEYIRWIHVNAIV  415 (417)
Q Consensus       401 ~Vs~~~~WI~~~~~~  415 (417)
                      ||+.|++||+++|.-
T Consensus       232 ~V~~y~~WI~~~~~~  246 (247)
T 1ddj_A          232 RVSRFVTWIEGVMRN  246 (247)
T ss_dssp             EGGGSHHHHHHHHHT
T ss_pred             EhHHhHHHHHHHhhc
Confidence            999999999998863

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=3e-46  Score=348.37  Aligned_cols=215  Identities=26%  Similarity=0.462  Sum_probs=188.5

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.++.++   +|||++.+..      ++|+||||+++|||||   |||+.+        .+.|++|.+++...+. .
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTA---AHC~~~--------~~~v~~G~~~~~~~~~-~   65 (224)
T 1cgh_A            1 IIGGRESRPH---SRPYMAYLQIQSPAGQSRCGGFLVREDFVLTA---AHCWGS--------NINVTLGAHNIQRREN-T   65 (224)
T ss_dssp             CBSCEECCTT---SSTTEEEEEESTTTTSCEEEEEEEETTEEEEC---GGGCCS--------SEEEEESCSBTTSCCT-T
T ss_pred             CCCCEECCCC---CCCcEEEEEEECCCCCeEEEEEEeeCCEEEEh---HHhCCC--------CCEEEEeecccCCCCC-c
Confidence            5788888887   4999999942      7999999999999999   999953        5889999998876544 5


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|.++++||+|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+...  ..+..|+++.
T Consensus        66 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~--~~~~~l~~~~  143 (224)
T 1cgh_A           66 QQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMR--RGTDTLREVQ  143 (224)
T ss_dssp             CEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSS--CCCSBCEEEE
T ss_pred             cEEEEEEEEEcCCCCCCCCCcCCEEEEEECCCCcCCCceEeeECCCCCCCCCCCCEEEEEECCcCCCC--CCCCcceEEE
Confidence            788999999999999998999999999999999999999999999876644 7899999999998732  4678999999


Q ss_pred             EEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        258 VKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       258 v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +++++.++|+..+.....+.||||+... +.++|+|                                            
T Consensus       144 ~~i~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G--------------------------------------------  179 (224)
T 1cgh_A          144 LRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKG--------------------------------------------  179 (224)
T ss_dssp             EEBCCHHHHHHHCTTCCTTTEEEECCTTSCCBCCTT--------------------------------------------
T ss_pred             EEeeCHHHHHHHhCcCCCcceEeeccCCCCCeEeeC--------------------------------------------
Confidence            9999999999988655566799999875 7899999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                ||||||++  ++  +|+||+||| . |.  ...|+|||||+.|++||+++|+
T Consensus       180 --------------------------DSGgPL~~--~~--~l~Gi~S~g-~-~~--~~~p~vyt~V~~~~~WI~~~~~  223 (224)
T 1cgh_A          180 --------------------------DSGGPLLC--NN--VAHGIVSYG-K-SS--GVPPEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             --------------------------CTTCEEEE--TT--EEEEEEEEC-C-TT--CCSCEEEEEGGGGHHHHHHHHH
T ss_pred             --------------------------CCccceEE--cc--EEEEEEEEE-C-CC--CCCCeEEEEHHHhHHHHHHHhh
Confidence                                      99999999  56  599999999 4 54  5679999999999999999875

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=5.9e-47  Score=356.66  Aligned_cols=221  Identities=27%  Similarity=0.448  Sum_probs=169.1

Q ss_pred             EecCCCCCCCCCCCCCcceeeEcc---ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        104 FKSPHHPARPSSGLTCDYDVAIRQ---DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       104 ~~~~g~~a~~~~~~~~PW~v~i~~---~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      +|++|.+|.++   +|||+|++..   ++|+||||+++|||||   |||+.        ..+.|++|.+++...+. ..+
T Consensus         3 rIvgG~~a~~~---~~Pw~v~l~~~~~~~CgGsLIs~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~~~   67 (240)
T 1sgf_A            3 PPVQSQVDCEN---SQPWHVAVYRFNKYQCGGVLLDRNWVLTA---AHCYN--------DKYQVWLGKNNFLEDEP-SDQ   67 (240)
T ss_dssp             ----------C---CCTTEEEEECTTSCCEEEEECSSSEEEEC---GGGCC--------SCCEEEECC----C-CT-TCE
T ss_pred             cccCCeECCCC---CcCCEEEEEeCCCeEEEEEEecCCEEEEC---HHhCC--------CCceEEeCCcccccCCC-Cce
Confidence            68899999888   4999999943   6899999999999999   99995        35789999998765444 568


Q ss_pred             EEeeeEEEeCCCCCCC-----------CCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCC
Q psy15063        181 RRGVRRVLFHSHFHPF-----------VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEP  249 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~-----------~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~  249 (417)
                      .+.|+++++||+|+..           ...||||||||++|+.|+++++|||||..... .+..++++|||.+.......
T Consensus        68 ~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~-~~~~~~v~GwG~~~~~~~~~  146 (240)
T 1sgf_A           68 HRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPK-LGSTCLASGWGSTTPIKFKY  146 (240)
T ss_dssp             EEEEEEEEECTTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCCC-TTCEEEEC-------C----
T ss_pred             EEEEEEEEcCCCCcccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCCCCCC-CCCEEEEEecCCCCCCCCCC
Confidence            8899999999999876           77899999999999999999999999987644 78999999999987654356


Q ss_pred             CccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccccc
Q psy15063        250 SPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADI  328 (417)
Q Consensus       250 ~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~  328 (417)
                      +..|+++.+++++.++|+..+...+.+.||||+... +.++|+|                                    
T Consensus       147 ~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G------------------------------------  190 (240)
T 1sgf_A          147 PDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEH------------------------------------  190 (240)
T ss_dssp             -----CEEEEEECTHHHHTTCSSBCCTTEEEEEECSSSEEECCC------------------------------------
T ss_pred             CccccEEeeeEeCHHHhhhhhCCCcCCCeEeEccCCCCCCCCCC------------------------------------
Confidence            789999999999999999888767899999999754 6789999                                    


Q ss_pred             ccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhH
Q psy15063        329 GEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRW  408 (417)
Q Consensus       329 ~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~W  408 (417)
                                                        ||||||++  ++  +|+||+|||..+|+ .++.|+|||||+.|++|
T Consensus       191 ----------------------------------DSGgPL~~--~~--~l~GI~S~g~~~C~-~~~~p~vyt~V~~~~~W  231 (240)
T 1sgf_A          191 ----------------------------------DSGGPLIC--DG--ILQGITSWGPEPCG-EPTEPSVYTKLIKFSSW  231 (240)
T ss_dssp             ----------------------------------CTTCEEEE--TT--EEEEEECCCCSSCC-CSSCCEEEEESGGGHHH
T ss_pred             ----------------------------------CCcCcEEE--cc--EEEEEEEECCCCCC-CCCCCeEEEeHHHHHHH
Confidence                                              99999999  66  49999999966898 67899999999999999


Q ss_pred             Hhhhhcc
Q psy15063        409 IHVNAIV  415 (417)
Q Consensus       409 I~~~~~~  415 (417)
                      |+++|..
T Consensus       232 I~~~~~~  238 (240)
T 1sgf_A          232 IRETMAN  238 (240)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhc
Confidence            9999864

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=5.2e-47  Score=356.87  Aligned_cols=223  Identities=25%  Similarity=0.406  Sum_probs=186.9

Q ss_pred             CCCCCCCCCCCCCcceeeEcc-------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCc
Q psy15063        107 PHHPARPSSGLTCDYDVAIRQ-------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSH  179 (417)
Q Consensus       107 ~g~~a~~~~~~~~PW~v~i~~-------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~  179 (417)
                      +|.+|.++   +|||+|+|..       ++|+||||+++|||||   |||+.+.      ..+.|++|.+++..... ..
T Consensus         1 gG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTA---AhC~~~~------~~~~v~~G~~~~~~~~~-~~   67 (240)
T 1fon_A            1 NGEDAVPY---SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTA---GHCISTS------RTYQVVLGEYDRSVLEG-SE   67 (240)
T ss_dssp             -----------CEEEEEEEEEEETTEEEEEECCEEEETTEEEEC---GGGCCTT------SCEEEEEEEEETTEEEE-EE
T ss_pred             CCccCCcC---CcccEEEEEEecCCcEeeEEEEEEeeCCEEEEC---HHHCCCC------CceEEEeeeeeccccCC-Cc
Confidence            36677776   5999999953       6899999999999999   9999653      67899999998764332 23


Q ss_pred             --EEEeeeEEEeCCCCCCCCCC--CCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccce
Q psy15063        180 --VRRGVRRVLFHSHFHPFVLS--NDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       180 --q~~~V~~i~iHP~Y~~~~~~--nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                        +.+.|.++++||+|+.....  ||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+
T Consensus        68 ~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~  146 (240)
T 1fon_A           68 QVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGG-PLPDKLQ  146 (240)
T ss_dssp             EEEEECTTSEEECTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSS-SCCSBCE
T ss_pred             eeEeeeeeEEEECCCCcCCCccCCCCEEEEEecCccccCCcccccCCCCcccCCCCCCeEEEEEEeEcCCCC-CCChhhe
Confidence              67889999999999988777  999999999999999999999999876544 78899999999987654 5688999


Q ss_pred             EEEEEEeChhhhhhhh--hccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        255 KLEVKVLSNARCSTVI--EESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~~--~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      ++.+++++.++|+..+  ...+.+.||||+.. +.++|+|                                        
T Consensus       147 ~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~-~~~~C~G----------------------------------------  185 (240)
T 1fon_A          147 QALLPTVDYEHCSQWDWWGITVKKTMVCAGGD-TRSGCNG----------------------------------------  185 (240)
T ss_dssp             EEECCEECHHHHTSTTTTGGGCCTTEEEECCS-SSCSTTS----------------------------------------
T ss_pred             EEEEeeeCHHHhccceecCCccccceEeecCC-CCcccCC----------------------------------------
Confidence            9999999999998763  33688999999865 4899999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                    ||||||++.. +++|+|+||+|||. .+|+ ..+.|+|||||+.|++||+
T Consensus       186 ------------------------------DsGgPL~~~~~~~~~~l~Gi~S~g~~~~C~-~~~~p~vyt~V~~~~~WI~  234 (240)
T 1fon_A          186 ------------------------------DSGGPLNCPAADGSWQVHGVTSFVSAFGCN-TIKKPTVFTRVSAFIDWID  234 (240)
T ss_dssp             ------------------------------CTTCEEEEECSSSCEEEEEEEEECCTTCSS-BTTBCEEEEEGGGSHHHHH
T ss_pred             ------------------------------CCCCeEEeEcCCCCEEEEEEEEEcCCCCCC-CCCCCcEEEEhHHHHHHHH
Confidence                                          9999999987 88999999999994 4898 6789999999999999999


Q ss_pred             hhhcc
Q psy15063        411 VNAIV  415 (417)
Q Consensus       411 ~~~~~  415 (417)
                      +++..
T Consensus       235 ~~~~~  239 (240)
T 1fon_A          235 ETIAS  239 (240)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98863

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=3.7e-46  Score=377.28  Aligned_cols=240  Identities=24%  Similarity=0.411  Sum_probs=203.7

Q ss_pred             CCCCccccccceeEecCCCCCCCCCCCCCcceeeEc-cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEecee
Q psy15063         91 YSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIR-QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDH  169 (417)
Q Consensus        91 ~~CG~~~~~~~~~~~~~g~~a~~~~~~~~PW~v~i~-~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~  169 (417)
                      ..||... .....+|++|.+|.++   +|||+|+|. .++|+||||+++|||||   |||+.+...  ....+.|++|.+
T Consensus       149 ~~CG~~~-~~~~~rIvgG~~a~~~---~~Pw~v~l~~~~~CgGsLIs~~~VLTA---AHC~~~~~~--~~~~~~V~~G~~  219 (403)
T 1zjk_A          149 PVCGLSA-RTTGGQIYGGQKAKPG---DFPWQVLILGGTTAAGALLYDNWVLTA---AHAVYEQKH--DASALDIRMGTL  219 (403)
T ss_dssp             ECCCCCS-SCCSCCCSSCEECCTT---SSTTEEEEEESCCEEEEEETTTEEEEC---HHHHGGGTT--CSTTEEEEESCS
T ss_pred             CCCCCCC-CCCCccccCCcCCCCC---CcCCEeEeccCCceEEEEecCCEEEEc---HHhCCCCCC--CcceEEEEcccc
Confidence            4799433 2345689999999988   499999996 56899999999999999   999965321  247789999998


Q ss_pred             cCCCCCCCCcEEEeeeEEEeCCCCCCC-CCCCCeEEEEecCCcCCCCceeeeeCCCCCCc--c-CCCeEEEEEcCccCCC
Q psy15063        170 DLTQLNETSHVRRGVRRVLFHSHFHPF-VLSNDIALLQLDRPVPLTGTIQPVCLPQKGES--F-IGKRGHVVGWGVTSFP  245 (417)
Q Consensus       170 ~~~~~~~~~~q~~~V~~i~iHP~Y~~~-~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~--~-~~~~~~v~GWG~~~~~  245 (417)
                      +...  . ..+.+.|.++++||+|+.. +..||||||||++|+.|+++|+|||||.....  . .+..++++|||.+..+
T Consensus       220 ~~~~--~-~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~  296 (403)
T 1zjk_A          220 KRLS--P-HYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG  296 (403)
T ss_dssp             BTTC--S-CCEEEEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESCTTSSS
T ss_pred             ccCC--C-CceEEeEEEEEECCCCCCCCCCcccEEEEEeCCcCcCCCceecccCCCcccccccCCCCeEEEEcCCcCCCC
Confidence            6432  2 4588899999999999987 78999999999999999999999999987542  2 6899999999998764


Q ss_pred             CCCCCccceEEEEEEeChhhhhhhhhc------cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcc
Q psy15063        246 MGEPSPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRR  318 (417)
Q Consensus       246 ~~~~~~~L~~~~v~i~~~~~C~~~~~~------~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~  318 (417)
                        ..+..|+++.++++++++|+..+..      .+++.||||+... +.++|+|                          
T Consensus       297 --~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~G--------------------------  348 (403)
T 1zjk_A          297 --FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRG--------------------------  348 (403)
T ss_dssp             --CCCSBCEEEEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSC--------------------------
T ss_pred             --ccCcccEEEEEeEeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcC--------------------------
Confidence              3688999999999999999988754      5889999999776 7899999                          


Q ss_pred             eeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCCC
Q psy15063        319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYP  396 (417)
Q Consensus       319 ~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~p  396 (417)
                                                                  ||||||++..  +++|+|+||+|||..+|+ ..+.|
T Consensus       349 --------------------------------------------DSGGPL~~~~~~~~~~~l~GIvS~g~~~C~-~~~~p  383 (403)
T 1zjk_A          349 --------------------------------------------DSGGALVFLDSETERWFVGGIVSWGSMNCG-EAGQY  383 (403)
T ss_dssp             --------------------------------------------STTCEEEEEETTTTEEEEEEEEEEECSCC---CCCC
T ss_pred             --------------------------------------------CCCccEEEEECCCCcEEEEEEEEECCCCCC-CCCCC
Confidence                                                        9999999975  689999999999966898 67889


Q ss_pred             eEEEecccchhHHhhhhcc
Q psy15063        397 DLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       397 ~vyt~Vs~~~~WI~~~~~~  415 (417)
                      +|||||+.|++||+++|..
T Consensus       384 ~vyt~V~~y~~WI~~~i~~  402 (403)
T 1zjk_A          384 GVYTKVINYIPWIENIISD  402 (403)
T ss_dssp             EEEEEGGGGHHHHHHHHTT
T ss_pred             eEEEEHHHHHHHHHHHHhc
Confidence            9999999999999998863

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=4.3e-46  Score=347.18  Aligned_cols=218  Identities=26%  Similarity=0.413  Sum_probs=189.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+.    ....+.|++|.+++..    ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLI~~~~VLTA---AHC~~~~----~~~~~~v~~G~~~~~~----~~~~   66 (224)
T 1pq7_A            1 IVGGTSASAG---DFPFIVSISRNGGPWCGGSLLNANTVLTA---AHCVSGY----AQSGFQIRAGSLSRTS----GGIT   66 (224)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---HHHHTTS----CGGGEEEEESCSBSSS----SSEE
T ss_pred             CCCCEECCCC---CcCeEEEEEECCCeEEEEEEecCCEEEEc---HHccCCC----CCCceEEEeCcceecC----CCEE
Confidence            5688888887   599999995   46899999999999999   9999653    3467999999988743    4578


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.|.++++||+|+..  .||||||||++|+.|+++++|||||...... .+..++++|||.+.......+..|+++.+++
T Consensus        67 ~~v~~i~~hp~y~~~--~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~  144 (224)
T 1pq7_A           67 SSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPI  144 (224)
T ss_dssp             ECEEEEEECTTCBTT--BTCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEE
T ss_pred             EEEEEEEECCCCCCC--CCCEEEEEeCCCCcCCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEE
Confidence            899999999999876  7999999999999999999999999543332 7899999999998765434678899999999


Q ss_pred             eChhhhhhhhh-ccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEc
Q psy15063        261 LSNARCSTVIE-ESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIA  338 (417)
Q Consensus       261 ~~~~~C~~~~~-~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~  338 (417)
                      ++.++|+..+. ..+.+.||||+... +.++|+|                                              
T Consensus       145 ~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G----------------------------------------------  178 (224)
T 1pq7_A          145 VSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQG----------------------------------------------  178 (224)
T ss_dssp             ECHHHHHHHHCTTTSCTTEEEECCTTCCCBCCTT----------------------------------------------
T ss_pred             EcHHHhhHhhcCCCCCCCeEEeecCCCCCCCCcC----------------------------------------------
Confidence            99999998875 36889999998755 7899999                                              


Q ss_pred             cCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhh
Q psy15063        339 LDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       339 ~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                                              ||||||++. ++  +|+||+||| .+|+ .++.|+|||||+.|++||+++|
T Consensus       179 ------------------------DSGgPL~~~-~g--~l~Gi~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          179 ------------------------DSGGPIVDS-SN--TLIGAVSWG-NGCA-RPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             ------------------------CTTCEEECT-TC--CEEEEEEEC-SSSS-CTTCCEEEEETTTSHHHHHHHC
T ss_pred             ------------------------CCCcceECc-CC--eEEEEEEeC-CCCC-CCCCCeEEEEHHHHHHHHHhhC
Confidence                                    999999986 45  599999999 7999 6789999999999999999875

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=1e-45  Score=347.07  Aligned_cols=214  Identities=25%  Similarity=0.404  Sum_probs=185.8

Q ss_pred             CCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCC-CCCcEEEeeeEEEeCCC
Q psy15063        118 TCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLN-ETSHVRRGVRRVLFHSH  192 (417)
Q Consensus       118 ~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~-~~~~q~~~V~~i~iHP~  192 (417)
                      +|||+|+|..    ++|+||||+++|||||   |||+.+..  .+...+.|++|.+++.... ....+.+.|.++++||.
T Consensus         8 ~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTA---AHC~~~~~--~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~   82 (234)
T 2asu_B            8 NSPWTVSLRNRQGQHFCGGSLVKEQWILTA---RQCFSSCH--MPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPS   82 (234)
T ss_dssp             CCTTEEEEECTTSCEEEEEEEEETTEEEEE---GGGSSCTT--CCCTTCEEEESCSBSSCCTTCTTCEEEEEEEEEECST
T ss_pred             CCcceEEeeccCCCEEEEEEEEeCCEEEEC---HHHcCCCC--CCcccEEEEEeeeeccCCCCCCceEEEEEEEEecCCC
Confidence            5999999953    5899999999999999   99996532  2347789999999876541 22568889999999997


Q ss_pred             CCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhh
Q psy15063        193 FHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIE  271 (417)
Q Consensus       193 Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~  271 (417)
                            .||||||||++|+.|+++++|||||...... .+..++++|||.+....  .+..|+++.++++++++|+..+.
T Consensus        83 ------~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~--~~~~L~~~~~~~~~~~~C~~~~~  154 (234)
T 2asu_B           83 ------GSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTG--NDTVLNVALLNVISNQECNIKHR  154 (234)
T ss_dssp             ------TCCEEEEEESSCCCCSSSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSS--CTTBCEEEEEEEECHHHHHHHTT
T ss_pred             ------CCCeEEEEeCCcCcCCCcEeccCCCCccccCCCCCEEEEEeCCccCCCC--CCccceEEEeeEEcHHHcccccC
Confidence                  4899999999999999999999999876544 78999999999987544  57899999999999999999887


Q ss_pred             ccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEe
Q psy15063        272 ESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALL  350 (417)
Q Consensus       272 ~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli  350 (417)
                      ..+.+.||||+... +.++|+|                                                          
T Consensus       155 ~~~~~~~~Ca~~~~~~~~~C~G----------------------------------------------------------  176 (234)
T 2asu_B          155 GRVRESEMCTEGLLAPVGACEG----------------------------------------------------------  176 (234)
T ss_dssp             TCCCTTEEEECCCSSCCBCCTT----------------------------------------------------------
T ss_pred             CccCcceEeecCCCCCCeeccC----------------------------------------------------------
Confidence            67899999999876 7899999                                                          


Q ss_pred             cCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        351 NEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       351 ~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                  ||||||++..+++|+|+||+||| .+|+ .++.|+|||||+.|++||++++...
T Consensus       177 ------------DSGgPL~~~~~~~~~l~Gi~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~~~~~~  228 (234)
T 2asu_B          177 ------------DYGGPLACFTHNSWVLEGIIIPN-RVCA-RSRWPAVFTRVSVFVDWIHKVMRLG  228 (234)
T ss_dssp             ------------CTTCEEEEEETTEEEEEEEECCC-SSSS-CTTCCEEEEEGGGSHHHHHHHC---
T ss_pred             ------------CCCCceEEEECCeEEEEEEEEcC-CCCC-CCCCCeEEEEHHHHHHHHHHHhhcc
Confidence                        99999999999999999999999 8998 6789999999999999999998754

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=1.4e-46  Score=356.79  Aligned_cols=232  Identities=23%  Similarity=0.434  Sum_probs=196.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-----cccceEEEeeCCeEEeeccceeeecCCC--CCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-----QDVCAVRIEFEKVNLARKVGGVCDIDQL--RDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~--~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.++   +|||+|++.     .++|+||||+++|||||   |||+....  .......+.|++|.++.......
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTA---AHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~   74 (259)
T 3rm2_H            1 IVEGSDAEIG---MSPWQVMLFRKSPQELLCGASLISDRWVLTA---AHCLLYPPWDKNFTENDLLVRIGKHSRTRYERN   74 (259)
T ss_dssp             CBSCEECCTT---SSTTEEEEEEETTEEEEEEEEECSSSEEEEC---GGGTEEGGGTEECCGGGEEEEESCCBSSSCCTT
T ss_pred             CCCCEECCCC---CcCCEEEEEECCCCceEEEEEEEeCCEEEEc---HHhCcccccccccCcccEEEEECcccccccccC
Confidence            5788888888   499999993     34899999999999999   99995321  11245778999999988765553


Q ss_pred             CcEEEeeeEEEeCCCCC-CCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCc----cCCCeEEEEEcCccCCCCC-----
Q psy15063        178 SHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES----FIGKRGHVVGWGVTSFPMG-----  247 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~-~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~----~~~~~~~v~GWG~~~~~~~-----  247 (417)
                      ..+...|+++++||+|+ .....||||||||++|+.|+++++|||||.....    ..+..++++|||.+.....     
T Consensus        75 ~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~  154 (259)
T 3rm2_H           75 IEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGK  154 (259)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC-------
T ss_pred             cceeeEEEEEEECCCCCCCCCCCCcEEEEEeCCceEcCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCccccc
Confidence            45666799999999998 5678899999999999999999999999976532    1689999999998775321     


Q ss_pred             CCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC----CCCCccCCCCCcccccccccccccCccccCCcceeecc
Q psy15063        248 EPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE----TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILG  323 (417)
Q Consensus       248 ~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~----~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G  323 (417)
                      ..+..|+++.+++++...|+..+...+++.||||+...    ..++|+|                               
T Consensus       155 ~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Cag~~~~~~~~~~~C~G-------------------------------  203 (259)
T 3rm2_H          155 GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEG-------------------------------  203 (259)
T ss_dssp             CCCSBCEEEEEEBCCHHHHHHTCSSCCCTTEEEECCCGGGSCCCBCCTT-------------------------------
T ss_pred             cccccceEEEEEEeCHHHhhhhhcccCCCceEeeeccCCCCCCCcccCC-------------------------------
Confidence            13778999999999999999988778899999998643    4589999                               


Q ss_pred             cccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCCCeEEEe
Q psy15063        324 GEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDLYTR  401 (417)
Q Consensus       324 ~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~p~vyt~  401 (417)
                                                             ||||||++..  +++|+|+||+||| .+|+ ..+.|+||||
T Consensus       204 ---------------------------------------DsGgPL~~~~~~~~~~~l~GI~S~g-~~C~-~~~~p~vyt~  242 (259)
T 3rm2_H          204 ---------------------------------------DSGGPFVMKSPFNNRWYQMGIVSWG-EGCD-RDGKYGFYTH  242 (259)
T ss_dssp             ---------------------------------------CTTCEEEEECTTTCCEEEEEEEEEC-SSSS-CTTCCEEEEE
T ss_pred             ---------------------------------------CCCCeeEEEECCCCCEEEEEEEEEC-CCCC-CCCCCeEEEE
Confidence                                                   9999999987  8899999999999 8998 7789999999


Q ss_pred             cccchhHHhhhhc
Q psy15063        402 VSEYIRWIHVNAI  414 (417)
Q Consensus       402 Vs~~~~WI~~~~~  414 (417)
                      |+.|++||+++|+
T Consensus       243 V~~~~~WI~~~i~  255 (259)
T 3rm2_H          243 VFRLKKWIQKVID  255 (259)
T ss_dssp             TGGGHHHHHHHHH
T ss_pred             HHHhHHHHHHHHH
Confidence            9999999999885

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=5.8e-46  Score=348.06  Aligned_cols=221  Identities=25%  Similarity=0.440  Sum_probs=194.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc--cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR--QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~--~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.+|.++   +|||+|.+.  .++|+||||+++|||||   |||+.+        .+.|++|.+++........+.+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~CgGsLIs~~~VLTA---AHC~~~--------~~~v~~G~~~~~~~~~~~~~~~   66 (231)
T 2aiq_A            1 VIGGDECNIN---EHRFLALVYANGSLCGGTLINQEWVLTA---RHCDRG--------NMRIYLGMHNLKVLNKDALRRF   66 (231)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEECSSSEEEEC---GGGCCS--------SCEEEESCSCTTSCCTTCEEEC
T ss_pred             CCCCeECCCC---CCCeEEEEEcCCCeEEEEEEeCCEEEEc---HHcCCC--------CCEEEEecccccccCCCceEEE
Confidence            5788888887   599999995  46899999999999999   999853        4789999998875444356778


Q ss_pred             eeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeC
Q psy15063        183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLS  262 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~  262 (417)
                      .|.++++||+|+.....||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.+++++
T Consensus        67 ~v~~~~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~  145 (231)
T 2aiq_A           67 PKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPS-VGSVCRIMGWGTITSPNATLPDVPHCANINILD  145 (231)
T ss_dssp             EEEEECCSSCCSSSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEESSCSSSSSCCCCSSCEEEEEEEEC
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEecCCCCCCCcEEeeECCCCCCC-CCCEEEEEeCCccCCCCCccCchhhhccceecc
Confidence            8999999999999999999999999999999999999999987664 789999999999876543568899999999999


Q ss_pred             hhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        263 NARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       263 ~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      .++|+..+.. +.+.||||+... +.++|+|                                                 
T Consensus       146 ~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~G-------------------------------------------------  175 (231)
T 2aiq_A          146 YAVCQAAYKG-LAATTLCAGILEGGKDTCKG-------------------------------------------------  175 (231)
T ss_dssp             HHHHHHHCTT-CCSSEEEEECTTCSCBCCTT-------------------------------------------------
T ss_pred             hhhhhhhhcC-CCcCcEEeccCCCCCcccCC-------------------------------------------------
Confidence            9999998864 889999999754 7899999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                           ||||||++  ++  +|+||+|||..+|+ .++.|+|||||+.|++||++++...
T Consensus       176 ---------------------DSGgPL~~--~~--~l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI~~~~~~~  224 (231)
T 2aiq_A          176 ---------------------DSGGPLIC--NG--QFQGILSVGGNPCA-QPRKPGIYTKVFDYTDWIQSIISGN  224 (231)
T ss_dssp             ---------------------CTTCEEEE--TT--EEEEEEEEECSSTT-CTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             ---------------------cCCCcEEE--CC--EEEEEEEEeCCCCC-CCCCCEEEEEHHHHHHHHHHHHcCC
Confidence                                 99999999  56  49999999967898 6789999999999999999998753

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=1.9e-46  Score=352.35  Aligned_cols=220  Identities=25%  Similarity=0.407  Sum_probs=193.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc---ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ---DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~---~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|..   ++|+||||+++|||||   |||+.        ..+.|++|.+++...+. ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGsLIs~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-~~~~   65 (237)
T 1gvz_A            1 IIGGWECEKH---SKPWQVAVYHQGHFQCGGVLVHPQWVLTA---AHCMS--------DDYQIWLGRHNLSKDED-TAQF   65 (237)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCC--------SSCEEEESCSBTTSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCeEEEEeeCCceEEEeEEeeCCEEEEc---HHhCC--------CCCeEEEeecccccCCC-CceE
Confidence            5788888887   5999999953   5899999999999999   99984        45789999998876554 5788


Q ss_pred             EeeeEEEeCCCCCCCCC-----------CCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCC
Q psy15063        182 RGVRRVLFHSHFHPFVL-----------SNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPS  250 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~-----------~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~  250 (417)
                      +.|.++++||+|+....           .||||||||++|+.|+++++|||||..... .+..++++|||.+.......+
T Consensus        66 ~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~-~~~~~~v~GwG~~~~~~~~~~  144 (237)
T 1gvz_A           66 HQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPK-LGSTCYTSGWGLISTFTNRGS  144 (237)
T ss_dssp             ECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEEEECSCTTTCSEE
T ss_pred             EEeeeEecCCccCcccccccccccccccCCceEEEEeCCCcccCCcEeeeECCCCCCC-CCCEEEEECCCcccCCCCCCC
Confidence            99999999999998776           899999999999999999999999987644 789999999998854433567


Q ss_pred             ccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccc
Q psy15063        251 PTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIG  329 (417)
Q Consensus       251 ~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~  329 (417)
                      ..|+++.+++++.++|+..++..+.+.||||+... +.++|+|                                     
T Consensus       145 ~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------  187 (237)
T 1gvz_A          145 GTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLG-------------------------------------  187 (237)
T ss_dssp             EEEEEEEEEEECGGGGCSSCGGGCCTTEEEEECSSTTCEECGG-------------------------------------
T ss_pred             CccEEEEEeEeChhHhhhhhhhcCCCceEEEeeCCCCCccCCC-------------------------------------
Confidence            89999999999999999988777899999999855 7789999                                     


Q ss_pred             cCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        330 EFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       330 ~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                                                       ||||||++  ++.  |+||+|||..+|+ ..+.|+|||||+.|++||
T Consensus       188 ---------------------------------DSGgPL~~--~~~--l~GI~S~g~~~C~-~~~~p~vyt~V~~~~~WI  229 (237)
T 1gvz_A          188 ---------------------------------DSGGALIC--DGV--FQGITSWGYSECA-DFNDNFVFTKVMPHKKWI  229 (237)
T ss_dssp             ---------------------------------GTTCEEEE--TTE--EEEEECCCSSSCE-ETTTSCCEEESGGGHHHH
T ss_pred             ---------------------------------CccCcEee--CCE--EEEEEEeCCCCCC-CCCCCcEEEEHHHHHHHH
Confidence                                             99999999  664  9999999943898 788999999999999999


Q ss_pred             hhhhcc
Q psy15063        410 HVNAIV  415 (417)
Q Consensus       410 ~~~~~~  415 (417)
                      ++++..
T Consensus       230 ~~~~~~  235 (237)
T 1gvz_A          230 KETIEK  235 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998863

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=1e-45  Score=344.66  Aligned_cols=216  Identities=25%  Similarity=0.406  Sum_probs=191.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.++.++   +|||+|.+.       .++|+||||+++|||||   |||+.        ..+.|++|.+++..... 
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTA---AHC~~--------~~~~v~~G~~~~~~~~~-   65 (227)
T 3fzz_A            1 IIGGNEISPH---SRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTA---AHCKG--------RSMTVTLGAHNIKAKEE-   65 (227)
T ss_dssp             CBTCEECCTT---SSTTEEEEEEECSSSCEEEEEEEEEETTEEEEC---TTCCC--------EEEEEEESCSBTTSCCT-
T ss_pred             CCCCEECCCC---CcCCEEEEEEEeCCCceeEEEEEEEeCCEEEEC---cccCC--------CCcEEEEcccccCCCCC-
Confidence            5788888888   599999984       45899999999999999   99983        56899999998877665 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      ..+.+.|.++++||+|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++
T Consensus        66 ~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~  144 (227)
T 3fzz_A           66 TQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDG-EFPKTLHEV  144 (227)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSTTS-CCCSBCEEE
T ss_pred             CceEEEEEEEEECcCCCCCCCcCCEEEEEECCcCCCCCcccccCCCCcccCCCCCCEEEEEECCcccCCC-CCCCeeeEE
Confidence            6788999999999999999999999999999999999999999999887654 89999999999987655 578899999


Q ss_pred             EEEEeChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcE
Q psy15063        257 EVKVLSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQ  334 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~  334 (417)
                      .+++++...|+..+.. ...+.|||++... +.++|+|                                          
T Consensus       145 ~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~g------------------------------------------  182 (227)
T 3fzz_A          145 KLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEE------------------------------------------  182 (227)
T ss_dssp             EEEBCCHHHHHHHHTTTCCTTTEEEECCCSSCBCCTTT------------------------------------------
T ss_pred             EeeeecHHHhhhhhccccCCCceEEEeCCCCCCccccc------------------------------------------
Confidence            9999999999987765 5588999999765 7899999                                          


Q ss_pred             EEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        335 VAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       335 ~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                  ||||||++  ++  +|+||+||| .+|+  . .|+|||||+.|++||+++|+
T Consensus       183 ----------------------------DsGgPl~~--~~--~l~Gi~S~g-~~c~--~-~p~vyt~V~~~~~WI~~~i~  226 (227)
T 3fzz_A          183 ----------------------------DSGGPLVC--KR--AAAGIVSYG-QTDG--S-APQVFTRVLSFVSWIKKTMK  226 (227)
T ss_dssp             ----------------------------TTTCEEEE--TT--EEEEEEEEC-CTTC--S-SSEEEEEGGGTHHHHHHHHT
T ss_pred             ----------------------------CCccceEE--ec--CCcEEEEEC-CCCC--C-CCeEEEEhHHhHHHHHHHHh
Confidence                                        99999999  44  599999999 7887  2 39999999999999999875

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=3.1e-46  Score=368.68  Aligned_cols=233  Identities=24%  Similarity=0.383  Sum_probs=189.1

Q ss_pred             CCCCccccc-cceeEecCCCCCCCCCCCCCcceeeEccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEecee
Q psy15063         91 YSCGDVSKE-RVTYFKSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDH  169 (417)
Q Consensus        91 ~~CG~~~~~-~~~~~~~~g~~a~~~~~~~~PW~v~i~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~  169 (417)
                      ..||..... ....+|++|.+|.++   +|||+|.|..++|+||||+++|||||   |||+.+.      ....|++|.+
T Consensus        68 ~~CG~~~~~~~~~~rIvgG~~a~~~---~~Pw~v~l~~~~CgGsLIs~~~VLTA---AHC~~~~------~~~~v~~G~~  135 (333)
T 1elv_A           68 PVCGVPREPFEEKQRIIGGSDADIK---NFPWQVFFDNPWAGGALINEYWVLTA---AHVVEGN------REPTMYVGST  135 (333)
T ss_dssp             ECCSCCSSCC-----CBTCEECCGG---GSTTEEEEETTEEEEEEEETTEEEEC---HHHHTTC------SSCCEECSCS
T ss_pred             CCcCCCCCcccccceeecCcccCCC---CcCeEEEecCCceeEEEecCCEEEeh---hheeCCC------CCCeEEEeee
Confidence            479943221 234689999999988   49999999777999999999999999   9999753      2347899998


Q ss_pred             cCCCCCCCCcEEEee---eEEEeCCCCCC-------CCCCCCeEEEEecCCcCCCCceeeeeCCCCCCc--c-CCCeEEE
Q psy15063        170 DLTQLNETSHVRRGV---RRVLFHSHFHP-------FVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES--F-IGKRGHV  236 (417)
Q Consensus       170 ~~~~~~~~~~q~~~V---~~i~iHP~Y~~-------~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~--~-~~~~~~v  236 (417)
                      ++...   ..+.+.|   .++++||+|+.       .+..||||||||++|+.|+++|+|||||.....  . .+..+++
T Consensus       136 ~~~~~---~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~g~~~~v  212 (333)
T 1elv_A          136 SVQTS---RLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLI  212 (333)
T ss_dssp             BCC----------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEE
T ss_pred             ecccC---ccceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCcccccccCCcEEEE
Confidence            87432   2344555   99999999984       567899999999999999999999999977643  2 6899999


Q ss_pred             EEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhc---------cCCCCeEEecCCCCCCCccCCCCCccccccccccc
Q psy15063        237 VGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE---------SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQF  307 (417)
Q Consensus       237 ~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~---------~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~w  307 (417)
                      +|||.+...  ..+..|+++.+++++..+|+..+..         .+++.||||+...+.++|+|               
T Consensus       213 ~GWG~t~~~--~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~~~~~C~G---------------  275 (333)
T 1elv_A          213 SGWGRTEKR--DRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKG---------------  275 (333)
T ss_dssp             EESCCCSSC--SSCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECSTTCBCCTT---------------
T ss_pred             EECcCcCCC--CcCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCCCCCcCcC---------------
Confidence            999998764  3678999999999999999987642         47899999997768899999               


Q ss_pred             ccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CC-eEEEEeEEEE
Q psy15063        308 HQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DG-YHVLAGIVSY  384 (417)
Q Consensus       308 i~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g-~~~l~GI~S~  384 (417)
                                                                             ||||||++..  ++ +|+|+||+||
T Consensus       276 -------------------------------------------------------DSGGPL~~~~~~~~~~~~l~GIvS~  300 (333)
T 1elv_A          276 -------------------------------------------------------DSGGAFAVQDPNDKTKFYAAGLVSW  300 (333)
T ss_dssp             -------------------------------------------------------CTTCEEEEECSSCTTCEEEEEEEEE
T ss_pred             -------------------------------------------------------cCCCceEEEECCCCcEEEEEEEEee
Confidence                                                                   9999999975  35 8999999999


Q ss_pred             cCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        385 GVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       385 g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                      | .+|+  .  |+|||||+.|++||+++|..
T Consensus       301 g-~~C~--~--~~vyt~V~~y~~WI~~~~~~  326 (333)
T 1elv_A          301 G-PQCG--T--YGLYTRVKNYVDWIMKTMQE  326 (333)
T ss_dssp             C-SSTT--S--EEEEEEGGGGHHHHHHHHHH
T ss_pred             C-CCCC--C--CcEEeEHHHHHHHHHHHHhc
Confidence            9 8998  2  89999999999999998864

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-46  Score=383.72  Aligned_cols=235  Identities=23%  Similarity=0.420  Sum_probs=199.5

Q ss_pred             eeEecCCCCCCCCCCCCCcceeeEc-----cccceEEEeeCCeEEeeccceeeecCCC--CCCCccceEEEeceecCCCC
Q psy15063        102 TYFKSPHHPARPSSGLTCDYDVAIR-----QDVCAVRIEFEKVNLARKVGGVCDIDQL--RDTPVSELVLHLGDHDLTQL  174 (417)
Q Consensus       102 ~~~~~~g~~a~~~~~~~~PW~v~i~-----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~--~~~~~~~~~V~lG~~~~~~~  174 (417)
                      ..+|++|.+|.++.   |||+|+|.     .++|+||||+++|||||   |||+....  .......+.|++|.+++...
T Consensus       163 ~~RIvgG~~a~~g~---~Pw~v~l~~~~~~~~~CGGsLIs~~~VLTA---AHCv~~~~~~~~~~~~~~~V~lG~~~~~~~  236 (424)
T 3nxp_A          163 DGRIVEGSDAEIGM---SPWQVMLFRKSPQELLCGASLISDRWVLTA---AHCLLYPPWDKNFTENDLLVRIGKHSRTRY  236 (424)
T ss_dssp             SSCCCCCEECCTTS---CTTEEEEEETTTTEEEEEEEESSSSEEEEC---HHHHEEGGGTEECCGGGEEEEESCCBSSSC
T ss_pred             CCeeECCEECCCCC---CCCEEEEeecCCCCccceeEEEcCCEEEEh---HHhcCccccccccCcccEEEEeCccccccc
Confidence            45899999999984   99999994     35899999999999999   99995321  11244689999999998765


Q ss_pred             CCCCcEEEeeeEEEeCCCCC-CCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCc---c-CCCeEEEEEcCccCCC----
Q psy15063        175 NETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES---F-IGKRGHVVGWGVTSFP----  245 (417)
Q Consensus       175 ~~~~~q~~~V~~i~iHP~Y~-~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~---~-~~~~~~v~GWG~~~~~----  245 (417)
                      .....+.+.|++|++||+|+ ..++.||||||||++|+.|+++|+|||||.....   + .+..|+|+|||.+...    
T Consensus       237 ~~~~~~~~~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~~  316 (424)
T 3nxp_A          237 ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTAN  316 (424)
T ss_dssp             CTTTCEEECEEEEEECTTCBTTTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHHC
T ss_pred             CCCceeEEEEEEEEeCCCCCCCCCCcCCeEEEEecCccccCCcccccCCCCcccccccccCCCeEEEEecCCCCccCccc
Confidence            54356778899999999998 4578899999999999999999999999986531   2 6899999999986531    


Q ss_pred             -CCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC----CCCCccCCCCCcccccccccccccCccccCCccee
Q psy15063        246 -MGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE----TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRI  320 (417)
Q Consensus       246 -~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~----~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~  320 (417)
                       ....+..|+++.++++++..|+..+...+++.||||+...    +.++|+|                            
T Consensus       317 ~~~~~~~~L~~~~v~ii~~~~C~~~~~~~i~~~~iCAg~~~~~~~~~d~C~G----------------------------  368 (424)
T 3nxp_A          317 VGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEG----------------------------  368 (424)
T ss_dssp             ----CCSBCEEEEEEBCCHHHHHHTCSSCCCTTEEEESCCCBTTBCCCTTCS----------------------------
T ss_pred             cCCCCCccceEEEeeEEcHHHhhhhccCcCCCCeEecccCCCCCCCCccCCC----------------------------
Confidence             1124789999999999999999988778999999998643    4599999                            


Q ss_pred             ecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCCCeE
Q psy15063        321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDL  398 (417)
Q Consensus       321 ~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~p~v  398 (417)
                                                                ||||||++..  +++|+|+||+||| .+|+ ..+.|+|
T Consensus       369 ------------------------------------------DSGGPLv~~~~~~~~~~l~GIvS~G-~~C~-~~~~pgV  404 (424)
T 3nxp_A          369 ------------------------------------------DSGGPFVMKSPFNNRWYQMGIVSWG-EGCD-RDGKYGF  404 (424)
T ss_dssp             ------------------------------------------CTTCEEEEECTTTCCEEEEEEECCS-SCTT-TCCSCEE
T ss_pred             ------------------------------------------cCCCceEEEECCCCcEEEEEEEEeC-CCCC-CCCCCEE
Confidence                                                      9999999986  7899999999999 8999 7889999


Q ss_pred             EEecccchhHHhhhhc
Q psy15063        399 YTRVSEYIRWIHVNAI  414 (417)
Q Consensus       399 yt~Vs~~~~WI~~~~~  414 (417)
                      ||||+.|++||+++|+
T Consensus       405 yT~Vs~y~~WI~~~i~  420 (424)
T 3nxp_A          405 YTHVFRLKKWIQKVID  420 (424)
T ss_dssp             EEECTTCHHHHHHHHH
T ss_pred             EEEHHHHHHHHHHHHH
Confidence            9999999999999885

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=2.6e-46  Score=352.18  Aligned_cols=227  Identities=23%  Similarity=0.381  Sum_probs=188.5

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-cccceEEEeeCCeEEeeccceeeecCCCC-CCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-QDVCAVRIEFEKVNLARKVGGVCDIDQLR-DTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~-~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.+|.++   +|||+|.+. .+.|+||||+++|||||   |||+..... ......+.|++|.++.....  ..+.+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~CgGtLIs~~~VLTA---AHC~~~~~~~~~~~~~~~v~~G~~~~~~~~--~~~~~   72 (242)
T 2qy0_B            1 IIGGQKAKMG---NFPWQVFTNIHGRGGGALLGDRWILTA---AHTLYPKEHEAQSNASLDVFLGHTNVEELM--KLGNH   72 (242)
T ss_dssp             CBSCEECCTT---SSTTEEEEESSSEEEEEEETTTEEEEC---HHHHSCSSCCC----CCEEEESCSBHHHHH--HHCCC
T ss_pred             CCCCEECCCC---CCCcEEEEccCCCEEEEEEeCCEEEEc---HHhccccccccCCCceEEEEEeeccccccc--cccce
Confidence            5788888888   499999985 45899999999999999   999964322 12346789999988764321  12456


Q ss_pred             eeeEEEeCCCCCCC---CCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEE
Q psy15063        183 GVRRVLFHSHFHPF---VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEV  258 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~---~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v  258 (417)
                      .|.++++||+|+..   ...||||||||++|+.|+++++|||||...... .+..++++|||.+...   .+..|+++.+
T Consensus        73 ~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~---~~~~L~~~~~  149 (242)
T 2qy0_B           73 PIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK---IAHDLRFVRL  149 (242)
T ss_dssp             CEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSS---CCSBCEEEEE
T ss_pred             eEEEEEECCCCccCcCCCCCCcEEEEEECCCCcCCCCcceeecCCCccccCCCCeEEEEeeccCCCc---CCccceEEEE
Confidence            79999999999865   678999999999999999999999999876433 7889999999988643   5778999999


Q ss_pred             EEeChhhhhhhhhc-----cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        259 KVLSNARCSTVIEE-----SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       259 ~i~~~~~C~~~~~~-----~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      ++++.++|+..+..     .+++.||||+... +.++|+|                                        
T Consensus       150 ~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G----------------------------------------  189 (242)
T 2qy0_B          150 PVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQG----------------------------------------  189 (242)
T ss_dssp             EBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTT----------------------------------------
T ss_pred             EEeCHHHHHHHhccccccccCCCCEEeccCCCCCCccccC----------------------------------------
Confidence            99999999987653     4789999999875 7899999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                    ||||||++..  +++|+|+||+||| .+|+  . .|+|||||+.|++||+
T Consensus       190 ------------------------------DSGgPl~~~~~~~~~~~l~Gi~S~g-~~C~--~-~~~vyt~V~~y~~WI~  235 (242)
T 2qy0_B          190 ------------------------------DSGGVFAVRDPNTDRWVATGIVSWG-IGCS--R-GYGFYTKVLNYVDWIK  235 (242)
T ss_dssp             ------------------------------CTTCEEEEECTTTCCEEEEEEEEEC-SSSS--S-SCEEEEEGGGGHHHHH
T ss_pred             ------------------------------CCCCcEEEEECCCCeEEEEEEEEEC-CCcC--C-CCcEEEEHHHHHHHHH
Confidence                                          9999999963  6789999999999 7998  3 5899999999999999


Q ss_pred             hhhccC
Q psy15063        411 VNAIVT  416 (417)
Q Consensus       411 ~~~~~~  416 (417)
                      ++++..
T Consensus       236 ~~~~~~  241 (242)
T 2qy0_B          236 KEMEEE  241 (242)
T ss_dssp             HHTTC-
T ss_pred             HHhhcc
Confidence            998753

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=3.2e-46  Score=368.10  Aligned_cols=240  Identities=23%  Similarity=0.372  Sum_probs=195.7

Q ss_pred             cCCCCcccc-ccceeEecCCCCCCCCCCCCCcceeeEc-cccceEEEeeCCeEEeeccceeeecCCCCC-CCccceEEEe
Q psy15063         90 TYSCGDVSK-ERVTYFKSPHHPARPSSGLTCDYDVAIR-QDVCAVRIEFEKVNLARKVGGVCDIDQLRD-TPVSELVLHL  166 (417)
Q Consensus        90 ~~~CG~~~~-~~~~~~~~~g~~a~~~~~~~~PW~v~i~-~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~-~~~~~~~V~l  166 (417)
                      ...||.... .....+|++|.+|.++   +|||+|.+. .+.|+||||+++|||||   |||+...... .....+.|++
T Consensus        74 ~~~CG~~~~~~~~~~rIvgG~~a~~~---~~Pw~v~l~~~~~CgGsLIs~~~VLTA---AHCv~~~~~~~~~~~~~~V~~  147 (329)
T 1md8_A           74 LPVCGKPVNPVEQRQRIIGGQKAKMG---NFPWQVFTNIHGRGGGALLGDRWILTA---AHTLYPKEHEAQSNASLDVFL  147 (329)
T ss_dssp             EECCSCCSSCCCCC--CBSCCBCCTT---SCTTEEEEESSSEEEEEEETTTEEEEC---GGGTSCTTC-----CCCCEEE
T ss_pred             CCCCCCCCCcccccccccCCEECCCC---CCCCeEeeccCCCcceEEecCCEEEec---CCEEEeCCcccCCCceEEEEe
Confidence            356994322 2345689999999998   499999995 35799999999999999   9999643211 1346688999


Q ss_pred             ceecCCCCCCCCcEEEeeeEEEeCCCCCCC---CCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCcc
Q psy15063        167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPF---VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT  242 (417)
Q Consensus       167 G~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~---~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~  242 (417)
                      |.++.....  ..+.+.|+++++||+|+..   ++.||||||||++|+.|+++|+|||||...... .+..++++|||.+
T Consensus       148 G~~~~~~~~--~~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t  225 (329)
T 1md8_A          148 GHTNVEELM--KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM  225 (329)
T ss_dssp             SCSBHHHHH--HHCCCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCBC
T ss_pred             ccccccccc--cccceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCccccCCCCEEEEEeCCCC
Confidence            988754321  1245679999999999865   678999999999999999999999999765433 6889999999988


Q ss_pred             CCCCCCCCccceEEEEEEeChhhhhhhhhc-----cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCC
Q psy15063        243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE-----SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQP  316 (417)
Q Consensus       243 ~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~-----~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~  316 (417)
                      ...   .+..|+++.+++++..+|+..+..     .+++.||||+... +.++|+|                        
T Consensus       226 ~~~---~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~G------------------------  278 (329)
T 1md8_A          226 EEK---IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQG------------------------  278 (329)
T ss_dssp             SSS---BCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTT------------------------
T ss_pred             CCC---CCccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCC------------------------
Confidence            642   578899999999999999987652     4789999999875 7899999                        


Q ss_pred             cceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCC
Q psy15063        317 RRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPS  394 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~  394 (417)
                                                                    ||||||++..  +++|+|+||+||| .+|+  . 
T Consensus       279 ----------------------------------------------DSGGPL~~~~~~~~~~~l~GIvS~G-~~C~--~-  308 (329)
T 1md8_A          279 ----------------------------------------------DSGGVFAVRDPNTDRWVATGIVSWG-IGCS--R-  308 (329)
T ss_dssp             ----------------------------------------------TTTCEEEEEETTTTEEEEEEEEEEC-SSSS--S-
T ss_pred             ----------------------------------------------ccccceEEEECCCCcEEEEEEEEEC-CCcC--C-
Confidence                                                          9999999964  6899999999999 8998  3 


Q ss_pred             CCeEEEecccchhHHhhhhc
Q psy15063        395 YPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       395 ~p~vyt~Vs~~~~WI~~~~~  414 (417)
                      .|+|||||+.|++||+++|+
T Consensus       309 ~~gvyT~V~~y~~WI~~~i~  328 (329)
T 1md8_A          309 GYGFYTKVLNYVDWIKKEME  328 (329)
T ss_dssp             SCEEEEEGGGTHHHHHHHHH
T ss_pred             CCcEEEEHHHHHHHHHHHHh
Confidence            58999999999999999875

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.5e-46  Score=358.90  Aligned_cols=225  Identities=21%  Similarity=0.353  Sum_probs=181.8

Q ss_pred             cCCCCccccccceeEecCCCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEE
Q psy15063         90 TYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLH  165 (417)
Q Consensus        90 ~~~CG~~~~~~~~~~~~~g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~  165 (417)
                      .+.||.....        |.++.++   +|||+|+|..    ++|+||||+++|||||   |||+.+.      ..+.|+
T Consensus        46 ~c~CG~~~~~--------g~~a~~~---~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTA---AHC~~~~------~~~~V~  105 (283)
T 3f1s_B           46 QCACGVLTSE--------KRAPDLQ---DLPWQVKLTNSEGKDFCGGVIIRENFVLTT---AKCSLLH------RNITVK  105 (283)
T ss_dssp             TTCTTCCCC-------------------CCTTEEEEECTTSCEEEEEEEEETTEEEEC---HHHHTSC------SSCEEE
T ss_pred             ccccCccccC--------Ccccccc---ccCCEEEEEecCCCeeeccEEecCCEEEEc---HHhcCcc------CceEEE
Confidence            4689933221        7777777   5999999953    5899999999999999   9999642      578999


Q ss_pred             eceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCC---c-cCCCeEEEEEcCc
Q psy15063        166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE---S-FIGKRGHVVGWGV  241 (417)
Q Consensus       166 lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~-~~~~~~~v~GWG~  241 (417)
                      +|.++...    ..+.+.|.++++||+|+..+.+||||||||++|+.|+++|+|||||....   . ..+..++++|||.
T Consensus       106 ~G~~~~~~----~~~~~~v~~i~~Hp~y~~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~  181 (283)
T 3f1s_B          106 TYFNRTSQ----DPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR  181 (283)
T ss_dssp             ECTTC-CC----CCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBC
T ss_pred             EeeeeCCC----CcEEEEeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCCEEeEECCCCccccccccCCCEEEEEECCC
Confidence            99876643    56888999999999999999999999999999999999999999998652   1 2789999999998


Q ss_pred             cCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceee
Q psy15063        242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRII  321 (417)
Q Consensus       242 ~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~  321 (417)
                      .  . +..+..|+++.+++++.++|+..+...+++.||||+...+  .|.+                             
T Consensus       182 ~--~-~~~~~~L~~~~v~~~~~~~C~~~~~~~~~~~~~Ca~~~~~--~~~g-----------------------------  227 (283)
T 3f1s_B          182 N--G-TDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSSVA--AMHW-----------------------------  227 (283)
T ss_dssp             C----------CEEEEEEEECHHHHHHHHTSCCCTTEEEEECSSC--GGGB-----------------------------
T ss_pred             C--C-CCCCceeeEEEEeEeCHHHHhhhhcCCCCCCeEcccCCCC--CCCC-----------------------------
Confidence            2  2 2468899999999999999999988789999999986543  5567                             


Q ss_pred             cccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEe
Q psy15063        322 LGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTR  401 (417)
Q Consensus       322 ~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~  401 (417)
                                                               ||||||++..+++|+|+||+||| . |. .++.|+||||
T Consensus       228 -----------------------------------------DSGgPlv~~~~~~~~l~GIvS~g-~-c~-~~~~p~vyt~  263 (283)
T 3f1s_B          228 -----------------------------------------MDGSVVTREHRGSWFLTGVLGSQ-P-VG-GQAHMVLVTK  263 (283)
T ss_dssp             -----------------------------------------CTTCEEEEECSSCEEEEEEECCC-S-GG-GCSSEEEEEE
T ss_pred             -----------------------------------------CCCCcEEEEECCEEEEEEEEEeC-C-CC-CCCcceEEEE
Confidence                                                     99999999889999999999998 4 66 5889999999


Q ss_pred             cccchhHHhhhhccC
Q psy15063        402 VSEYIRWIHVNAIVT  416 (417)
Q Consensus       402 Vs~~~~WI~~~~~~~  416 (417)
                      |+.|++||+++|+..
T Consensus       264 V~~y~~WI~~~~~~~  278 (283)
T 3f1s_B          264 VSRYSLWFKQIMNAH  278 (283)
T ss_dssp             GGGGHHHHHHHHTC-
T ss_pred             hHHhHHHHHHHhhcc
Confidence            999999999998754

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=3.9e-45  Score=344.19  Aligned_cols=221  Identities=25%  Similarity=0.478  Sum_probs=189.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCC-CCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLN-ETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~-~~~~q  180 (417)
                      |++|.+|.+ .   |||+|+|.   .++|+||||+++|||||   |||+.+.    ....+.|++|.+++.... ....+
T Consensus         1 IvgG~~a~~-~---~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AHC~~~~----~~~~~~v~~G~~~~~~~~~~~~~~   69 (240)
T 1si5_H            1 VVNGIPTRT-N---IGWMVSLRYRNKHICGGSLIKESWVLTA---RQCFPSR----DLKDYEAWLGIHDVHGRGDEKCKQ   69 (240)
T ss_dssp             CBSCEECSS-C---CTTEEEEEESSSEEEEEEEEETTEEEEE---GGGCSSS----CGGGEEEEESCSBSSCSTTTTTCE
T ss_pred             CCCCeeCCC-C---CCeEEEEEeCCCeEEEEEEeeCCEEEEh---HHhcCCC----CCccEEEEEeeeecCCCCCCCcce
Confidence            467888877 4   99999995   46999999999999999   9999653    247799999999887542 12568


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      .+.|.+++.||+      .||||||||++|+.|+++++|||||...... .+..++++|||.+....  .+..|+++.++
T Consensus        70 ~~~v~~~~~~p~------~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~--~~~~L~~~~~~  141 (240)
T 1si5_H           70 VLNVSQLVYGPE------GSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLIN--YDGLLRVAHLY  141 (240)
T ss_dssp             EEEEEEEEECSS------TTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSS--CCCBCEEEEEE
T ss_pred             EEEEEEEEcCCC------CCcEEEEEECCccccCCceeccCcCCcCCCCCCCCEEEEEEeCCCCCCC--CCCeeEEEEEe
Confidence            889999999996      6899999999999999999999999875444 78999999999987543  67899999999


Q ss_pred             EeChhhhhhhhhcc--CCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        260 VLSNARCSTVIEES--IGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       260 i~~~~~C~~~~~~~--~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      ++++++|+..+...  +.+.||||+... +.++|+|                                            
T Consensus       142 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G--------------------------------------------  177 (240)
T 1si5_H          142 IMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEG--------------------------------------------  177 (240)
T ss_dssp             EECGGGTCC-------CCTTEEEEECSSSCCBCCTT--------------------------------------------
T ss_pred             ecCHHHhhhhhcCCccCCCCEEeecCCCCCCEeccC--------------------------------------------
Confidence            99999999887653  889999999876 7899999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                                ||||||++..+++|+|+||+||| .+|+ .++.|+|||||+.|++||++++...
T Consensus       178 --------------------------DSGgPL~~~~~~~~~l~Gi~S~g-~~C~-~~~~p~vyt~V~~y~~WI~~~i~~~  229 (240)
T 1si5_H          178 --------------------------DYGGPLVCEQHKMRMVLGVIVPG-RGCA-IPNRPGIFVRVAYYAKWIHKIILTY  229 (240)
T ss_dssp             --------------------------CTTCEEEEECSSSEEEEEEECSC-SCSS-CTTCCEEEEEGGGGHHHHHHHHSSC
T ss_pred             --------------------------CCCCcEEEEECCcEEEEEEEEEC-CCCC-CCCCCcEEEEHHHHHHHHHHHHhcc
Confidence                                      99999999988999999999999 8998 6789999999999999999998753

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=3.5e-45  Score=342.14  Aligned_cols=219  Identities=20%  Similarity=0.309  Sum_probs=194.8

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|++.   .++|+||||+++|||||   |||+.+.    +...+.|++|.+++..    ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLIs~~~VLTA---AHC~~~~----~~~~~~v~~G~~~~~~----~~~~   66 (235)
T 3h7t_A            1 IIGGKKSDIT---KEPWAVGVLVDEKPFCGGSILTANFVITA---AQCVDGT----KPSDISIHYGSSYRTT----KGTS   66 (235)
T ss_dssp             CBTCEECCTT---TSTTEEEEEETTSCCEEEEESSSSEEEEC---HHHHTTC----CGGGEEEEESCSBSSS----SSEE
T ss_pred             CCCCEECCCC---CCCcEEEEecCCCceEeEEEeeCCEEEEC---HHHCCCC----CCCeeEEEcCcccccc----CCce
Confidence            5788888888   499999993   45899999999999999   9999642    4578999999988763    4478


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCC-ceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTG-TIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~-~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      +.|.++++| +|++....||||||+|++|+.|++ .++|||||...... .+..++++|||.+.......+..|+++.++
T Consensus        67 ~~v~~i~~h-~y~~~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~  145 (235)
T 3h7t_A           67 VMAKKIYIV-RYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFT  145 (235)
T ss_dssp             EEEEEEEEC-SCBTTTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEE
T ss_pred             eeeeeEEee-ecCCCCCCCCeEEEEeccccccCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCc
Confidence            899999999 999999999999999999999999 99999999887433 899999999999886543578899999999


Q ss_pred             EeChhhhhhhhhcc-----CCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCc
Q psy15063        260 VLSNARCSTVIEES-----IGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPW  333 (417)
Q Consensus       260 i~~~~~C~~~~~~~-----~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~  333 (417)
                      +++..+|+..+...     +.+.||||+... +.++|+|                                         
T Consensus       146 ~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-----------------------------------------  184 (235)
T 3h7t_A          146 VVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYG-----------------------------------------  184 (235)
T ss_dssp             EECHHHHHHHHHTTTCGGGCSTTEEEECBTTTTBBCCTT-----------------------------------------
T ss_pred             eeCHHHHHHHhhhcccCccccCCeEecCCCCCCCccccC-----------------------------------------
Confidence            99999999988763     889999999877 8899999                                         


Q ss_pred             EEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhh
Q psy15063        334 QVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       334 ~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                                                   ||||||++  +++  |+||+||| .+|+  .+.|+|||||+.|++||++++
T Consensus       185 -----------------------------DsGgPl~~--~~~--l~Gi~S~g-~~C~--~~~p~vyt~v~~~~~WI~~~i  228 (235)
T 3h7t_A          185 -----------------------------DAGDPAVQ--NGT--LVGVASYI-SSMP--SEFPSVFLRVGYYVLDIKDII  228 (235)
T ss_dssp             -----------------------------CTTCEEEE--TTE--EEEEECCC-TTCC--TTSCEEEEEGGGGHHHHHHHH
T ss_pred             -----------------------------CCCCceee--CCe--EEEEEEec-CCCC--CCCCceEEEHHHHHHHHHHHH
Confidence                                         99999999  776  99999999 7899  489999999999999999998


Q ss_pred             cc
Q psy15063        414 IV  415 (417)
Q Consensus       414 ~~  415 (417)
                      +.
T Consensus       229 ~~  230 (235)
T 3h7t_A          229 SG  230 (235)
T ss_dssp             TT
T ss_pred             hC
Confidence            74

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=3.4e-45  Score=341.10  Aligned_cols=216  Identities=25%  Similarity=0.408  Sum_probs=186.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.++.++   +|||+|++.       .++|+||||+++|||||   |||+.        ..+.|++|.+++..... 
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTA---AhC~~--------~~~~v~~G~~~~~~~~~-   65 (226)
T 4ag1_A            1 IIGGTECKPH---SRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTA---AHCAG--------RSITVTLGAHNITEEED-   65 (226)
T ss_dssp             CBSCEECCTT---SSTTEEEEEEECSSSSCEEEEEEEEETTEEEEC---GGGCC--------SEEEEEESCSBTTSCCT-
T ss_pred             CCCCEECCCC---CCCcEEEEEEEcCCCcccEEEEEEEeCCEEEEC---cccCC--------CCeEEEeCCcccCCCCC-
Confidence            5688888888   499999995       46899999999999999   99983        46899999998876655 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      ..+.+.|.++++||+|+..+..||||||||++|+.|++.++|||||...... .+..++++|||.+.... ..+..|+++
T Consensus        66 ~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~  144 (226)
T 4ag1_A           66 TWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLK-PGSDTLQEV  144 (226)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSSCCCCCC-----CCTTCEEEEEESSBSSTTS-CBCSBCEEE
T ss_pred             cceEEEEEEEEeCCCCCCCCCcCcEEEEEECCCCccCCceeccccCCcccCCCCCCEEEEEECCCCCCCC-CCCCEeEEE
Confidence            6688999999999999999999999999999999999999999999876644 79999999999987654 568899999


Q ss_pred             EEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        257 EVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      .+++++.+.|+. +.....+.||||+... +.++|+|                                           
T Consensus       145 ~~~~~~~~~C~~-~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  180 (226)
T 4ag1_A          145 KLRLMDPQACSH-FRDFDHNLQLCVGNPRKTKSAFKG-------------------------------------------  180 (226)
T ss_dssp             EEEEECGGGGTT-STTCCTTTEEEESCTTSCCBCCTT-------------------------------------------
T ss_pred             EEEEcChHHccc-ccCcCccceEeeccCCCCCcCccC-------------------------------------------
Confidence            999999999984 3336688999999865 7899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                 ||||||++  ++  +|+||+||| .+|. . . |+|||||+.|++||+++|+.
T Consensus       181 ---------------------------DsGgPl~~--~~--~l~Gi~S~g-~~c~-~-~-p~vyt~v~~~~~WI~~~i~~  225 (226)
T 4ag1_A          181 ---------------------------DSGGPLLC--AG--VAQGIVSYG-RSDA-K-P-PAVFTRISHYRPWINQILQA  225 (226)
T ss_dssp             ---------------------------CTTCEEEE--TT--EEEEEEEEC-BTTC-C-S-CEEEEEHHHHHHHHHHHHHH
T ss_pred             ---------------------------CCCCceEE--cC--EEEEEEEEC-CCCC-C-C-CCEEEEhHHHHHHHHHHHhc
Confidence                                       99999999  54  599999999 7898 3 3 99999999999999999863

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=5.2e-45  Score=342.07  Aligned_cols=222  Identities=26%  Similarity=0.395  Sum_probs=192.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCc
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSH  179 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~  179 (417)
                      |++|.++.++   +|||+|++.     .++|+||||+++|||||   |||+.        ..+.|++|.++.........
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTA---AHC~~--------~~~~v~~g~~~~~~~~~~~~   66 (238)
T 4e7n_A            1 IIGGDECNIN---EHRFLVALYTSRSRTLFCGGTLINQEWVLTA---AHCDR--------KNFRIKLGMHSKKVPNEDEQ   66 (238)
T ss_dssp             CBSCEECCTT---SCTTEEEEECTTTCCEEEEEEECSSSEEEEC---GGGCC--------SSCEEEESCSCSSSCCTTCE
T ss_pred             CCCCeeCCCC---CcCcEEEEEECCCCCEEEEEEEecCCEEEEh---HHcCC--------CCCeEEeceeeccccCCCce
Confidence            5688888887   599999994     34899999999999999   99985        45789999988776554344


Q ss_pred             EEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        180 VRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       180 q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      ....+..+++||+|+.....||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.++
T Consensus        67 ~~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~  145 (238)
T 4e7n_A           67 TRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPS-VGSVCRIMGWGRISPTEGTYPDVPHCVNIN  145 (238)
T ss_dssp             EECEEEEECSSTTCCCCSSSCCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEESSCSSSSSCCCCSSCEEEEEE
T ss_pred             eEeeeeeEEcCCCCCCCCCCCcEEEEEeCCCccCCCceeeeeCCCCCCC-CCCEEEEEECCCCCCCCCCCCccceEeecc
Confidence            4555777778999999999999999999999999999999999988665 799999999999886554578899999999


Q ss_pred             EeChhhhhhhhhc---cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        260 VLSNARCSTVIEE---SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       260 i~~~~~C~~~~~~---~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      +++.++|+..+..   .+.+.||||+... +.++|+|                                           
T Consensus       146 ~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  182 (238)
T 4e7n_A          146 LLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKG-------------------------------------------  182 (238)
T ss_dssp             EECGGGGTTTCGGGCCCSCCSEEEEECTTCSCBCCTT-------------------------------------------
T ss_pred             ccCHHHHhhhcccccCCCCCCeEEeCCCCCCCccCCC-------------------------------------------
Confidence            9999999998863   6789999999665 7899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                 ||||||++  +++  |+||+|||...|+ ..+.|+|||||+.|++||++++..
T Consensus       183 ---------------------------DSGgPL~~--~~~--l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI~~~i~~  230 (238)
T 4e7n_A          183 ---------------------------DSGGPLIC--NGQ--FQGIASWGDDPCA-QPHKPAAYTKVFDHLDWIENIIAG  230 (238)
T ss_dssp             ---------------------------CTTCEEEE--TTE--EEEEEEECCSSTT-CTTCCEEEEESGGGHHHHHHHHTT
T ss_pred             ---------------------------CCCcceEE--CCE--EEEEEEEeCCCCC-CCCCCeEEEEhHHHHHHHHHHHhc
Confidence                                       99999999  665  9999999944498 778999999999999999999864


Q ss_pred             C
Q psy15063        416 T  416 (417)
Q Consensus       416 ~  416 (417)
                      .
T Consensus       231 ~  231 (238)
T 4e7n_A          231 N  231 (238)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=7.5e-45  Score=340.14  Aligned_cols=221  Identities=27%  Similarity=0.387  Sum_probs=191.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.++.++   +|||+|++.   .++|+||||+++|||||   |||+.        ..+.|++|.++...........
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLI~~~~VLTA---AHC~~--------~~~~v~~g~~~~~~~~~~~~~~   66 (234)
T 3s69_A            1 VIGGDECNIN---EHRSLVAFFNSTGFFCSGTLINEEWVLTA---AHCDN--------TNFQMKLGVHSKKVLNEDEQTR   66 (234)
T ss_dssp             CBSCEECCTT---SCTTEEEEECSSCEEEEEEEEETTEEEEC---GGGCC--------SSCEEEESCCCSSSCCTTCEEE
T ss_pred             CCCCccCCCC---CCceEEEEeeCCCeEEeEEEeeCCEEEEc---hhhCC--------CCceEEecccccccccCCccee
Confidence            5788888888   499999994   45999999999999999   99984        4578999998877655423444


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      ..+..++.||+|+.....||||||||++|+.|+++++|||||..... .+..++++|||.+.......+..|+++.++++
T Consensus        67 ~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~  145 (234)
T 3s69_A           67 NPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPS-VGSVCHIMGWGSITPIKVTYPDVPYCAYINLL  145 (234)
T ss_dssp             CEEEEEECTTCCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEESSCSSSSSCCCCSSCEEEEEEEE
T ss_pred             eceEEEECCCccCCCCCcccEEEEeeCCcCCCCCcceeeecCCCCCC-CCCEEEEEECCCCCCCCcCcccccceeEEeec
Confidence            45667777999999999999999999999999999999999987765 79999999999987655457889999999999


Q ss_pred             Chhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        262 SNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       262 ~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      +...|+..+.. .+...||||+... +.++|+|                                               
T Consensus       146 ~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G-----------------------------------------------  178 (234)
T 3s69_A          146 DDAVCQAGYPELLTEYRTLCAGILEGGKDTCGG-----------------------------------------------  178 (234)
T ss_dssp             CHHHHHHHCTTCCTTSCEEEEECTTCSCBCCTT-----------------------------------------------
T ss_pred             CHHHHhhhcccccCCcceEeccCCCCCCccCCC-----------------------------------------------
Confidence            99999998874 6788999999766 8899999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                             ||||||++  +++  |+||+|||...|+ ..+.|+|||||+.|++||++++..
T Consensus       179 -----------------------DSGgPL~~--~~~--l~Gi~S~g~~~C~-~~~~p~vyt~V~~~~~WI~~~i~~  226 (234)
T 3s69_A          179 -----------------------DSGGPLIC--NGQ--FQGIVSFGAHPCG-QGLKPGVYTKVFDYNHWIQSIIAG  226 (234)
T ss_dssp             -----------------------CTTCEEEE--TTE--EEEEEEECCSSTT-CTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             -----------------------CCccceEE--cCE--EEEEEEEcccccC-CCCCCcEEeeHHHHHHHHHHHhcC
Confidence                                   99999999  665  9999999944599 678999999999999999998864

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=4.1e-45  Score=339.91  Aligned_cols=215  Identities=26%  Similarity=0.420  Sum_probs=189.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.++.++   +|||+|+|.       .++|+||||+++|||||   |||+.        ..+.|++|.+++..... 
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTA---AhC~~--------~~~~v~~g~~~~~~~~~-   65 (224)
T 3rp2_A            1 IIGGVESIPH---SRPYMAHLDIVTEKGLRVICGGFLISRQFVLTA---AHCKG--------REITVILGAHDVRKRES-   65 (224)
T ss_dssp             CBSCEECCTT---SCTTEEEEEEECTTSCEEEEEEEESSSSEEEEC---GGGCC--------SEEEEEESCSBTTSCCT-
T ss_pred             CCCCEECCCC---CCCcEEEEEEecCCCcEEEEEeEEeeCCEEEEc---hhcCC--------CCcEEEEeccccCcCCC-
Confidence            5788888888   499999994       45899999999999999   99983        46899999998876655 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      ..+.+.|.++++||+|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++
T Consensus        66 ~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~  144 (224)
T 3rp2_A           66 TQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRD-PTSYTLREV  144 (224)
T ss_dssp             TCEEEEEEEEEECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTE-EECSBCEEE
T ss_pred             CcEEEEEEEEEECCCccCCCCCccEEEEEcCCCcccCCcccceecCCcccCCCCCCEEEEEeCCCCCCCC-CCCceeeEe
Confidence            6788999999999999999999999999999999999999999999887644 89999999999987654 467789999


Q ss_pred             EEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        257 EVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      .+++++.++|+. +.....+.|||++... ..++|+|                                           
T Consensus       145 ~~~~~~~~~C~~-~~~~~~~~~~Ca~~~~~~~~~C~G-------------------------------------------  180 (224)
T 3rp2_A          145 ELRIMDEKACVD-YRYYEYKFQVCVGSPTTLRAAFMG-------------------------------------------  180 (224)
T ss_dssp             EEEEECGGGTTT-TTCCCTTTEEEECCTTSCCBCCTT-------------------------------------------
T ss_pred             eeeecChHHhcc-ccccCcCCEEEecCCCCCCeeccC-------------------------------------------
Confidence            999999999987 4446788999999866 6899999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                 ||||||++  ++  +|+||+||| .+|.  .. |++||||+.|++||+++|+
T Consensus       181 ---------------------------DsGgPl~~--~~--~l~Gi~S~g-~~c~--~~-p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          181 ---------------------------DSGGPLLC--AG--VAHGIVSYG-HPDA--KP-PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             ---------------------------TTTCEEEE--TT--EEEEEEEEC-CTTC--CS-CEEEEEHHHHHHHHHHHHC
T ss_pred             ---------------------------CCCCeEEE--cc--eeeEEEEEC-CCCC--CC-CcEEEEHHHhHHHHHHHhC
Confidence                                       99999999  55  599999999 7888  33 9999999999999999874

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=7.4e-45  Score=340.37  Aligned_cols=220  Identities=25%  Similarity=0.407  Sum_probs=191.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCc
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSH  179 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~  179 (417)
                      |++|.+|.++   +|||+|++.     .++|+||||+++|||||   |||+.        ..+.|++|.++.........
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTA---AHC~~--------~~~~v~~g~~~~~~~~~~~~   66 (234)
T 3s9c_A            1 VVGGDECNIN---EHPFLVALYTSASSTIHCAGALINREWVLTA---AHCDR--------RNIRIKLGMHSKNIRNEDEQ   66 (234)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEEEEEETTEEEEC---GGGCC--------TTEEEEESCSSSSSCCTTCE
T ss_pred             CCCCeeCCCC---CCCeEEEEEECCCCcEEEeeEEeeCCEEEEc---hhhcC--------CCceEEEeecccccccCCcc
Confidence            5788888888   599999994     34799999999999999   99984        45899999998876554234


Q ss_pred             EEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        180 VRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       180 q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      ....+..+++||.|+.....||||||||++|+.|+++++|||||..... .+..++++|||.+...  ..+..|+++.++
T Consensus        67 ~~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~~-~~~~~~v~GwG~~~~~--~~~~~l~~~~~~  143 (234)
T 3s9c_A           67 IRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRG-VGSRCRIMGWGKISTT--TYPDVPHCTNIF  143 (234)
T ss_dssp             EECEEEEECCSSCSSTTCGGGCCEEEEESSCCCCBTTBCCCBCCSSCCC-TTCEEEEEESSCSBTT--BCCSSCEEEEEE
T ss_pred             eEEeeeEEEeCCCCCCCCCcCceEEEEECCccccCCcccccccCCCCCC-CCCeEEEEeeCCCCCC--CCCccccccceE
Confidence            4555677778999999999999999999999999999999999988765 6999999999998765  478899999999


Q ss_pred             EeChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEE
Q psy15063        260 VLSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAI  337 (417)
Q Consensus       260 i~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~  337 (417)
                      +++...|+..+.. .+.+.||||+... +.++|+|                                             
T Consensus       144 ~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G---------------------------------------------  178 (234)
T 3s9c_A          144 IVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHG---------------------------------------------  178 (234)
T ss_dssp             EECGGGTTTTCTTSCTTSSEEEEECTTSSCBCCTT---------------------------------------------
T ss_pred             ecCHHHhhhcccCCCCCcceEEeecCCCCCccCCC---------------------------------------------
Confidence            9999999998874 7889999999765 8899999                                             


Q ss_pred             ccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        338 ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       338 ~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                               ||||||++  ++.  |+||+|||...|+ ..+.|+|||||+.|++||+++|.-.
T Consensus       179 -------------------------DSGgPl~~--~~~--l~Gi~S~g~~~C~-~~~~p~vyt~V~~y~~WI~~~i~~~  227 (234)
T 3s9c_A          179 -------------------------DSGGPLIC--NGE--MHGIVAGGSEPCG-QHLKPAVYTKVFDYNNWIQSIIAGN  227 (234)
T ss_dssp             -------------------------CTTCEEEE--TTE--EEEEEEECCSSTT-CTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             -------------------------CCCCeEEE--eCC--cEEEEEEeCCCCC-CCCCCcEEEEhHHhHHHHHHHHcCC
Confidence                                     99999999  665  9999999954599 7789999999999999999998643

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=7.9e-45  Score=338.14  Aligned_cols=219  Identities=24%  Similarity=0.293  Sum_probs=189.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEee
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGV  184 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V  184 (417)
                      |++|.+|.++   +|||+|++. +.|+||||+++|||||   |||+.+..   ....+.|++|.+++...   ..+.+.|
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~-~~CgGtLI~~~~VLTA---AHC~~~~~---~~~~~~v~~G~~~~~~~---~~~~~~v   67 (224)
T 3beu_A            1 VVGGTRAAQG---EFPFMVRLS-MGCGGALYAQDIVLTA---AHCVSGSG---NNTSITATGGVVDLQSS---SAVKVRS   67 (224)
T ss_dssp             CBTCEECCTT---TSTTEEEET-TTEEEEEEETTEEEEC---GGGSCSSE---EBCCCEEEESCSBTTCT---TCEEEEE
T ss_pred             CCCCeECCCC---CCCEEEEEC-CceeEEEeeCCEEEEC---hhhcCCCC---CcceEEEEeeEeecCCC---CceEEEE
Confidence            5788888888   499999996 6899999999999999   99996531   23578999999887653   3378889


Q ss_pred             eEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChh
Q psy15063        185 RRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNA  264 (417)
Q Consensus       185 ~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~  264 (417)
                      .++++||+|+..+..||||||||++|+.+    .|+||+..... .+..++++|||.+.... ..+..|+++.+++++++
T Consensus        68 ~~i~~hp~y~~~~~~~DIALl~L~~~v~~----~~i~l~~~~~~-~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~  141 (224)
T 3beu_A           68 TKVLQAPGFTKETYGKDWALIKLAQPINQ----PTLKIATTTAY-NQGTFTVAGWGANREGG-SQQRYLLKANVPFVSDA  141 (224)
T ss_dssp             EEEEECTTCCCGGGSCCCEEEEESSCCCS----CCCEECCSSTT-SSSEEEEEESSCSSTTC-CCCSBCEEEEEEEECHH
T ss_pred             EEEEeCCCcCCCcCCCCEEEEEeCCCCCC----Ccccccccccc-CCCEEEEEecCccCCCC-cccceeeEeeCcccCHH
Confidence            99999999999889999999999999964    58899876443 56699999999987654 56789999999999999


Q ss_pred             hhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCe
Q psy15063        265 RCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGM  342 (417)
Q Consensus       265 ~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~  342 (417)
                      +|+..+.. .+.+.||||+... +.++|+|                                                  
T Consensus       142 ~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G--------------------------------------------------  171 (224)
T 3beu_A          142 ACRSSSSFILVANEMICAGYDTKQEDTCQG--------------------------------------------------  171 (224)
T ss_dssp             HHHHHCSSCCCGGGEEEECCSSSSCBCCTT--------------------------------------------------
T ss_pred             HhhhhcCCccCCCCeEEeccCCCCCcCCCC--------------------------------------------------
Confidence            99988763 5788999999765 7899999                                                  


Q ss_pred             eeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        343 FFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       343 ~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                          ||||||++.. +++|+|+||+||| .+|+ ..+.|+|||||+.|++||++++.
T Consensus       172 --------------------DsGgPl~~~~~~~~~~l~Gi~S~g-~~C~-~~~~p~vyt~V~~~~~WI~~~~~  222 (224)
T 3beu_A          172 --------------------DSGGPMFRKDNADEWVQVGIVSWG-EGCA-RKGKYGVYTEVSTFASAIASAAR  222 (224)
T ss_dssp             --------------------CTTCEEEEECTTSCEEEEEEEEEE-SSSS-CTTCCEEEEEHHHHHHHHHHHHT
T ss_pred             --------------------cCCCeeEEecCCCCEEEEEEeccC-CCCC-CCCCCeEEEEHHHHHHHHHHHHh
Confidence                                9999999987 7899999999999 7898 67899999999999999999886

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=7.2e-45  Score=340.10  Aligned_cols=217  Identities=27%  Similarity=0.442  Sum_probs=188.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc-------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ-------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~-------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.++   +|||+|+|..       ++|+||||+++|||||   |||+.+      ...+.|++|.++...    
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTA---AHC~~~------~~~~~v~~G~~~~~~----   64 (230)
T 2hlc_A            1 IINGYEAYTG---LFPYQAGLDITLQDQRRVWCGGSLIDNKWILTA---AHCVHD------AVSVVVYLGSAVQYE----   64 (230)
T ss_dssp             CBTCEECCTT---TSTTEEEEEEEETTSCEEEEEEEEEETTEEEEC---HHHHTT------EEEEEEEESCSBTTC----
T ss_pred             CCCCeECCCC---CCCcEEEEEEEecCCCCEEEEEEEeeCCEEEEC---HHHCCC------CcceEEEEeeeecCC----
Confidence            5788888887   5999999853       4899999999999999   999964      367899999987754    


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCC---ccCCCeEEEEEcCccCCCCCCCCccce
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE---SFIGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~---~~~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                      ..+.+.|.++++||+|+..+..||||||||+ |+.|+++++|||||....   ...+..++++|||.+....    ..|+
T Consensus        65 ~~~~~~v~~i~~hp~y~~~~~~~DiALl~L~-~~~~~~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~~----~~l~  139 (230)
T 2hlc_A           65 GEAVVNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDT----VILQ  139 (230)
T ss_dssp             CSEEEECSEEEECTTCBTTTTBTCCEEEECS-CCCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCC----CBCE
T ss_pred             CCeEEEEEEEEECCCCCCCCccccEEEEEec-CCCcCCcEeeeEcCCccccccccCCcEEEEEeeeecCCCC----ceeE
Confidence            2378889999999999999999999999999 999999999999998753   2278899999999876432    6899


Q ss_pred             EEEEEEeChhhhhhhhhc-cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCc
Q psy15063        255 KLEVKVLSNARCSTVIEE-SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPW  333 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~~~~-~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~  333 (417)
                      ++.+++++..+|+..+.. .+.+.|||++...+.++|+|                                         
T Consensus       140 ~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~C~G-----------------------------------------  178 (230)
T 2hlc_A          140 YTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFG-----------------------------------------  178 (230)
T ss_dssp             EEEEEEECHHHHHTTSCTTSSCTTEEEECCTTSCBCCTT-----------------------------------------
T ss_pred             EEEEEEeCHHHhhhhhCCCcccCCeEEecCCCCCCcCCC-----------------------------------------
Confidence            999999999999988865 68899999998768899999                                         


Q ss_pred             EEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHhhh
Q psy15063        334 QVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIHVN  412 (417)
Q Consensus       334 ~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~~~  412 (417)
                                                   ||||||++..+  ++|+||+|||. .+|.  .+.|++||||+.|++||+++
T Consensus       179 -----------------------------DSGgPl~~~~~--~~l~Gi~S~g~~~~C~--~~~p~vyt~V~~~~~WI~~~  225 (230)
T 2hlc_A          179 -----------------------------DSGGPFVLSDK--NLLIGVVSFVSGAGCE--SGKPVGFSRVTSYMDWIQQN  225 (230)
T ss_dssp             -----------------------------CTTCEEEEGGG--TEEEEEEEECCTTCTT--SCCCEEEEEGGGGHHHHHHH
T ss_pred             -----------------------------CCCCeeEECcC--CEEEEEEEEeCCCCCC--CCCCCEEEEhHHhHHHHHHh
Confidence                                         99999999543  47999999984 4897  78999999999999999999


Q ss_pred             hccC
Q psy15063        413 AIVT  416 (417)
Q Consensus       413 ~~~~  416 (417)
                      ++.+
T Consensus       226 ~~~~  229 (230)
T 2hlc_A          226 TGIK  229 (230)
T ss_dssp             HCCC
T ss_pred             hCcC
Confidence            8753

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=2.5e-45  Score=390.13  Aligned_cols=241  Identities=26%  Similarity=0.446  Sum_probs=192.5

Q ss_pred             ccccCCCCccccccceeEecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCcc
Q psy15063         87 VNITYSCGDVSKERVTYFKSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVS  160 (417)
Q Consensus        87 ~~~~~~CG~~~~~~~~~~~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~  160 (417)
                      |.....||..    ...+|++|.+|.++   +|||+|+|.      .++|+||||+++|||||   |||+.+..   .+.
T Consensus       374 C~~~~~Cg~~----~~~rIvgG~~a~~~---~~Pw~v~L~~~~~~~~~~CgGsLIs~~~VLTA---AHC~~~~~---~~~  440 (625)
T 2f83_A          374 CKMDNECTTK----IKPRIVGGTASVRG---EWPWQVTLHTTSPTQRHLCGGSIIGNQWILTA---AHCFYGVE---SPK  440 (625)
T ss_dssp             GGGSCSSCSC----CCSCCCSSSSCCTT---SSTTEEEEEECSSSSEEEEEEEECSSSEEEEC---GGGGSSCC---CGG
T ss_pred             cccccccCCC----CCCceECCEECCCC---CCCeEEEEEEecCCCcEEEEEEEECCCEEEEc---HHhCCCCC---CCc
Confidence            4444578832    34589999999988   599999994      35899999999999999   99996531   346


Q ss_pred             ceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEc
Q psy15063        161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGW  239 (417)
Q Consensus       161 ~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GW  239 (417)
                      .+.|++|.++...... ..+.+.|.+|++||+|+.....||||||||++|+.|+++|+|||||...... .+..++++||
T Consensus       441 ~~~V~~G~~~~~~~~~-~~~~~~V~~ii~Hp~y~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~~~~~~v~GW  519 (625)
T 2f83_A          441 ILRVYSGILNQSEIKE-DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGW  519 (625)
T ss_dssp             GEEEEESCSBGGGCCS-SCCCEEEEEEEECTTCCBTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTTCCCCCEEECBC
T ss_pred             eEEEEEEeccCCCCCC-CceEEeEEEEEECCccCcCCccccEEEEEECCcccCCCceeeeEcCCccCCccCCCEEEEEEe
Confidence            7899999988765443 4466789999999999998899999999999999999999999999865543 6889999999


Q ss_pred             CccCCCCCCCCccceEEEEEEeChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCc
Q psy15063        240 GVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPR  317 (417)
Q Consensus       240 G~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~  317 (417)
                      |.+.... ..++.|+++.++++++++|+..+.. .+++.||||+... +.++|+|                         
T Consensus       520 G~~~~~~-~~s~~L~~~~v~i~~~~~C~~~~~~~~i~~~~iCag~~~~~~d~C~G-------------------------  573 (625)
T 2f83_A          520 GYRKLRD-KIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKG-------------------------  573 (625)
T ss_dssp             C-------CCCSBCBCCEECCCCHHHHHTTCTTSCCCTTBCCC----------CC-------------------------
T ss_pred             cCCCCCC-cCCcccEEEEEEEcCHHHHHHHhccCCCCCCeEEeecCCCCCcCCCC-------------------------
Confidence            9987654 5678999999999999999988765 6889999999765 7899999                         


Q ss_pred             ceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCe
Q psy15063        318 RRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPD  397 (417)
Q Consensus       318 ~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~  397 (417)
                                                                   ||||||++..+++|+|+||+||| .+|+ ..+.|+
T Consensus       574 ---------------------------------------------DSGGPLv~~~~~~~~lvGIvS~G-~~C~-~~~~P~  606 (625)
T 2f83_A          574 ---------------------------------------------DSGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPG  606 (625)
T ss_dssp             ---------------------------------------------CTTCEEEEEETTEEEEEEEEEEC-CC-----CCCC
T ss_pred             ---------------------------------------------CcccceEEEECCeEEEEEEEEeC-CCCC-CCCCCe
Confidence                                                         99999999889999999999999 8998 778999


Q ss_pred             EEEecccchhHHhhhhc
Q psy15063        398 LYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       398 vyt~Vs~~~~WI~~~~~  414 (417)
                      |||||+.|++||++++.
T Consensus       607 vyT~V~~y~~WI~~~~~  623 (625)
T 2f83_A          607 VYTNVVEYVDWILEKTQ  623 (625)
T ss_dssp             EEEEGGGGHHHHHHTC-
T ss_pred             EEEEHHHHHHHHHHHHh
Confidence            99999999999999885

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=3e-44  Score=333.38  Aligned_cols=211  Identities=26%  Similarity=0.522  Sum_probs=185.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+.    ....+.|++|.+++..... ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLI~~~~VLTA---AHC~~~~----~~~~~~v~~G~~~~~~~~~-~~~~   69 (218)
T 2z7f_E            1 IVGGRRARPH---AWPFMVSLQLRGGHFCGATLIAPNFVMSA---AHCVANV----NVRAVRVVLGAHNLSRREP-TRQV   69 (218)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---HHHHTTS----CGGGCEEEESCSBTTSCCT-TCEE
T ss_pred             CCCCEECCCC---ccCcEEEEEeCCCcEEEEEEccCCEEEEc---HHhcCCC----CcCcEEEEEeceecCCCCC-ceEE
Confidence            5688888887   499999995   36899999999999999   9999653    3467999999998876554 5688


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.|.+++.| +|+..+..||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++.+++
T Consensus        70 ~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~  147 (218)
T 2z7f_E           70 FAVQRIFEN-GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNR-GIASVLQELNVTV  147 (218)
T ss_dssp             EEEEEEEES-CCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSC-CBCSBCEEEEEEE
T ss_pred             EEEEEEEcc-CCCCCCCCCCEEEEEECCcCcCCCceeccCcCCCCCCCCCCCEEEEEEeCCCCCCC-CccchheEeeeEE
Confidence            999999999 99998899999999999999999999999999876644 78999999999988655 4688999999999


Q ss_pred             eChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        261 LSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       261 ~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      + ...|+..        |||++... +.++|+|                                               
T Consensus       148 ~-~~~C~~~--------~~Ca~~~~~~~~~C~G-----------------------------------------------  171 (218)
T 2z7f_E          148 V-TSLCRRS--------NVCTLVRGRQAGVCFG-----------------------------------------------  171 (218)
T ss_dssp             E-CTTCCTT--------SEEEECTTSCCBCCTT-----------------------------------------------
T ss_pred             e-hhHcCcc--------eeeeccCCCCCeeCCC-----------------------------------------------
Confidence            9 9999763        99999876 7899999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEE--cCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSY--GVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~--g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                             ||||||++  ++  +|+||+||  | . |+ ..+.|+|||||+.|++||+++|+
T Consensus       172 -----------------------DSGgPl~~--~~--~l~Gi~S~~~g-~-C~-~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          172 -----------------------DSGSPLVC--NG--LIHGIASFVRG-G-CA-SGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             -----------------------CTTCEEEE--TT--EEEEEEEEESS-S-TT-CSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             -----------------------cCCCceEE--cc--EEEEEEEeCCc-c-CC-CCCCCeEEEEHHHhHHHHHHHhC
Confidence                                   99999999  56  59999999  6 4 98 66789999999999999999874

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=5.2e-44  Score=333.20  Aligned_cols=215  Identities=24%  Similarity=0.392  Sum_probs=185.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.++.++   +|||+|+|.   .++|+||||+++|||||   |||+.+.    ....+.|++|.+++........+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGtLI~~~~VLTA---AHC~~~~----~~~~~~V~~G~~~~~~~~~~~~~~   70 (225)
T 1a7s_A            1 IVGGRKARPR---QFPFLASIQNQGRHFCGGALIHARFVMTA---ASCFQSQ----NPGVSTVVLGAYDLRRRERQSRQT   70 (225)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGC--------CCSEEEEESCSSTTSCCTTTCEE
T ss_pred             CCCCEECCCC---CCCcEEEEecCCCcEEEEEEeeCCEEEEc---hhccCCC----CCCceEEEEeeeECCCCCCcceeE
Confidence            5688888877   499999995   35899999999999999   9999653    346789999999887655423388


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.|.+++.| +|+.....||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++.+++
T Consensus        71 ~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~  148 (225)
T 1a7s_A           71 FSISSMSEN-GYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGG-RLSRFPRFVNVTV  148 (225)
T ss_dssp             EEEEEEECS-SCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTC-CCCSSCEEEEEEE
T ss_pred             EeEEEEecc-cccCCCCcCCEEEEEcCCcccCCCceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCC-CcccccceeeeEE
Confidence            899999999 99998899999999999999999999999999877644 78999999999987654 5688999999999


Q ss_pred             eChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        261 LSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       261 ~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      ++..+|+.        .||||+... +.++|+|                                               
T Consensus       149 ~~~~~C~~--------~~~Ca~~~~~~~~~C~G-----------------------------------------------  173 (225)
T 1a7s_A          149 TPEDQCRP--------NNVCTGVLTRRGGICNG-----------------------------------------------  173 (225)
T ss_dssp             CCGGGSCT--------TEEEEECSSSSCBCCTT-----------------------------------------------
T ss_pred             CCHHHhcc--------CceEEeccCCCCCcccC-----------------------------------------------
Confidence            99999975        799999876 7899999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                             ||||||++  ++  +|+||+|||..+|+  .. |+|||||+.|++||+++++..
T Consensus       174 -----------------------DSGgPl~~--~g--~l~Gi~S~g~~~C~--~~-p~vyt~V~~~~~WI~~~~~~~  220 (225)
T 1a7s_A          174 -----------------------DGGTPLVC--EG--LAHGVASFSLGPCG--RG-PDFFTRVALFRDWIDGVLNNP  220 (225)
T ss_dssp             -----------------------CTTCEEEE--TT--EEEEEEEEECSSTT--SS-CEEEEEGGGGHHHHHHHHHSC
T ss_pred             -----------------------CCcchhee--CC--EEEEEEEEccCCcC--CC-CcEEEEhHHhHHHHHHHhcCC
Confidence                                   99999999  45  69999999966898  44 999999999999999998643

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=9.4e-45  Score=366.38  Aligned_cols=241  Identities=23%  Similarity=0.370  Sum_probs=189.6

Q ss_pred             CCCCcccc-ccceeEecCCCCCCCCCCCCCcceeeEcc-ccceEEEeeCCeEEeeccceeeecCCCCC-CCccceEEEec
Q psy15063         91 YSCGDVSK-ERVTYFKSPHHPARPSSGLTCDYDVAIRQ-DVCAVRIEFEKVNLARKVGGVCDIDQLRD-TPVSELVLHLG  167 (417)
Q Consensus        91 ~~CG~~~~-~~~~~~~~~g~~a~~~~~~~~PW~v~i~~-~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~-~~~~~~~V~lG  167 (417)
                      ..||.... .....+|++|.+|.++   +|||+|.+.. ..|+||||+++|||||   |||+...... .....+.|++|
T Consensus       143 ~~CG~~~~~~~~~~rIvgG~~a~~~---~~Pw~v~l~~~~~CgGsLIs~~~VLTA---AHC~~~~~~~~~~~~~~~v~~G  216 (399)
T 1gpz_A          143 PVCGKPVNPVEQRQQIIGGQKAKMG---NFPWQVFTNIHGRGGGALLGDRWILTA---AHTLYPKEHEAQSNASLDVFLG  216 (399)
T ss_dssp             ECCSCCSSCCCSSCCCCSCEECCTT---SSTTEEEEESSSEEEEEEETTTEEEEC---GGGTSCTTC-----CCCEEEES
T ss_pred             CCCCCcCCcccCCCEEECCEECCCC---CCCCEEEECCCCCeEEEEeCCCEEEeC---hhcccccccccCCcceEEEEec
Confidence            46994332 1234589999999988   4999999853 4799999999999999   9999753221 13356899999


Q ss_pred             eecCCCCCCCCcEEEeeeEEEeCCCCCCC---CCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccC
Q psy15063        168 DHDLTQLNETSHVRRGVRRVLFHSHFHPF---VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTS  243 (417)
Q Consensus       168 ~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~---~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~  243 (417)
                      .+++.....  .+.+.|.+|++||+|+..   ++.||||||||++|+.|+++|+|||||...... .+..++++|||.+.
T Consensus       217 ~~~~~~~~~--~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~  294 (399)
T 1gpz_A          217 HTNVEELMK--LGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME  294 (399)
T ss_dssp             CSBHHHHHH--TCCCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECC---
T ss_pred             ccccccccc--ccccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCccccCCCCEEEEEccCCCC
Confidence            987643211  234679999999999753   568999999999999999999999999876543 68899999999886


Q ss_pred             CCCCCCCccceEEEEEEeChhhhhhhhhc-----cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCc
Q psy15063        244 FPMGEPSPTLQKLEVKVLSNARCSTVIEE-----SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPR  317 (417)
Q Consensus       244 ~~~~~~~~~L~~~~v~i~~~~~C~~~~~~-----~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~  317 (417)
                      .   ..+..|+++.+++++..+|+..+..     .+++.||||+... +.++|+|                         
T Consensus       295 ~---~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~G-------------------------  346 (399)
T 1gpz_A          295 E---KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQG-------------------------  346 (399)
T ss_dssp             -----CCSBCEEEEEEEECHHHHHC-----------CCSEEEEECGGGGGGGGCS-------------------------
T ss_pred             C---ccCccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCC-------------------------
Confidence            4   3577899999999999999987642     4788999999865 7899999                         


Q ss_pred             ceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCC
Q psy15063        318 RRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSY  395 (417)
Q Consensus       318 ~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~  395 (417)
                                                                   ||||||++..  +++|+|+||+||| .+|+  . .
T Consensus       347 ---------------------------------------------DSGGPl~~~~~~~~~~~l~GivS~g-~~C~--~-~  377 (399)
T 1gpz_A          347 ---------------------------------------------DSGGVFAVRDPNTDRWVATGIVSWG-IGCS--R-G  377 (399)
T ss_dssp             ---------------------------------------------CSSCEEEEEETTTTEEEEEEEECCC-TTTT--T-T
T ss_pred             ---------------------------------------------CCchHeEEEECCCCeEEEEEEEEeC-CCcC--C-C
Confidence                                                         9999999876  6799999999999 7998  3 4


Q ss_pred             CeEEEecccchhHHhhhhccC
Q psy15063        396 PDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       396 p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                      |+|||||+.|++||+++|...
T Consensus       378 ~~vyt~V~~y~~WI~~~~~~~  398 (399)
T 1gpz_A          378 YGFYTKVLNYVDWIKKEMEEE  398 (399)
T ss_dssp             EEEEEEGGGGHHHHHHHTC--
T ss_pred             CeEEEEhHHhHHHHHHHhccC
Confidence            899999999999999998753

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=5.4e-44  Score=333.03  Aligned_cols=217  Identities=22%  Similarity=0.317  Sum_probs=190.3

Q ss_pred             CCCCCCCCCCCCCcceeeEcc-----c-cceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        107 PHHPARPSSGLTCDYDVAIRQ-----D-VCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       107 ~g~~a~~~~~~~~PW~v~i~~-----~-~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      +|.+|.++   +|||+|+|..     + +|+||||+++|||||   |||+.+.    ....+.|++|.++.....  ..+
T Consensus         2 gG~~a~~~---~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTA---AHC~~~~----~~~~~~v~~g~~~~~~~~--~~~   69 (228)
T 3h7o_A            2 GGEKTDIK---QVPWTVAVRTYPGEESLTCGGAILSQWFVLTA---AHCVFDQ----KPETIVIQYESTNLWEDP--GKS   69 (228)
T ss_dssp             CCEECCGG---GSTTEEEEEECGGGCCEEEEEEESSSSEEEEC---HHHHTTS----CGGGCEEEESCSBTTTBC--CEE
T ss_pred             CCccCCcC---CCCeEEEEeecCCCCceEeeeEEeeCCEEEEc---HHhcccC----CCCcEEEEecccccccCC--Cce
Confidence            56667666   5999999953     4 899999999999999   9999643    457899999999876543  347


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCC-ceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTG-TIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEV  258 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~-~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v  258 (417)
                      .+.|.++++| +|+..+..||||||||++|+.|++ .++|||||...... .+..++++|||.+.... ..+..|+++.+
T Consensus        70 ~~~v~~i~~h-~y~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~  147 (228)
T 3h7o_A           70 DPYVSHVYLS-FYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMD-PKDHDLKSAQL  147 (228)
T ss_dssp             ECCEEEEEES-SCBTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCCCCTTCEEEEEECCCSSCSC-GGGGBCEEEEE
T ss_pred             eeeEEEEEcc-ccCCCCccCCEEEEEECCcccccccccccccCCccccCCCCCCeeEEEEEecCCCCC-Cccccccccee
Confidence            7889999999 999999999999999999999999 99999999876433 89999999999988665 56788999999


Q ss_pred             EEeChhhhhhhhhc-cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEE
Q psy15063        259 KVLSNARCSTVIEE-SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAI  337 (417)
Q Consensus       259 ~i~~~~~C~~~~~~-~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~  337 (417)
                      ++++.++|+..+.. .+++.||||+... .++|+|                                             
T Consensus       148 ~~~~~~~C~~~~~~~~~~~~~~Ca~~~~-~~~C~G---------------------------------------------  181 (228)
T 3h7o_A          148 TVVDLDECRTKYGPIFLSLQVFCAQKVG-VSLESG---------------------------------------------  181 (228)
T ss_dssp             EEECHHHHHHHHTTSCCCSSEEEEECTT-CCCCGG---------------------------------------------
T ss_pred             EEEcHHHHHHHhcCccCCceEEecCCCC-CcCCCC---------------------------------------------
Confidence            99999999999876 6889999999874 899999                                             


Q ss_pred             ccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        338 ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       338 ~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                               ||||||++  +++  |+||+||| .+|+  .+.|+|||||+.|++||+++|+-
T Consensus       182 -------------------------DsGgPl~~--~~~--l~Gi~S~g-~~c~--~~~p~vyt~v~~~~~WI~~~i~~  227 (228)
T 3h7o_A          182 -------------------------DAGDPTVQ--QDT--LVGVAAYF-PKRP--EGAPEVFTKVGSYVSWIQDIIKK  227 (228)
T ss_dssp             -------------------------GTTCEEEE--TTE--EEEEECCC-TTCC--TTCCEEEEEGGGTHHHHHHHHTT
T ss_pred             -------------------------CCCCccee--cCe--EEEEEeec-CcCC--CCCCcEEEEHHHHHHHHHHHhhc
Confidence                                     99999999  665  99999999 7899  48999999999999999999863

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=2.6e-43  Score=327.43  Aligned_cols=213  Identities=29%  Similarity=0.534  Sum_probs=185.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|+|.      .++|+||||+++|||||   |||+.+.    ....+.|++|.++....+. .
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTA---AHC~~~~----~~~~~~v~~G~~~~~~~~~-~   69 (221)
T 1fuj_A            1 IVGGHEAQPH---SRPYMASLQMRGNPGSHFCGGTLIHPSFVLTA---AHCLRDI----PQRLVNVVLGAHNVRTQEP-T   69 (221)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTBTTCCCEEEEEEETTEEEEC---GGGGSSS----CGGGEEEEESCSBTTSCCT-T
T ss_pred             CCCCEECCCC---CcCCEEEEEEecCCCCEEEEEEEecCCEEEEc---hHhcCcC----CCCceEEEEeeeeccCCCC-c
Confidence            5788888887   499999994      36899999999999999   9999653    3367899999998876554 6


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|.++++| +|+.....||||||||++|+.|+++++|||||...... .+..++++|||.+.... ..+..|+++.
T Consensus        70 ~~~~~v~~i~~h-~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~~~~~-~~~~~l~~~~  147 (221)
T 1fuj_A           70 QQHFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHD-PPAQVLQELN  147 (221)
T ss_dssp             CEEEEEEEEEEC-CCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSS-CBCSBCEEEE
T ss_pred             eEEEEEEEEEeC-CCCCCCCcccEEEEEeCCccccCCcceeeECCCCcCCCCCCCEEEEEEeCCCCCCC-CHHHHhhccc
Confidence            788999999999 99998899999999999999999999999999887644 78999999999987554 5678899999


Q ss_pred             EEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        258 VKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       258 v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      ++++ ...|+.        .|||++... +.++|+|                                            
T Consensus       148 ~~~~-~~~C~~--------~~~Ca~~~~~~~~~C~G--------------------------------------------  174 (221)
T 1fuj_A          148 VTVV-TFFCRP--------HNICTFVPRRKAGICFG--------------------------------------------  174 (221)
T ss_dssp             EEEE-CTTCCT--------TEEEEECSSSSCBCCTT--------------------------------------------
T ss_pred             ceEE-eeecCC--------ceeeeccCCCCCCCCCC--------------------------------------------
Confidence            9999 888975        299999876 7899999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                ||||||++  ++  +|+||+||+..+|+ ..+.|++||||+.|++||+++|+
T Consensus       175 --------------------------DSGgPL~~--~~--~l~Gi~s~~~~gC~-~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          175 --------------------------DSGGPLIC--DG--IIQGIDSFVIWGCA-TRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             --------------------------CTTCEEEE--TT--EEEEEEEECSSSTT-CSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             --------------------------CCCCeeEE--CC--EEeEEEEEeccCCC-CCCCCcEEEeHHHHHHHHHHHhC
Confidence                                      99999999  66  59999999744698 66789999999999999999874

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=1.2e-43  Score=347.69  Aligned_cols=213  Identities=21%  Similarity=0.338  Sum_probs=186.0

Q ss_pred             CCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEe
Q psy15063        108 HHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRG  183 (417)
Q Consensus       108 g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~  183 (417)
                      |..+.++   +|||+|+|..    ++|+||||+++|||||   |||+.+.      ..+.|++|.++...    ..+.+.
T Consensus        97 G~~a~~~---~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTA---AHC~~~~------~~~~V~~G~~~~~~----~~~~~~  160 (317)
T 3h5c_B           97 KRAPDLQ---DLPWQVKLTNSEGKDFCGGVIIRENFVLTT---AKCSLLH------RNITVKTYFNRTSQ----DPLMIK  160 (317)
T ss_dssp             CSSCCTT---CCTTEEEEECSSSCEEEEEEEEETTEEEEC---HHHHHSC------SSCEEEECTTSCTT----SCEEEE
T ss_pred             cccCccC---CCCcEEEEeccCCceeeeeEEeeCCEEEEC---hHhcCcC------CceEEEEeeecCCC----CcEEEE
Confidence            6777777   5999999953    5899999999999999   9999642      57899999876643    568899


Q ss_pred             eeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCC----ccCCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE----SFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       184 V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~----~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      |+++++||+|+..+..||||||||++|+.|+++|+|||||....    ...+..++++|||..  . ...+..|+++.++
T Consensus       161 v~~i~~Hp~y~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~--~-~~~~~~L~~~~v~  237 (317)
T 3h5c_B          161 ITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARN--G-TDLGNSLTTRPVT  237 (317)
T ss_dssp             EEEEEECTTCBTTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCTT--C-CSSSCCCBCCEEE
T ss_pred             eeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCCC--C-CCCCccceEEEEE
Confidence            99999999999999999999999999999999999999998752    127899999999982  2 2578899999999


Q ss_pred             EeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        260 VLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       260 i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      +++.++|+..+...+++.||||+...  +.|.|                                               
T Consensus       238 ~~~~~~C~~~~~~~~~~~~~Ca~~~~--~~~~g-----------------------------------------------  268 (317)
T 3h5c_B          238 LVEGEECGQVLNVTVTTRTYCERSSV--AAMHW-----------------------------------------------  268 (317)
T ss_dssp             EECHHHHHHHHTCCCCTTEEEEECSC--CCCCC-----------------------------------------------
T ss_pred             EECHHHHhhhhcCcCCCceeECCCCC--CCcCC-----------------------------------------------
Confidence            99999999998878999999998654  46788                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                             ||||||++..+++|+|+||+||+ . |. ..+.|+|||||+.|++||+++|+
T Consensus       269 -----------------------DsGgPl~~~~~~~~~l~Gi~S~g-~-~~-~~~~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          269 -----------------------MDGSVVTREHRGSWFLTGVLGSQ-P-VG-GQAHMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             -----------------------CTTCEEEEEETTEEEEEEEECCC-C-SS-CCTTEEEEEEGGGCHHHHHHHHC
T ss_pred             -----------------------CCCCCEEEecCCEEEEEEEEEEC-C-CC-CCCcceEEEEhHHhHHHHHHHhC
Confidence                                   99999999989999999999998 4 55 47899999999999999999874

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=7e-44  Score=374.81  Aligned_cols=239  Identities=25%  Similarity=0.350  Sum_probs=156.5

Q ss_pred             CCCCccccc-cceeEecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEe
Q psy15063         91 YSCGDVSKE-RVTYFKSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHL  166 (417)
Q Consensus        91 ~~CG~~~~~-~~~~~~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~l  166 (417)
                      ..||..... ....+|++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+.    ....+.|++
T Consensus       307 ~~CG~~~~~~~~~~rIvgG~~a~~g---~~Pw~v~l~~~~~~~CGGsLIs~~~VLTA---AHCv~~~----~~~~~~V~~  376 (565)
T 2xrc_A          307 LSCGVKNRMHIRRKRIVGGKRAQLG---DLPWQVAIKDASGITCGGIYIGGCWILTA---AHCLRAS----KTHRYQIWT  376 (565)
T ss_dssp             CCCCC-----------------------CCTTBCEEEESSSCCCCCEEEETTEEEEC---HHHHTTC----SSCCEEEEC
T ss_pred             cccCCCCCcccCCCceECCEECCCC---CCCcEEEEecCCceeeeEEEEeCCEEEEC---hhhcccC----CCcceEEEE
Confidence            479944332 235689999999988   499999995   46999999999999999   9999653    346789999


Q ss_pred             ceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCC----ceeeeeCCCCCCcc-CCCeEEEEEcCc
Q psy15063        167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTG----TIQPVCLPQKGESF-IGKRGHVVGWGV  241 (417)
Q Consensus       167 G~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~----~v~PicLp~~~~~~-~~~~~~v~GWG~  241 (417)
                      |.+++........+.+.|.+|++||+|+..++.||||||||++|+.|++    .++|||||.....+ .+..++|+|||.
T Consensus       377 G~~~~~~~~~~~~~~~~V~~ii~Hp~Y~~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~  456 (565)
T 2xrc_A          377 TVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGR  456 (565)
T ss_dssp             -------------CEEEEEEEEECTTCCTTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTTSSCTTCEEEEEC---
T ss_pred             EEeeccCCCCCccEEEEEEEEEeCCCCCCCcccccceeeeeccccccccccccceeeeecCCcccccCCCCEEEEEeCcc
Confidence            9988765442245778899999999999999999999999999999874    68999999876544 789999999999


Q ss_pred             cCCCCCCCCccceEEEEEEeChhhhhhhhhccCC-CCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcce
Q psy15063        242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG-IGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRR  319 (417)
Q Consensus       242 ~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~-~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~  319 (417)
                      +..+.  .+..|+++.+++++.  |+..+...+. ..||||+... +.++|+|                           
T Consensus       457 t~~~~--~~~~L~~~~v~i~~~--C~~~~~~~~~~~~~iCAg~~~g~~d~C~G---------------------------  505 (565)
T 2xrc_A          457 EKDNE--RVFSLQWGEVKLISN--CSKFYGNRFYEKEMECAGTYDGSIDACKG---------------------------  505 (565)
T ss_dssp             ------------CEEEEEECSC--THHHHTTSCCTTTEEEEEEC------------------------------------
T ss_pred             CCCCC--ccceeeEEeeeehHH--hHHhhccCcCCCceEEeCCCCCCCccCCC---------------------------
Confidence            87643  678899999999984  9988876444 4599999876 5799999                           


Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcCCCccccCCCCeE
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGVTGCAIMPSYPDL  398 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~~~C~~~~~~p~v  398 (417)
                                                                 ||||||++.. +++|+|+||+||| .+|+ .++.|+|
T Consensus       506 -------------------------------------------DSGGPLv~~~~~~~~~lvGIvS~G-~~C~-~~~~PgV  540 (565)
T 2xrc_A          506 -------------------------------------------DSGGPLVCMDANNVTYVWGVVSWG-ENCG-KPEFPGV  540 (565)
T ss_dssp             --------------------------------------------CCCEEEEECTTCCEEEEEEECC--------CCCCEE
T ss_pred             -------------------------------------------ccccceEEEeCCCcEEEEEEEeeC-CCCC-CCCCCEE
Confidence                                                       9999999976 7899999999999 8999 7789999


Q ss_pred             EEecccchhHHhhhhcc
Q psy15063        399 YTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       399 yt~Vs~~~~WI~~~~~~  415 (417)
                      ||||+.|++||+++|+.
T Consensus       541 YTrVs~y~~WI~~~i~~  557 (565)
T 2xrc_A          541 YTKVANYFDWISYHVGR  557 (565)
T ss_dssp             EEEGGGGHHHHHHHC--
T ss_pred             EEEHHHHHHHHHHHhcc
Confidence            99999999999999864

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=9.5e-42  Score=368.68  Aligned_cols=234  Identities=26%  Similarity=0.429  Sum_probs=200.5

Q ss_pred             CCCCccccccc--eeEecCCCCCCCCCCCCCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEE
Q psy15063         91 YSCGDVSKERV--TYFKSPHHPARPSSGLTCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVL  164 (417)
Q Consensus        91 ~~CG~~~~~~~--~~~~~~g~~a~~~~~~~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V  164 (417)
                      +.||.......  ..+|++|.+|.++.   |||+|+|.    .++|+||||+++|||||   |||+....   .+..+.|
T Consensus       546 ~~CG~~~~~~~~~~~RIvGG~~a~~~~---~PW~VsL~~~~~~~~CGGSLIs~~wVLTA---AHCv~~~~---~~~~~~V  616 (791)
T 4dur_A          546 FDCGKPQVEPKKCPGRVVGGCVAHPHS---WPWQVSLRTRFGMHFCGGTLISPEWVLTA---AHCLEKSP---RPSSYKV  616 (791)
T ss_dssp             CCTTCCSSCCCCCCTTCTTCEECCTTS---STTEEEEECTTSCEEEEEEEEETTEEEEC---GGGGSSCC---CGGGCEE
T ss_pred             cCcCCcccccccCCCceECCEECCCCC---CCeEEEEEecCCCeEEEEEEEeCCEEEEC---HHHcCCcC---CCceEEE
Confidence            57884433322  35899999999984   99999994    35899999999999999   99996432   3467899


Q ss_pred             EeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccC
Q psy15063        165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTS  243 (417)
Q Consensus       165 ~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~  243 (417)
                      ++|.++...... ..+.+.|.++++||.      .||||||||++|+.|+++|+|||||...... .+..++|+|||.+.
T Consensus       617 ~lG~~~~~~~~~-~~q~~~V~~i~~hp~------~nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~  689 (791)
T 4dur_A          617 ILGAHQEVNLEP-HVQEIEVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ  689 (791)
T ss_dssp             EESCCBSSSCCT-TCEEEEEEEEEECTT------CCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC-
T ss_pred             EeccccccCCCC-ccEEEEEEEEECCCC------CCceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCC
Confidence            999998776555 678899999999997      4799999999999999999999999876554 78999999999987


Q ss_pred             CCCCCCCccceEEEEEEeChhhhhhhh--hccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCccee
Q psy15063        244 FPMGEPSPTLQKLEVKVLSNARCSTVI--EESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRI  320 (417)
Q Consensus       244 ~~~~~~~~~L~~~~v~i~~~~~C~~~~--~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~  320 (417)
                      ..  ..+..|+++.++++++..|+...  ...+.+.||||+... +.++|+|                            
T Consensus       690 ~~--~~s~~L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCAg~~~gg~daC~G----------------------------  739 (791)
T 4dur_A          690 GT--FGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG----------------------------  739 (791)
T ss_dssp             ----CCTTBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCS----------------------------
T ss_pred             CC--CCCCeeEEEEEEEeCHHHhhcccccCCCCCCCeEEeccCCCCCCCCCC----------------------------
Confidence            43  36789999999999999998752  237899999999766 7899999                            


Q ss_pred             ecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEE
Q psy15063        321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYT  400 (417)
Q Consensus       321 ~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt  400 (417)
                                                                ||||||++..+++|+|+||+||| .+|+ ..+.|+|||
T Consensus       740 ------------------------------------------DSGGPLv~~~~~~~~LvGIvS~G-~gC~-~~~~PgVYT  775 (791)
T 4dur_A          740 ------------------------------------------DSGGPLVCFEKDKYILQGVTSWG-LGCA-RPNKPGVYV  775 (791)
T ss_dssp             ------------------------------------------CTTCEEEEEETTEEEEEEECCTT-TCCB-BTTBCEEEE
T ss_pred             ------------------------------------------CcccceEEEeCCeEEEEEEEEeC-CCCC-CCCCCeEEE
Confidence                                                      99999999989999999999999 8999 788999999


Q ss_pred             ecccchhHHhhhhc
Q psy15063        401 RVSEYIRWIHVNAI  414 (417)
Q Consensus       401 ~Vs~~~~WI~~~~~  414 (417)
                      ||+.|++||+++|.
T Consensus       776 rVs~y~dWI~~~i~  789 (791)
T 4dur_A          776 RVSRFVTWIEGVMR  789 (791)
T ss_dssp             EGGGTHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHH
Confidence            99999999999886

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=100.00  E-value=3.5e-40  Score=342.72  Aligned_cols=224  Identities=20%  Similarity=0.297  Sum_probs=175.0

Q ss_pred             cCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        106 SPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       106 ~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      ++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+.   .....+.|++|.++..     ..+.+
T Consensus       225 ~~g~~a~~~---~~Pw~v~l~~~~~~~CgGsLIs~~~VLTA---AHC~~~~---~~~~~~~V~~G~~~~~-----~~~~~  290 (509)
T 2odp_A          225 MSANASDQE---RTPWHVTIKPKSQETCRGALISDQWVLTA---AHCFRDG---NDHSLWRVNVGDPKSQ-----WGKEF  290 (509)
T ss_dssp             CCTTSCHHH---HCTTEEEEEC----CEEEEECSSSEEEEC---GGGC-----------CEEEECCTTCT-----TCEEE
T ss_pred             CCCCccccC---CCCcEEEEEeCCCcEEEEEEEcCCEEEEc---HHHcCCC---CCcceEEEEeCCcccC-----CCcee
Confidence            457777666   599999995   46999999999999999   9999652   1236789999998742     45788


Q ss_pred             eeeEEEeCCCCCCC---------CCCCCeEEEEecCCcCCCCceeeeeCCCCCC------ccCCCeEEEEEcCccCCCCC
Q psy15063        183 GVRRVLFHSHFHPF---------VLSNDIALLQLDRPVPLTGTIQPVCLPQKGE------SFIGKRGHVVGWGVTSFPMG  247 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~---------~~~nDIALLkL~~pv~~s~~v~PicLp~~~~------~~~~~~~~v~GWG~~~~~~~  247 (417)
                      .|+++++||+|+..         ++.||||||||++|+.|+++|+|||||....      ...+..|++.|||.+.... 
T Consensus       291 ~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~~~~-  369 (509)
T 2odp_A          291 LIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQS-  369 (509)
T ss_dssp             CEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSE-
T ss_pred             eeEEEEECCCCccccccccccccccCCCeEEEEECCcccCCCCcccccCCCCcccchhhccCCCCcccccccccccccc-
Confidence            99999999999874         5789999999999999999999999997532      1268888999999765422 


Q ss_pred             CCC-----ccceEEEEEEe---Chhhhhhh-------hh------ccCCCCeEEecCCCCCCCccCCCCCcccccccccc
Q psy15063        248 EPS-----PTLQKLEVKVL---SNARCSTV-------IE------ESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQ  306 (417)
Q Consensus       248 ~~~-----~~L~~~~v~i~---~~~~C~~~-------~~------~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~  306 (417)
                       .+     ...+++++.++   ++.+|+..       |.      ..+++.||||+...+.++|+|              
T Consensus       370 -~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~C~G--------------  434 (509)
T 2odp_A          370 -VPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKG--------------  434 (509)
T ss_dssp             -EEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECCTTCCCCCGG--------------
T ss_pred             -ceeeeecccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCCCCCCcccCC--------------
Confidence             11     12256677775   58999985       32      257899999997668899999              


Q ss_pred             cccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC
Q psy15063        307 FHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV  386 (417)
Q Consensus       307 wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~  386 (417)
                                                                              ||||||++..+++|+|+||+|||.
T Consensus       435 --------------------------------------------------------DSGGPL~~~~~~~~~l~GIvS~G~  458 (509)
T 2odp_A          435 --------------------------------------------------------ESGGAVFLERRFRFFQVGLVSWGL  458 (509)
T ss_dssp             --------------------------------------------------------GTTCEEEEEETTEEEEEEEEEEES
T ss_pred             --------------------------------------------------------CccCceEEEECCeEEEEEEEEEcC
Confidence                                                                    999999999899999999999994


Q ss_pred             -CCccc--------cCCCC------eEEEecccchhHHhhhhcc
Q psy15063        387 -TGCAI--------MPSYP------DLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       387 -~~C~~--------~~~~p------~vyt~Vs~~~~WI~~~~~~  415 (417)
                       .+|+.        .+..|      +|||||+.|++||+++++.
T Consensus       459 ~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~~  502 (509)
T 2odp_A          459 YNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGD  502 (509)
T ss_dssp             CCTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHTT
T ss_pred             CCCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhCC
Confidence             27961        13445      5999999999999999864

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=100.00  E-value=6.5e-40  Score=339.47  Aligned_cols=213  Identities=19%  Similarity=0.333  Sum_probs=172.7

Q ss_pred             CCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeC
Q psy15063        118 TCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFH  190 (417)
Q Consensus       118 ~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iH  190 (417)
                      +|||+|+|.       .++|+||||+++|||||   |||+....   ....+.|++|.+         .+.+.|.++++|
T Consensus       225 ~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTA---AHC~~~~~---~~~~~~v~~G~~---------~~~~~v~~i~~H  289 (497)
T 1rrk_A          225 KQPWQAKISVIRPSKGHESCMGAVVSEYFVLTA---AHCFTVDD---KEHSIKVSVGGE---------KRDLEIEVVLFH  289 (497)
T ss_dssp             HSTTEEEEEECC--CCCEEEEEEECSSSEEEEC---GGGCCTTC---CGGGEEEEETTC---------SSCEEEEEEEEC
T ss_pred             ccCcEEEEEEEcCCCCCceeEEEEecCCEEEEC---HHhCCCCC---CceEEEEEeCCc---------cceeeeEEEEeC
Confidence            699999994       35899999999999999   99996431   346789999964         246789999999


Q ss_pred             CCCCCC---------CCCCCeEEEEecCCcCCCCceeeeeCCCCCC-----cc-CCCeEEEEEcCccCCCC------CCC
Q psy15063        191 SHFHPF---------VLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-----SF-IGKRGHVVGWGVTSFPM------GEP  249 (417)
Q Consensus       191 P~Y~~~---------~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-----~~-~~~~~~v~GWG~~~~~~------~~~  249 (417)
                      |+|+..         +..||||||||++|+.|+++|+|||||....     .. .+..|++.|||.+....      ...
T Consensus       290 p~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~  369 (497)
T 1rrk_A          290 PNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEE  369 (497)
T ss_dssp             TTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEES
T ss_pred             CCccccccccccccccCCCcEEEEEECCCCcCCCCeeeeeCCCCCccccccccCCCCchhcccccccCCccccceeeccC
Confidence            999864         5789999999999999999999999997532     12 67888999999764321      024


Q ss_pred             CccceEEEEEEeC---hhhhhhhh------h------ccCCCCeEEecCCC---CCCCccCCCCCcccccccccccccCc
Q psy15063        250 SPTLQKLEVKVLS---NARCSTVI------E------ESIGIGMLCAAPDE---TQGTCFVPVSPVGYTKKHLQQFHQGT  311 (417)
Q Consensus       250 ~~~L~~~~v~i~~---~~~C~~~~------~------~~~~~~~iCa~~~~---~~~~C~g~~~p~~~t~~~~~~wi~~~  311 (417)
                      +..|+++.+++++   ..+|+..+      .      ..+++.||||+...   ++++|+|                   
T Consensus       370 ~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C~G-------------------  430 (497)
T 1rrk_A          370 EKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRG-------------------  430 (497)
T ss_dssp             SSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGG-------------------
T ss_pred             CCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCCCCcCCCC-------------------
Confidence            6789999999998   78998742      1      24789999999764   4789999                   


Q ss_pred             cccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCC-Ccc
Q psy15063        312 TYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVT-GCA  390 (417)
Q Consensus       312 ~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~-~C~  390 (417)
                                                                         ||||||++..+++|+|+||+|||.. +|+
T Consensus       431 ---------------------------------------------------DSGGPL~~~~~~~~~l~GIvS~g~~~~C~  459 (497)
T 1rrk_A          431 ---------------------------------------------------DSGGPLIVHKRSRFIQVGVISWGVVDVCK  459 (497)
T ss_dssp             ---------------------------------------------------GTTCEEEEEETTEEEEEEEEEEESCCCC-
T ss_pred             ---------------------------------------------------CCCCeeEEEeCCEEEEEEEEEecCCCCCC
Confidence                                                               9999999998999999999999942 797


Q ss_pred             cc----CCCCe----EEEecccchhHHhhhhccC
Q psy15063        391 IM----PSYPD----LYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       391 ~~----~~~p~----vyt~Vs~~~~WI~~~~~~~  416 (417)
                       .    .+.|+    |||||+.|++||++++...
T Consensus       460 -~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~~~  492 (497)
T 1rrk_A          460 -NQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  492 (497)
T ss_dssp             --------CCTTCEEEEEEGGGGHHHHHHHTTTS
T ss_pred             -CccccCCCCCccceeeeeHHHHHHHHHHHhCcc
Confidence             3    34674    9999999999999998643

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=100.00  E-value=1.2e-37  Score=337.51  Aligned_cols=221  Identities=19%  Similarity=0.300  Sum_probs=175.2

Q ss_pred             cCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        106 SPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       106 ~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      ..+.++.++   +|||++.+.       .++|+||||+++|||||   |||+...   .....+.|++|.++        
T Consensus       458 ~~~~~~~~~---~~Pw~~~v~~~~~~~~~~~CgGsLIs~~~VLTA---AHC~~~~---~~~~~~~V~~G~~~--------  520 (741)
T 3hrz_D          458 EHRKGTDYH---KQPWQAKISVIRPSKGHESCMGAVVSEYFVLTA---AHCFTVD---DKEHSIKVSVGGEK--------  520 (741)
T ss_dssp             CC---CCTT---TCTTEEEEEECCCC-----EEEEECSSSEEEEC---GGGCC--------CCEEEEETTCS--------
T ss_pred             ccCCccccc---CcCCeEEEEEEeCCCCCCEEEEEEecCCEEEEc---hhhcccc---CCcceEEEEeCCCc--------
Confidence            346677676   599977663       35899999999999999   9999643   13467899999643        


Q ss_pred             cEEEeeeEEEeCCCCCCCC---------CCCCeEEEEecCCcCCCCceeeeeCCCCCC-----cc-CCCeEEEEEcCccC
Q psy15063        179 HVRRGVRRVLFHSHFHPFV---------LSNDIALLQLDRPVPLTGTIQPVCLPQKGE-----SF-IGKRGHVVGWGVTS  243 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~---------~~nDIALLkL~~pv~~s~~v~PicLp~~~~-----~~-~~~~~~v~GWG~~~  243 (417)
                       +.+.|.++++||+|+..+         +.||||||||++|+.|+++|+|||||....     .. .+..|+++|||.+.
T Consensus       521 -~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~  599 (741)
T 3hrz_D          521 -RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLP  599 (741)
T ss_dssp             -CCEEEEEEEECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSC
T ss_pred             -eEEEEEEEEECCCCCcccccccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhccCCCCccccccccccc
Confidence             567799999999998653         689999999999999999999999996432     12 68899999999876


Q ss_pred             CCCC------CCCccceEEEEEEeC---hhhhhhhhh------------ccCCCCeEEecCCC---CCCCccCCCCCccc
Q psy15063        244 FPMG------EPSPTLQKLEVKVLS---NARCSTVIE------------ESIGIGMLCAAPDE---TQGTCFVPVSPVGY  299 (417)
Q Consensus       244 ~~~~------~~~~~L~~~~v~i~~---~~~C~~~~~------------~~~~~~~iCa~~~~---~~~~C~g~~~p~~~  299 (417)
                      ....      ..+..|+++.+++++   +..|...+.            ..+++.||||+...   +.++|+|       
T Consensus       600 ~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~G-------  672 (741)
T 3hrz_D          600 AQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRG-------  672 (741)
T ss_dssp             SSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGG-------
T ss_pred             cccccceeccccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcCcC-------
Confidence            5321      136789999999998   899998432            25899999999875   6789999       


Q ss_pred             ccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEE
Q psy15063        300 TKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA  379 (417)
Q Consensus       300 t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~  379 (417)
                                                                                     ||||||++..+++|+|+
T Consensus       673 ---------------------------------------------------------------DSGGPL~~~~~~~~~lv  689 (741)
T 3hrz_D          673 ---------------------------------------------------------------DSGGPLIVHKRSRFIQV  689 (741)
T ss_dssp             ---------------------------------------------------------------GTTCEEEEEETTEEEEE
T ss_pred             ---------------------------------------------------------------cccCceEEeeCCeEEEE
Confidence                                                                           99999999999999999


Q ss_pred             eEEEEcC-CCcccc---CCCC-----eEEEecccchhHHhhhhcc
Q psy15063        380 GIVSYGV-TGCAIM---PSYP-----DLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       380 GI~S~g~-~~C~~~---~~~p-----~vyt~Vs~~~~WI~~~~~~  415 (417)
                      ||+|||. .+|+ .   .+.|     +|||||+.|++||+++|+-
T Consensus       690 GIvS~G~~~~C~-~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~~  733 (741)
T 3hrz_D          690 GVISWGVVDVCK-NQKRQKQVPAHARDFHINLFQVLPWLKEKLQD  733 (741)
T ss_dssp             EEEEEESSCCCC-------CCCTTCEEEEEEGGGSHHHHHHHTTT
T ss_pred             EEEeecCCcccC-CcccccCCCCCccceEEEhHHhHHHHHHHhcC
Confidence            9999994 3999 5   5788     9999999999999999864

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=100.00  E-value=1.4e-36  Score=280.88  Aligned_cols=194  Identities=12%  Similarity=0.106  Sum_probs=156.3

Q ss_pred             CCcc--eeeE--ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCC
Q psy15063        118 TCDY--DVAI--RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHF  193 (417)
Q Consensus       118 ~~PW--~v~i--~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y  193 (417)
                      ++||  .+.+  ..++|+||||+++|||||   |||+.+.....-...+.|++|.+++...    .+.+.|.++++||+|
T Consensus        16 ~~P~~~~~~~~~~~~~CgGtLIs~~~VLTA---AHCv~~~~~~~~~~~~~v~~G~~~~~~~----~~~~~v~~i~~hp~y   88 (215)
T 1p3c_A           16 VAPYNSIAYITFGGSSCTGTLIAPNKILTN---GHCVYNTASRSYSAKGSVYPGMNDSTAV----NGSANMTEFYVPSGY   88 (215)
T ss_dssp             STTGGGEEEEECSSCEEEEEEEETTEEEEC---HHHHEETTTTEECCCCEEEETCBTTBCT----TCCEEEEEEECCHHH
T ss_pred             cCCCeEEEEEEcCCceEEEEEEeCCEEEEC---ccEeccCCCCccccceEEEEcccCCCCC----CCeEEEEEEEeCCcc
Confidence            4577  3344  456999999999999999   9999653211111334999999987643    236789999999999


Q ss_pred             C-CCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhc
Q psy15063        194 H-PFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE  272 (417)
Q Consensus       194 ~-~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~  272 (417)
                      + .....||||||||++|  |+++++|||||..... .+..++++|||.+...  ..+..|+++.+++++...|...+. 
T Consensus        89 ~~~~~~~~DiAll~L~~~--~~~~v~pi~l~~~~~~-~g~~~~~~Gwg~~~~~--~~~~~l~~~~~~~~~~~~c~~~~~-  162 (215)
T 1p3c_A           89 INTGASQYDFAVIKTDTN--IGNTVGYRSIRQVTNL-TGTTIKISGYPGDKMR--STGKVSQWEMSGSVTREDTNLAYY-  162 (215)
T ss_dssp             HHHCCGGGCCEEEEESSC--HHHHHCCCCBCCCSCC-TTCEEEEEECCHHHHH--HHSSCCCEEEEEECCEECSSEEEE-
T ss_pred             ccCCCcccCEEEEEECCC--CcccceeeecCCCccc-CCCeEEEecCCCCCcc--cccceechhccCccCcccchheee-
Confidence            4 5677899999999996  6789999999987643 7999999999976542  246789999999999999986441 


Q ss_pred             cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecC
Q psy15063        273 SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNE  352 (417)
Q Consensus       273 ~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~  352 (417)
                                   +.++|+|                                                            
T Consensus       163 -------------~~~~C~G------------------------------------------------------------  169 (215)
T 1p3c_A          163 -------------TIDTFSG------------------------------------------------------------  169 (215)
T ss_dssp             -------------CCCCCTT------------------------------------------------------------
T ss_pred             -------------ccccCCC------------------------------------------------------------
Confidence                         5689999                                                            


Q ss_pred             ceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        353 HFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       353 ~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                ||||||++. ++  +|+||+||| .+|+   ..|++||||+.|++||+++++
T Consensus       170 ----------DSGgPl~~~-~g--~lvGi~S~g-~~c~---~~p~v~t~v~~~~~WI~~~~~  214 (215)
T 1p3c_A          170 ----------NSGSAMLDQ-NQ--QIVGVHNAG-YSNG---TINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             ----------CTTCEEECT-TS--CEEEECCEE-EGGG---TEEEEEBCCHHHHHHHHHHHT
T ss_pred             ----------CCCCeeEcc-CC--eEEEEEecc-cCCC---ccCceeEechHHHHHHHHHhc
Confidence                      999999985 44  599999999 7787   679999999999999999874

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=100.00  E-value=1.8e-32  Score=240.30  Aligned_cols=147  Identities=28%  Similarity=0.514  Sum_probs=130.0

Q ss_pred             CCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCC--CCCccceEEEEEEeChhhhhhhh
Q psy15063        193 FHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMG--EPSPTLQKLEVKVLSNARCSTVI  270 (417)
Q Consensus       193 Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~--~~~~~L~~~~v~i~~~~~C~~~~  270 (417)
                      ++..++.||||||||++|+.|+++|+|||||..... .+..++++|||.+.....  ..+..|+++.++++++++|+..+
T Consensus         1 ~d~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~-~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~   79 (152)
T 2pka_B            1 ADGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPE-LGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAH   79 (152)
T ss_dssp             CCCSBCTTCCEEEEESSCCCCCSSCCCCCCCSSCCC-TTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHC
T ss_pred             CCCCCCCCCEEEEEECCCCcCCCCEEeEECCCCCCC-CCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhh
Confidence            456678899999999999999999999999987654 789999999999876442  36789999999999999999988


Q ss_pred             hccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEE
Q psy15063        271 EESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGAL  349 (417)
Q Consensus       271 ~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsl  349 (417)
                      ...+++.||||+... +.++|+|                                                         
T Consensus        80 ~~~~~~~~iCa~~~~~~~~~C~G---------------------------------------------------------  102 (152)
T 2pka_B           80 PDKVTESMLCAGYLPGGKDTCMG---------------------------------------------------------  102 (152)
T ss_dssp             SSBCCTTEEEEECTTSSCBCCTT---------------------------------------------------------
T ss_pred             cCCCCCCEEeeccCCCCCcccCC---------------------------------------------------------
Confidence            767899999999754 7899999                                                         


Q ss_pred             ecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        350 LNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       350 i~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                   ||||||++  +++  |+||+|||..+|+ ..+.|+|||||+.|++||++++..
T Consensus       103 -------------DsGgPL~~--~g~--l~Gi~S~g~~~C~-~~~~p~vyt~V~~y~~WI~~~~~~  150 (152)
T 2pka_B          103 -------------DSGGPLIC--NGM--WQGITSWGHTPCG-SANKPSIYTKLIFYLDWIDDTITE  150 (152)
T ss_dssp             -------------CTTCEEEE--TTE--EEEEECCCCSSTT-CTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             -------------ccccceEE--CCE--EEEEEecCCCCCC-CCCCCeEEEEHHHHHHHHHHHhcc
Confidence                         99999999  565  9999999966898 678999999999999999998864

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.97  E-value=3.4e-30  Score=220.13  Aligned_cols=125  Identities=23%  Similarity=0.474  Sum_probs=110.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc----ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ----DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~----~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      |++|.+|.++   +|||+|++..    ++|+||||+++|||||   |||+.+       ..+.|++|.+++..... ..+
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTA---AHC~~~-------~~~~v~~G~~~~~~~~~-~~~   66 (131)
T 1yph_C            1 IVNGEEAVPG---SWPWQVSLQDKTGFHFCGGSLINENWVVTA---AHCGVT-------TSDVVVAGEFDQGSSSE-KIQ   66 (131)
T ss_dssp             CBTCEECCTT---SSTTEEEEECTTSCEEEEEEEEETTEEEEC---GGGCCC-------TTSEEEESCSBTTCSSS-CCE
T ss_pred             CCCCEECCCC---CcCcEEEEEeCCCCEEEEEEEeeCCEEEEC---HHHCCC-------CCeEEEEeEccCCCCCC-ceE
Confidence            5788889888   4999999954    5899999999999999   999864       45789999998865544 568


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccC
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTS  243 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~  243 (417)
                      .+.|.++++||+|+..+..||||||||++|+.|+++++|||||.....+ .+..|+++|||.+.
T Consensus        67 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t~  130 (131)
T 1yph_C           67 KLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTR  130 (131)
T ss_dssp             EEEEEEEEECTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSC
T ss_pred             EEEEEEEEeCCCCCCCCCCCCEEEEEECCcccCCCcCcceECCCcccCCCCCCEEEEEcCCccC
Confidence            8999999999999999999999999999999999999999999876544 78999999999874

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.95  E-value=4e-29  Score=231.95  Aligned_cols=173  Identities=14%  Similarity=0.106  Sum_probs=131.1

Q ss_pred             CCcceeeEcc------ccceEEEee---CCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEE
Q psy15063        118 TCDYDVAIRQ------DVCAVRIEF---EKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVL  188 (417)
Q Consensus       118 ~~PW~v~i~~------~~C~GtLIs---~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~  188 (417)
                      +|||+++|..      ++|+||||+   ++|||||   |||+.+.........+.|++|.++...    ..+.+.|++++
T Consensus         5 ~~p~~g~l~~~~~~~~~~CgGslI~s~s~~~VLTA---AHC~~~~~~~~~~~~~~v~~G~~~~~~----~~~~~~v~~~~   77 (218)
T 3cp7_A            5 DSPHIGKVFFSTNQGDFVCSANIVASANQSTVATA---GHCLHDGNGGQFARNFVFAPAYDYGES----EHGVWAAEELV   77 (218)
T ss_dssp             TCTTEEEEEEEETTEEEEEEEEEBCCTTSCEEEEC---GGGTBCCTTCBBCEEEEEEETCSSSCC----TTCCEEEEEEE
T ss_pred             CCceEEEEEEEcCCCCeEEEEEEEecCCCCEEEEC---hHhcCcCCCCeeecCEEEECcccCCCC----CccEEEEEEEE
Confidence            6999999953      589999999   9999999   999965321112356889999876532    23457799999


Q ss_pred             eCCCCCC-CCCCCCeEEEEecCC--cCCCCcee-eeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChh
Q psy15063        189 FHSHFHP-FVLSNDIALLQLDRP--VPLTGTIQ-PVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNA  264 (417)
Q Consensus       189 iHP~Y~~-~~~~nDIALLkL~~p--v~~s~~v~-PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~  264 (417)
                      +||+|+. ....||||||||++|  +.|++.++ |++|+... . .+..++++|||.+....   ...|          .
T Consensus        78 ~hp~y~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~-~-~g~~~~v~GwG~~~~~~---~~~l----------~  142 (218)
T 3cp7_A           78 TSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQ-P-RGQYYSAYGYPAAAPFN---GQEL----------H  142 (218)
T ss_dssp             ECHHHHHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSC-C-SSCEEEEEECCCSTTCC---SSSC----------E
T ss_pred             ECcccccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeecC-C-CCCEEEEEeCCCCCCCC---Ccee----------e
Confidence            9999974 467899999999999  88999999 99998643 2 68899999999875322   1223          3


Q ss_pred             hhhhh-hhc---cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccC
Q psy15063        265 RCSTV-IEE---SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALD  340 (417)
Q Consensus       265 ~C~~~-~~~---~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~  340 (417)
                      .|... +..   .....|+|+.       |.|                                                
T Consensus       143 ~C~~~~~~~~~~~~~~~~~Ca~-------~~G------------------------------------------------  167 (218)
T 3cp7_A          143 SCHGTATNDPMGSSTQGIPCNM-------TGG------------------------------------------------  167 (218)
T ss_dssp             EEEEECEECTTSSSCEEEECCC-------CTT------------------------------------------------
T ss_pred             EeeeeEEcCCCCCceEEecCCC-------CCC------------------------------------------------
Confidence            45432 111   1333799982       568                                                


Q ss_pred             CeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCcc
Q psy15063        341 GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCA  390 (417)
Q Consensus       341 ~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~  390 (417)
                                            ||||||++..+++++|+||+||| .+|+
T Consensus       168 ----------------------DSGGPlv~~~~g~~~lvGIvS~G-~gc~  194 (218)
T 3cp7_A          168 ----------------------SSGGPWFLGNGTGGAQNSTNSYG-YTFL  194 (218)
T ss_dssp             ----------------------CTTCEEEESSSSSSCEEEECCEE-ETTE
T ss_pred             ----------------------CcCCeeEEccCCCeEEEEEEccc-cCCC
Confidence                                  99999999766667899999999 8898

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.92  E-value=4.5e-25  Score=210.99  Aligned_cols=186  Identities=10%  Similarity=0.020  Sum_probs=135.2

Q ss_pred             CCccee--eEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEe
Q psy15063        118 TCDYDV--AIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLF  189 (417)
Q Consensus       118 ~~PW~v--~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~i  189 (417)
                      .|||++  .+.      .++|+|+||+++|||||   |||+.+...  ....+.|++|.++...... .  .+.+.+++.
T Consensus        16 ~~P~~~~v~l~~~~~~g~~~CgG~lI~~~~VLTA---AHCv~~~~~--~~~~i~V~~G~~~~~~~~~-g--~~~~~~i~~   87 (268)
T 1wcz_A           16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTN---KHVVDATHG--DPHALKAFPSAINQDNYPN-G--GFTAEQITK   87 (268)
T ss_dssp             SGGGTTEEEEEEEC-CCEEEEEEEECSSSEEEEC---HHHHGGGTT--CGGGEEEEETCCBTTBCTT-C--CEEEEEEEE
T ss_pred             CCCccEEEEEEEEcCCCCEEEEEEEEECCEEEEC---hhhCCCccC--CcceEEEEecccCcccccC-C--cEEEEEEec
Confidence            466664  453      35899999999999999   999965311  1246899999887654332 2  356788888


Q ss_pred             CCCCCCCCCCCCeEEEEecCCc---CCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhh
Q psy15063        190 HSHFHPFVLSNDIALLQLDRPV---PLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC  266 (417)
Q Consensus       190 HP~Y~~~~~~nDIALLkL~~pv---~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C  266 (417)
                      |+.      .+|||||||++++   .|+..++|+||+.......+..++++|||....      ..++.....++..   
T Consensus        88 ~~~------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~------~~~~~~~~g~i~~---  152 (268)
T 1wcz_A           88 YSG------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP------VATMWESKGKITY---  152 (268)
T ss_dssp             CSS------SSCCEEEEECCCTTSCCHHHHSCCCCBCCCSSCCTTCEEEEEECCTTSS------TTCEEEEEEEEEE---
T ss_pred             CCC------CCcEEEEEecCcccccccccccceeecccccccCCCCEEEEEECCCCCC------CceEEeecceEEe---
Confidence            863      5899999999997   477889999998653333799999999996532      2344444444321   


Q ss_pred             hhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeee
Q psy15063        267 STVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCG  346 (417)
Q Consensus       267 ~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cg  346 (417)
                             +...++|.    ..++|+|                                                      
T Consensus       153 -------~~~~~i~~----~~~~c~G------------------------------------------------------  167 (268)
T 1wcz_A          153 -------LKGEAMQY----DLSTTGG------------------------------------------------------  167 (268)
T ss_dssp             -------EETTEEEE----SBCCCTT------------------------------------------------------
T ss_pred             -------eCCCeEEE----ecccCCC------------------------------------------------------
Confidence                   23567887    4689999                                                      


Q ss_pred             eEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        347 GALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       347 gsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                      ||||||++. +++  |+||+||| .+|.  . .+++|+ ++.|++||++++..
T Consensus       168 ----------------dSGGPLv~~-~g~--lvGIvS~G-~~~~--~-~~~~~~-~~~~~~wI~~~i~~  212 (268)
T 1wcz_A          168 ----------------NSGSPVFNE-KNE--VIGIHWGG-VPNE--F-NGAVFI-NENVRNFLKQNIED  212 (268)
T ss_dssp             ----------------CTTCEEECT-TSC--EEEEEEEE-ETTT--E-EEEEEC-CHHHHHHHHHHCTT
T ss_pred             ----------------CccCeEEcc-CCE--EEEEEeCC-ccCC--c-ceeEEc-CHHHHHHHHHHHHh
Confidence                            999999963 444  99999999 7787  2 255555 78999999987753

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.92  E-value=4.1e-25  Score=201.87  Aligned_cols=182  Identities=13%  Similarity=0.109  Sum_probs=125.2

Q ss_pred             CCcceeeEccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCC
Q psy15063        118 TCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV  197 (417)
Q Consensus       118 ~~PW~v~i~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~  197 (417)
                      .|||++.+..++|+|+||+++|||||   |||+.+...   ...+.+..+.   ..  . ..+.+.+.+++.|+.     
T Consensus        12 ~~P~~~~~~~~~c~G~lI~~~~VLTa---aHcv~~~~~---~~~v~v~~~~---~~--~-~~~~~~~~~i~~~~~-----   74 (204)
T 2vid_A           12 IFPYTGVVAFKSATGFVVGKNTILTN---KHVSKNYKV---GDRITAHPNS---DK--G-NGGIYSIKKIINYPG-----   74 (204)
T ss_dssp             STTGGGEEECSSCEEEEEETTEEEEC---HHHHTTCCT---TCEEEESCCS---SS--C-CSCEEEEEEEEECSS-----
T ss_pred             cCchhheEEeeeEEEEEEECCEEEEC---hhHCCCccC---CceEEEEecc---cc--C-CCcEEEeeEEecCCC-----
Confidence            69999988888999999999999999   999965311   1233332221   11  1 234567788887652     


Q ss_pred             CCCCeEEEEecC--------CcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhh
Q psy15063        198 LSNDIALLQLDR--------PVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV  269 (417)
Q Consensus       198 ~~nDIALLkL~~--------pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~  269 (417)
                       .+|||||||++        ++.|++.++|+||+.. .. .+..++++|||......    ..+ ......+.       
T Consensus        75 -~~DiAll~l~~~~~~~~~~~~~~~~~v~pi~l~~~-~~-~g~~~~~~G~g~~~~~~----~~~-~~~~g~v~-------  139 (204)
T 2vid_A           75 -KEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAG-AK-AGERIKVIGYPHPYKNK----YVL-YESTGPVM-------  139 (204)
T ss_dssp             -SSCCEEEEECSEEEEEETTEEEHHHHCCCCCBCSC-CC-TTCEEEEEECCCCCC------CCC-EEEEEEEE-------
T ss_pred             -CCeEEEEEEcCcccccccccccccccccccccCCc-CC-CCCEEEEEeCCCCCCCC----cce-EeeccEEe-------
Confidence             58999999995        6778888999999862 22 78999999999754321    122 22222221       


Q ss_pred             hhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEE
Q psy15063        270 IEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGAL  349 (417)
Q Consensus       270 ~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsl  349 (417)
                         .+...++|.    ..++|+|                                                         
T Consensus       140 ---~~~~~~~~~----~~~~~~G---------------------------------------------------------  155 (204)
T 2vid_A          140 ---SVEGSSIVY----SAHTESG---------------------------------------------------------  155 (204)
T ss_dssp             ---EEETTEEEE----CCCCCGG---------------------------------------------------------
T ss_pred             ---eccCCeEEE----ecccCCC---------------------------------------------------------
Confidence               123568887    4578999                                                         


Q ss_pred             ecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCC--CccccCCCCeEEEecccchhHHhhhhc
Q psy15063        350 LNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVT--GCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       350 i~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~--~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                   ||||||+.. +++  |+||+|+|..  +|. ..+. .+|.. +.|++||+++++
T Consensus       156 -------------dSGGPl~~~-~g~--lvGI~s~g~~~~~~~-~~~~-~~~~~-~~~~~wI~~~~~  203 (204)
T 2vid_A          156 -------------NSGSPVLNS-NNE--LVGIHFASDVKNDDN-RNAY-GVYFT-PEIKKFIAENID  203 (204)
T ss_dssp             -------------GTTCEEECT-TSC--EEEEEEEECC---CC-CCEE-EECCC-HHHHHHHHHHSC
T ss_pred             -------------CccCcEECC-CCe--EEEEEecCccCCCcc-cccc-eeEeC-HHHHHHHHhhcC
Confidence                         999999963 444  9999999942  465 2233 45444 889999999875

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.92  E-value=3.2e-25  Score=202.44  Aligned_cols=182  Identities=9%  Similarity=0.033  Sum_probs=125.4

Q ss_pred             CCcceeeEccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCC
Q psy15063        118 TCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV  197 (417)
Q Consensus       118 ~~PW~v~i~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~  197 (417)
                      .|||++.+..++|+|+||+++|||||   |||+.+..    .....+.++......    ..+.+.+.+++.+   +.  
T Consensus        12 ~~P~~v~~~~~~c~G~lI~~~~VLTa---aHcv~~~~----~~~~~v~v~~~~~~~----~~~~~~~~~i~~~---~~--   75 (200)
T 2w7s_A           12 KEPYNSVVAFVGGTGVVVGKNTIVTN---KHIAKSND----IFKNRVSAHHSSKGK----GGGNYDVKDIVEY---PG--   75 (200)
T ss_dssp             STTGGGEEEETTEEEEEEETTEEEEC---HHHHHHHH----HTTCCEEETCCSSSC----CCCEECEEEEEEC---SS--
T ss_pred             cCCcccccccceEEEEEEECCEEEEC---hhhcCCcc----cCCcEEEEEecCccC----CCcEEEEEEEecC---CC--
Confidence            69999999888999999999999999   99995421    011345555433211    2345667666643   32  


Q ss_pred             CCCCeEEEEecCC----cCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhcc
Q psy15063        198 LSNDIALLQLDRP----VPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEES  273 (417)
Q Consensus       198 ~~nDIALLkL~~p----v~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~  273 (417)
                       .+|||||||+++    +.|++.++|+||+..  ...++.++++||+......     ..+.+...+++.  +       
T Consensus        76 -~~DiAll~l~~~~~~~~~~~~~v~pi~l~~~--~~~g~~v~v~G~p~g~~~~-----~~~~~~~g~v~~--~-------  138 (200)
T 2w7s_A           76 -KEDLAIVHVHETSTEGLNFNKNVSYTKFADG--AKVKDRISVIGYPKGAQTK-----YKMFESTGTINH--I-------  138 (200)
T ss_dssp             -SSSCEEEEECSBCTTSCBGGGSCCCCCBCCC--CCTTCEEEEEECTTHHHHT-----SCEEEEEEEEEE--E-------
T ss_pred             -cceEEEEEECCCCCCcccccccccceecccc--CCCCCEEEEEECCCCCCCc-----cceEEeEEEEEc--c-------
Confidence             589999999996    889999999999842  2279999999986422111     113445555432  1       


Q ss_pred             CCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCc
Q psy15063        274 IGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEH  353 (417)
Q Consensus       274 ~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~  353 (417)
                       ...++|.    ..+.|+|                                                             
T Consensus       139 -~~~~~~~----~~~~~~G-------------------------------------------------------------  152 (200)
T 2w7s_A          139 -SGTFMEF----DAYAQPG-------------------------------------------------------------  152 (200)
T ss_dssp             -ETTEEEE----CSCCCTT-------------------------------------------------------------
T ss_pred             -CCCEEEE----cceeCCC-------------------------------------------------------------
Confidence             2357776    3578999                                                             


Q ss_pred             eeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCcccc-CCCCeE-EEecccchhHHhhhhc
Q psy15063        354 FVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIM-PSYPDL-YTRVSEYIRWIHVNAI  414 (417)
Q Consensus       354 ~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~-~~~p~v-yt~Vs~~~~WI~~~~~  414 (417)
                               ||||||+.. +++  |+||+||| .+|+ . ...+++ |+  +.|++||+++++
T Consensus       153 ---------dSGGPl~~~-~g~--lvGI~s~g-~~~~-~~~~~~~v~~~--~~~~~wI~~~~~  199 (200)
T 2w7s_A          153 ---------NSGSPVLNS-KHE--LIGILYAG-SGKD-ESEKNFGVYFT--PQLKEFIQNNIE  199 (200)
T ss_dssp             ---------CTTCEEECT-TSC--EEEEEEEE-C-----CCCEEEEECC--HHHHHHHHHTSC
T ss_pred             ---------CccCeEECc-CCE--EEEEEecc-ccCC-CCccceeeecH--HHHHHHHHhhcc
Confidence                     999999964 455  99999999 6663 1 223366 66  899999999875

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.92  E-value=1.6e-24  Score=207.80  Aligned_cols=185  Identities=10%  Similarity=0.018  Sum_probs=133.5

Q ss_pred             CCccee--eEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEe
Q psy15063        118 TCDYDV--AIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLF  189 (417)
Q Consensus       118 ~~PW~v--~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~i  189 (417)
                      .|||++  .+.      .++|+|+||+++|||||   |||+.+...  ....+.|++|.++...... .  .+.+.+++.
T Consensus        16 ~~P~~~~v~i~~~~~~~~~~C~G~lI~~~~VLTA---AHCv~~~~~--~~~~i~V~~G~~~~~~~~~-g--~~~~~~i~~   87 (274)
T 2o8l_A           16 NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTN---KHVVDATHG--DPHALKAFPSAINQDNYPN-G--GFTAEQITK   87 (274)
T ss_dssp             SGGGTTEEEEEEEETTEEEEEEEEEEETTEEEEC---HHHHHTTTT--CGGGEEEEETCCBTTBCTT-C--CEEEEEEEE
T ss_pred             CCCcceEEEEEEEcCCCCEEEEEEEEECCEEEEC---hhhCcccCC--CcceEEEEecccCcccccC-c--cEEEEEEEe
Confidence            466664  453      35899999999999999   999965321  1246899999887643332 2  456888888


Q ss_pred             CCCCCCCCCCCCeEEEEecCCc---CCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhh
Q psy15063        190 HSHFHPFVLSNDIALLQLDRPV---PLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC  266 (417)
Q Consensus       190 HP~Y~~~~~~nDIALLkL~~pv---~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C  266 (417)
                      |+.      .+|||||||++++   .|+..++|+||+.......+..++++|||....      ..++.....++.    
T Consensus        88 ~~~------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~------~~~~~~~~g~i~----  151 (274)
T 2o8l_A           88 YSG------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKP------VATMWESKGKIT----  151 (274)
T ss_dssp             CSS------SSCCEEEEECCCTTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTSS------TTCEEEEEEEEE----
T ss_pred             CCC------CCcEEEEEecCcccccccccccccccccccccccCCCEEEEEECCCCCC------CceEEecCceEE----
Confidence            863      5899999999997   488899999998653333799999999997542      123333322222    


Q ss_pred             hhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeee
Q psy15063        267 STVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCG  346 (417)
Q Consensus       267 ~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cg  346 (417)
                            .+...++|.    ..++|.|                                                      
T Consensus       152 ------~~~~~~i~~----~~~~c~G------------------------------------------------------  167 (274)
T 2o8l_A          152 ------YLKGEAMQY----DLSTTGG------------------------------------------------------  167 (274)
T ss_dssp             ------EEETTEEEE----SCCCCTT------------------------------------------------------
T ss_pred             ------ecCCCeEEe----CcccCCC------------------------------------------------------
Confidence                  123457776    4689999                                                      


Q ss_pred             eEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        347 GALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       347 gsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                      ||||||++. +++  |+||+||| .+|.  . .+++|+ ++.|++||++.+.
T Consensus       168 ----------------dSGGPLv~~-~g~--lvGIvS~G-~~~~--~-~~~~~~-~~~~~~wI~~~i~  211 (274)
T 2o8l_A          168 ----------------NSGSPVFNE-KNE--VIGIHWGG-VPNE--F-NGAVFI-NENVRNFLKQNIE  211 (274)
T ss_dssp             ----------------CTTCEEECT-TSC--EEEEEEEE-ETTT--E-EEEEEC-CHHHHHHHHHHCT
T ss_pred             ----------------Cchhheecc-CCe--EEEEEeCc-ccCC--C-CceEEe-cHHHHHHHHHHHh
Confidence                            999999963 444  99999999 7787  2 255554 7899999998775

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.92  E-value=9.6e-26  Score=215.16  Aligned_cols=177  Identities=14%  Similarity=0.127  Sum_probs=119.8

Q ss_pred             cccceEEEeeC------CeEEeeccceeeecCCCCCCCccceEEEeceecCCCCC----------CCCcEEEeeeEEEeC
Q psy15063        127 QDVCAVRIEFE------KVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLN----------ETSHVRRGVRRVLFH  190 (417)
Q Consensus       127 ~~~C~GtLIs~------~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~----------~~~~q~~~V~~i~iH  190 (417)
                      .++|+|+||++      +|||||   |||+.+..  ..+..++|.+|........          ........+..+++|
T Consensus        33 ~~~CGGSLI~~~~~~~~~~VLTA---AHCv~~~~--~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i~h  107 (268)
T 1arb_A           33 TLACTGSLVNNTANDRKMYFLTA---HHCGMGTA--STAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKA  107 (268)
T ss_dssp             EEEEEEEEBCCTTCCCCCEEEEE---GGGSCCSH--HHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEEEE
T ss_pred             ccEEeEEEEcCCCCCCCCEEEEc---HHhCCCcc--CcceEEEEEeCCCCCccccccccccccccCCcceEEeccceEec
Confidence            46999999998      699999   99985310  1234678888764432111          001112237788899


Q ss_pred             CCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCC-------CccceEEEEEEeCh
Q psy15063        191 SHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEP-------SPTLQKLEVKVLSN  263 (417)
Q Consensus       191 P~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~-------~~~L~~~~v~i~~~  263 (417)
                      |.     ..||||||||++|++                 .+..++++|||.+.... ..       +..|+++.+...+.
T Consensus       108 ~~-----~~nDIALLrL~~~v~-----------------~~~~~~vsGWG~t~~~~-~~~~~~~~~~~~l~~i~~~~~~~  164 (268)
T 1arb_A          108 TY-----ATSDFTLLELNNAAN-----------------PAFNLFWAGWDRRDQNY-PGAIAIHHPNVAEKRISNSTSPT  164 (268)
T ss_dssp             EE-----TTTTEEEEEESSCCC-----------------GGGCCEEBCEECCSCCC-SCEEEEECGGGCSCEEEEECSCC
T ss_pred             CC-----CCCceEEEEecCCCC-----------------CCCceEEeCcCccCCCC-CcceeeccCCcccEEEEeecccc
Confidence            83     469999999999852                 24568999999987543 21       12455555554432


Q ss_pred             hhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCe
Q psy15063        264 ARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGM  342 (417)
Q Consensus       264 ~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~  342 (417)
                      .  ...|...+.+.|||++... ..++|+|                                                  
T Consensus       165 ~--~~~~~~~~~~~~iCag~~~~~gdtC~g--------------------------------------------------  192 (268)
T 1arb_A          165 S--FVAWGGGAGTTHLNVQWQPSGGVTEPG--------------------------------------------------  192 (268)
T ss_dssp             E--EECTTSSSCSSEEEEECCTTSCCCCTT--------------------------------------------------
T ss_pred             c--cccccccccCCeEEEeeecCCCCCccC--------------------------------------------------
Confidence            1  0123335678999997542 2379999                                                  


Q ss_pred             eeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccC--CCCeEEEecccchh
Q psy15063        343 FFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMP--SYPDLYTRVSEYIR  407 (417)
Q Consensus       343 ~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~--~~p~vyt~Vs~~~~  407 (417)
                                          ||||||++. +  ++|+||+|||..+|+ .+  +.|+|||||+.|++
T Consensus       193 --------------------dsGgPl~~~-~--~~~~Gi~s~g~~~C~-~~~~~~p~vyt~v~~~~~  235 (268)
T 1arb_A          193 --------------------SSGSPIYSP-E--KRVLGQLHGGPSSCS-ATGTNRSDQYGRVFTSWT  235 (268)
T ss_dssp             --------------------CTTCEEECT-T--SCEEEEEEECSCCTT-CCGGGSEEEEEEHHHHHH
T ss_pred             --------------------cccCCcEee-C--CEEEEEEeecCcccC-CCCCCCCceEEEeeeeec
Confidence                                999999973 3  359999999944798 55  38999999987654

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.91  E-value=5.6e-24  Score=200.06  Aligned_cols=191  Identities=16%  Similarity=0.078  Sum_probs=132.9

Q ss_pred             CCcceeeE-----ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCC-CCcEEEeeeEEEeCC
Q psy15063        118 TCDYDVAI-----RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNE-TSHVRRGVRRVLFHS  191 (417)
Q Consensus       118 ~~PW~v~i-----~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~-~~~q~~~V~~i~iHP  191 (417)
                      .|||++.+     ..++|+|+||+++|||||   |||+.+...  ....+.+..|.++...... ...+.+.+..+..||
T Consensus        40 ~~p~~~~v~i~~~~~~~c~G~lI~~~~VLTA---aHcv~~~~~--~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~  114 (242)
T 1agj_A           40 KYPYNTIGNVFVKGQTSATGVLIGKNTVLTN---RHIAKFANG--DPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP  114 (242)
T ss_dssp             STTGGGEEEEEETTTEEEEEEECSSSEEEEC---HHHHGGGTT--CGGGEEEEETCEECTTSCEECTTCCEEEEEEESCT
T ss_pred             ccccceEEEEEECCCccEEEEEEeCCEEEEC---hhhcccCCC--CceEEEEecCccccccccccccCCceeEEEEEeCC
Confidence            57887543     246899999999999999   999965311  1123445558776432110 012456788889999


Q ss_pred             CCCCCCCCCCeEEEEecCCcC---CCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhh
Q psy15063        192 HFHPFVLSNDIALLQLDRPVP---LTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST  268 (417)
Q Consensus       192 ~Y~~~~~~nDIALLkL~~pv~---~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~  268 (417)
                       |+   ..+|||||||++|+.   |++.++|+||+.......+..++++|||.+...     ..|+...+.+++...   
T Consensus       115 -~~---~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~-----~~l~~~~~~~~~~~~---  182 (242)
T 1agj_A          115 -FG---AGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKV-----NQMHRSEIELTTLSR---  182 (242)
T ss_dssp             -TC---TTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTST-----TCCEEEEEEECCGGG---
T ss_pred             -CC---CCCcEEEEEEcCCCccccccccccceecCccccCCCCCEEEEEeCCCCCCC-----ccceeeeeeEecCCc---
Confidence             85   468999999999965   677899999986533337999999999976532     257777777765321   


Q ss_pred             hhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeE
Q psy15063        269 VIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGA  348 (417)
Q Consensus       269 ~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggs  348 (417)
                               +++.    ..++|+|                                                        
T Consensus       183 ---------~~~~----~~~~c~G--------------------------------------------------------  193 (242)
T 1agj_A          183 ---------GLRY----YGFTVPG--------------------------------------------------------  193 (242)
T ss_dssp             ---------SEEE----ECCCCGG--------------------------------------------------------
T ss_pred             ---------eEEE----eCCcCCC--------------------------------------------------------
Confidence                     2222    2368999                                                        


Q ss_pred             EecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEeccc-chhHHhhh
Q psy15063        349 LLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSE-YIRWIHVN  412 (417)
Q Consensus       349 li~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~-~~~WI~~~  412 (417)
                                    ||||||++. +|+  |+||+||| .+|.-.....++.+.|.. ...||.++
T Consensus       194 --------------dSGGPl~~~-~g~--lvGI~s~g-~~c~~~~~~~~~~~~i~~~~~~~l~~~  240 (242)
T 1agj_A          194 --------------NSGSGIFNS-NGE--LVGIHSSK-VSHLDREHQINYGVGIGNYVKRIINEK  240 (242)
T ss_dssp             --------------GTTCEEECT-TSE--EEEEEEEE-EECSSTTCEEEEEEECCHHHHHHHHHH
T ss_pred             --------------CCchHhccc-CCE--EEEEEecc-ccccCcCCCceeeEEehHHHHHHHHhh
Confidence                          999999964 454  99999999 888512345688899974 44555543

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.86  E-value=1e-21  Score=158.70  Aligned_cols=94  Identities=30%  Similarity=0.599  Sum_probs=85.3

Q ss_pred             CCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeeccccccc
Q psy15063        249 PSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADI  328 (417)
Q Consensus       249 ~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~  328 (417)
                      .++.||++.++++++++|+..+...+++.||||+. .+.++|+|                                    
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~~~~i~~~~iCa~~-~~~~~C~G------------------------------------   45 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGA-SGVSSCMG------------------------------------   45 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHGGGCCTTEEEEEC-SSCBCCTT------------------------------------
T ss_pred             cCccceEEEEEECCHHHhhHHhcCCCCCceEeecC-CCCCCCcC------------------------------------
Confidence            56789999999999999999887678999999994 46799999                                    


Q ss_pred             ccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhH
Q psy15063        329 GEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRW  408 (417)
Q Consensus       329 ~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~W  408 (417)
                                                        ||||||++..+++|+|+||+||| .+|. ..+.|+|||||+.|++|
T Consensus        46 ----------------------------------DSGGPL~~~~~~~~~l~GIvS~g-~~c~-~~~~p~vyt~V~~y~~W   89 (97)
T 1yph_E           46 ----------------------------------DSGGPLVCKKNGAWTLVGIVSWG-SSTC-STSTPGVYARVTALVNW   89 (97)
T ss_dssp             ----------------------------------CTTCEEEEEETTEEEEEEEEEEC-CTTC-CTTSEEEEEEHHHHHHH
T ss_pred             ----------------------------------CCCCcEEEEeCCeEEEEEEEEeC-CCCC-CCCCCeEEEEHHHhHHH
Confidence                                              99999999889999999999999 6776 57899999999999999


Q ss_pred             Hhhhhcc
Q psy15063        409 IHVNAIV  415 (417)
Q Consensus       409 I~~~~~~  415 (417)
                      |+++++.
T Consensus        90 I~~~~~~   96 (97)
T 1yph_E           90 VQQTLAA   96 (97)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            9998864

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.86  E-value=1.1e-22  Score=183.70  Aligned_cols=168  Identities=18%  Similarity=0.183  Sum_probs=118.3

Q ss_pred             ccce-EEEee---CCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeE
Q psy15063        128 DVCA-VRIEF---EKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIA  203 (417)
Q Consensus       128 ~~C~-GtLIs---~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIA  203 (417)
                      ..|+ |.++.   ++|||||   |||+.+.      ..+.+..+.         . +.  +.. +.+.+|    ..||||
T Consensus        12 ~~ct~Gf~v~~~~~~~ilTa---aHcv~~~------~~~~v~~~~---------~-~~--~g~-~~~~~~----~~~DiA   65 (185)
T 2qa9_E           12 GRCSLGFNVRSGSTYYFLTA---GHCTDGA------TTWWANSAR---------T-TV--LGT-TSGSSF----PNNDYG   65 (185)
T ss_dssp             CEEECCEEEEETTEEEEEEC---HHHHTTC------SEEESSTTS---------C-SE--EEE-EEEEEC----SBSCEE
T ss_pred             CcEeccEEEEECCceEEEEC---cccCCCC------CcEEecCCC---------c-eE--eEE-Eecccc----CCCCEE
Confidence            4798 88886   4699999   9999653      223322110         0 11  111 123333    358999


Q ss_pred             EEEecC-CcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEec
Q psy15063        204 LLQLDR-PVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAA  282 (417)
Q Consensus       204 LLkL~~-pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~  282 (417)
                      ||||++ ++.+++.++|++|+.......++.++++||+..     ..+..|+.+.+++ +...|. .+. .+...|+|+ 
T Consensus        66 ll~l~~~~~~~~~~v~~~~l~~~~~~~~g~~v~~~Gw~~~-----~~~g~l~~~~~~v-~~~~~~-~~~-~~~~~~~ca-  136 (185)
T 2qa9_E           66 IVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTG-----THSGSVTALNATV-NYGGGD-VVY-GMIRTNVCA-  136 (185)
T ss_dssp             EEEECCSSSCCCCEETTEECCEECCCCTTCEEEEEETTTE-----EEEEEEEEEEEEE-ECSTTC-EEE-EEEEESCCC-
T ss_pred             EEEecCCCccccCccceeeeCCcccCCCCCEEEEecCCCc-----eeEeEEEEEEEEE-EcCCCC-EEe-ceEEecccC-
Confidence            999999 999999999999985433337999999999642     2345788888876 333442 122 233567776 


Q ss_pred             CCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccc
Q psy15063        283 PDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI  362 (417)
Q Consensus       283 ~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~  362 (417)
                             |+|                                                                      
T Consensus       137 -------c~G----------------------------------------------------------------------  139 (185)
T 2qa9_E          137 -------EPG----------------------------------------------------------------------  139 (185)
T ss_dssp             -------CTT----------------------------------------------------------------------
T ss_pred             -------CCC----------------------------------------------------------------------
Confidence                   899                                                                      


Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhh
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                      ||||||++  ++  .|+||+||| .+|. ..+.|++||+|+.|++||+.++
T Consensus       140 DSGGPlv~--~~--~~vGI~s~g-~~~~-~~~~p~vyt~v~~~~~wI~~~l  184 (185)
T 2qa9_E          140 DSGGPLYS--GT--RAIGLTSGG-SGNC-SSGGTTFFQPVTEALSAYGVSV  184 (185)
T ss_dssp             CTTCEEEE--TT--EEEEEEEEE-EEET-TTEEEEEEEEHHHHHHHHTCEE
T ss_pred             CccceEEE--CC--EEEEEEEec-CCCC-CCCCcEEEEEHHHHHHhhCcEE
Confidence            99999998  45  599999999 5654 3778999999999999998764

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.85  E-value=3.6e-21  Score=177.17  Aligned_cols=180  Identities=9%  Similarity=0.056  Sum_probs=125.0

Q ss_pred             CCcceeeEccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCC
Q psy15063        118 TCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV  197 (417)
Q Consensus       118 ~~PW~v~i~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~  197 (417)
                      .|||++.+..+.|+|+||+++|||||   |||+.+..   ....+.|.+|....      ..+.+.+.+++.+   +.  
T Consensus        13 ~~P~~v~~~~~~c~G~lI~~~~VLTa---aHcv~~~~---~~~~i~v~~~~~~~------~g~~~~~~~v~~~---~~--   75 (210)
T 2as9_A           13 NFPYNGVVSFKDATGFVIGKNTIITN---KHVSKDYK---VGDRITAHPNGDKG------NGGIYKIKSISDY---PG--   75 (210)
T ss_dssp             STTGGGEEECSSCEEEEEETTEEEEC---HHHHHHCC---TTCEEEESCCGGGC------CSCEEEEEEEEEC---SS--
T ss_pred             cCCeEEEEEeeeEEEEEEeCCEEEEC---HhHCCccC---CCCEEEEEeCcccC------CCCEEEEEEEEeC---CC--
Confidence            69999999888999999999999999   99996421   11356676665321      2345666666653   32  


Q ss_pred             CCCCeEEEEecC--------CcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhh
Q psy15063        198 LSNDIALLQLDR--------PVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV  269 (417)
Q Consensus       198 ~~nDIALLkL~~--------pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~  269 (417)
                       .+|||||||+.        |+.|++.++|+||+. . ...++.++++|||......    ..| .+...+++..     
T Consensus        76 -~~DiAll~l~~~~~~~~~~~~~~~~~v~~i~l~~-~-~~~g~~v~v~G~p~~~~~~----~~l-~~~~g~v~~~-----  142 (210)
T 2as9_A           76 -DEDISVMNIEEQAVERGPKGFNFNENVQAFNFAK-D-AKVDDKIKVIGYPLPAQNS----FKQ-FESTGTIKRI-----  142 (210)
T ss_dssp             -SSSCEEEEECSEEEEEETTEEEGGGSCCCCCBCS-C-CCTTCEEEEEECSSTTTTT----SCC-EEEEEEEEEE-----
T ss_pred             -CCcEEEEEecCccccccccccccccccceeecCC-C-CCCCCEEEEEeCCCCCCCC----cce-EEeeeEEccc-----
Confidence             58999999998        688999999999974 2 2279999999998743221    123 4555555432     


Q ss_pred             hhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEE
Q psy15063        270 IEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGAL  349 (417)
Q Consensus       270 ~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsl  349 (417)
                           ...++|..    .+.|.|                                                         
T Consensus       143 -----~~~~i~~~----~~~~~G---------------------------------------------------------  156 (210)
T 2as9_A          143 -----KDNILNFD----AYIEPG---------------------------------------------------------  156 (210)
T ss_dssp             -----ETTEEEEE----CCCCTT---------------------------------------------------------
T ss_pred             -----cCCeEEEc----CccCCC---------------------------------------------------------
Confidence                 14578874    468999                                                         


Q ss_pred             ecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEec-ccchhHHhhh
Q psy15063        350 LNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRV-SEYIRWIHVN  412 (417)
Q Consensus       350 i~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~V-s~~~~WI~~~  412 (417)
                                   ||||||++. +|+  |+||+||+...++  .... .|+.+ ..+++|++..
T Consensus       157 -------------dSGGPlv~~-~g~--lvGI~s~g~~~~~--~~~~-~~~~~~~~i~~f~~~~  201 (210)
T 2as9_A          157 -------------NSGSPVLNS-NNE--VIGVVYGGIGKIG--SEYN-GAVYFTPQIKDFIQKH  201 (210)
T ss_dssp             -------------CTTCEEECT-TSC--EEEEECCSCCCTT--CSSE-EEEECCHHHHHHHHTT
T ss_pred             -------------CccCcEECC-CCe--EEEEEecccccCC--cccc-ccEEEcHHHHHHHHHh
Confidence                         999999964 566  9999999943333  2222 35555 4466776543

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.83  E-value=2e-20  Score=176.41  Aligned_cols=116  Identities=10%  Similarity=0.115  Sum_probs=86.5

Q ss_pred             CCcceeeE-----ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCC-CC-CCCcEEEeeeEEEeC
Q psy15063        118 TCDYDVAI-----RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQ-LN-ETSHVRRGVRRVLFH  190 (417)
Q Consensus       118 ~~PW~v~i-----~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~-~~-~~~~q~~~V~~i~iH  190 (417)
                      .|||++.+     ..++|+|+||+++|||||   |||+.+...  ....+.+..|.++... .. ......+.+..++.|
T Consensus        33 ~~P~~~~~~i~~~~~~~c~G~lI~~~~VLTA---aHcv~~~~~--~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~h  107 (246)
T 1qtf_A           33 RSPYNSVGTVFVKGSTLATGVLIGKNTIVTN---YHVAREAAK--NPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKES  107 (246)
T ss_dssp             STTGGGEEEEEETTTEEEEEEEEETTEEEEC---HHHHGGGTT--CGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESC
T ss_pred             cCchhcEEEEEECCCceEEEEEEECCEEEEC---HHhCCCCCC--CceEEEEecCccccccccccccCCceEEEEEEEeC
Confidence            68998653     246899999999999999   999965311  1246888888765432 10 001246778899999


Q ss_pred             CCCCCCCCCCCeEEEEecCCc---CCCCceeeeeCCCCCCccCCCeEEEEEcCcc
Q psy15063        191 SHFHPFVLSNDIALLQLDRPV---PLTGTIQPVCLPQKGESFIGKRGHVVGWGVT  242 (417)
Q Consensus       191 P~Y~~~~~~nDIALLkL~~pv---~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~  242 (417)
                      | |+   ..+|||||+|++++   .|++.++|+||+.......++.++++||+..
T Consensus       108 p-~~---~~~DiALLkl~~~~~~~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g  158 (246)
T 1qtf_A          108 P-YG---QGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYN  158 (246)
T ss_dssp             T-TC---TTSCCEEEEECCCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTT
T ss_pred             C-CC---CCCCEEEEEEeCCccccccccceeeeecCCccccCCCCEEEEEECCCC
Confidence            9 65   46899999999998   6777899999996543337999999999754

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.72  E-value=1.4e-18  Score=155.98  Aligned_cols=158  Identities=17%  Similarity=0.198  Sum_probs=109.3

Q ss_pred             ccce-EEEee---CCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeE
Q psy15063        128 DVCA-VRIEF---EKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIA  203 (417)
Q Consensus       128 ~~C~-GtLIs---~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIA  203 (417)
                      ..|+ |.||+   ++|||||   |||+...        ..+.+|.++.                   +.|    ..||||
T Consensus        12 ~~ct~G~~v~~~~~~~vlTa---aHc~~~~--------~~~~~G~~~~-------------------~~~----~~~DiA   57 (181)
T 2sga_A           12 SRCSLGFNVSVNGVAHALTA---GHCTNIS--------ASWSIGTRTG-------------------TSF----PNNDYG   57 (181)
T ss_dssp             EEEECCEEEEETTEEEEEEC---HHHHTTC--------SEETTEEEEE-------------------EEC----SBSCEE
T ss_pred             CcEeccEEEEECCceEEEEC---cccCCCC--------CceeecceeC-------------------CcC----CCCCEE
Confidence            4799 99998   6899999   9998542        2345554420                   112    257999


Q ss_pred             EEEecCCcCCCCceeee----eCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCe
Q psy15063        204 LLQLDRPVPLTGTIQPV----CLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM  278 (417)
Q Consensus       204 LLkL~~pv~~s~~v~Pi----cLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~  278 (417)
                      ||||++++.+++.++++    +++...... .++.+.+.||+...     ....++.+.+++ +...+. .+     ..+
T Consensus        58 likl~~~~~~~~~v~~i~~~~~~~~~~~~~~~G~~v~~~G~~~~~-----t~G~v~~~~~~v-~~~~~~-~~-----~~~  125 (181)
T 2sga_A           58 IIRHSNPAAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGL-----RSGSVTGLNATV-NYGSSG-IV-----YGM  125 (181)
T ss_dssp             EEEESCGGGCCCEEECSSSCEEECCEECCCCTTCEEEEEETTTEE-----EEEEEEEEEEEE-ECGGGC-EE-----EEE
T ss_pred             EEEccCCCcccceEEecCCcceeecccccCCCCCEEEEeecCCCc-----cEEEEEEeEEEE-ECCCCC-EE-----eee
Confidence            99999999999899998    777532222 79999999987432     123466676665 333332 11     123


Q ss_pred             EEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeec
Q psy15063        279 LCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTA  358 (417)
Q Consensus       279 iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLta  358 (417)
                      ++.    ..-+|.|                                                                  
T Consensus       126 i~~----~~c~~~G------------------------------------------------------------------  135 (181)
T 2sga_A          126 IQT----NVCAQPG------------------------------------------------------------------  135 (181)
T ss_dssp             EEE----SCCCCTT------------------------------------------------------------------
T ss_pred             Eec----ccccCCC------------------------------------------------------------------
Confidence            332    1123567                                                                  


Q ss_pred             cccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhh
Q psy15063        359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       359 AhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                          ||||||++  ++  .++||+||+...|.  .+.|++|++|+.|++|+.-
T Consensus       136 ----DSGGPlv~--~~--~~vGI~s~g~~~~~--~~~~~v~~~v~~~~~~l~v  178 (181)
T 2sga_A          136 ----DSGGSLFA--GS--TALGLTSGGSGNCR--TGGTTFYQPVTEALSAYGA  178 (181)
T ss_dssp             ----CTTCEEEE--TT--EEEEEEEEEEEETT--TEEEEEEEEHHHHHHHHTE
T ss_pred             ----CCCCEEEE--CC--EEEEEEEeeCCCCc--CCCceEEEEHHHHHHhcCc
Confidence                99999998  55  59999999943576  5679999999999999863

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.69  E-value=4.5e-17  Score=126.41  Aligned_cols=76  Identities=21%  Similarity=0.216  Sum_probs=64.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.++.++   +|||++++.   .++|+|+||+++|||||   |||+.+        .+.|++|.+++..... ..+.
T Consensus         1 IvgG~~a~~~---~~Pw~v~l~~~~~~~CgGslIs~~~VLTA---AHC~~~--------~~~v~~G~~~~~~~~~-~~~~   65 (80)
T 2pka_A            1 IIGGRECEKN---SHPWQVAIYHYSSFQCGGVLVNPKWVLTA---AHCKND--------NYEVWLGRHNLFENEN-TAQF   65 (80)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCCS--------CCEEEESCSBTTSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCceEEEEEEEcCCEEEEC---HHHCCC--------CcEEEEeeeEcCCCCC-CcEE
Confidence            4678888887   599999995   46899999999999999   999953        3579999998876554 5688


Q ss_pred             EeeeEEEeCCCCCC
Q psy15063        182 RGVRRVLFHSHFHP  195 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~  195 (417)
                      +.|+++++||+|+.
T Consensus        66 ~~v~~i~~Hp~y~~   79 (80)
T 2pka_A           66 FGVTADFPHPGFNL   79 (80)
T ss_dssp             EEEEEEEECTTTTT
T ss_pred             EEEEEEEECcCCCC
Confidence            89999999999975

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.57  E-value=3.1e-14  Score=133.13  Aligned_cols=165  Identities=12%  Similarity=0.067  Sum_probs=107.3

Q ss_pred             ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEe
Q psy15063        128 DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL  207 (417)
Q Consensus       128 ~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL  207 (417)
                      ..|+|+||+++|||||   |||+.+.      ..+.|.++.           ..+....+..||       .+|||||||
T Consensus        58 ~~GsG~iI~~~~VlTa---aH~v~~~------~~~~V~~~~-----------~~~~~~~v~~~~-------~~DiAll~l  110 (237)
T 3k6y_A           58 LEGTGFVISPDRVMTN---AHVVAGS------NNVTVYAGD-----------KPFEATVVSYDP-------SVDVAILAV  110 (237)
T ss_dssp             EEEEEEEEETTEEEEC---GGGTTTC------SEEEEEETT-----------EEEECEEEEEET-------TTTEEEEEC
T ss_pred             eeEEEEEEECCEEEEC---HHHcCCC------ceEEEEECC-----------cEEEEEEEEEcC-------CCCEEEEEe
Confidence            3899999999999999   9999643      567888875           123344455565       379999999


Q ss_pred             cCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhcc--CCCCeEEecCCC
Q psy15063        208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEES--IGIGMLCAAPDE  285 (417)
Q Consensus       208 ~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~--~~~~~iCa~~~~  285 (417)
                      +     +..++|++|+..... .++.+++.||+....      ..+....+..+....|...+...  ....+++.    
T Consensus       111 ~-----~~~~~~~~l~~~~~~-~G~~v~v~G~p~g~~------~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~----  174 (237)
T 3k6y_A          111 P-----HLPPPPLVFAAEPAK-TGADVVVLGYPGGGN------FTATPARIREAIRLSGPDIYGDPEPVTRDVYTI----  174 (237)
T ss_dssp             T-----TCCSCCCCBCSSCCC-TTCEEEEEECGGGCS------CEEEEEEEEEEEEEEECCTTCCSSCEEEEEEEE----
T ss_pred             C-----CCCCCceecCCCCCC-CCCEEEEEECCCCCC------CccceeEEEeeEeecccccccCCCcccccEEEe----
Confidence            8     346889999833222 899999999986432      22333333333333343333211  11123333    


Q ss_pred             CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        286 TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       286 ~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      ....|.|                                                                      |||
T Consensus       175 ~~~~~~G----------------------------------------------------------------------dSG  184 (237)
T 3k6y_A          175 RADVEQG----------------------------------------------------------------------DSG  184 (237)
T ss_dssp             ESCCCTT----------------------------------------------------------------------CTT
T ss_pred             cCccCCC----------------------------------------------------------------------ccH
Confidence            3467888                                                                      999


Q ss_pred             CceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhh
Q psy15063        366 GPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN  412 (417)
Q Consensus       366 gPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~  412 (417)
                      |||+.. +|+  |+||+|++... .   ..-+....+...++||++.
T Consensus       185 GPLv~~-~G~--vvGI~s~~~~~-~---~~~~~aip~~~v~~~l~~~  224 (237)
T 3k6y_A          185 GPLIDL-NGQ--VLGVVFGAAID-D---AETGFVLTAGEVAGQLAKI  224 (237)
T ss_dssp             CEEECT-TSC--EEEEEEEECSS-S---TTEEEEEEHHHHHGGGGGT
T ss_pred             HHEECC-CCE--EEEEEEeeccC-C---CcEEEEEEHHHHHHHHHHc
Confidence            999964 577  99999998321 1   1235667777777777665

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.48  E-value=1.4e-13  Score=128.90  Aligned_cols=170  Identities=12%  Similarity=0.044  Sum_probs=111.3

Q ss_pred             cccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        127 QDVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       127 ~~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      ...|+|+||+++ ||||+   |||+.+.      ..+.|.++..          +.+.++-+.    |+   ..+|||||
T Consensus        55 ~~~gsG~iI~~~g~ILTn---aHvv~~~------~~i~V~~~~g----------~~~~a~vv~----~d---~~~DlAll  108 (239)
T 1l1j_A           55 ASLGSGFIFDPEGYILTN---YHVVGGA------DNITVTMLDG----------SKYDAEYIG----GD---EELDIAVI  108 (239)
T ss_dssp             EEEEEEEEEETTTEEEEE---HHHHSSC------SSCEEECTTS----------CEEEBCCCE----EE---TTTTEEEE
T ss_pred             CceEEEEEEeCCCEEEEC---hHHhCCC------CEEEEEECCC----------CEEEEEEEE----Ec---CCCCEEEE
Confidence            368999999986 99999   9999653      5678887631          223333221    22   35899999


Q ss_pred             EecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhc--cCCCCeEEecC
Q psy15063        206 QLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE--SIGIGMLCAAP  283 (417)
Q Consensus       206 kL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~--~~~~~~iCa~~  283 (417)
                      ||+.++   ..+.|++|+.......++.+++.||+....      .   .+..-+++...|.-....  .....+||+. 
T Consensus       109 kl~~~~---~~~~~~~l~~s~~~~~G~~v~~iG~p~g~~------~---~vt~Givs~~~r~~~~~~~~~~~~~~i~td-  175 (239)
T 1l1j_A          109 KIKASD---KKFPYLEFGDSDKVKIGEWAIAIGNPLGFQ------H---TVTVGVVSATNRRIPKPDGSGYYVGLIQTD-  175 (239)
T ss_dssp             EBCCSS---SCCCCCEECCGGGCCTTCEEEEEECTTSSS------C---EEEEEEEEEEEEEEECTTSSCEEEEEEEES-
T ss_pred             EEcCCC---CCCceEEecCccCCccccEEEEEECCCCCC------C---cEEEEEEeccccccccCCCccccCCEEEEC-
Confidence            999876   467899998653322799999999986431      1   222223332222200000  0124688873 


Q ss_pred             CCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        284 DETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       284 ~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                         ...|.|                                                                      |
T Consensus       176 ---a~i~~G----------------------------------------------------------------------~  182 (239)
T 1l1j_A          176 ---AAINPG----------------------------------------------------------------------N  182 (239)
T ss_dssp             ---SCCCTT----------------------------------------------------------------------T
T ss_pred             ---CCCCCC----------------------------------------------------------------------C
Confidence               468899                                                                      9


Q ss_pred             CCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhh
Q psy15063        364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       364 sGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                      |||||+.. +|+  |+||.|++ .. .-....-+....+...++++++.+
T Consensus       183 SGGPLv~~-~G~--vvGI~s~~-~~-~~~~~g~~faIP~~~~~~~~~~l~  227 (239)
T 1l1j_A          183 SGGPLLNI-HGE--VIGINTAI-VN-PQEAVNLGFAIPINTVKKFLDTIL  227 (239)
T ss_dssp             TTSEEECS-SSE--EEEEECCC-SC-CCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred             ccHHhccC-CCe--EEEEEeee-ec-CCCcCceEEEEEHHHHHHHHHHHH
Confidence            99999953 676  99999998 33 201124567888888888888765

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.48  E-value=2.2e-14  Score=111.10  Aligned_cols=45  Identities=51%  Similarity=0.823  Sum_probs=42.1

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +++|.++.+++|||+++|+..+.++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGslIs~~~VLTAAHC~~~   45 (80)
T 2pka_A            1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKND   45 (80)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCS
T ss_pred             CCCCEECCCCCCCcEEEEEECCceEEEEEEEcCCEEEECHHHCCC
Confidence            578999999999999999988899999999999999999999853

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.47  E-value=2.2e-13  Score=134.66  Aligned_cols=174  Identities=17%  Similarity=0.110  Sum_probs=116.1

Q ss_pred             cccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        127 QDVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       127 ~~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      ...|+|.||+++ ||||+   |||+.+.      ..+.|.++.          ...+...-+..+|       .+|||||
T Consensus        52 ~g~GSG~iI~~~G~IlT~---aHvv~~~------~~i~V~~~~----------g~~~~a~~v~~d~-------~~DlAlL  105 (348)
T 3qo6_A           52 QGSGSGFVWDKQGHIVTN---YHVIRGA------SDLRVTLAD----------QTTFDAKVVGFDQ-------DKDVAVL  105 (348)
T ss_dssp             EEEEEEEEEETTTEEEEC---HHHHTTC------SEEEEECTT----------SCEEEEEEEEEEG-------GGTEEEE
T ss_pred             CceEEEEEEeCCCEEEEC---HHHhCCC------cEEEEEECC----------CCEEEEEEEEEcC-------cCCEEEE
Confidence            357999999998 99999   9999653      567777642          1233444444444       3699999


Q ss_pred             EecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC
Q psy15063        206 QLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE  285 (417)
Q Consensus       206 kL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~  285 (417)
                      ||+.|.   ..+.|++|+.......|+.+++.||+....      ..+....+..+....|..... .....+++.    
T Consensus       106 kl~~~~---~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~------~~~~~g~vs~~~~~~~~~~~~-~~~~~~i~~----  171 (348)
T 3qo6_A          106 RIDAPK---NKLRPIPVGVSADLLVGQKVFAIGNPFGLD------HTLTTGVISGLRREISSAATG-RPIQDVIQT----  171 (348)
T ss_dssp             ECCCCG---GGCCCCCBCCSTTCCTTCEEEEEECGGGCT------TEEEEEEEEEEEEEECCSSSS-SCEEEEEEE----
T ss_pred             EEcCCC---CCceeEEecCcccCCCCCEEEEEECCCCCC------CcEeEEEEEeeccccccccCC-CcccCEEEE----
Confidence            999873   467899998755433899999999986432      223333333332222221111 111234444    


Q ss_pred             CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        286 TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       286 ~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      ....|.|                                                                      +||
T Consensus       172 da~i~~G----------------------------------------------------------------------~SG  181 (348)
T 3qo6_A          172 DAAINPG----------------------------------------------------------------------NSG  181 (348)
T ss_dssp             CSCCCTT----------------------------------------------------------------------CTT
T ss_pred             eCCcCCC----------------------------------------------------------------------CcH
Confidence            3466778                                                                      999


Q ss_pred             CceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        366 GPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       366 gPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                      |||+.. +|+  |+||+|++...++ .....+++..+...++||.+.+.
T Consensus       182 GPLvn~-~G~--vvGI~s~~~~~~~-~~~g~gfaiP~~~~~~~~~~l~~  226 (348)
T 3qo6_A          182 GPLLDS-SGT--LIGINTAIYSPSG-ASSGVGFSIPVDTVGGIVDQLVR  226 (348)
T ss_dssp             CEEECT-TSC--EEEEEEEEECSSS-SCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             HHhhCC-CCe--EEEEEEeeecCCC-CcccEEEEEEecchHHHHHHHHh
Confidence            999954 677  9999999854454 34567899999999999987653

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.45  E-value=5.4e-13  Score=124.28  Aligned_cols=167  Identities=13%  Similarity=0.091  Sum_probs=104.7

Q ss_pred             ccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEE
Q psy15063        128 DVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ  206 (417)
Q Consensus       128 ~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLk  206 (417)
                      ..++|+||+++ ||||+   |||+.+      ...+.|.++.          ...+.+.-+..+|       .+||||||
T Consensus        63 ~~GSG~iI~~~G~VLTa---aHvv~~------~~~i~V~~~~----------g~~~~a~v~~~d~-------~~DlAlL~  116 (231)
T 3tjo_A           63 ASGSGFIVSEDGLIVTN---AHVVTN------KHRVKVELKN----------GATYEAKIKDVDE-------KADIALIK  116 (231)
T ss_dssp             EEEEEEECSTTCEEEEE---TTTCCS------SSEEEEECTT----------SCEEEEEEEEEET-------TTTEEEEE
T ss_pred             ceEEEEEEeCCCEEEEc---hhcccC------CceEEEEcCC----------CCEEEEEEEEecC-------CCCEEEEE
Confidence            47999999998 99999   999965      2567777642          1334444455555       47999999


Q ss_pred             ecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCCC
Q psy15063        207 LDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDET  286 (417)
Q Consensus       207 L~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~~  286 (417)
                      |+.+.    .+.|++|+.......++.+++.||+...      ...+....+.-.....+...+. .....++|..    
T Consensus       117 l~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~g~------~~~~~~g~vs~~~~~~~~~~~~-~~~~~~i~~d----  181 (231)
T 3tjo_A          117 IDHQG----KLPVLLLGRSSELRPGEFVVAIGSPFSL------QNTVTTGIVSTTQRGGKELGLR-NSDMDYIQTD----  181 (231)
T ss_dssp             CCCSS----CCCCCCBCCGGGCCTTCEEEEEEEEETT------EEEEEEEEEEECC--------------CCEEES----
T ss_pred             ecCCC----CCCceecCCcCCCCCCCEEEEEECCCCC------CCceeeEEEeeccccccccccC-CCcccEEEEc----
Confidence            99763    4567888665433379999999998632      1112222222222111111110 1122355553    


Q ss_pred             CCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCC
Q psy15063        287 QGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       287 ~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      ...|.|                                                                      ||||
T Consensus       182 a~i~~G----------------------------------------------------------------------~SGG  191 (231)
T 3tjo_A          182 AIINYG----------------------------------------------------------------------NAGG  191 (231)
T ss_dssp             SCCCTT----------------------------------------------------------------------TTTS
T ss_pred             CCcCCC----------------------------------------------------------------------Cchh
Confidence            356677                                                                      9999


Q ss_pred             ceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        367 PLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       367 PL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                      ||+.. +|+  |+||+||+ ..++     -+....+...++|+.+..+
T Consensus       192 PLv~~-~G~--vVGI~s~~-~~~g-----~~~aip~~~i~~~l~~~~~  230 (231)
T 3tjo_A          192 PLVNL-DGE--VIGINTLK-VTAG-----ISFAIPSDKIKKFLTESHD  230 (231)
T ss_dssp             EEECT-TSC--EEEEEEEE-EETT-----EEEEEEHHHHHHHHHHHHT
T ss_pred             HeecC-CCe--EEEEEeEE-ecCC-----eEEEEEHHHHHHHHHHHhh
Confidence            99943 577  99999998 3332     3567888888888887543

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.43  E-value=1.4e-12  Score=127.45  Aligned_cols=99  Identities=13%  Similarity=0.148  Sum_probs=67.1

Q ss_pred             CcceeeEcc------ccceEEEeeC-CeEEeeccceeeecCCCCC---CCccceEEEeceecCCCCCCCCcEEEeeeEEE
Q psy15063        119 CDYDVAIRQ------DVCAVRIEFE-KVNLARKVGGVCDIDQLRD---TPVSELVLHLGDHDLTQLNETSHVRRGVRRVL  188 (417)
Q Consensus       119 ~PW~v~i~~------~~C~GtLIs~-~~VLTA~~~A~Cv~~~~~~---~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~  188 (417)
                      .|+.|.|..      ..|+|+||++ .||||+   |||+.+....   .....+.|.++..          +.+.++ ++
T Consensus        16 ~~svV~I~~~~~~~~~~gsG~iI~~~g~ILT~---aHvv~~~~~~~~~~~~~~i~V~~~~g----------~~~~a~-vv   81 (324)
T 1y8t_A           16 VPSVVMLETDLGRQSEEGSGIILSAEGLILTN---NHVIAAAAKPPLGSPPPKTTVTFSDG----------RTAPFT-VV   81 (324)
T ss_dssp             GGGEEEEEEEC----CEEEEEECCTTSEEEEE---HHHHTTCC--------CEEEEEETTC----------CEECEE-EE
T ss_pred             cCcEEEEEEEccCCCceEEEEEEeCCCEEEEC---hHHcCCcccccccCCceEEEEEeCCC----------CEEEEE-EE
Confidence            577777743      5899999998 699999   9999653110   0123678888631          223332 22


Q ss_pred             eCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        189 FHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       189 iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                       +  |+   ..+|||||||+.+    ..+.|++|+.......++.+++.||..
T Consensus        82 -~--~d---~~~DlAllkl~~~----~~~~~~~l~~~~~~~~G~~v~~~G~p~  124 (324)
T 1y8t_A           82 -G--AD---PTSDIAVVRVQGV----SGLTPISLGSSSDLRVGQPVLAIGSPL  124 (324)
T ss_dssp             -E--CC---TTTTEEEEEECSC----CSCCCCEECCSTTCCTTCEEEEEECGG
T ss_pred             -E--eC---CCCCEEEEEECCC----CCCceEEecCcccCCCCCEEEEEEcCC
Confidence             1  33   2589999999987    357799998653333799999999954

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.37  E-value=2.3e-12  Score=126.05  Aligned_cols=162  Identities=13%  Similarity=0.104  Sum_probs=109.2

Q ss_pred             ccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEE
Q psy15063        128 DVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ  206 (417)
Q Consensus       128 ~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLk  206 (417)
                      ..|+|.||+++ ||||+   |||+.+.      ..+.|.++..          +.+.++ ++   .|+   ..+||||||
T Consensus        47 ~~gsG~iI~~~G~IlT~---aHvv~~~------~~i~V~~~~g----------~~~~a~-v~---~~d---~~~DlAllk  100 (325)
T 1lcy_A           47 SNGSGFVVAADGLIVTN---AHVVADR------RRVRVRLLSG----------DTYEAV-VT---AVD---PVADIATLR  100 (325)
T ss_dssp             EEEEEEEEETTTEEEEC---HHHHTTC------SEEEEECTTS----------CEEEEE-EE---EEE---TTTTEEEEE
T ss_pred             ccEEEEEEeCCCEEEEC---HHHcCCC------CEEEEEeCCC----------CEEEEE-EE---EEC---CCCCEEEEE
Confidence            58999999998 99999   9999753      5677877531          223332 22   122   258999999


Q ss_pred             ecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhh-hhc-cCCCCeEEecCC
Q psy15063        207 LDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV-IEE-SIGIGMLCAAPD  284 (417)
Q Consensus       207 L~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~-~~~-~~~~~~iCa~~~  284 (417)
                      |+.+.    .+.|++|+.......++.+++.||+....         +.+...+++...|... ++. .....+||+.  
T Consensus       101 l~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~~~~---------~~v~~G~vs~~~~~~~~~g~~~~~~~~i~~d--  165 (325)
T 1lcy_A          101 IQTKE----PLPTLPLGRSADVRQGEFVVAMGSPFALQ---------NTITSGIVSSAQRPARDLGLPQTNVEYIQTD--  165 (325)
T ss_dssp             CCCSS----CCCCCCBCCGGGCCTTCEEEECCCTTSSS---------SCCEEEEBCSCSCC---------CCCCEEES--
T ss_pred             EcCCC----CCceEEecccccCCCCCEEEEEECCCCCC---------CcEEeEEEecccccccccCCCCCCCCEEEEc--
Confidence            99763    46788888643222799999999997432         2345667777777532 111 2456789984  


Q ss_pred             CCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        285 ETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       285 ~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                        ...|.|                                                                      +|
T Consensus       166 --~~~~~G----------------------------------------------------------------------~S  173 (325)
T 1lcy_A          166 --AAIDFG----------------------------------------------------------------------NA  173 (325)
T ss_dssp             --SCCSTT----------------------------------------------------------------------TT
T ss_pred             --CCCCCC----------------------------------------------------------------------Cc
Confidence              467899                                                                      99


Q ss_pred             CCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhh
Q psy15063        365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       365 GgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                      ||||+.. +|+  |+||.+++ ..     ..-+....+....+|+++
T Consensus       174 GGPl~~~-~G~--vVGI~s~~-~~-----~g~~~aip~~~i~~~l~~  211 (325)
T 1lcy_A          174 GGPLVNL-DGE--VIGVNTMK-VT-----AGISFAIPSDRLREFLHR  211 (325)
T ss_dssp             TSEEEET-TSC--EEEEEEEE-EE-----TTEEEEEEHHHHHHHTCC
T ss_pred             cccEECC-CCE--EEEEEeEe-ec-----CCeeEEEEHHHHHHHHHH
Confidence            9999964 677  99999998 21     123566667666666654

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.35  E-value=1.3e-11  Score=115.26  Aligned_cols=170  Identities=13%  Similarity=0.040  Sum_probs=108.0

Q ss_pred             ccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEE
Q psy15063        128 DVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ  206 (417)
Q Consensus       128 ~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLk  206 (417)
                      ..++|.||+++ ||||+   |||+.+.      ..+.|.++.          ...+...-+..||.       +||||||
T Consensus        53 ~~GsG~ii~~~G~IlTa---aHvv~~~------~~~~V~~~~----------g~~~~a~vv~~d~~-------~DlAll~  106 (237)
T 3lgi_A           53 TLGSGVIMDQRGYIITN---KHVINDA------DQIIVALQD----------GRVFEALLVGSDSL-------TDLAVLK  106 (237)
T ss_dssp             EEEEEEEEETTTEEEEE---HHHHTTC------SEEEEECTT----------SCEEEEEEEEEETT-------TTEEEEE
T ss_pred             eEEEEEEEeCCCEEEEe---eeecCCC------CEEEEEeCC----------CCEEEEEEEEEcCC-------CCEEEEE
Confidence            47999999998 99999   9999653      556776642          23344555556654       6999999


Q ss_pred             ecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCCC
Q psy15063        207 LDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDET  286 (417)
Q Consensus       207 L~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~~  286 (417)
                      |+.+.    .+.|++|+.......++.+++.||+....      ..+....+.......+..    .....+++..    
T Consensus       107 l~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~~~~------~~~~~g~vs~~~~~~~~~----~~~~~~i~~d----  168 (237)
T 3lgi_A          107 INATG----GLPTIPINARRVPHIGDVVLAIGNPYNLG------QTITQGIISATGRIGLNP----TGRQNFLQTD----  168 (237)
T ss_dssp             CCCSS----CCCCCCCCTTCCCCTTBEEEEEECGGGSC------SEEEEEEEEEECCSSCCT----TSCSCCEEEC----
T ss_pred             ecCCC----CCceEeccCcccCCCCCEEEEEECCCCCC------CcEEEEEEEecccccccC----CCcCCEEEEc----
Confidence            99765    35678887643333899999999986421      222333333332222211    1223455552    


Q ss_pred             CCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCC
Q psy15063        287 QGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       287 ~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      ...|.|                                                                      +|||
T Consensus       169 ~~i~~G----------------------------------------------------------------------~SGG  178 (237)
T 3lgi_A          169 ASINHG----------------------------------------------------------------------NSGG  178 (237)
T ss_dssp             SCCCTT----------------------------------------------------------------------CTTC
T ss_pred             CccCCC----------------------------------------------------------------------CchH
Confidence            346778                                                                      9999


Q ss_pred             ceEEeeCCeEEEEeEEEEcCCCccc--cCCCCeEEEecccchhHHhhhhc
Q psy15063        367 PLTFEQDGYHVLAGIVSYGVTGCAI--MPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       367 PL~~~~~g~~~l~GI~S~g~~~C~~--~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                      ||+.. +|+  |+||+|++...-..  ....-+....+...++++++.+.
T Consensus       179 Plv~~-~G~--vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~  225 (237)
T 3lgi_A          179 ALVNS-LGE--LMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  225 (237)
T ss_dssp             EEECT-TCC--EEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             HeeCC-CCe--EEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHH
Confidence            99964 677  99999997311110  01224566777777788776553

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.35  E-value=1.2e-11  Score=121.35  Aligned_cols=85  Identities=14%  Similarity=0.102  Sum_probs=62.0

Q ss_pred             ccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEE
Q psy15063        128 DVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ  206 (417)
Q Consensus       128 ~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLk  206 (417)
                      ..++|+||+++ |||||   |||+.+.      ..+.|.++.          ...+.+..+..||.       +||||||
T Consensus        46 ~~GSG~iI~~~G~ILTa---aHvv~~~------~~i~V~~~~----------g~~~~a~~~~~d~~-------~DlAlL~   99 (332)
T 3num_A           46 ASGSGFIVSEDGLIVTN---AHVVTNK------HRVKVELKN----------GATYEAKIKDVDEK-------ADIALIK   99 (332)
T ss_dssp             EEEEEEEEETTTEEEEC---TTTCCTT------SEEEEEETT----------SCEEEEEEEEEETT-------TTEEEEE
T ss_pred             eeEEEEEEeCCCEEEEC---hHHcCCC------CEEEEEECC----------CCEEEEEEEEecCC-------CCeEEEE
Confidence            47999999998 99999   9999652      567777652          23455666667764       6999999


Q ss_pred             ecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCcc
Q psy15063        207 LDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVT  242 (417)
Q Consensus       207 L~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~  242 (417)
                      |+.+.    .+.++.|+.......++.+++.||+..
T Consensus       100 l~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~g  131 (332)
T 3num_A          100 IDHQG----KLPVLLLGRSSELRPGEFVVAIGSPFS  131 (332)
T ss_dssp             ECCSS----CCCCCCBCCTTSCCTTCEEEEECC---
T ss_pred             EcCCC----CCceeeecCcccCCCCCEEEEEECCCC
Confidence            99873    456788876543337999999999864

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.32  E-value=8.3e-13  Score=111.90  Aligned_cols=45  Identities=53%  Similarity=1.021  Sum_probs=41.4

Q ss_pred             eecccccccccCCcEEEEcc-CCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~-~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +++|.++.+++|||+++|+. .+.++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~   46 (131)
T 1yph_C            1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT   46 (131)
T ss_dssp             CBTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGCCC
T ss_pred             CCCCEECCCCCcCcEEEEEeCCCCEEEEEEEeeCCEEEECHHHCCC
Confidence            57999999999999999987 5679999999999999999999854

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.31  E-value=2.3e-11  Score=118.52  Aligned_cols=170  Identities=14%  Similarity=0.064  Sum_probs=107.5

Q ss_pred             cccceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        127 QDVCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       127 ~~~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      ...|+|.||+++ ||||+   |||+.+.      ..+.|.++..          +.+...-+.    |+   ..+|||||
T Consensus        41 ~~~gsG~iI~~~G~IlT~---aHvv~~~------~~i~V~~~~g----------~~~~a~v~~----~d---~~~DlAll   94 (318)
T 1te0_A           41 RTLGSGVIMDQRGYIITN---KHVINDA------DQIIVALQDG----------RVFEALLVG----SD---SLTDLAVL   94 (318)
T ss_dssp             EEEEEEEECSTTCEEEEE---HHHHTTC------SEEEEECTTS----------CEEEEEEEE----EE---TTTTEEEE
T ss_pred             CccEEEEEEeCCCEEEEC---HHHcCCC------CEEEEEeCCC----------CEEEEEEEE----eC---CCceEEEE
Confidence            368999999998 99999   9999653      4567776531          222232222    22   25899999


Q ss_pred             EecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC
Q psy15063        206 QLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE  285 (417)
Q Consensus       206 kL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~  285 (417)
                      |++.+    ..+.|++|+.......++.+++.||.....      ..   +...+++.... ..+.......+||+.   
T Consensus        95 k~~~~----~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~------~~---~~~g~vs~~~~-~~~~~~~~~~~i~~d---  157 (318)
T 1te0_A           95 IIKAT----GGLPTIPINARRVPHIGDVVLAIGNPYNLG------QT---ITQGIISATGR-IGLNPTGRQNFLQTD---  157 (318)
T ss_dssp             ECCCS----SCCCCCCCCTTCCCCTTCEEEEECCCSSSS------CC---EEEEEEEECCC-CCCCTTCSCCSEEES---
T ss_pred             EEeCC----CCCceEEeeCccCCCCCCEEEEEEcCCCCC------Cc---EEeeEEecccc-cccCCCCcCCEEEEC---
Confidence            99987    356788998643333899999999754221      11   22223322211 111112345688873   


Q ss_pred             CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        286 TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       286 ~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                       ...|.|                                                                      +||
T Consensus       158 -~~~~~G----------------------------------------------------------------------~SG  166 (318)
T 1te0_A          158 -ASINHG----------------------------------------------------------------------NSG  166 (318)
T ss_dssp             -SCCCTT----------------------------------------------------------------------TTT
T ss_pred             -CCCCCC----------------------------------------------------------------------CCc
Confidence             467888                                                                      999


Q ss_pred             CceEEeeCCeEEEEeEEEEcCCCcc--ccCCCCeEEEecccchhHHhhhh
Q psy15063        366 GPLTFEQDGYHVLAGIVSYGVTGCA--IMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       366 gPL~~~~~g~~~l~GI~S~g~~~C~--~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                      |||+.. +|+  |+||++++.....  .....-+.+..+....+|+++.+
T Consensus       167 GPl~~~-~G~--vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~  213 (318)
T 1te0_A          167 GALVNS-LGE--LMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLI  213 (318)
T ss_dssp             SEEECT-TCC--EEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHH
T ss_pred             CceECC-CCe--EEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHH
Confidence            999964 676  9999999832110  00223467788888888877654

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=99.30  E-value=1e-12  Score=124.97  Aligned_cols=52  Identities=35%  Similarity=0.692  Sum_probs=41.6

Q ss_pred             ccCCcceeecccccccccCCcEEEEccCC-----eeeeeeEEecCceeeeccccccC
Q psy15063        313 YRQPRRRIILGGEADIGEFPWQVAIALDG-----MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       313 ~~~~~~~~~~G~~~~~~~~p~~~~~~~~~-----~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ..++..||++|.+|.+++|||||+|+...     .|+||||||+++||||||||+..
T Consensus        17 ~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHCv~~   73 (276)
T 2vnt_A           17 TLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFID   73 (276)
T ss_dssp             CC-----CCSSEECCGGGSTTEEEEEEECSSSCEEEEEEEEEEETTEEEECGGGTTT
T ss_pred             CCCCCCcEECCEECCCCCCCcEEEEEEecCCCcceeEEEEEEeeCCEEEECcccccC
Confidence            44556799999999999999999997532     48999999999999999999843

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.26  E-value=2.8e-11  Score=109.04  Aligned_cols=161  Identities=14%  Similarity=0.108  Sum_probs=99.9

Q ss_pred             ccce-EEEeeC---CeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE-eeeEEEeCCCCCCCCCCCCe
Q psy15063        128 DVCA-VRIEFE---KVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR-GVRRVLFHSHFHPFVLSNDI  202 (417)
Q Consensus       128 ~~C~-GtLIs~---~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~-~V~~i~iHP~Y~~~~~~nDI  202 (417)
                      ..|+ |.++.+   .+|||+   +||+...      ..  +.++.         ..+.. .+..    .+|    ..+||
T Consensus        12 ~~CT~Gfiv~~~g~~~ilT~---~Hv~~~~------~~--v~~~~---------~~~~~g~~~~----~~~----~~~Di   63 (187)
T 1hpg_A           12 SRCSAAFNVTKGGARYFVTA---GHCTNIS------AN--WSASS---------GGSVVGVREG----TSF----PTNDY   63 (187)
T ss_dssp             EEEECCEEEEETTEEEEEEC---HHHHTTC------SE--EESST---------TCCEEEEEEE----EEC----SBSCE
T ss_pred             CcCcceEEEEECCeeEEEEC---cccCCCC------Ce--EEeCC---------CceeEEEEeC----ccC----CCCCE
Confidence            4687 777776   499999   9999642      22  22221         10110 1111    112    14799


Q ss_pred             EEEEecCCcCCCCceee-----eeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCC
Q psy15063        203 ALLQLDRPVPLTGTIQP-----VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIG  277 (417)
Q Consensus       203 ALLkL~~pv~~s~~v~P-----icLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~  277 (417)
                      |||||+.++.+.+.+..     +.+........++.+...||....     ....++.+..++.        +.......
T Consensus        64 Alikl~~~~~~~~~v~~~~g~~~~i~~~~~~~~G~~v~~~G~~~g~-----t~G~v~~~~~~v~--------~~~~~~~~  130 (187)
T 1hpg_A           64 GIVRYTDGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKV-----TSGTVTAVNVTVN--------YGDGPVYN  130 (187)
T ss_dssp             EEEEECSSCCCCSEEECSSSCEEECCEECCCCTTCEEEEEETTTEE-----EEEEEEEEEEEEE--------ETTEEEEE
T ss_pred             EEEEeCCCCCcCceEEecCCceeeeccccCCCCCCEEEEEEcCCCE-----eEEEEEEeEEEEE--------eCCCeEee
Confidence            99999988766554432     444333222379999999997421     1123333433331        11112346


Q ss_pred             eEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeee
Q psy15063        278 MLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLT  357 (417)
Q Consensus       278 ~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLt  357 (417)
                      |+|+.    ...|.|                                                                 
T Consensus       131 ~i~t~----~~~~~G-----------------------------------------------------------------  141 (187)
T 1hpg_A          131 MVRTT----ACSAGG-----------------------------------------------------------------  141 (187)
T ss_dssp             EEEEC----CCCCTT-----------------------------------------------------------------
T ss_pred             eEEec----cccCCC-----------------------------------------------------------------
Confidence            89984    457788                                                                 


Q ss_pred             ccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        358 AAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       358 aAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                           ||||||++  ++  .++||+|++...|.  ...|++|++|..+++.+
T Consensus       142 -----dSGgpl~~--~~--~~vGi~s~~~~~~~--~~~~~~~~~i~~~~~~l  182 (187)
T 1hpg_A          142 -----DSGGAHFA--GS--VALGIHSGSSGCSG--TAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             -----CTTCEEEE--TT--EEEEEEEEESCCBT--TBCCCEEEEHHHHHHHH
T ss_pred             -----CCCCeEEE--CC--EEEEEEEeeCCCCC--CCCceEEEEHHHHHHHc
Confidence                 99999997  45  49999999954587  57899999999887765

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=99.24  E-value=1.8e-12  Score=127.90  Aligned_cols=50  Identities=32%  Similarity=0.568  Sum_probs=44.0

Q ss_pred             CcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       316 ~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      ...||++|.+|.+++|||||+|+..+.++||||||+++||||||||+..+
T Consensus        99 ~~~RIvGG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~  148 (347)
T 4f4o_C           99 QVQRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLG  148 (347)
T ss_dssp             ----CCSCCBCCSCCCTTCEEEECTTCCEEECCBCSSSEEEECHHHHTTT
T ss_pred             CCCeEECCEECCCCCCCcEEEEEeCCCEEEEEEEEcCCEEEeCcccccCC
Confidence            35799999999999999999999999999999999999999999999544

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=99.22  E-value=5.1e-12  Score=117.83  Aligned_cols=46  Identities=39%  Similarity=0.691  Sum_probs=43.7

Q ss_pred             eeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       319 ~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ||++|.++.+++|||+|+|+.++.++||||||+++||||||||+..
T Consensus         2 rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~   47 (240)
T 1mza_A            2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYR   47 (240)
T ss_dssp             CCCCCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCT
T ss_pred             ceECCEECCCCCCCeEEEEeeCCceEEEEEEecCCEEEECHHhCCC
Confidence            7999999999999999999988899999999999999999999853

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=99.21  E-value=1.3e-10  Score=108.99  Aligned_cols=168  Identities=14%  Similarity=0.030  Sum_probs=102.5

Q ss_pred             ccceEEEeeCC--eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        128 DVCAVRIEFEK--VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       128 ~~C~GtLIs~~--~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      ..++|.||+++  ||||+   |||+.+.      ..+.|.+..          ...+..+-+..+|       .+|||||
T Consensus        63 ~~GSGfiI~~~~G~IlTn---aHvv~~a------~~i~V~~~d----------g~~~~a~vv~~d~-------~~DlAlL  116 (245)
T 3sti_A           63 GLGSGVIINASKGYVLTN---NHVINQA------QKISIQLND----------GREFDAKLIGSDD-------QSDIALL  116 (245)
T ss_dssp             -CCEEEEEETTTTEEEEC---GGGC----------CEEEECTT----------SCEEEEEEEEEET-------TTTEEEE
T ss_pred             ceEEEEEEeCCCCEEEEc---HHHhCCC------CEEEEEECC----------CCEEEEEEEEecC-------CCCEEEE
Confidence            48999999998  99999   9999753      567777642          2334455555555       3699999


Q ss_pred             EecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC
Q psy15063        206 QLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE  285 (417)
Q Consensus       206 kL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~  285 (417)
                      ||+.+.    .+.++.|........|+.+++.||.....      .   .+..-+++...+.. ........++|..   
T Consensus       117 kv~~~~----~~~~~~l~~s~~~~~G~~v~aiG~P~g~~------~---~vt~G~vs~~~~~~-~~~~~~~~~i~td---  179 (245)
T 3sti_A          117 QIQNPS----KLTQIAIADSDKLRVGDFAVAVGNPFGLG------Q---TATSGIVSALGRSG-LNLEGLENFIQTD---  179 (245)
T ss_dssp             EESSCC----SCCCCCBCCGGGCCTTBEEEEEECGGGSC------C---EEEEEEEEECSSCS-SCCTTCSSCEEES---
T ss_pred             EeccCC----CCceeeecCcCCCCCCCEEEEEECCCCCC------C---cEEeeEEeeecccc-cCCCCccCEEEEc---
Confidence            998753    35677777543323799999999864321      1   12222333222221 1112234567763   


Q ss_pred             CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        286 TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       286 ~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                       ...|.|                                                                      +||
T Consensus       180 -a~i~~G----------------------------------------------------------------------~SG  188 (245)
T 3sti_A          180 -ASINRG----------------------------------------------------------------------NSG  188 (245)
T ss_dssp             -SCCCTT----------------------------------------------------------------------TTT
T ss_pred             -CCcCCC----------------------------------------------------------------------cch
Confidence             356778                                                                      999


Q ss_pred             CceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhh
Q psy15063        366 GPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       366 gPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                      |||+.. +|+  |+||.|+.. ...-....-+....+...++++++.+
T Consensus       189 GPLvn~-~G~--vVGI~s~~~-~~~~~~~g~~faIP~~~~~~~~~~l~  232 (245)
T 3sti_A          189 GALLNL-NGE--LIGINTAIL-APGGGSVGIGFAIPSNMARTLAQQLI  232 (245)
T ss_dssp             SEEECT-TSC--EEEEEECCC-------CCCEEEEEHHHHHHHHHHHH
T ss_pred             hHeecC-CCe--EEEEEEeEE-CCCCCcceEEEEEeHHHHHHHHHHHH
Confidence            999943 677  999999973 22101123456677777778877654

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=99.18  E-value=1e-11  Score=115.58  Aligned_cols=45  Identities=47%  Similarity=0.813  Sum_probs=42.4

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+..+.++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~   45 (237)
T 2zch_P            1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRN   45 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEESSSSEEEEEEEEETTEEEECGGGCCS
T ss_pred             CCCCEECCCCCCCCEEEEeeCCCeEEEEEEecCCEEEEcHHhcCC
Confidence            579999999999999999988899999999999999999999964

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=99.18  E-value=7.2e-12  Score=116.89  Aligned_cols=46  Identities=35%  Similarity=0.585  Sum_probs=32.9

Q ss_pred             ceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        318 RRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       318 ~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      +|+++|.++..++|||+|+|+..+.++||||||+++||||||||+.
T Consensus         2 arIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~   47 (240)
T 1sgf_A            2 APPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYN   47 (240)
T ss_dssp             -----------CCCTTEEEEECTTSCCEEEEECSSSEEEECGGGCC
T ss_pred             CcccCCeECCCCCcCCEEEEEeCCCeEEEEEEecCCEEEECHHhCC
Confidence            6899999999999999999966578999999999999999999996

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=99.18  E-value=1.2e-11  Score=115.13  Aligned_cols=44  Identities=45%  Similarity=0.778  Sum_probs=41.9

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|.+++|||+|+|+..+.++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~   44 (238)
T 1spj_A            1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCIS   44 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCcEEEEEeCCCeeEEEEEecCCEEEEcHHhCC
Confidence            57899999999999999998889999999999999999999995

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=99.18  E-value=1.6e-11  Score=113.55  Aligned_cols=47  Identities=38%  Similarity=0.793  Sum_probs=42.3

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      |++|.++.+++|||+++|+.++.++|+||||+++||||||||+....
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~   47 (228)
T 2xw9_A            1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAA   47 (228)
T ss_dssp             CBCC-CCCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCT
T ss_pred             CCCCeECCCCCCCcEEEEEECCCeEEEEEEEeCCEEEEcHHhCCCCC
Confidence            57899999999999999999889999999999999999999996443

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=99.18  E-value=1.2e-11  Score=114.23  Aligned_cols=44  Identities=39%  Similarity=0.848  Sum_probs=41.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++.+++|||+|+|+.++.++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~   44 (223)
T 2bdg_A            1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQ   44 (223)
T ss_dssp             CBTCEECCTTSSTTEEEEECSSCEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCcEEEEeeCCCEEEEEEEecCCEEEEhHHhCC
Confidence            57899999999999999998888999999999999999999985

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=99.18  E-value=1.2e-11  Score=115.08  Aligned_cols=44  Identities=41%  Similarity=0.806  Sum_probs=41.9

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|.+++|||+|+|+.++.++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~   44 (237)
T 1ao5_A            1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYV   44 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCC
T ss_pred             CCCCeECCCCCcCCEEEEeeCCCeEEEEEEeeCCEEEECHHHCC
Confidence            57899999999999999998889999999999999999999995

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=99.17  E-value=2.6e-11  Score=109.33  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=35.0

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                      ||||||++  +++  ++||+|++...|.  ...|++|++|..+++|.
T Consensus       136 DSGgpl~~--~~~--~vGi~s~~~~~c~--~~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          136 DSGGSLLA--GNQ--AQGVTSGGSGNCR--TGGTTFFQPVNPILQAY  176 (189)
T ss_dssp             CTTCEEEE--TTE--EEEEEEEEEEETT--TEEEEEEEEHHHHHHHH
T ss_pred             CccCeEEE--CCE--EEEEEeecCCCCC--CCCcEEEEEHHHHHHHC
Confidence            99999997  676  9999999933477  55799999999999987

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=99.17  E-value=9.1e-12  Score=114.85  Aligned_cols=45  Identities=42%  Similarity=0.851  Sum_probs=42.4

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+.++.++|+||||+++||||||||++.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~   45 (222)
T 1eq9_A            1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDG   45 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTT
T ss_pred             CCCCEECCCCCcceEEEEEeCCCeEEEEEEeeCCEEEEhhhcCCC
Confidence            578999999999999999988899999999999999999999954

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=99.17  E-value=1.4e-11  Score=113.90  Aligned_cols=44  Identities=41%  Similarity=0.732  Sum_probs=41.7

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++.+++|||+|+|+.++.++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLI~~~~VLTAAHC~~   44 (225)
T 1npm_A            1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKK   44 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCcCcEEEEeeCCceEEEEEEECCCEEEEhHHcCC
Confidence            57899999999999999998889999999999999999999985

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=99.17  E-value=1.4e-11  Score=114.64  Aligned_cols=44  Identities=50%  Similarity=0.876  Sum_probs=41.7

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|.+++|||+|+|+.++.++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~   44 (237)
T 1gvz_A            1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMS   44 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCeEEEEeeCCceEEEeEEeeCCEEEEcHHhCC
Confidence            57899999999999999998888999999999999999999985

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=114.18  Aligned_cols=45  Identities=42%  Similarity=0.913  Sum_probs=42.6

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+|+|+.++.++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~   45 (232)
T 2oq5_A            1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTT   45 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGSS
T ss_pred             CCCCEECCCCCCCeeEEEEeCCCeeEEEEEEcCCEEEECHHHcCC
Confidence            578999999999999999998999999999999999999999964

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=99.16  E-value=1.7e-11  Score=113.80  Aligned_cols=50  Identities=44%  Similarity=0.894  Sum_probs=44.9

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceE
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT  369 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~  369 (417)
                      +++|.+|.+++|||+|+|+..+.++|+||||+++||||||||+.....+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~   50 (235)
T 2wph_S            1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT   50 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCCTTSCCE
T ss_pred             CCCCEECCCCCCCeEEEEccCCCeeEEEEEEeCCEEEECHHHCcCCCCEE
Confidence            57899999999999999988888999999999999999999997655444

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=99.16  E-value=1.5e-11  Score=115.54  Aligned_cols=46  Identities=41%  Similarity=0.803  Sum_probs=42.9

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.+|..++|||+|+|+.++.++||||||+++||||||||+...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~   46 (254)
T 2bz6_H            1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKI   46 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTTC
T ss_pred             CCCCEECCCCCcCCEEEEEeCCCcEEEEEEecCCEEEECHHHcCCC
Confidence            5789999999999999999888999999999999999999999653

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=99.16  E-value=1.7e-11  Score=113.33  Aligned_cols=45  Identities=44%  Similarity=0.848  Sum_probs=42.4

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+.++.++||||||+++||||||||++.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~   45 (226)
T 1azz_A            1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDG   45 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTT
T ss_pred             CCCCEECCCCCcCCEEEEEECCcEEEEEEEecCCEEEEhHHhcCC
Confidence            578999999999999999988889999999999999999999964

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=99.16  E-value=1.7e-11  Score=113.12  Aligned_cols=44  Identities=41%  Similarity=0.814  Sum_probs=41.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      +++|.+|.+++|||+|+|+.++.++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~   44 (223)
T 1lo6_A            1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKK   44 (223)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCCEEEEecCCCEEEEeEEecCCEEEECccCCC
Confidence            57899999999999999998889999999999999999999986

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=99.16  E-value=1.7e-11  Score=117.73  Aligned_cols=48  Identities=42%  Similarity=0.866  Sum_probs=41.3

Q ss_pred             CcceeecccccccccCCcEEEEccC--CeeeeeeEEecCceeeecccccc
Q psy15063        316 PRRRIILGGEADIGEFPWQVAIALD--GMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       316 ~~~~~~~G~~~~~~~~p~~~~~~~~--~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      ...||++|.+|..++|||+|+|+..  +.++||||||+++||||||||+.
T Consensus        27 ~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGsLIs~~~VLTAAHC~~   76 (289)
T 2bdy_A           27 IDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL   76 (289)
T ss_dssp             C---CBSCEECCTTSCTTEEEEEETTTTEEEEEEEECSSSEEEECGGGTE
T ss_pred             cCCeEECCEECCCCCCCCeEEEEECCCCCEEEEEEEecCCEEEEcHHhcc
Confidence            3579999999999999999999653  57999999999999999999984

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=99.16  E-value=1.5e-11  Score=112.92  Aligned_cols=46  Identities=37%  Similarity=0.756  Sum_probs=42.9

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.++.+++|||+++|+.++.++|+||||+++||||||||+...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~   46 (218)
T 2z7f_E            1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANV   46 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTS
T ss_pred             CCCCEECCCCccCcEEEEEeCCCcEEEEEEccCCEEEEcHHhcCCC
Confidence            5789999999999999999989999999999999999999999654

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=99.15  E-value=1.6e-11  Score=113.34  Aligned_cols=45  Identities=49%  Similarity=0.874  Sum_probs=42.5

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+.++.++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~   45 (224)
T 1pq7_A            1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSG   45 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTT
T ss_pred             CCCCEECCCCCcCeEEEEEECCCeEEEEEEecCCEEEEcHHccCC
Confidence            578999999999999999988899999999999999999999964

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=99.15  E-value=1.8e-11  Score=114.28  Aligned_cols=46  Identities=37%  Similarity=0.671  Sum_probs=42.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.+|.+++|||+|+|+.++.++||||||+++||||||||+...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~   46 (240)
T 2zgc_A            1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQR   46 (240)
T ss_dssp             CBTCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGCSC
T ss_pred             CCCCEECCCCCcCcEEEEEeCCCeEEEEEEEcCCEEEEcHHhcCCC
Confidence            5789999999999999999888999999999999999999999643

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=99.15  E-value=2e-11  Score=112.72  Aligned_cols=45  Identities=42%  Similarity=0.815  Sum_probs=41.4

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++..++|||+++|+..+.++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~   45 (225)
T 1a7s_A            1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQS   45 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC--
T ss_pred             CCCCEECCCCCCCcEEEEecCCCcEEEEEEeeCCEEEEchhccCC
Confidence            578999999999999999998999999999999999999999964

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=99.15  E-value=1.7e-11  Score=113.87  Aligned_cols=44  Identities=43%  Similarity=0.713  Sum_probs=41.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++.+++|||+|+|+.++.++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~   44 (234)
T 1orf_A            1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNL   44 (234)
T ss_dssp             CBSCEECCTTSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCC
T ss_pred             CCCCEECCCCCCCeEEEEccCCceEEEEEEeeCCEEEEchhcCC
Confidence            57899999999999999998889999999999999999999985

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=99.15  E-value=1.7e-11  Score=114.88  Aligned_cols=48  Identities=44%  Similarity=0.852  Sum_probs=43.8

Q ss_pred             cceeecccccccccCCcEEEEcc-CCeeeeeeEEecCceeeeccccccC
Q psy15063        317 RRRIILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~-~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ..|+++|.+|.+++|||+|+|+. .+.++||||||+++||||||||+..
T Consensus        15 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~   63 (247)
T 1ddj_A           15 PGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK   63 (247)
T ss_dssp             CTTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGTT
T ss_pred             CCCcCCCEECCCCCCCcEEEEEcCCCCeEEEEEEeeCCEEEEcHHHcCC
Confidence            35899999999999999999976 4679999999999999999999954

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=99.15  E-value=3.3e-11  Score=111.55  Aligned_cols=46  Identities=41%  Similarity=0.837  Sum_probs=41.6

Q ss_pred             eecccccccccCCcEEEEccC-CeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~-~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.++.+++|||+|+|+.. +.++||||||+++||||||||+...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~   47 (228)
T 1fxy_A            1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQA   47 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTSC
T ss_pred             CCCCEECCCCCcCcEEEEEcCCCCeeEEEEEeeCCEEEECHHHCCCC
Confidence            578999999999999999775 6789999999999999999999643

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=99.15  E-value=1.9e-11  Score=115.02  Aligned_cols=45  Identities=47%  Similarity=0.988  Sum_probs=42.4

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|..++|||+|+|+..+.++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAhC~~~   45 (261)
T 3gyl_B            1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPS   45 (261)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGSCT
T ss_pred             CCCCcCCCCCCCCcEEEEeeCCceEEEEEEEcCCEEEECHHHCCC
Confidence            578999999999999999999999999999999999999999953

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=99.14  E-value=1.5e-11  Score=113.95  Aligned_cols=44  Identities=34%  Similarity=0.875  Sum_probs=42.0

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++.+++|||+|+|+.++.++|+||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~   44 (235)
T 4dgj_A            1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVY   44 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECHHHHT
T ss_pred             CCCCccCCCCCCCcEEEEeeCCCeEEEEEEeeCCEEEECHHhcC
Confidence            57899999999999999999999999999999999999999984

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=99.14  E-value=3.3e-11  Score=113.24  Aligned_cols=51  Identities=35%  Similarity=0.647  Sum_probs=44.2

Q ss_pred             cceeecccccccccCCcEEEEcc----CCeeeeeeEEecCceeeeccccccCCCc
Q psy15063        317 RRRIILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIMTGGP  367 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~dsGgP  367 (417)
                      ..|+++|.+|.+++|||+|+|+.    ...++||||||+++||||||||+.....
T Consensus        11 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~   65 (251)
T 1pyt_D           11 SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLT   65 (251)
T ss_dssp             SSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTCC
T ss_pred             CCccCCCEECCCCCCCceEEEEEEcCCCcceEEEeEEecCCEEEECHHHhCCCce
Confidence            46999999999999999999964    2468999999999999999999964333

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=99.14  E-value=2.1e-11  Score=116.27  Aligned_cols=49  Identities=37%  Similarity=0.833  Sum_probs=43.3

Q ss_pred             CcceeecccccccccCCcEEEEccC-----CeeeeeeEEecCceeeeccccccC
Q psy15063        316 PRRRIILGGEADIGEFPWQVAIALD-----GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       316 ~~~~~~~G~~~~~~~~p~~~~~~~~-----~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ...|+++|.+|.+++|||+|+|+..     ..++||||||+++||||||||+..
T Consensus        19 ~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~   72 (278)
T 2olg_A           19 EADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAG   72 (278)
T ss_dssp             CCCCSCCSSBCCTTSSTTEEEEEEECTTCCEEEEEEEEECSSSEEEECGGGTST
T ss_pred             CCCceECCEECCCCCCCceEEEEEecCCCCcceeEEEEEEeCCEEEEhHHhCCC
Confidence            3569999999999999999999653     268999999999999999999853

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=99.14  E-value=1.3e-11  Score=114.19  Aligned_cols=44  Identities=45%  Similarity=0.899  Sum_probs=42.0

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++..++|||+|+|+..+.++|+||||+++||||||||++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~   44 (235)
T 3h7t_A            1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVD   44 (235)
T ss_dssp             CBTCEECCTTTSTTEEEEEETTSCCEEEEESSSSEEEECHHHHT
T ss_pred             CCCCEECCCCCCCcEEEEecCCCceEeEEEeeCCEEEECHHHCC
Confidence            57899999999999999999899999999999999999999995

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=99.13  E-value=2.5e-11  Score=112.28  Aligned_cols=44  Identities=41%  Similarity=0.862  Sum_probs=40.8

Q ss_pred             eecccccccccCCcEEEEccC-CeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~-~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|.+++|||+|+|+.. +.++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~   45 (227)
T 2psx_A            1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRK   45 (227)
T ss_dssp             CBTCEECCTTSCTTEEEEEETTTEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCCEEEEEecCCCceEEEEEEcCCEEEEhHHcCC
Confidence            578999999999999999765 68999999999999999999985

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=99.13  E-value=2.5e-11  Score=112.36  Aligned_cols=44  Identities=48%  Similarity=0.702  Sum_probs=41.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++..++|||+++|+..+.++|+||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~   44 (234)
T 3s69_A            1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDN   44 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEECSSCEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCccCCCCCCceEEEEeeCCCeEEeEEEeeCCEEEEchhhCC
Confidence            57899999999999999999899999999999999999999984

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=99.13  E-value=2.6e-11  Score=113.52  Aligned_cols=47  Identities=53%  Similarity=1.009  Sum_probs=42.0

Q ss_pred             ceeecccccccccCCcEEEEcc-CCeeeeeeEEecCceeeeccccccC
Q psy15063        318 RRIILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       318 ~~~~~G~~~~~~~~p~~~~~~~-~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      .|+++|.+|.+++|||+|+|+. .+.++||||||+++||||||||+..
T Consensus        14 ~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~   61 (245)
T 1t8o_A           14 SRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT   61 (245)
T ss_dssp             --CBTCEECCTTSSTTEEEEECTTCCEEEEEEEEETTEEEECGGGCCC
T ss_pred             CceECCEECCCCCCCceEEEEcCCCCeEEEEEEeeCCEEEEcHHhCcC
Confidence            5899999999999999999976 5678999999999999999999854

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=99.13  E-value=3.9e-11  Score=111.91  Aligned_cols=49  Identities=41%  Similarity=0.819  Sum_probs=43.0

Q ss_pred             eecccccccccCCcEEEEcc-CCeeeeeeEEecCceeeeccccccCCCce
Q psy15063        320 IILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIMTGGPL  368 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~-~~~~~Cggsli~~~~vLtaAhC~dsGgPL  368 (417)
                      |++|.++.+++|||+|+|+. ++.++||||||+++||||||||+.....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~   50 (241)
T 2jkh_A            1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRF   50 (241)
T ss_dssp             CBSSEECCTTSSTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSCSSC
T ss_pred             CCCCEECCCCCcCcEEEEEcCCCCcEEEEEEeeCCEEEEcHHHcCCCCcE
Confidence            57899999999999999974 56799999999999999999999654443

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=99.13  E-value=2.9e-11  Score=112.56  Aligned_cols=45  Identities=38%  Similarity=0.854  Sum_probs=41.0

Q ss_pred             eecccccccccCCcEEEEcc---CCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~---~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+.   .+.++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~   48 (238)
T 3bg8_A            1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYG   48 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEECSSSCEEEEEEEEEETTEEEECGGGGTT
T ss_pred             CCCCeECCCCCcCcEEEEEeecCCCcEEEEEEEeeCCEEEECHHHCCC
Confidence            57899999999999999976   4679999999999999999999954

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=99.12  E-value=4.4e-11  Score=112.30  Aligned_cols=50  Identities=36%  Similarity=0.644  Sum_probs=43.4

Q ss_pred             eecccccccccCCcEEEEccC-CeeeeeeEEecCceeeeccccccCCCceE
Q psy15063        320 IILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMTGGPLT  369 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~-~~~~Cggsli~~~~vLtaAhC~dsGgPL~  369 (417)
                      |++|..|..++|||+|+|+.. +.++||||||+++||||||||++....+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLI~~~~VLTAAHC~~~~~~~~   51 (250)
T 1aut_C            1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLL   51 (250)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSSCSCCE
T ss_pred             CCCCEECCCCCCCCEEEEecCCCceEEEEEEeeCCEEEEChHHcCCCCceE
Confidence            578999999999999999864 57899999999999999999997544443

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=99.11  E-value=3.3e-11  Score=120.03  Aligned_cols=48  Identities=48%  Similarity=1.026  Sum_probs=43.1

Q ss_pred             CcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       316 ~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      ...||++|.++.+++|||+|+|+.++.++||||||+++||||||||+.
T Consensus       114 ~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHCv~  161 (372)
T 1z8g_A          114 PVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFP  161 (372)
T ss_dssp             C---CBSCEECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCC
T ss_pred             CCCceECCEECCCCCCCcEEEEEeCCceEEEEEEecCCEEEEChhhcC
Confidence            346999999999999999999999899999999999999999999994

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=99.11  E-value=5.5e-11  Score=110.86  Aligned_cols=49  Identities=33%  Similarity=0.684  Sum_probs=42.3

Q ss_pred             eecccccccccCCcEEEEcc-CC---eeeeeeEEecCceeeeccccccCCCce
Q psy15063        320 IILGGEADIGEFPWQVAIAL-DG---MFFCGGALLNEHFVLTAAHCIMTGGPL  368 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~-~~---~~~Cggsli~~~~vLtaAhC~dsGgPL  368 (417)
                      |++|.+|.+++|||+|+|+. ++   .++||||||+++||||||||+.....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~~~~~   53 (240)
T 1gvk_B            1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTF   53 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCSCCCE
T ss_pred             CCCCeECCCCCcCEEEEEEecCCCccCceEEEEEeeCCEEEECHHHCCCCcce
Confidence            57899999999999999975 33   589999999999999999999654443

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.11  E-value=3.5e-11  Score=111.06  Aligned_cols=43  Identities=40%  Similarity=0.844  Sum_probs=39.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      +++|.+|.+++|||+|+|+ .+.++|+||||+++||||||||++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-~~~~~CgGsLIs~~~VLTAAHC~~   43 (223)
T 3mfj_A            1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYK   43 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCcCCEEEEEE-cCCeEEEEEEecCCEEEEhHHhcC
Confidence            5789999999999999994 567999999999999999999994

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=99.11  E-value=3.2e-11  Score=112.44  Aligned_cols=45  Identities=44%  Similarity=0.925  Sum_probs=40.8

Q ss_pred             eecccccccccCCcEEEEcc---CCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~---~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++..++|||+|+|+.   ++.++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~   48 (241)
T 2any_A            1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDG   48 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGSS
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCCCceEEEEEEecCCEEEECHHHcCC
Confidence            57899999999999999976   4578999999999999999999954

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=99.10  E-value=4.1e-11  Score=110.64  Aligned_cols=44  Identities=52%  Similarity=0.930  Sum_probs=39.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++.+++|||+|+|+.+..++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~   44 (224)
T 2qxi_A            1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKM   44 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCeECCCCCCCCEEEEeeCCCeEEEEEEecCCEEEEhHHcCC
Confidence            57899999999999999976555599999999999999999984

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=99.10  E-value=3.5e-11  Score=115.13  Aligned_cols=47  Identities=38%  Similarity=0.724  Sum_probs=42.0

Q ss_pred             ceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        318 RRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       318 ~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      .|+++|.++..++|||+|+|+.. .++||||||+++||||||||+...
T Consensus        34 ~rIvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~   80 (283)
T 1yc0_A           34 PRIIGGSSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHS   80 (283)
T ss_dssp             --CBSCEECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTC
T ss_pred             CceECCeECCCCCCCeEEEEEcC-CcEEEEEEeeCCEEEECHHHcCCC
Confidence            58999999999999999999875 789999999999999999999654

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=99.10  E-value=3.5e-11  Score=111.44  Aligned_cols=44  Identities=43%  Similarity=0.767  Sum_probs=40.8

Q ss_pred             eecccccccccCCcEEEEccC--CeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALD--GMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~--~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++..++|||+|+|+..  +.++|+||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~   46 (234)
T 3s9c_A            1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDR   46 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCeeCCCCCCCeEEEEEECCCCcEEEeeEEeeCCEEEEchhhcC
Confidence            578999999999999999876  67899999999999999999985

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=99.10  E-value=4.1e-11  Score=111.91  Aligned_cols=45  Identities=40%  Similarity=0.843  Sum_probs=41.4

Q ss_pred             eecccccccccCCcEEEEcc-CCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~-~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+|+|+. ++.++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~   46 (251)
T 3gov_B            1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQ   46 (251)
T ss_dssp             CBTCEECCTTSCTTEEEEEETTCCEEEEEEEETTTEEEECGGGGBC
T ss_pred             CCCCEECCCCCcCeEEEEeccCCCeeEEEEEecCCEEEECHhhccc
Confidence            57899999999999999976 6789999999999999999999954

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=99.10  E-value=4.5e-11  Score=111.72  Aligned_cols=44  Identities=50%  Similarity=1.016  Sum_probs=39.9

Q ss_pred             eecccccccccCCcEEEEcc-CC--eeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIAL-DG--MFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~-~~--~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|..++|||+|+|+. .+  .++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~   47 (245)
T 2f9n_A            1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVG   47 (245)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGC
T ss_pred             CCCCeECCCCCCCcEEEEEEcCCCcceEEEEEEeeCCEEEECHHhCC
Confidence            57899999999999999976 33  6899999999999999999994

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=99.10  E-value=4.2e-11  Score=111.34  Aligned_cols=45  Identities=38%  Similarity=0.880  Sum_probs=40.8

Q ss_pred             eecccccccccCCcEEEEccCC-eeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDG-MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~-~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+|+|+..+ .++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAhC~~~   46 (241)
T 3ncl_A            1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYID   46 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCC
T ss_pred             CCCCeECCCCCCCcEEEEEcCCCceEEEEEEeeCCEEEEcHHhccc
Confidence            5789999999999999997654 69999999999999999999954

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=99.09  E-value=4.4e-11  Score=110.31  Aligned_cols=43  Identities=44%  Similarity=0.784  Sum_probs=39.9

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      +++|.+|..++|||+++|+. +.++|+||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~~~~CgGsLIs~~~VLTAAHC~~   43 (222)
T 1hj8_A            1 IVGGYECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCYK   43 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEES-SSEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCEEEEEEc-CCcEEEeEEecCCEEEECHHhcC
Confidence            57899999999999999974 67999999999999999999996

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=99.09  E-value=5.3e-11  Score=110.96  Aligned_cols=45  Identities=29%  Similarity=0.654  Sum_probs=41.7

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.++.. +|||+|+|+..+.++||||||+++||||||||+...
T Consensus         1 IvgG~~a~~-~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~   45 (240)
T 1si5_H            1 VVNGIPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSR   45 (240)
T ss_dssp             CBSCEECSS-CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSS
T ss_pred             CCCCeeCCC-CCCeEEEEEeCCCeEEEEEEeeCCEEEEhHHhcCCC
Confidence            578999999 999999999888999999999999999999999654

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=99.09  E-value=4.5e-11  Score=110.90  Aligned_cols=45  Identities=47%  Similarity=0.792  Sum_probs=41.2

Q ss_pred             eecccccccccCCcEEEEccC--CeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALD--GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~--~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++..++|||+|+|+..  +.++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~   47 (238)
T 4e7n_A            1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRK   47 (238)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTTCCEEEEEEECSSSEEEECGGGCCS
T ss_pred             CCCCeeCCCCCcCcEEEEEECCCCCEEEEEEEecCCEEEEhHHcCCC
Confidence            578999999999999999775  779999999999999999999853

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=99.09  E-value=3.9e-11  Score=111.10  Aligned_cols=45  Identities=42%  Similarity=0.865  Sum_probs=41.2

Q ss_pred             eecccccccccCCcEEEEcc----CCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+.    .+.++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~   49 (230)
T 2hlc_A            1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD   49 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTT
T ss_pred             CCCCeECCCCCCCcEEEEEEEecCCCCEEEEEEEeeCCEEEECHHHCCC
Confidence            57899999999999999976    5679999999999999999999964

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=99.09  E-value=5.3e-11  Score=110.06  Aligned_cols=45  Identities=44%  Similarity=0.737  Sum_probs=40.1

Q ss_pred             eecccccccccCCcEEEEcc--CC-eeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIAL--DG-MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~--~~-~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+|+|+.  .+ .++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~   48 (227)
T 1euf_A            1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS   48 (227)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSSSEEEEEEEEEETTEEEECGGGCCE
T ss_pred             CCCCeECCCCCcCCEEEEEEeCCCCceEEEEEEeeCCEEEECHHHCCC
Confidence            57899999999999999965  23 68999999999999999999853

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=99.09  E-value=5.1e-11  Score=110.10  Aligned_cols=44  Identities=41%  Similarity=0.640  Sum_probs=39.8

Q ss_pred             eecccccccccCCcEEEEcc--CC-eeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIAL--DG-MFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~--~~-~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|.+++|||+|+|+.  ++ .++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~   47 (227)
T 1iau_A            1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWG   47 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSSCEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCeECCCCCcCcEEEEEEECCCCceEEEEEEEcCCEEEECHHhCC
Confidence            57899999999999999965  34 5899999999999999999985

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.09  E-value=7.3e-11  Score=108.56  Aligned_cols=44  Identities=39%  Similarity=0.836  Sum_probs=40.4

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+++|+ .+.++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-~~~~~C~GtLI~~~~VLTAAhC~~~   44 (223)
T 4i8h_A            1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKS   44 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SSSEEEEEEECSSSEEEECGGGCCS
T ss_pred             CCCCEECCCCCCCeEEEec-CCCcEEEEEEEcCCEEEecHHhCCC
Confidence            5789999999999999998 5568899999999999999999965

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=99.08  E-value=5.2e-11  Score=109.52  Aligned_cols=44  Identities=39%  Similarity=0.582  Sum_probs=39.7

Q ss_pred             eecccccccccCCcEEEEccCC----eeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDG----MFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~----~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++.+++|||+|+|+...    .++|+||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~   48 (224)
T 3rp2_A            1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG   48 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCC
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCcEEEEEeEEeeCCEEEEchhcCC
Confidence            5789999999999999997643    7899999999999999999983

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=99.08  E-value=6.3e-11  Score=108.90  Aligned_cols=46  Identities=41%  Similarity=0.763  Sum_probs=41.0

Q ss_pred             eecccccccccCCcEEEEccC---CeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~---~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.++.+++|||+|+|+..   +.++|+||||+++||||||||+...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~   49 (221)
T 1fuj_A            1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDI   49 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBTTCCCEEEEEEETTEEEECGGGGSSS
T ss_pred             CCCCEECCCCCcCCEEEEEEecCCCCEEEEEEEecCCEEEEchHhcCcC
Confidence            578999999999999999753   4689999999999999999999653

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=99.08  E-value=4.7e-11  Score=110.94  Aligned_cols=46  Identities=43%  Similarity=0.861  Sum_probs=41.8

Q ss_pred             eecccccccccCCcEEEEccCC--eeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~--~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.++.+++|||+|+|+..+  .++|+||||+++||||||||+...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~   48 (238)
T 1ym0_A            1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGE   48 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEEGGGTEEEEEEEEEETTEEEECHHHHTTC
T ss_pred             CCCCEECCCCccCCEEEEEeCCCCceEEEEEEeeCCEEEECHHhCCCC
Confidence            5789999999999999998765  799999999999999999999654

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=99.08  E-value=5.6e-11  Score=109.69  Aligned_cols=45  Identities=40%  Similarity=0.614  Sum_probs=40.1

Q ss_pred             eecccccccccCCcEEEEccC--C-eeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALD--G-MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~--~-~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+|+|+..  + .++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~   48 (224)
T 1cgh_A            1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS   48 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESTTTTSCEEEEEEEETTEEEECGGGCCS
T ss_pred             CCCCEECCCCCCCcEEEEEEECCCCCeEEEEEEeeCCEEEEhHHhCCC
Confidence            578999999999999999752  3 58999999999999999999854

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=99.08  E-value=8.1e-11  Score=109.36  Aligned_cols=49  Identities=31%  Similarity=0.727  Sum_probs=42.2

Q ss_pred             eecccccccccCCcEEEEcc--CCe--eeeeeEEecCceeeeccccccCCCce
Q psy15063        320 IILGGEADIGEFPWQVAIAL--DGM--FFCGGALLNEHFVLTAAHCIMTGGPL  368 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~--~~~--~~Cggsli~~~~vLtaAhC~dsGgPL  368 (417)
                      |++|.+|.+++|||+|+|+.  ++.  ++|+||||+++||||||||++....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~   53 (236)
T 1elt_A            1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTW   53 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSSCCCE
T ss_pred             CCCCEECCCCCCCCEEEEEEecCCceeeEEEEEEEeCCEEEECHHhhCCcCce
Confidence            57899999999999999976  343  89999999999999999999754433

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=99.08  E-value=5.6e-11  Score=111.21  Aligned_cols=45  Identities=38%  Similarity=0.727  Sum_probs=41.1

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|..|..++|||+|+|+.. .++||||||+++||||||||+...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~   45 (248)
T 2r0l_A            1 IIGGSSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHS   45 (248)
T ss_dssp             CBSCEECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTC
T ss_pred             CCCCccCCCCCCCeEEEEEcC-CceEEEEEEcCCEEEECHHHcCCC
Confidence            578999999999999999875 689999999999999999999654

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=99.08  E-value=5.2e-11  Score=110.56  Aligned_cols=42  Identities=40%  Similarity=0.850  Sum_probs=39.2

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|..++|||+|+|+. + ++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~-~~CgGsLIs~~~VLTAAHC~~   42 (235)
T 1ton_A            1 IVGGYKCEKNSQPWQVAVIN-E-YLCGGVLIDPSWVITAAHCYS   42 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES-S-SEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCcCcEEEEcc-C-CeEEEEEecCCEEEEcHHhCC
Confidence            57899999999999999987 3 999999999999999999994

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=99.07  E-value=5e-11  Score=111.72  Aligned_cols=46  Identities=43%  Similarity=0.764  Sum_probs=40.8

Q ss_pred             eecccccccccCCcEEEEcc------CCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIAL------DGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~------~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|..|.+++|||+|+|+.      ...++||||||+++||||||||+...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~   52 (252)
T 1rtf_B            1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQER   52 (252)
T ss_dssp             CBSSEECCGGGSTTEEEEEEEC----CEEEEEEEEECSSSEEEECGGGGTTC
T ss_pred             CCCCeECCCCCcCCEEEEEEecCCCCCCCEEEEEEEEeCCEEEECHHHCCCC
Confidence            57899999999999999974      34689999999999999999999653

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=99.07  E-value=5.7e-11  Score=110.72  Aligned_cols=45  Identities=38%  Similarity=0.791  Sum_probs=39.9

Q ss_pred             eecccccccccCCcEEEEccC---C--eeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALD---G--MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~---~--~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+|+|+..   +  .++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~   50 (247)
T 3mhw_U            1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFID   50 (247)
T ss_dssp             CBSSEECCGGGSTTEEEEEEECTTSCEEEEEEEEEEETTEEEECGGGTTT
T ss_pred             CCCCEECCCCCCCCEEEEEEecCCCccceEEEEEEEeCCEEEEcHHhCcC
Confidence            578999999999999999653   2  68999999999999999999954

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=99.07  E-value=7.2e-11  Score=110.19  Aligned_cols=45  Identities=42%  Similarity=0.914  Sum_probs=40.4

Q ss_pred             eecccccccccCCcEEEEcc--CC--eeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIAL--DG--MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~--~~--~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+.  .+  .++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~   49 (241)
T 1bru_P            1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS   49 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT
T ss_pred             CCCCeECCCCCcCcEEEEEEecCCceeeEEEeEEeeCCEEEEcHHhccc
Confidence            57899999999999999976  33  48999999999999999999973

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=99.06  E-value=5.6e-11  Score=111.52  Aligned_cols=44  Identities=43%  Similarity=0.939  Sum_probs=39.8

Q ss_pred             eecccccccccCCcEEEEccC--CeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALD--GMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~--~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|.+++|||+|+|+..  +.++|+||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~   46 (259)
T 3rm2_H            1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL   46 (259)
T ss_dssp             CBSCEECCTTSSTTEEEEEEETTEEEEEEEEECSSSEEEECGGGTE
T ss_pred             CCCCEECCCCCcCCEEEEEECCCCceEEEEEEEeCCEEEEcHHhCc
Confidence            578999999999999999653  46899999999999999999984

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=99.06  E-value=6.3e-11  Score=109.87  Aligned_cols=44  Identities=36%  Similarity=0.634  Sum_probs=40.1

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++..++|||+++|+. +.++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~~~~CgGsLIs~~~VLTAAHC~~~   44 (231)
T 2aiq_A            1 VIGGDECNINEHRFLALVYA-NGSLCGGTLINQEWVLTARHCDRG   44 (231)
T ss_dssp             CBSCEECCTTSCTTEEEEEE-TTEEEEEEECSSSEEEECGGGCCS
T ss_pred             CCCCeECCCCCCCeEEEEEc-CCCeEEEEEEeCCEEEEcHHcCCC
Confidence            57899999999999999985 458999999999999999999854

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=99.06  E-value=7.6e-11  Score=108.67  Aligned_cols=44  Identities=41%  Similarity=0.646  Sum_probs=39.5

Q ss_pred             eecccccccccCCcEEEEccCC----eeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDG----MFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~----~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++.+++|||+|+|+...    .++|+||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~   48 (226)
T 4ag1_A            1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG   48 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECSSSSCEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCCCcccEEEEEEEeCCEEEECcccCC
Confidence            5789999999999999997532    6899999999999999999983

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=99.05  E-value=9.2e-11  Score=108.09  Aligned_cols=43  Identities=42%  Similarity=0.712  Sum_probs=39.1

Q ss_pred             eecccccccccCCcEEEEcc----CCeeeeeeEEecCceeeeccccc
Q psy15063        320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI  362 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~  362 (417)
                      |++|.++.+++|||+|+|+.    +..++|+||||+++||||||||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~   47 (227)
T 3fzz_A            1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK   47 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSSSCEEEEEEEEEETTEEEECTTCC
T ss_pred             CCCCEECCCCCcCCEEEEEEEeCCCceeEEEEEEEeCCEEEECcccC
Confidence            57899999999999999965    23789999999999999999997

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=99.05  E-value=6.5e-11  Score=119.89  Aligned_cols=47  Identities=43%  Similarity=0.903  Sum_probs=43.4

Q ss_pred             cceeecccccccccCCcEEEEccC--CeeeeeeEEecCceeeecccccc
Q psy15063        317 RRRIILGGEADIGEFPWQVAIALD--GMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~~--~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      ..||++|..|.+++|||+|+|+..  +.++||||||+++||||||||+.
T Consensus       163 ~~RIvgG~~a~~g~~Pw~v~l~~~~~~~~~CGGsLIs~~~VLTAAHCv~  211 (424)
T 3nxp_A          163 DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL  211 (424)
T ss_dssp             SSCCCCCEECCTTSCTTEEEEEETTTTEEEEEEEESSSSEEEECHHHHE
T ss_pred             CCeeECCEECCCCCCCCEEEEeecCCCCccceeEEEcCCEEEEhHHhcC
Confidence            569999999999999999999764  57999999999999999999984

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=99.05  E-value=7e-11  Score=113.58  Aligned_cols=45  Identities=44%  Similarity=0.940  Sum_probs=40.0

Q ss_pred             eecccccccccCCcEEEEcc----CC--eeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIAL----DG--MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~----~~--~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|..++|||+|+|+.    ++  .++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~   51 (290)
T 1fiw_A            1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRI   51 (290)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTTTEEEEEEEEEEEETTEEEECGGGGSS
T ss_pred             CCCCEECCCCCCCcEEEEEEeccCCCccceEEEEEEeeCCEEEECHHhCCC
Confidence            57999999999999999964    22  58999999999999999999954

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=99.05  E-value=6.7e-11  Score=110.20  Aligned_cols=46  Identities=39%  Similarity=0.731  Sum_probs=40.8

Q ss_pred             eecccccccccCCcEEEEccC-C--eeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALD-G--MFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~-~--~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.+|.+++|||+|+|+.. +  .++|+||||+++||||||||++..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~   49 (241)
T 1m9u_A            1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGV   49 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESSSEEEEEEEEECSSSEEEECHHHHTTC
T ss_pred             CCCCeECCCCCcCeEEEEEecCCceeeeeEEEEEeCCEEEecHHhCCCC
Confidence            578999999999999999764 3  489999999999999999999653

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=99.05  E-value=6.6e-11  Score=109.88  Aligned_cols=43  Identities=49%  Similarity=0.764  Sum_probs=39.9

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+|+|+  +.++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~--~~~~CgGtLI~~~~VLTAAhC~~~   43 (242)
T 3tvj_B            1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYE   43 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEE--SSEEEEEEEETTTEEEECHHHHST
T ss_pred             CcCCeeCCCCCCCCEEEEe--cCCcEEEEEecCCEEEECHHHCCC
Confidence            5789999999999999998  589999999999999999999953

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=99.03  E-value=1.1e-10  Score=117.50  Aligned_cols=48  Identities=38%  Similarity=0.857  Sum_probs=43.1

Q ss_pred             cceeecccccccccCCcEEEEccC--C--eeeeeeEEecCceeeeccccccC
Q psy15063        317 RRRIILGGEADIGEFPWQVAIALD--G--MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~~--~--~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ..|+++|.+|..++|||||.|+..  +  .++||||||+++||||||||+..
T Consensus       116 ~~rIvgG~~a~~~e~Pw~v~L~~~~~g~~~~~CGGsLIs~~~VLTAAHCv~~  167 (408)
T 2xxl_A          116 SQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHG  167 (408)
T ss_dssp             CCCCCSSCBCCTTSSTTEEEEEEECSSSEEEEEEEEEEETTEEEECGGGTTT
T ss_pred             CCceECCEECCCCCCCcEEEEEeecCCceeEEEEEEEEECCEEEEcHHhcCC
Confidence            579999999999999999999752  2  68999999999999999999954

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=99.03  E-value=1.2e-10  Score=108.36  Aligned_cols=45  Identities=40%  Similarity=0.944  Sum_probs=39.0

Q ss_pred             eecccccccccCCcEEEEccC--Ce--eeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALD--GM--FFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~--~~--~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+..  +.  ++||||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~   49 (237)
T 2f91_A            1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYG   49 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTT
T ss_pred             CCCccCCCCCCCCcEEEEEEecCCCCcceEEEEEeeCCEEEEcHHhCCC
Confidence            578999999999999999763  22  4599999999999999999954

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=99.02  E-value=1.8e-10  Score=112.81  Aligned_cols=46  Identities=48%  Similarity=0.813  Sum_probs=40.2

Q ss_pred             cceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        317 RRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ..||++|..|.+++|||+|.+...  +.||||||+++||||||||+..
T Consensus        87 ~~rIvgG~~a~~~~~Pw~v~l~~~--~~CgGsLIs~~~VLTAAHCv~~  132 (329)
T 1md8_A           87 RQRIIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYP  132 (329)
T ss_dssp             C--CBSCCBCCTTSCTTEEEEESS--SEEEEEEETTTEEEECGGGTSC
T ss_pred             cccccCCEECCCCCCCCeEeeccC--CCcceEEecCCEEEecCCEEEe
Confidence            469999999999999999999753  5799999999999999999963

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=99.02  E-value=1.2e-10  Score=116.72  Aligned_cols=47  Identities=43%  Similarity=0.808  Sum_probs=42.1

Q ss_pred             ceeecc-cccccccCCcEEEEccC--------CeeeeeeEEecCceeeeccccccC
Q psy15063        318 RRIILG-GEADIGEFPWQVAIALD--------GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       318 ~~~~~G-~~~~~~~~p~~~~~~~~--------~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      .|+++| .+|..++|||||+|+..        ..++||||||+++||||||||+..
T Consensus       128 ~rIvgG~~~a~~~e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTAAHCv~~  183 (394)
T 2b9l_A          128 FKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNS  183 (394)
T ss_dssp             CEEESCSSBCCTTSSTTEEEEEECC------CCSEEEEEEEEETTEEEECHHHHGG
T ss_pred             ceeeCCccccCCCCCCcEEEEeeccccccccccceEeeEEEEeCCEEEeccceecC
Confidence            589999 89999999999999753        358999999999999999999954

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=99.02  E-value=1.3e-10  Score=108.19  Aligned_cols=42  Identities=48%  Similarity=0.803  Sum_probs=38.6

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|.+++|||+|+++..  ++||||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~--~~CgGtLIs~~~VLTAAHC~~   42 (242)
T 2qy0_B            1 IIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLY   42 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEESS--SEEEEEEETTTEEEECHHHHS
T ss_pred             CCCCEECCCCCCCcEEEEccC--CCEEEEEEeCCEEEEcHHhcc
Confidence            578999999999999999763  689999999999999999995

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=99.00  E-value=3e-10  Score=105.79  Aligned_cols=45  Identities=40%  Similarity=0.761  Sum_probs=32.4

Q ss_pred             cccccccccCCcEEEEcc--CC--eeeeeeEEecCceeeeccccccCCC
Q psy15063        322 LGGEADIGEFPWQVAIAL--DG--MFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       322 ~G~~~~~~~~p~~~~~~~--~~--~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      +|.+|.+++|||+|+|+.  ++  .++||||||+++||||||||+....
T Consensus         1 gG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAhC~~~~~   49 (240)
T 1fon_A            1 NGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSR   49 (240)
T ss_dssp             --------CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCTTS
T ss_pred             CCccCCcCCcccEEEEEEecCCcEeeEEEEEEeeCCEEEECHHHCCCCC
Confidence            588899999999999976  44  4899999999999999999996543

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=99.00  E-value=1.8e-10  Score=107.00  Aligned_cols=42  Identities=38%  Similarity=0.895  Sum_probs=36.6

Q ss_pred             eecccccccccCCcEEEEccC-CeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~-~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.   +++|||+|+|+.. +.++||||||+++||||||||+..
T Consensus         1 IvgG~---~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~   43 (234)
T 2asu_B            1 VVGGH---PGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSS   43 (234)
T ss_dssp             CBSCE---ECCCTTEEEEECTTSCEEEEEEEEETTEEEEEGGGSSC
T ss_pred             CCCcc---cCCCcceEEeeccCCCEEEEEEEEeCCEEEECHHHcCC
Confidence            35665   6899999999875 789999999999999999999954

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=98.99  E-value=1.2e-10  Score=107.36  Aligned_cols=42  Identities=48%  Similarity=0.858  Sum_probs=38.0

Q ss_pred             cccccccccCCcEEEEccCCe--e-eeeeEEecCceeeecccccc
Q psy15063        322 LGGEADIGEFPWQVAIALDGM--F-FCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       322 ~G~~~~~~~~p~~~~~~~~~~--~-~Cggsli~~~~vLtaAhC~d  363 (417)
                      +|.++.+++|||+|+|+..+.  + +|+||||+++||||||||+.
T Consensus         2 gG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~   46 (228)
T 3h7o_A            2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVF   46 (228)
T ss_dssp             CCEECCGGGSTTEEEEEECGGGCCEEEEEEESSSSEEEECHHHHT
T ss_pred             CCccCCcCCCCeEEEEeecCCCCceEeeeEEeeCCEEEEcHHhcc
Confidence            688999999999999987544  4 99999999999999999995

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=98.98  E-value=1.7e-10  Score=106.17  Aligned_cols=41  Identities=46%  Similarity=0.854  Sum_probs=37.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+    +.|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~----~~CgGtLI~~~~VLTAAHC~~~   41 (224)
T 3beu_A            1 VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSG   41 (224)
T ss_dssp             CBTCEECCTTTSTTEEEET----TTEEEEEEETTEEEECGGGSCS
T ss_pred             CCCCeECCCCCCCEEEEEC----CceeEEEeeCCEEEEChhhcCC
Confidence            5789999999999999996    5799999999999999999964

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.96  E-value=4.6e-09  Score=103.39  Aligned_cols=85  Identities=16%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             ccceEEEeeCC--eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        128 DVCAVRIEFEK--VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       128 ~~C~GtLIs~~--~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      ..++|.||+++  ||||+   |||+.+.      ..+.|.+..          .+.+..+-+..||.       +|||||
T Consensus        63 ~~GSGfiI~~~~G~IlTn---aHVv~~~------~~i~V~~~d----------g~~~~a~vv~~d~~-------~DlAlL  116 (345)
T 3stj_A           63 GLGSGVIINASKGYVLTN---NHVINQA------QKISIQLND----------GREFDAKLIGSDDQ-------SDIALL  116 (345)
T ss_dssp             EEEEEEEEETTTTEEEEC---HHHHTTE------EEEEEECTT----------SCEEEEEEEEEETT-------TTEEEE
T ss_pred             eeEEEEEEECCCCEEEEC---hHHhCCC------CEEEEEeCC----------CcEEEEEEEEEcCC-------CCEEEE
Confidence            48999999998  99999   9999642      566676642          24455666667764       699999


Q ss_pred             EecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCcc
Q psy15063        206 QLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVT  242 (417)
Q Consensus       206 kL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~  242 (417)
                      |++.+-    .+.++.|........|+.+++.||...
T Consensus       117 kv~~~~----~~~~~~l~~s~~~~~G~~V~aiG~p~g  149 (345)
T 3stj_A          117 QIQNPS----KLTQIAIADSDKLRVGDFAVAVGNPFG  149 (345)
T ss_dssp             EESSCC----SCCCCCBCCGGGCCTTBEEEEEECGGG
T ss_pred             EEcccC----CCceEeecCcccCCCCCEEEEEECCCC
Confidence            998653    345677765433237999999999643

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=98.96  E-value=5.8e-10  Score=111.78  Aligned_cols=46  Identities=46%  Similarity=0.790  Sum_probs=41.4

Q ss_pred             cceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        317 RRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ..||++|..|..++|||+|.+...  ..||||||+++||||||||+..
T Consensus       155 ~~rIvgG~~a~~~~~Pw~v~l~~~--~~CgGsLIs~~~VLTAAHC~~~  200 (399)
T 1gpz_A          155 RQQIIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYP  200 (399)
T ss_dssp             SCCCCSCEECCTTSSTTEEEEESS--SEEEEEEETTTEEEECGGGTSC
T ss_pred             CCEEECCEECCCCCCCCEEEECCC--CCeEEEEeCCCEEEeChhcccc
Confidence            469999999999999999998643  4799999999999999999954

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=98.94  E-value=2.5e-10  Score=111.77  Aligned_cols=46  Identities=52%  Similarity=0.840  Sum_probs=39.1

Q ss_pred             cceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        317 RRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      ..||++|..|..++|||+|+|..   ++||||||+++||||||||+...
T Consensus        80 ~~rIvgG~~a~~~~~Pw~v~l~~---~~CgGsLIs~~~VLTAAHC~~~~  125 (333)
T 1elv_A           80 KQRIIGGSDADIKNFPWQVFFDN---PWAGGALINEYWVLTAAHVVEGN  125 (333)
T ss_dssp             ---CBTCEECCGGGSTTEEEEET---TEEEEEEEETTEEEECHHHHTTC
T ss_pred             cceeecCcccCCCCcCeEEEecC---CceeEEEecCCEEEehhheeCCC
Confidence            46999999999999999999952   38999999999999999999543

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=98.94  E-value=4.4e-10  Score=119.20  Aligned_cols=49  Identities=37%  Similarity=0.811  Sum_probs=44.5

Q ss_pred             CcceeecccccccccCCcEEEEccC---CeeeeeeEEecCceeeeccccccC
Q psy15063        316 PRRRIILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       316 ~~~~~~~G~~~~~~~~p~~~~~~~~---~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ...||++|.+|.+++|||+|+|+..   +.++||||||+++||||||||+..
T Consensus       384 ~~~rIvgG~~a~~~~~Pw~v~L~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~  435 (625)
T 2f83_A          384 IKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYG  435 (625)
T ss_dssp             CCSCCCSSSSCCTTSSTTEEEEEECSSSSEEEEEEEECSSSEEEECGGGGSS
T ss_pred             CCCceECCEECCCCCCCeEEEEEEecCCCcEEEEEEEECCCEEEEcHHhCCC
Confidence            4579999999999999999999764   579999999999999999999953

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=98.94  E-value=4.2e-10  Score=107.70  Aligned_cols=47  Identities=38%  Similarity=0.829  Sum_probs=34.8

Q ss_pred             ccccccccCCcEEEEcc-CCeeeeeeEEecCceeeeccccccCCCceE
Q psy15063        323 GGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIMTGGPLT  369 (417)
Q Consensus       323 G~~~~~~~~p~~~~~~~-~~~~~Cggsli~~~~vLtaAhC~dsGgPL~  369 (417)
                      |..+..++|||+|+|+. ++.++||||||+++||||||||+.....+.
T Consensus        56 g~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~  103 (283)
T 3f1s_B           56 KRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNIT  103 (283)
T ss_dssp             -------CCTTEEEEECTTSCEEEEEEEEETTEEEECHHHHTSCSSCE
T ss_pred             CccccccccCCEEEEEecCCCeeeccEEecCCEEEEcHHhcCccCceE
Confidence            89999999999999987 678999999999999999999996544443

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.93  E-value=1.7e-10  Score=120.87  Aligned_cols=50  Identities=42%  Similarity=0.834  Sum_probs=33.8

Q ss_pred             CcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       316 ~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      ...||++|..|.+++|||+|+|+..+.++||||||+++||||||||+...
T Consensus       318 ~~~rIvgG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~  367 (565)
T 2xrc_A          318 RRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRAS  367 (565)
T ss_dssp             --------------CCTTBCEEEESSSCCCCCEEEETTEEEECHHHHTTC
T ss_pred             CCCceECCEECCCCCCCcEEEEecCCceeeeEEEEeCCEEEEChhhcccC
Confidence            35699999999999999999999888899999999999999999999653

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=98.93  E-value=2.7e-10  Score=114.42  Aligned_cols=47  Identities=43%  Similarity=0.619  Sum_probs=42.9

Q ss_pred             CcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       316 ~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ...||++|..|..++|||+|+|+.  .++||||||+++||||||||+..
T Consensus       158 ~~~rIvgG~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHC~~~  204 (403)
T 1zjk_A          158 TGGQIYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYE  204 (403)
T ss_dssp             CSCCCSSCEECCTTSSTTEEEEEE--SCCEEEEEETTTEEEECHHHHGG
T ss_pred             CCccccCCcCCCCCCcCCEeEecc--CCceEEEEecCCEEEEcHHhCCC
Confidence            356999999999999999999987  57899999999999999999954

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=98.89  E-value=3.9e-10  Score=116.46  Aligned_cols=45  Identities=36%  Similarity=0.653  Sum_probs=36.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ..+|.++.+++|||+|+|+..+.++||||||+++||||||||+..
T Consensus       224 ~~~g~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~  268 (509)
T 2odp_A          224 NMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRD  268 (509)
T ss_dssp             CCCTTSCHHHHCTTEEEEEC----CEEEEECSSSEEEECGGGC--
T ss_pred             CCCCCccccCCCCcEEEEEeCCCcEEEEEEEcCCEEEEcHHHcCC
Confidence            457889999999999999988889999999999999999999954

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=98.88  E-value=7.5e-10  Score=119.86  Aligned_cols=48  Identities=44%  Similarity=0.881  Sum_probs=44.1

Q ss_pred             cceeecccccccccCCcEEEEccC-CeeeeeeEEecCceeeeccccccC
Q psy15063        317 RRRIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~~-~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ..||++|..|.+++|||+|+|+.. +.++||||||+++||||||||+..
T Consensus       559 ~~RIvGG~~a~~~~~PW~VsL~~~~~~~~CGGSLIs~~wVLTAAHCv~~  607 (791)
T 4dur_A          559 PGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK  607 (791)
T ss_dssp             CTTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGSS
T ss_pred             CCceECCEECCCCCCCeEEEEEecCCCeEEEEEEEeCCEEEECHHHcCC
Confidence            369999999999999999999764 789999999999999999999954

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.86  E-value=1.2e-09  Score=106.02  Aligned_cols=48  Identities=38%  Similarity=0.792  Sum_probs=41.7

Q ss_pred             cccccccccCCcEEEEcc-CCeeeeeeEEecCceeeeccccccCCCceE
Q psy15063        322 LGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIMTGGPLT  369 (417)
Q Consensus       322 ~G~~~~~~~~p~~~~~~~-~~~~~Cggsli~~~~vLtaAhC~dsGgPL~  369 (417)
                      .|..+..++|||+|+|+. .+.++||||||+++||||||||+.....+.
T Consensus        96 ~G~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~  144 (317)
T 3h5c_B           96 EKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNIT  144 (317)
T ss_dssp             CCSSCCTTCCTTEEEEECSSSCEEEEEEEEETTEEEECHHHHHSCSSCE
T ss_pred             ccccCccCCCCcEEEEeccCCceeeeeEEeeCCEEEEChHhcCcCCceE
Confidence            488999999999999987 678999999999999999999996544443

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=98.80  E-value=2.6e-09  Score=95.92  Aligned_cols=39  Identities=18%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchh
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIR  407 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~  407 (417)
                      ||||||++  +++  ++||+||+...|.  ...+++|++|..+++
T Consensus       139 DSGgpl~~--~~~--~vGi~s~g~~~c~--~~~~~~~~pi~~~l~  177 (186)
T 2pfe_A          139 DSGGPWLT--GSQ--AQGVTSGGTGDCR--SGGITFFQPINPLLS  177 (186)
T ss_dssp             CTTCEEEE--TTE--EEEEEEEEEEETT--TEEEEEEEEHHHHHH
T ss_pred             CccCeEEE--CCE--EEEEEeecCCCCC--CCCcEEEEEHHHHHH
Confidence            99999997  665  8999999944587  556899999987654

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=98.71  E-value=4.1e-09  Score=108.36  Aligned_cols=42  Identities=43%  Similarity=0.727  Sum_probs=36.5

Q ss_pred             ccccccccCCcEEEEcc----CCeeeeeeEEecCceeeeccccccC
Q psy15063        323 GGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       323 G~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +..+.+++|||+|+|+.    .+.++||||||+++||||||||+..
T Consensus       218 ~~~~~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~  263 (497)
T 1rrk_A          218 RKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTV  263 (497)
T ss_dssp             TTCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCT
T ss_pred             CCCCCccccCcEEEEEEEcCCCCCceeEEEEecCCEEEECHHhCCC
Confidence            45678899999999974    3568999999999999999999964

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.71  E-value=2.3e-07  Score=94.05  Aligned_cols=84  Identities=17%  Similarity=0.189  Sum_probs=62.1

Q ss_pred             ccceEEEeeCC--eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        128 DVCAVRIEFEK--VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       128 ~~C~GtLIs~~--~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      ..++|.+|+++  ||||+   |||+.+.      ..+.|.+..          ...+..+-+..||.       +|||||
T Consensus        63 ~~GSGfii~~~~G~IlTn---~Hvv~~a------~~i~V~~~d----------g~~~~a~vv~~d~~-------~DlAll  116 (436)
T 4a8c_A           63 GLGSGVIINASKGYVLTN---NHVINQA------QKISIQLND----------GREFDAKLIGSDDQ-------SDIALL  116 (436)
T ss_pred             eEEEEEEEECCCCEEEEC---HHHhCCC------CEEEEEeCC----------CCEEEEEEEEEcCC-------CCEEEE
Confidence            48999999997  99999   9999753      567777642          23455666666664       699999


Q ss_pred             EecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        206 QLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       206 kL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      |++.+.    .+.++.|........|+.+++.||..
T Consensus       117 kv~~~~----~l~~~~l~~s~~~~~G~~v~aiG~P~  148 (436)
T 4a8c_A          117 QIQNPS----KLTQIAIADSDKLRVGDFAVAVGNPF  148 (436)
T ss_pred             EecCCC----CCceEeccCcccCCCCCEEEEEEcCC
Confidence            997653    45678887554333899999999964

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.61  E-value=3.7e-07  Score=92.92  Aligned_cols=84  Identities=18%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             ccceEEEeeCC--eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        128 DVCAVRIEFEK--VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       128 ~~C~GtLIs~~--~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      ..++|.+|+++  ||||+   |||+.+.      ..+.|.+..          ...+..+-+..||.       +|||||
T Consensus        77 ~~GSGfiI~~~~G~IlTn---~HVv~~a------~~i~V~~~d----------g~~~~a~vv~~d~~-------~DlAlL  130 (451)
T 3pv2_A           77 SIGSGVIIDPNNGVIITN---DHVIRNA------SLITVTLQD----------GRRLKARLIGGDSE-------TDLAVL  130 (451)
T ss_dssp             EEEEEEEEETTTTEEEEC---HHHHTTE------EEEEEECTT----------SCEEECEEEEEETT-------TTEEEE
T ss_pred             eeEEEEEEECCCCEEEEC---hHHhCCC------CEEEEEEcC----------CCEEEEEEEecCcC-------CcEEEE
Confidence            47999999974  99999   9999752      566777642          23455666667764       699999


Q ss_pred             EecCCcCCCCceeeeeCCCCCCccCCCeEEEEE--cCcc
Q psy15063        206 QLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVG--WGVT  242 (417)
Q Consensus       206 kL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~G--WG~~  242 (417)
                      |++.     ..+.++.|........|+.+++.|  ||..
T Consensus       131 kv~~-----~~l~~~~l~~s~~~~~G~~V~aiG~P~G~~  164 (451)
T 3pv2_A          131 KIDA-----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLN  164 (451)
T ss_dssp             ECCC-----SSCCCCCBCCGGGCCTTCEEEEEECCCCC-
T ss_pred             EEcC-----cCCceeEecCcccCCCCCEEEEEECCCCcc
Confidence            9964     345567776543322799999999  6643

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=98.58  E-value=2.4e-08  Score=91.81  Aligned_cols=38  Identities=24%  Similarity=0.509  Sum_probs=32.5

Q ss_pred             ccccCCcEEEEcc---CCeeeeeeEEec---CceeeeccccccC
Q psy15063        327 DIGEFPWQVAIAL---DGMFFCGGALLN---EHFVLTAAHCIMT  364 (417)
Q Consensus       327 ~~~~~p~~~~~~~---~~~~~Cggsli~---~~~vLtaAhC~ds  364 (417)
                      .+++|||+++|+.   .+.++||||||+   ++||||||||+..
T Consensus         2 ~~~~~p~~g~l~~~~~~~~~~CgGslI~s~s~~~VLTAAHC~~~   45 (218)
T 3cp7_A            2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHD   45 (218)
T ss_dssp             -CTTCTTEEEEEEEETTEEEEEEEEEBCCTTSCEEEECGGGTBC
T ss_pred             CCCCCceEEEEEEEcCCCCeEEEEEEEecCCCCEEEEChHhcCc
Confidence            3678999999975   346899999999   9999999999854

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=98.57  E-value=6.3e-08  Score=87.01  Aligned_cols=39  Identities=21%  Similarity=0.376  Sum_probs=31.5

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchh
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIR  407 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~  407 (417)
                      ||||||++  +++  ++||+|++...|.  ...+++|++|..+++
T Consensus       142 DSGgpl~~--~~~--~vGi~s~~~~~~~--~~~~~~~~pi~~~l~  180 (188)
T 2oua_A          142 DSGGSFIS--GTQ--AQGVTSGGSGNCR--TGGTTFYQEVNPMLN  180 (188)
T ss_dssp             CTTCEEEE--TTE--EEEEEEEEEEETT--TEEEEEEEESHHHHH
T ss_pred             CccceEEE--CCE--EEEEEeccCCCCC--CCCceEEEEHHHHHH
Confidence            99999996  675  9999999844587  456899999987654

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=98.52  E-value=3.7e-08  Score=106.18  Aligned_cols=46  Identities=39%  Similarity=0.603  Sum_probs=32.7

Q ss_pred             eeecccccccccCCcEEEEcc----CCeeeeeeEEecCceeeeccccccC
Q psy15063        319 RIILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       319 ~~~~G~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ....|.++.+++|||+|.|..    .+.++||||||+++||||||||+..
T Consensus       456 ~~~~~~~~~~~~~Pw~~~v~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~  505 (741)
T 3hrz_D          456 VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTV  505 (741)
T ss_dssp             CCCC---CCTTTCTTEEEEEECCCC-----EEEEECSSSEEEECGGGCC-
T ss_pred             ccccCCcccccCcCCeEEEEEEeCCCCCCEEEEEEecCCEEEEchhhccc
Confidence            356689999999999888754    3568999999999999999999953

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=98.46  E-value=5.3e-08  Score=88.83  Aligned_cols=42  Identities=26%  Similarity=0.459  Sum_probs=32.8

Q ss_pred             cceeecccccccccCCc--EEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        317 RRRIILGGEADIGEFPW--QVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~--~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ..|+++|.+     +||  ++.+. .+.++|+||||+++||||||||+..
T Consensus         8 ~~rI~~g~~-----~P~~~~~~~~-~~~~~CgGtLIs~~~VLTAAHCv~~   51 (215)
T 1p3c_A            8 RTKVANTRV-----APYNSIAYIT-FGGSSCTGTLIAPNKILTNGHCVYN   51 (215)
T ss_dssp             CEECSCTTS-----TTGGGEEEEE-CSSCEEEEEEEETTEEEECHHHHEE
T ss_pred             CEEecCCCc-----CCCeEEEEEE-cCCceEEEEEEeCCEEEECccEecc
Confidence            456777764     688  33443 5679999999999999999999954

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=98.28  E-value=2.4e-07  Score=86.24  Aligned_cols=40  Identities=25%  Similarity=0.347  Sum_probs=34.0

Q ss_pred             ccccccCCcEEEE--ccCCeeeeeeEEecCceeeeccccccC
Q psy15063        325 EADIGEFPWQVAI--ALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       325 ~~~~~~~p~~~~~--~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ++..++|||++.+  +..+.++|+|+||+++||||||||+..
T Consensus        35 ~a~~~~~p~~~~v~i~~~~~~~c~G~lI~~~~VLTAaHcv~~   76 (242)
T 1agj_A           35 EKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKF   76 (242)
T ss_dssp             TTGGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHGG
T ss_pred             cccccccccceEEEEEECCCccEEEEEEeCCEEEEChhhccc
Confidence            4678899999655  456779999999999999999999954

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=98.24  E-value=1.9e-07  Score=84.23  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             cccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        326 ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       326 ~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      +.+++|||++++.   .++|+|+||+++||||||||+.
T Consensus         8 ~~~~~~P~~v~~~---~~~c~G~lI~~~~VLTaaHcv~   42 (200)
T 2w7s_A            8 TDATKEPYNSVVA---FVGGTGVVVGKNTIVTNKHIAK   42 (200)
T ss_dssp             SCTTSTTGGGEEE---ETTEEEEEEETTEEEECHHHHH
T ss_pred             eccccCCcccccc---cceEEEEEEECCEEEEChhhcC
Confidence            6788999999885   4799999999999999999984

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.20  E-value=2e-05  Score=80.01  Aligned_cols=85  Identities=14%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             cccceEEEeeCC--eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEE
Q psy15063        127 QDVCAVRIEFEK--VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIAL  204 (417)
Q Consensus       127 ~~~C~GtLIs~~--~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIAL  204 (417)
                      ...|+|.+|+++  ||||+   +||+.+.      ..+.|.+..          ...+..+-+..+|       ..||||
T Consensus        85 ~~~GSG~ii~~~~g~IlTn---~HVv~~a------~~i~V~~~d----------g~~~~a~vv~~d~-------~~DlAv  138 (448)
T 1ky9_A           85 MALGSGVIIDADKGYVVTN---NHVVDNA------TVIKVQLSD----------GRKFDAKMVGKDP-------RSDIAL  138 (448)
T ss_dssp             EEEEEEEEEETTTTEEEEE---HHHHTTE------EEEEEEETT----------SCEEEEEEEEEET-------TTTEEE
T ss_pred             ccEEEEEEEECCCCEEEEC---hHHhCCC------CEEEEEECC----------CCEEEEEEEEEcC-------CCCEEE
Confidence            358999999985  99999   9999642      567777642          1223333233333       479999


Q ss_pred             EEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        205 LQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       205 LkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      ||++.+-    .+.++.|.+......|+.+++.||..
T Consensus       139 lkv~~~~----~~~~~~l~~s~~~~~G~~V~aiG~P~  171 (448)
T 1ky9_A          139 IQIQNPK----NLTAIKMADSDALRVGDYTVAIGNPF  171 (448)
T ss_dssp             EEESSCC----SCCCCCBCCGGGCCTTCEEEEEECTT
T ss_pred             EEecCCC----CCceEEecccccCCCCCEEEEEECCC
Confidence            9998652    34566666543222799999999754

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=98.19  E-value=2.8e-07  Score=83.04  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             cccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        326 ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       326 ~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +..++|||++.++.   .+|+|+||+++||||||||+..
T Consensus         8 ~~~~~~P~~~~~~~---~~c~G~lI~~~~VLTaaHcv~~   43 (204)
T 2vid_A            8 KDTNIFPYTGVVAF---KSATGFVVGKNTILTNKHVSKN   43 (204)
T ss_dssp             SCTTSTTGGGEEEC---SSCEEEEEETTEEEECHHHHTT
T ss_pred             ccCCcCchhheEEe---eeEEEEEEECCEEEEChhHCCC
Confidence            67889999997653   5999999999999999999954

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=98.18  E-value=4.3e-07  Score=84.85  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=33.1

Q ss_pred             cccccCCcEEEE--ccCCeeeeeeEEecCceeeeccccccC
Q psy15063        326 ADIGEFPWQVAI--ALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       326 ~~~~~~p~~~~~--~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +..++|||++.+  ...+.++|+|+||+++||||||||+..
T Consensus        29 ~~~~~~P~~~~~~i~~~~~~~c~G~lI~~~~VLTAaHcv~~   69 (246)
T 1qtf_A           29 TDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVARE   69 (246)
T ss_dssp             SCCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHGG
T ss_pred             hhcCcCchhcEEEEEECCCceEEEEEEECCEEEECHHhCCC
Confidence            457899999754  456789999999999999999999954

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=98.18  E-value=3.5e-07  Score=86.69  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=31.7

Q ss_pred             cccccCCcEEE--Ecc---CCeeeeeeEEecCceeeeccccccC
Q psy15063        326 ADIGEFPWQVA--IAL---DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       326 ~~~~~~p~~~~--~~~---~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +..++|||++.  |..   .+.++|+|+||+++||||||||+..
T Consensus        12 ~~~~~~P~~~~v~l~~~~~~g~~~CgG~lI~~~~VLTAAHCv~~   55 (268)
T 1wcz_A           12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDA   55 (268)
T ss_dssp             SCTTSGGGTTEEEEEEEC-CCEEEEEEEECSSSEEEECHHHHGG
T ss_pred             cCCCCCCccEEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCCC
Confidence            45678888865  433   4679999999999999999999954

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=98.10  E-value=1.3e-06  Score=82.68  Aligned_cols=29  Identities=41%  Similarity=0.707  Sum_probs=25.8

Q ss_pred             EEEccCCeeeeeeEEecC------ceeeecccccc
Q psy15063        335 VAIALDGMFFCGGALLNE------HFVLTAAHCIM  363 (417)
Q Consensus       335 ~~~~~~~~~~Cggsli~~------~~vLtaAhC~d  363 (417)
                      +.|...+.|+||||||++      +||||||||+.
T Consensus        26 ~rl~~~g~~~CGGSLI~~~~~~~~~~VLTAAHCv~   60 (268)
T 1arb_A           26 GAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGM   60 (268)
T ss_dssp             EEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSC
T ss_pred             EEEEeCCccEEeEEEEcCCCCCCCCEEEEcHHhCC
Confidence            567778899999999998      59999999985

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=98.10  E-value=5.7e-07  Score=85.50  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             cccccCCcEEE--Ecc---CCeeeeeeEEecCceeeeccccccC
Q psy15063        326 ADIGEFPWQVA--IAL---DGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       326 ~~~~~~p~~~~--~~~---~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +...+|||++.  |..   .+.++|+|+||+++||||||||+..
T Consensus        12 ~~~~~~P~~~~v~i~~~~~~~~~~C~G~lI~~~~VLTAAHCv~~   55 (274)
T 2o8l_A           12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDA   55 (274)
T ss_dssp             SSTTSGGGTTEEEEEEEETTEEEEEEEEEEETTEEEECHHHHHT
T ss_pred             cCCCCCCcceEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCcc
Confidence            45678888865  432   3568999999999999999999954

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=97.99  E-value=1.2e-06  Score=79.64  Aligned_cols=36  Identities=17%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             cccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        326 ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       326 ~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +..++|||++++.   .++|+|+||+++||||||||+..
T Consensus         9 ~~~~~~P~~v~~~---~~~c~G~lI~~~~VLTaaHcv~~   44 (210)
T 2as9_A            9 KDTNNFPYNGVVS---FKDATGFVIGKNTIITNKHVSKD   44 (210)
T ss_dssp             SCTTSTTGGGEEE---CSSCEEEEEETTEEEECHHHHHH
T ss_pred             ecCCcCCeEEEEE---eeeEEEEEEeCCEEEECHhHCCc
Confidence            4578999999775   37999999999999999999853

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=97.77  E-value=6.8e-05  Score=67.61  Aligned_cols=41  Identities=24%  Similarity=0.481  Sum_probs=27.5

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcC-----CCccc-cCCCCeEEEecccch
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGV-----TGCAI-MPSYPDLYTRVSEYI  406 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~-----~~C~~-~~~~p~vyt~Vs~~~  406 (417)
                      ||||||+.. +++  ++||.|++.     ..|.. ....-++|..|...+
T Consensus       142 DSGGPl~~~-~g~--~vGI~s~~~~~~~~~~c~~~~~~g~~f~~Pi~~vl  188 (198)
T 2h5c_A          142 DSGGSWITS-AGQ--AQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPIL  188 (198)
T ss_dssp             CTTCEEECT-TCB--EEEEEEEECCCTTSBSTTSCGGGCCEEEEEHHHHH
T ss_pred             cceeEEEee-CCE--EEEEEEeecCccCCCccccccCCceEEEEEHHHHH
Confidence            999999932 665  999999984     45620 022346787776544

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=97.26  E-value=0.0012  Score=72.01  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=55.0

Q ss_pred             ceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecC
Q psy15063        130 CAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDR  209 (417)
Q Consensus       130 C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~  209 (417)
                      =.+|||+|+||+|+   || ..+.        -.|.+|.   .      ...+   +|+.|++|.    ..|+++.||.+
T Consensus        58 G~aTLI~pqYiVSv---aH-n~gy--------~~v~fG~---~------~n~Y---~iV~rnn~~----~~Dy~~pRL~K  109 (1048)
T 1wxr_A           58 GVATLINPQYIASV---KH-NGGY--------TNVSFGD---G------ENRY---NIVDRNNAP----SLDFHAPRLDK  109 (1048)
T ss_dssp             CCCEEEETTEEEBC---TT-CCSC--------CEECCTT---S------CCCE---EEEECCBCS----SSSCBCCEESS
T ss_pred             ceEEEEcCcEEEEe---ee-cCCC--------ceEEeCC---C------cceE---EEEeeCCCC----CCCeeeeeccc
Confidence            35789999999999   88 2111        2456664   0      1123   237888885    24999999999


Q ss_pred             CcCCCCceeeeeCCCCCC-------ccCCCeEEEEEcCcc
Q psy15063        210 PVPLTGTIQPVCLPQKGE-------SFIGKRGHVVGWGVT  242 (417)
Q Consensus       210 pv~~s~~v~PicLp~~~~-------~~~~~~~~v~GWG~~  242 (417)
                      .|+   -+.||-+.....       .......+..|-|..
T Consensus       110 ~VT---EvaP~~~t~~g~~~~~y~d~ery~~f~RvGsG~q  146 (1048)
T 1wxr_A          110 LVT---EVAPTAVTAQGAVAGAYLDKERYPVFYRLGSGTQ  146 (1048)
T ss_dssp             CCC---SSCCCCBCSSCSCTTGGGCTTTCCCEEEEECSCE
T ss_pred             ccc---cccceeeccccCccccccccccCceEEEECCcEE
Confidence            987   477888765541       014566777888876

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.19  E-value=0.0034  Score=64.78  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=57.8

Q ss_pred             CCcceeeE-ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCC
Q psy15063        118 TCDYDVAI-RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPF  196 (417)
Q Consensus       118 ~~PW~v~i-~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~  196 (417)
                      ..||+..- ....-+|.+|++.+|||.   +|++.+      ...+.|.+-.         ....+..+-+...|     
T Consensus        63 ~~Pw~~~~~~~s~GSGfiI~dG~IlTN---~HVV~~------a~~i~V~~~~---------dg~~~~A~vv~~D~-----  119 (539)
T 4fln_A           63 SLPWQKQRQFTSTGSAFMIGDGKLLTN---AHCVEH------DTQVKVKRRG---------DDRKYVAKVLVRGV-----  119 (539)
T ss_dssp             SSTTSBCCCEEEEEEEEEEETTEEEEC---GGGGTT------EEEEEEECTT---------CCCCEEEEEEEEET-----
T ss_pred             CCccccCCccceEEEEEEEECCEEEEC---hHHcCC------CCeEEEEEcc---------CCEEEEEEEEEECC-----
Confidence            35776543 223678999999999999   999964      2566665421         01122222222222     


Q ss_pred             CCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        197 VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       197 ~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                        ..||||||++.+-. ...+.|+.+.... . .++.+.+.|+-.
T Consensus       120 --~~DLAvLkv~~~~~-~~~~~pl~~g~~~-~-vGd~V~aiG~P~  159 (539)
T 4fln_A          120 --DCDIALLSVESEDF-WKGAEPLRLGHLP-R-LQDSVTVVGYPL  159 (539)
T ss_dssp             --TTTEEEEEECCSSS-STTCCCCCBCCCC-C-TTCEEEEEECCS
T ss_pred             --CCCEEEEEEeCCcC-CcCCceeecCCcC-c-CCCeEEEEEcCC
Confidence              36999999986532 2234455554332 2 688899998754

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=95.47  E-value=0.064  Score=46.38  Aligned_cols=79  Identities=8%  Similarity=-0.025  Sum_probs=49.2

Q ss_pred             cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEE
Q psy15063        127 QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ  206 (417)
Q Consensus       127 ~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLk  206 (417)
                      ...++|.+| +.+|||+   +||+.+.      ..+.|.++           ...+..+ ++..|       ..||||||
T Consensus        20 ~~~GSGfii-~g~IlTn---~HVV~~~------~~i~V~~d-----------g~~~~a~-vv~d~-------~~DlAlLk   70 (163)
T 2w5e_A           20 EGKGTGFFS-GNDIVTA---AHVVGNN------TFVNVCYE-----------GLMYEAK-VRYMP-------EKDIAFIT   70 (163)
T ss_dssp             TEEEEEEEE-TTEEEEE---HHHHTTC------SEEEEEET-----------TEEEEEE-EEECC-------SSSEEEEE
T ss_pred             ceeEEEEEE-CCEEEec---HHHhCCC------ceEEEEEC-----------CEEEEEE-EEEEC-------CCCEEEEE
Confidence            347999999 8999999   9999753      45666651           1223332 33222       48999999


Q ss_pred             ecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcC
Q psy15063        207 LDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWG  240 (417)
Q Consensus       207 L~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG  240 (417)
                      ++.+.   ..+.|+.|.+..   .....++.|+.
T Consensus        71 v~~~~---~~~~~l~l~~~~---~~~~v~~~G~p   98 (163)
T 2w5e_A           71 CPGDL---HPTARLKLSKNP---DYSCVTVMAYV   98 (163)
T ss_dssp             CCTTC---CCSCCCCBCSSC---CTTEEEEEEEE
T ss_pred             ecCCC---CCcceEEcCCCC---CCCEEEEEEeC
Confidence            98643   123455555432   23566777764

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=95.26  E-value=0.0068  Score=54.02  Aligned_cols=40  Identities=10%  Similarity=-0.063  Sum_probs=27.7

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhh
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                      +||+|++..  ..  ++||..-+    . ..+.-..-++++.+.+||..
T Consensus       149 ~SGsP~~ng--~~--IVGvh~G~----~-~~~~~N~a~n~~~~~~~~~~  188 (191)
T 1zyo_A          149 WSGTPLYSS--RG--VVGMHVGF----E-EIGKLNRGVNMFYVANYLLR  188 (191)
T ss_dssp             CTTCEEECS--SC--EEEEEEEE----E-ETTTEEEEECHHHHHHHTCC
T ss_pred             CCCCcEEcC--Ce--EEEEEeCc----c-cCCceeeeeehHHHhhhhhh
Confidence            999999973  33  77998654    1 12344567888888888643

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=95.20  E-value=0.033  Score=51.00  Aligned_cols=41  Identities=22%  Similarity=0.193  Sum_probs=30.2

Q ss_pred             cCCcEEEEccC-----CeeeeeeEEecCceeeeccccccCCCceEE
Q psy15063        330 EFPWQVAIALD-----GMFFCGGALLNEHFVLTAAHCIMTGGPLTF  370 (417)
Q Consensus       330 ~~p~~~~~~~~-----~~~~Cggsli~~~~vLtaAhC~dsGgPL~~  370 (417)
                      .-|..+.|...     ....|.|+||+++||||||||+....-+..
T Consensus        40 ~~~svV~I~~~~~~~~~~~~GsG~iI~~~~VlTaaH~v~~~~~~~V   85 (237)
T 3k6y_A           40 TEPSVVKIRSLAPRCQKVLEGTGFVISPDRVMTNAHVVAGSNNVTV   85 (237)
T ss_dssp             HGGGEEEEEEEEGGGTEEEEEEEEEEETTEEEECGGGTTTCSEEEE
T ss_pred             hcCCEEEEEEEecCCCcceeEEEEEEECCEEEECHHHcCCCceEEE
Confidence            35677777442     256999999999999999999964443333

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=95.06  E-value=0.021  Score=55.01  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=27.9

Q ss_pred             cCCcEEEEcc---CCeeeeeeEEecC-ceeeeccccccC
Q psy15063        330 EFPWQVAIAL---DGMFFCGGALLNE-HFVLTAAHCIMT  364 (417)
Q Consensus       330 ~~p~~~~~~~---~~~~~Cggsli~~-~~vLtaAhC~ds  364 (417)
                      ..|+++.|..   .....|+|++|++ .||||||||+..
T Consensus        15 ~~~svV~I~~~~~~~~~~gsG~iI~~~g~ILT~aHvv~~   53 (324)
T 1y8t_A           15 VVPSVVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAA   53 (324)
T ss_dssp             HGGGEEEEEEEC----CEEEEEECCTTSEEEEEHHHHTT
T ss_pred             hcCcEEEEEEEccCCCceEEEEEEeCCCEEEEChHHcCC
Confidence            4788998865   3568999999997 799999999954

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=93.89  E-value=0.093  Score=47.87  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=28.1

Q ss_pred             eeeeeEEecCc-eeeeccccccCCCceEEee-CCeEEEEeEE
Q psy15063        343 FFCGGALLNEH-FVLTAAHCIMTGGPLTFEQ-DGYHVLAGIV  382 (417)
Q Consensus       343 ~~Cggsli~~~-~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~  382 (417)
                      ..+.|++|+++ ||||||||+.....+.... +++.+-.-++
T Consensus        63 ~~GSG~iI~~~G~VLTaaHvv~~~~~i~V~~~~g~~~~a~v~  104 (231)
T 3tjo_A           63 ASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIK  104 (231)
T ss_dssp             EEEEEEECSTTCEEEEETTTCCSSSEEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEEeCCCEEEEchhcccCCceEEEEcCCCCEEEEEEE
Confidence            57999999998 9999999997655554433 5544433333

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=93.83  E-value=0.037  Score=50.97  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=22.6

Q ss_pred             eeeeeeEEecCc-eeeeccccccCCCceE
Q psy15063        342 MFFCGGALLNEH-FVLTAAHCIMTGGPLT  369 (417)
Q Consensus       342 ~~~Cggsli~~~-~vLtaAhC~dsGgPL~  369 (417)
                      ...|+|++|+++ ||||+|||+....-+.
T Consensus        55 ~~~gsG~iI~~~g~ILTnaHvv~~~~~i~   83 (239)
T 1l1j_A           55 ASLGSGFIFDPEGYILTNYHVVGGADNIT   83 (239)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHSSCSSCE
T ss_pred             CceEEEEEEeCCCEEEEChHHhCCCCEEE
Confidence            578999999985 9999999996544343

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=92.96  E-value=0.46  Score=41.76  Aligned_cols=49  Identities=16%  Similarity=0.045  Sum_probs=32.4

Q ss_pred             cceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEe
Q psy15063        129 VCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL  207 (417)
Q Consensus       129 ~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL  207 (417)
                      .++|-.|+.+ +||||   +|=+.+.      +...|.++.           +++.|...   +       ..|+|++++
T Consensus        16 ~GsgF~i~~~g~vVTA---~HVv~~~------~~~~V~~~G-----------~~~~Vgf~---~-------~~DlA~l~v   65 (198)
T 1mbm_A           16 TGSVWTRNNEVVVLTA---SHVVGRA------NMATLKIGD-----------AMLTLTFK---K-------NGDFAEAVT   65 (198)
T ss_dssp             EEEEEEETTEEEEEEE---HHHHCTT------CEEEEEETT-----------EEEEEECE---E-------ETTEEEEEE
T ss_pred             ccceEEECCCeEEEEe---eeEEccC------ceEEEEECC-----------EEEEeecc---c-------CCcEEEEEe
Confidence            6788888877 69999   9988542      555666632           33333221   1       479999999

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=92.93  E-value=0.1  Score=50.15  Aligned_cols=36  Identities=14%  Similarity=0.219  Sum_probs=26.5

Q ss_pred             eeeeeeEEecCc-eeeeccccccCCCceEEee-CCeEE
Q psy15063        342 MFFCGGALLNEH-FVLTAAHCIMTGGPLTFEQ-DGYHV  377 (417)
Q Consensus       342 ~~~Cggsli~~~-~vLtaAhC~dsGgPL~~~~-~g~~~  377 (417)
                      ...|.|++|+++ ||||+|||+.....+.... +++.+
T Consensus        46 ~~~gsG~iI~~~G~IlT~aHvv~~~~~i~V~~~~g~~~   83 (325)
T 1lcy_A           46 ISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTY   83 (325)
T ss_dssp             EEEEEEEEEETTTEEEECHHHHTTCSEEEEECTTSCEE
T ss_pred             cccEEEEEEeCCCEEEECHHHcCCCCEEEEEeCCCCEE
Confidence            368999999998 9999999996554444332 45433

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=92.89  E-value=0.1  Score=50.06  Aligned_cols=36  Identities=17%  Similarity=0.396  Sum_probs=26.3

Q ss_pred             eeeeeeEEecCc-eeeeccccccCCCceEEee-CCeEE
Q psy15063        342 MFFCGGALLNEH-FVLTAAHCIMTGGPLTFEQ-DGYHV  377 (417)
Q Consensus       342 ~~~Cggsli~~~-~vLtaAhC~dsGgPL~~~~-~g~~~  377 (417)
                      ...|.|++|+++ ||||+|||+....-+.... +++.+
T Consensus        41 ~~~gsG~iI~~~G~IlT~aHvv~~~~~i~V~~~~g~~~   78 (318)
T 1te0_A           41 RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVF   78 (318)
T ss_dssp             EEEEEEEECSTTCEEEEEHHHHTTCSEEEEECTTSCEE
T ss_pred             CccEEEEEEeCCCEEEECHHHcCCCCEEEEEeCCCCEE
Confidence            479999999998 9999999996554443332 44433

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=92.20  E-value=0.045  Score=47.85  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             eeeee-eEEec---CceeeeccccccCC
Q psy15063        342 MFFCG-GALLN---EHFVLTAAHCIMTG  365 (417)
Q Consensus       342 ~~~Cg-gsli~---~~~vLtaAhC~dsG  365 (417)
                      ...|. |.++.   ++||||||||+..+
T Consensus        11 ~~~ct~G~~v~~~~~~~vlTaaHc~~~~   38 (181)
T 2sga_A           11 GSRCSLGFNVSVNGVAHALTAGHCTNIS   38 (181)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTC
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCC
Confidence            35798 99998   78999999998543

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=91.65  E-value=0.2  Score=44.43  Aligned_cols=45  Identities=27%  Similarity=0.231  Sum_probs=32.7

Q ss_pred             EEEEccCCeeeeeeEEe---cCceeeeccccccCC-CceEEeeCCeEEE
Q psy15063        334 QVAIALDGMFFCGGALL---NEHFVLTAAHCIMTG-GPLTFEQDGYHVL  378 (417)
Q Consensus       334 ~~~~~~~~~~~Cggsli---~~~~vLtaAhC~dsG-gPL~~~~~g~~~l  378 (417)
                      .+.|+.+++++|.|+.+   .+.++||||||.+.+ .++....+++.+.
T Consensus        18 vv~l~~~d~h~G~g~~V~~~G~~~LlTA~Hv~~~~~~~~~~~k~g~~ip   66 (191)
T 1zyo_A           18 LVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNSMRPTGLAKAGKQVS   66 (191)
T ss_dssp             EEEEEETTEEEEEEEEEEC--CEEEEECHHHHTSSSCCCEEEETTEEEE
T ss_pred             EEEEEeCCeEEEEEEEEEECCCcEEEEChhhCcCCcceeeecCCCCEEE
Confidence            44555566999999999   678999999999776 5566555665443

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=90.11  E-value=0.3  Score=44.52  Aligned_cols=36  Identities=17%  Similarity=0.386  Sum_probs=26.3

Q ss_pred             eeeeeEEecCc-eeeeccccccCCCceEEee-CCeEEE
Q psy15063        343 FFCGGALLNEH-FVLTAAHCIMTGGPLTFEQ-DGYHVL  378 (417)
Q Consensus       343 ~~Cggsli~~~-~vLtaAhC~dsGgPL~~~~-~g~~~l  378 (417)
                      ..+.|++|+++ ||||||||+.....+.... +++.+-
T Consensus        53 ~~GsG~ii~~~G~IlTaaHvv~~~~~~~V~~~~g~~~~   90 (237)
T 3lgi_A           53 TLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE   90 (237)
T ss_dssp             EEEEEEEEETTTEEEEEHHHHTTCSEEEEECTTSCEEE
T ss_pred             eEEEEEEEeCCCEEEEeeeecCCCCEEEEEeCCCCEEE
Confidence            48999999998 9999999997555544433 454333

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=89.99  E-value=0.11  Score=45.48  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=21.4

Q ss_pred             eeeee-eEEec---CceeeeccccccCCCceE
Q psy15063        342 MFFCG-GALLN---EHFVLTAAHCIMTGGPLT  369 (417)
Q Consensus       342 ~~~Cg-gsli~---~~~vLtaAhC~dsGgPL~  369 (417)
                      ...|. |.++.   ++||||||||++.+..+.
T Consensus        11 ~~~ct~Gf~v~~~~~~~ilTaaHcv~~~~~~~   42 (185)
T 2qa9_E           11 TGRCSLGFNVRSGSTYYFLTAGHCTDGATTWW   42 (185)
T ss_dssp             SCEEECCEEEEETTEEEEEECHHHHTTCSEEE
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCCCcEE
Confidence            35798 78776   479999999997665543

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=89.62  E-value=0.47  Score=45.58  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=25.7

Q ss_pred             eeeeeEEecCc-eeeeccccccCCCceEEee-CCeEE
Q psy15063        343 FFCGGALLNEH-FVLTAAHCIMTGGPLTFEQ-DGYHV  377 (417)
Q Consensus       343 ~~Cggsli~~~-~vLtaAhC~dsGgPL~~~~-~g~~~  377 (417)
                      ..+.|++|+++ ||||||||+....-+.... +++.+
T Consensus        46 ~~GSG~iI~~~G~ILTaaHvv~~~~~i~V~~~~g~~~   82 (332)
T 3num_A           46 ASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATY   82 (332)
T ss_dssp             EEEEEEEEETTTEEEECTTTCCTTSEEEEEETTSCEE
T ss_pred             eeEEEEEEeCCCEEEEChHHcCCCCEEEEEECCCCEE
Confidence            57899999998 9999999996554444333 55433

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=88.25  E-value=2.1  Score=46.38  Aligned_cols=74  Identities=7%  Similarity=0.068  Sum_probs=42.9

Q ss_pred             eEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCC---CCCCCCeEEEEe
Q psy15063        131 AVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHP---FVLSNDIALLQL  207 (417)
Q Consensus       131 ~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~---~~~~nDIALLkL  207 (417)
                      ..|||+|++|+++   +|=.         ..-.|.+|....... . +.-.+.+..   -.+|.+   .....|..+=||
T Consensus        59 vATLi~pQYiVSV---kHN~---------gy~~v~FG~~~~n~d-~-h~~~Y~iV~---RNn~~~~~~~~~~~Dfh~PRL  121 (1011)
T 3syj_A           59 VAALVENQYIVSV---AHNV---------GYTDVDFGAEGNNPD-Q-HRFTYKIVK---RNNYKKDNLHPYEDDYHNPRL  121 (1011)
T ss_dssp             SCEEEETTEEEBC---TTCC---------SCCEECCSCSSCCGG-G-CCCCEEEEE---CCBCCCBTTBCSCSCCBCCEE
T ss_pred             eeEEecCceEEEE---EecC---------CccceecccCCCCcc-c-cccceEEEe---ccCCCcccccCcccccccccc
Confidence            5799999999999   7722         223688886432111 1 122232222   223332   123459999999


Q ss_pred             cCCcCCCCceeeeeCCC
Q psy15063        208 DRPVPLTGTIQPVCLPQ  224 (417)
Q Consensus       208 ~~pv~~s~~v~PicLp~  224 (417)
                      .+-|+   -+.||-+..
T Consensus       122 nK~VT---EvaP~~~t~  135 (1011)
T 3syj_A          122 HKFVT---EAAPIDMTS  135 (1011)
T ss_dssp             SSCCC---SSCCCCBCC
T ss_pred             cceEE---eeccccccc
Confidence            98776   456666544

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=87.91  E-value=0.49  Score=45.79  Aligned_cols=35  Identities=17%  Similarity=0.158  Sum_probs=25.2

Q ss_pred             eeeeeEEecCc-eeeeccccccCCCceEEee-CCeEE
Q psy15063        343 FFCGGALLNEH-FVLTAAHCIMTGGPLTFEQ-DGYHV  377 (417)
Q Consensus       343 ~~Cggsli~~~-~vLtaAhC~dsGgPL~~~~-~g~~~  377 (417)
                      -.+.|++|+++ ||||||||++...-+.... +++.+
T Consensus        53 g~GSG~iI~~~G~IlT~aHvv~~~~~i~V~~~~g~~~   89 (348)
T 3qo6_A           53 GSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTF   89 (348)
T ss_dssp             EEEEEEEEETTTEEEECHHHHTTCSEEEEECTTSCEE
T ss_pred             ceEEEEEEeCCCEEEECHHHhCCCcEEEEEECCCCEE
Confidence            47999999998 9999999996544444333 45433

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=87.38  E-value=0.63  Score=42.79  Aligned_cols=40  Identities=25%  Similarity=0.382  Sum_probs=24.8

Q ss_pred             eeeeeeEEecCc--eeeeccccccCCCceEEee-CCeEEEEeE
Q psy15063        342 MFFCGGALLNEH--FVLTAAHCIMTGGPLTFEQ-DGYHVLAGI  381 (417)
Q Consensus       342 ~~~Cggsli~~~--~vLtaAhC~dsGgPL~~~~-~g~~~l~GI  381 (417)
                      .-.+.|.+|+++  ||||+|||++....+.... +++.+-.-+
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHvv~~a~~i~V~~~dg~~~~a~v  104 (245)
T 3sti_A           62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKL  104 (245)
T ss_dssp             --CCEEEEEETTTTEEEECGGGC----CEEEECTTSCEEEEEE
T ss_pred             cceEEEEEEeCCCCEEEEcHHHhCCCCEEEEEECCCCEEEEEE
Confidence            347899999998  9999999997655554443 555443333

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=81.14  E-value=1.3  Score=39.00  Aligned_cols=30  Identities=27%  Similarity=0.317  Sum_probs=23.8

Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceE
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLT  369 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~  369 (417)
                      ++...|...++..+|+|||+||.+.|.++.
T Consensus        12 ~~~~~CT~Gf~~~~~ilTa~Hc~~~~~~v~   41 (189)
T 2ea3_A           12 GGRSRCSIGFAVNGGFITAGHCGRTGATTA   41 (189)
T ss_dssp             TTEEEEECCEEETTEEEECGGGCCTTCEEE
T ss_pred             CCCCCCccCEEccCeEEEchhcCCCCCEEE
Confidence            455789987777779999999997776644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	417
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	2e-16
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	5e-07
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	4e-16
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	2e-08
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	1e-04
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	5e-16
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	4e-08
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	1e-05
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	6e-16
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	7e-08
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	7e-08
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	8e-16
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	2e-08
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	1e-15
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	2e-09
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	2e-15
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	2e-07
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	2e-15
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	4e-09
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	2e-15
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	2e-10
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	1e-08
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	2e-15
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	4e-09
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	3e-04
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	2e-15
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	3e-06
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	6e-04
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	2e-15
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	4e-09
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	2e-15
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	5e-08
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	5e-04
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	2e-15
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	8e-08
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	8e-07
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	2e-15
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	4e-08
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	5e-15
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	2e-08
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	5e-15
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	1e-09
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	3e-08
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	8e-15
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	5e-11
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	4e-08
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	1e-14
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	3e-09
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	1e-14
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	7e-13
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	3e-14
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	2e-10
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	4e-14
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	9e-10
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	6e-06
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	6e-14
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	7e-09
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	6e-14
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	3e-07
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	7e-07
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	7e-14
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	2e-06
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	8e-14
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	1e-10
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	2e-06
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	1e-13
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	3e-08
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	4e-04
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	1e-13
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	8e-09
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	0.001
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	1e-13
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	2e-08
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	1e-13
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	5e-07
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	1e-13
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	2e-07
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	3e-06
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	1e-13
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	5e-09
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	6e-08
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	2e-13
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	4e-10
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	2e-13
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	8e-09
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	2e-06
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	2e-13
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	2e-07
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	3e-13
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	2e-08
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	3e-13
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	5e-12
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	3e-09
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	4e-13
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	6e-10
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	1e-06
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	5e-13
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	9e-11
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	6e-13
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	2e-08
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	8e-13
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	2e-08
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	2e-12
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	3e-11
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	2e-12
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	9e-07
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	2e-12
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	2e-09
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	1e-06
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	3e-12
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	7e-09
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	3e-12
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	3e-07
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	4e-12
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	3e-06
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	7e-12
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	4e-08
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	7e-12
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	8e-09
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	1e-11
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	2e-07
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	2e-11
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	2e-07
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	2e-11
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	3e-09
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	7e-09
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	3e-11
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	5e-07
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	4e-06
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	4e-11
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	1e-06
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	2e-04
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	4e-10
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	4e-10
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	2e-09
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	1e-09
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	2e-08
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	5e-06
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	9e-08
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	5e-07
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	6e-04
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	8e-04
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	6e-04
d1agja_	242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	0.001

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (186), Expect = 2e-16
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
            II G E      P+  +I   G   CGG L++  +VLTAAHC  
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQY 46

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 12/136 (8%)

Query: 278 MLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAI 337
            +     +T           G+            T R+    ++     +   +      
Sbjct: 109 KMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPF 168

Query: 338 ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPD 397
               M   G A   +      +     GGPL  +     V   IVS G   C +  + P 
Sbjct: 169 ITKDMVCAGDAKGQKD-----SCKGDAGGPLICK----GVFHAIVSGG-HECGV-ATKPG 217

Query: 398 LYTRVSE-YIRWIHVN 412
           +YT +++ Y  WI  N
Sbjct: 218 IYTLLTKKYQTWIKSN 233

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 75.1 bits (183), Expect = 4e-16
 Identities = 26/91 (28%), Positives = 39/91 (42%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           II G E +    PWQVA+   G F CGG L++  +VLTAAHC+     +   +       
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDYQIWLGRHNLSKDE 60

Query: 380 GIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
               +     + +    DL     +Y+R   
Sbjct: 61  DTAQFHQVSDSFLDPQFDLSLLKKKYLRPYD 91

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
            +GG L  +     V  GI S+G + CA   +   ++T+V  + +WI 
Sbjct: 188 DSGGALICD----GVFQGITSWGYSECA-DFNDNFVFTKVMPHKKWIK 230

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 1/112 (0%)

Query: 179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVG 238
             +  +  +          +S+D+ LL+L +P  +T  ++ + LP +         +  G
Sbjct: 74  DPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLG-STCYTSG 132

Query: 239 WGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTC 290
           WG+ S      S TLQ +E+++ SN +C+    E +   +LCA   +  G+ 
Sbjct: 133 WGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSI 184

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 5e-16
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           ++ GG  D    P+Q A+   G   CGG L++  +VLTAAHC  
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKK 44

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL         L G+VS+G   C      P +YT V  Y  WI 
Sbjct: 177 GGPLVC----GDHLRGLVSWGNIPCG-SKEKPGVYTNVCRYTNWIQ 217

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
            LG H+L Q  E+S  +  V R + H  +       DI LL+L RP  L+  IQP+   +
Sbjct: 50  FLGKHNLRQ-RESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLP-LE 107

Query: 225 KGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPD 284
           +  S      H++GWG T+   G+   T+Q   + ++S   C       I   MLCA  +
Sbjct: 108 RDCSANTTSCHILGWGKTA--DGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDE 165

Query: 285 ETQGTCF 291
           +      
Sbjct: 166 KYGKDSC 172

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (183), Expect = 6e-16
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+ G +  +G +PWQV++  DG   CGG+LL+  +VLTAAHC      +      + 
Sbjct: 1   IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFA 57

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 7e-08
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 339 LDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDL 398
           +    FC G                     +  +     L GIVS+G TGCA +   P +
Sbjct: 170 IKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWG-TGCA-LAQKPGV 227

Query: 399 YTRVSEYIRWIH 410
           YT+VS++  WI 
Sbjct: 228 YTKVSDFREWIF 239

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 7e-08
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 169 HDLTQLNETSHVRRGVRRVLFHS------HFHPFVLSNDIALLQLDRPVPLTGTIQPVCL 222
                      ++ GV+ V++H         +    SNDIAL+ L  P+PLT  IQPVCL
Sbjct: 57  AGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCL 116

Query: 223 PQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIG---M 278
           P  G++ + GK   V GWG T +  G+ +  LQ+  V ++SN  C+        I     
Sbjct: 117 PAAGQALVDGKICTVTGWGNTQY-YGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMF 175

Query: 279 LCAAPDETQGTC 290
               P+     C
Sbjct: 176 CAGYPEGGIDAC 187

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (180), Expect = 8e-16
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           I+ G EA+    P+  ++ L+G   CGG L+ E +VL+AAHC+ 
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLE 44

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +    +GGPL        VL G+V+ G   C      P +YTRV+ Y  WI 
Sbjct: 178 SCKGDSGGPLV----CGGVLEGVVTSGSRVCG-NRKKPGIYTRVASYAAWID 224

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (180), Expect = 1e-15
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G     GE PWQV + ++G   CGG L+N  +V++AAHC 
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCF 43

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +    +GGP      G   L GIVS+G  GCA    +  +YTRVS+YI W+ 
Sbjct: 187 SCKGDSGGPHATHYRGTWYLTGIVSWGQ-GCA-TVGHFGVYTRVSQYIEWLQ 236

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 19/44 (43%), Positives = 32/44 (72%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A +G++P+QV++ L G   CG ++L+ + VLTAAHC+ 
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVD 44

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           A    +GGPL           GIVS+G   CA     PD+YTRVS ++ WI+
Sbjct: 173 ACHGDSGGPLV----ANGAQIGIVSFGS-PCA--LGEPDVYTRVSSFVSWIN 217

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 22/45 (48%), Positives = 27/45 (60%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
           +I G E DI E  + VA      FFCGG L+N  +V+TAAHC  T
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDST 45

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 357 TAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
                  +GGPL           GIVSYG   C      P +YT V +Y  WI 
Sbjct: 173 KDTCGGDSGGPLICN----GQFQGIVSYGAHPCG-QGPKPGIYTNVFDYTDWIQ 221

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 15/44 (34%), Positives = 28/44 (63%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           I+ G ++  G +PW VA+  D    CG +L++  ++++AAHC+ 
Sbjct: 1   IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVY 44

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.5 bits (140), Expect = 2e-10
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 2/136 (1%)

Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
           R+   S+    LG H  + L       R + +++ + H++    +NDIA++ L+  V  T
Sbjct: 46  RNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYT 105

Query: 215 GTIQPVCLPQKGESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEES 273
             IQP+CLP++ + F   R   + GWG   +  G  +  LQ+ +V +LSN +C   + E 
Sbjct: 106 DYIQPICLPEENQVFPPGRICSIAGWGALIY-QGSTADVLQEADVPLLSNEKCQQQMPEY 164

Query: 274 IGIGMLCAAPDETQGT 289
                +  A  E  G 
Sbjct: 165 NITENMVCAGYEAGGV 180

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 1e-08
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 366 GPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GPL  +++   +LAG+ S+G   CA +P+ P +Y RV  +  WI 
Sbjct: 189 GPLMCQENNRWLLAGVTSFGY-QCA-LPNRPGVYARVPRFTEWIQ 231

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT---FEQDGYH 376
           ++ G +A  G+FPWQV +      FCGG+++NE +++TAAHC+ TG  +T    E +   
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEE 60

Query: 377 VLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
                    V       +Y     + +  I  + ++
Sbjct: 61  TEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELD 96

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT 416
           +GGP   E +G   L GI+S+G   CA M     +YT+VS Y+ WI     +T
Sbjct: 185 SGGPHVTEVEGTSFLTGIISWGE-ECA-MKGKYGIYTKVSRYVNWIKEKTKLT 235

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 175 NETSHVRRGVRRVLFHSHFHPFVLSND--IALLQLDRPVPLTGTIQPVCLPQKGES--FI 230
            E +  +R V R++ H +++  +   +  IALL+LD P+ L   + P+C+  K  +  F+
Sbjct: 61  TEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFL 120

Query: 231 GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTC 290
                 V      F  G  +  LQ L V ++  A C    + +I   M CA   E     
Sbjct: 121 KFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDS 180

Query: 291 FVPVSPVGYTKKHLQQFHQ 309
               S   +  +       
Sbjct: 181 CQGDSGGPHVTEVEGTSFL 199

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 20/97 (20%), Positives = 32/97 (32%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           II G E      P+ V ++LD    C GAL+ + +VLTAAHC +                
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITRE 60

Query: 380 GIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT 416
                 +      P            ++ + +     
Sbjct: 61  EPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAK 97

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVT-GCAIMPSYPDLYTRVSE-YIRWIH 410
           +    +G PL  E     V  G+ S+G+   C   P  P +Y  +S+ ++ WI 
Sbjct: 179 SCNGDSGSPLLCE----GVFRGVTSFGLENKCG-DPRGPGVYILLSKKHLNWII 227

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 175 NETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKR 233
            E +     V++   +  + P     D+ LLQL     +   +  + LP+KG+    G  
Sbjct: 60  EEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTM 119

Query: 234 GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV----IEESIGIGMLCAAPDETQGT 289
             V GWG T       S TL+++E+ ++    C+          IG+ M+CA        
Sbjct: 120 CQVAGWGRTHNSA-SWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRD 178

Query: 290 CF 291
             
Sbjct: 179 SC 180

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 72.8 bits (177), Expect = 2e-15
 Identities = 22/43 (51%), Positives = 32/43 (74%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G  A  G+FP+ V+I+ +G  +CGG+LLN + VLTAAHC+
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCV 43

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 54.3 bits (129), Expect = 4e-09
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA 413
           +    +GGP+    D  + L G VS+G  GCA  P+Y  +Y  V     +I   A
Sbjct: 175 SCQGDSGGPIV---DSSNTLIGAVSWGN-GCA-RPNYSGVYASVGALRSFIDTYA 224

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 72.8 bits (177), Expect = 2e-15
 Identities = 20/43 (46%), Positives = 31/43 (72%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G EA    +P Q A+ +D M+FCGG+L++  ++LTAAHC+
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCM 43

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 51.2 bits (121), Expect = 5e-08
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT 416
                +GGPL    +   +  GI S+G         YPD +TRV+ ++ WI     +T
Sbjct: 173 TCNGDSGGPL----NYNGLTYGITSFGA-AAGCEAGYPDAFTRVTYFLDWIQTQTGIT 225

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
            LG H++ + +E + V         H +++ FV+SNDIA+++L  PV LT  I  V LP 
Sbjct: 52  VLGAHNIRE-DEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPS 110

Query: 225 KGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPD 284
                        GWG+ S      S  L++++V ++SNA C  V    +  G +C    
Sbjct: 111 TDVGVGTVV-TPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVY-GIVTDGNICIDST 168

Query: 285 ETQGTC 290
             +GTC
Sbjct: 169 GGKGTC 174

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           ++ G   +    PWQVA+       CGG LL+ ++VLTAAHC +
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYV 44

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 8e-08
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL  +     +L G  SYG   C   P  P +YT + ++  WI 
Sbjct: 190 GGPLICD----GILQGTTSYGPVPCG-KPGVPAIYTNLIKFNSWIK 230

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 8e-07
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 189 FHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGE 248
             +       S+D+ LL+L +P  +T  ++P+ LP K       +    GWG  +    +
Sbjct: 84  LQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGS-KCLASGWGSITPTRWQ 142

Query: 249 PSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAA-PDETQGTC 290
               LQ + + +L N  C+ V  + +   MLCA      + TC
Sbjct: 143 KPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTC 185

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 2e-15
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           I+ G +A   +FP+  +I   G  FCGGAL++  FV+TAA C  
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQ 44

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 4e-08
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
                 G PL  E     +  G+ S+ +  C      PD +TRV+ +  WI 
Sbjct: 170 ICNGDGGTPLVCE----GLAHGVASFSLGPCG---RGPDFFTRVALFRDWID 214

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (174), Expect = 5e-15
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           I+ G  A    +P+ V++ L G  FCG  L+  +FV++AAHC+ 
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVA 44

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 358 AAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
                 +G PL        ++ GI S+   GCA    YPD +  V++++ WI 
Sbjct: 167 GVCFGDSGSPLVCN----GLIHGIASFVRGGCA-SGLYPDAFAPVAQFVNWID 214

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.2 bits (173), Expect = 8e-15
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           I+ G E      PWQ A+       CGG L+ + +VLTAAHC  
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKK 44

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 5e-11
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFH--PFVLSNDIALLQLDRPVPLTGTIQPVCL 222
            LGDH L   ++     +  + +    + +  P   S+DI L++L     L   ++PV  
Sbjct: 50  RLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQ- 108

Query: 223 PQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAA 282
                  +G++  + GWG  + P      TL   EVK+ S  +C       I  GM+CA 
Sbjct: 109 LANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAG 168

Query: 283 PDETQGTCF 291
                 TC 
Sbjct: 169 SSNGADTCQ 177

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +GGPL  +     +L GI S+G   C   P  P +YT++  Y  WI 
Sbjct: 180 SGGPLVCD----GMLQGITSWGSDPCG-KPEKPGVYTKICRYTTWIK 221

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 1e-14
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ 372
           ++ G        W V++       CGG+L+ E +VLTA  C  +     +E 
Sbjct: 1   VVNGIPTRTNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEA 52

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 357 TAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +       GGPL  EQ    ++ G++  G  GCA +P+ P ++ RV+ Y +WIH
Sbjct: 172 SGPCEGDYGGPLVCEQHKMRMVLGVIVPG-RGCA-IPNRPGIFVRVAYYAKWIH 223

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 1e-14
 Identities = 35/275 (12%), Positives = 70/275 (25%), Gaps = 72/275 (26%)

Query: 156 DTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTG 215
           D     + + +G        E                  P     D+AL++L   +    
Sbjct: 54  DDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQ 113

Query: 216 TIQPVCLPQKGESF------------IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
           TI+P+CLP    +               K   +    + +  + E    L + E      
Sbjct: 114 TIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKE------ 167

Query: 264 ARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILG 323
                                       V +          +       Y + +      
Sbjct: 168 ----------------------------VYIKNGDKKGSCERDAQYAPGYDKVK------ 193

Query: 324 GEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVS 383
                      ++  +   F C G +       T      +GGPL   +    +  G++S
Sbjct: 194 ----------DISEVVTPRFLCTGGVSPYADPNTC--RGDSGGPLIVHKRSRFIQVGVIS 241

Query: 384 YGVT-GCA-------IMPSYPDLYTRVSEYIRWIH 410
           +GV   C        +     D +  + + + W+ 
Sbjct: 242 WGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLK 276

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 7e-13
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 323 GGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
               D  + PWQ  I++     G   C GA+++E+FVLTAAHC 
Sbjct: 8   RKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCF 51

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 3e-14
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 310 GTTYRQPRR---RIILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIM 363
           G    +P++    ++ G  A    +PWQV++    GM FCGG L++  +VLTAAHC+ 
Sbjct: 5   GKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLE 62

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 357 TAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           T +    +GGPL   +   ++L G+ S+G+ GCA  P+ P +Y RVS ++ WI 
Sbjct: 190 TDSCQGDSGGPLVCFEKDKYILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 241

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (167), Expect = 6e-14
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I GG +A  G+FPWQV   + G     GALL +++VLTAAH +
Sbjct: 1   IYGGQKAKPGDFPWQVL--ILGGTTAAGALLYDNWVLTAAHAV 41

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 7e-09
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 357 TAAHCIMTGGPLTF--EQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
             +    +GG L F   +     + GIVS+G   C        +YT+V  YI WI 
Sbjct: 182 KDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCG-EAGQYGVYTKVINYIPWIE 236

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.5 bits (166), Expect = 6e-14
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N+ +V++AAHC  +   +   +   +VL 
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59

Query: 380 GIVSYGVTGCAIMPSYPD 397
           G   +      I     D
Sbjct: 60  GNEQFVNAAKIIKHPNFD 77

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 1/97 (1%)

Query: 189 FHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGE 248
            H +F     +NDI L++L  PV L   +  V LP    +  G +  + GWG T      
Sbjct: 72  KHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLISGWGNTLSSGVN 130

Query: 249 PSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE 285
               LQ L+  +L  A C       I   M+C    E
Sbjct: 131 EPDLLQCLDAPLLPQADCEASSSFIITDNMVCVGFLE 167

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (112), Expect = 7e-07
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP+         L GIVS+G  GCA +P  P +YT+V  Y+ WI 
Sbjct: 178 GGPVVCN----GELQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 7e-14
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G        P+QV++   G  FCGG+L+N  +V++AAHC  +G  +   +D  +V+ 
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59

Query: 380 GIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           G   +     +I+    +  T  ++ +    
Sbjct: 60  GNEQFISASKSIVHPSYNSNTLNNDIMLIKL 90

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 376 HVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
             L GIVS+G  GC    + P +YT+V  Y+ WI 
Sbjct: 185 GKLQGIVSWGS-GCQ-AKNKPGVYTKVCNYVSWIK 217

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 68.1 bits (165), Expect = 8e-14
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
           I+ G E      P QV++   G  FCGG+L+NE++V++AAHC  +   +   +    V  
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTE 59

Query: 380 GIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI 414
           G   +  +   I       Y   ++ +        
Sbjct: 60  GSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPA 94

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 172 TQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIG 231
            ++ E S       RV+ H ++  + + NDI L++L +P  L   +QPV LP    +  G
Sbjct: 55  IKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTS-CAPAG 113

Query: 232 KRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAA-PDETQGTC 290
               V GWG T       S  LQ L + +LS + C+      I   M CA   +  + +C
Sbjct: 114 TMCTVSGWGNTMSST-ADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSC 172

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
            +GGP+         L G+VS+G  GCA  P  P +Y +V  +  W+ 
Sbjct: 175 DSGGPVVCN----GELQGVVSWGY-GCA-EPGNPGVYAKVCIFNDWLT 216

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 320 IILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIM 363
           I+ G E   GE PWQ  +   +   FCGG +L+E ++LTAAHC+ 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLY 45

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIM 392
               ++   +                A    +GGP        + + GIVS+G  GCA  
Sbjct: 154 NSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGE-GCA-R 211

Query: 393 PSYPDLYTRVSEYIRWIH 410
                +YT+V+ +++WI 
Sbjct: 212 KGKYGIYTKVTAFLKWID 229

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 3/144 (2%)

Query: 169 HDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES 228
              T+  E       V  V+ H+ F       DIA+L+L  P+     + P CLP++  +
Sbjct: 56  DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWA 115

Query: 229 FIG---KRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE 285
                 ++  +V     +   G  S  L+ LEV  +    C       I   M CA  D 
Sbjct: 116 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDT 175

Query: 286 TQGTCFVPVSPVGYTKKHLQQFHQ 309
            Q       S   +  +    +  
Sbjct: 176 KQEDACQGDSGGPHVTRFKDTYFV 199

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 1e-13
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 320 IILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCI 362
           +I G     G+ PWQV +        CG  L++  +VLTAAHC+
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCM 44

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 8e-09
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGP+     G   L G+VS+G  GC  +     +YT+VS Y+ WIH
Sbjct: 192 GGPMVASFHGTWFLVGLVSWGE-GCG-LLHNYGVYTKVSRYLDWIH 235

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
            LG++DL +  E   +   ++ V  H ++      NDIALL L +P  L+ TI P+CLP 
Sbjct: 53  RLGEYDLRR-WEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPD 111

Query: 225 KGES-----FIGKRGHVVGWGVTSF----PMGEPSPTLQKLEVKVLSNARC 266
            G +       G+   V GWG  S          +  L  +++ V+ +  C
Sbjct: 112 SGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNEC 162

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 67.8 bits (164), Expect = 1e-13
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHV 377
           ++ G  A  GEFP+ V +       CGGAL  +  VLTAAHC+   G  T       V
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGV 54

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 359 AHCIMTGGPLTF-EQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
                +GGP+   +     +  GIVS+G  GCA  P YP +YT VS +   I 
Sbjct: 167 TCQGDSGGPMFRKDNADEWIQVGIVSWGY-GCA-RPGYPGVYTEVSTFASAIA 217

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 1e-13
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           II G +A +G FPWQV   + G    GGALL + ++LTAAH + 
Sbjct: 1   IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLY 42

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 5e-07
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 359 AHCIMTGGPLTFEQD--GYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           A    +GG            V  GIVS+G+ GC+        YT+V  Y+ WI 
Sbjct: 186 ACQGDSGGVFAVRDPNTDRWVATGIVSWGI-GCS---RGYGFYTKVLNYVDWIK 235

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 67.4 bits (163), Expect = 1e-13
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 320 IILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIM 363
           I+ G     GE PWQ  +   +   FCGG +L+E ++LTAAHC+ 
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLY 45

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 1/117 (0%)

Query: 190 HSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEP 249
           H+ F       DIA+L+L  P+     + P  LP    +    +  + GWG T+    + 
Sbjct: 77  HNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPATG-TKCLISGWGNTASSGADY 135

Query: 250 SPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQ 306
              LQ L+  VLS A+C       I   M C    E         S          Q
Sbjct: 136 PDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQ 192

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 376 HVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
             L G+VS+G  GCA   + P +YT+V  Y++WI 
Sbjct: 189 GQLQGVVSWGD-GCA-QKNKPGVYTKVYNYVKWIK 221

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 1e-13
 Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 320 IILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIM 363
           ++ G +AD GE+PWQV++ AL     CG +L++ +++++AAHC +
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 5e-09
 Identities = 35/144 (24%), Positives = 63/144 (43%)

Query: 148 VCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL 207
             D    R +  ++    LG HD +Q +      R ++R++ H  F+ F    DIALL+L
Sbjct: 44  YIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLEL 103

Query: 208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
           ++P   +  ++P+CLP     F   +   V     +   G  +  LQK E++V++   C 
Sbjct: 104 EKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCE 163

Query: 268 TVIEESIGIGMLCAAPDETQGTCF 291
            ++ + I   M+C           
Sbjct: 164 NLLPQQITPRMMCVGFLSGGVDSC 187

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 6e-08
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 357 TAAHCIMTGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
             +    +GGPL+  E DG    AG+VS+G  GCA   + P +YTR+  +  WI
Sbjct: 184 VDSCQGDSGGPLSSVEADGRIFQAGVVSWGD-GCA-QRNKPGVYTRLPLFRDWI 235

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 2e-13
 Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 3/46 (6%)

Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
           I+ G EA   ++PWQV++ + G   M FCGG+L++  +VLTAAHC+
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV 46

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 4e-10
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +    +GGPL  + +G  + AG+VS+G  GCA  P+ P +YTRV+ Y+ WIH
Sbjct: 189 SCQGDSGGPLVCKVNGTWLQAGVVSWGE-GCA-QPNRPGIYTRVTYYLDWIH 238

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 67.0 bits (162), Expect = 2e-13
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
           I+ G + +    PWQVA+     + CGG L++  +V+TAAHC 
Sbjct: 1   IVGGYKCEKNSQPWQVAVI--NEYLCGGVLIDPSWVITAAHCY 41

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 53.5 bits (127), Expect = 8e-09
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLY 399
           D M   G                 +GGPL  +     VL GI S G T CA  P  P +Y
Sbjct: 168 DVMLCAGEMEGG-----KDTCAGDSGGPLICD----GVLQGITSGGATPCA-KPKTPAIY 217

Query: 400 TRVSEYIRWIH 410
            ++ ++  WI 
Sbjct: 218 AKLIKFTSWIK 228

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVG 238
           H       V   +       SND+ LL L  P  +TG ++ + LP K E  +G      G
Sbjct: 72  HPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTK-EPKVGSTCLASG 130

Query: 239 WGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAA-PDETQGTC 290
           WG T+      S  LQ + + +LSN +C    ++++   MLCA   +  + TC
Sbjct: 131 WGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTC 183

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 67.1 bits (162), Expect = 2e-13
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 320 IILGGEADIGEFPWQVAIALDG----MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGY 375
           ++ G +A    +PWQV++  D        CGG L+++ +VLTAAHCI +          +
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYRVVLGRH 60

Query: 376 H 376
            
Sbjct: 61  S 61

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 373 DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +G   + GIVS+G +        P ++TRVS YI WI+
Sbjct: 198 NGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWIN 235

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 66.8 bits (161), Expect = 3e-13
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
           +I G  A  GEFPWQ++           CG +LL+    L+A+HC+
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCV 46

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 357 TAAHCIMTGGPLTFEQDGYHVLAGIVSYGVT---GCAIMPSYPDLYTRVSEYIRWIHVNA 413
           T A    +GGPL    DG   + G+ S+ V+   G   +P YP +YTRVS Y+ WI  N+
Sbjct: 184 TGACNGDSGGPL-NCPDGGTRVVGVTSWVVSSGLGAC-LPDYPSVYTRVSAYLGWIGDNS 241

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score = 66.6 bits (161), Expect = 3e-13
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 12/97 (12%)

Query: 320 IILGGEADIGEFPWQVAIALD----GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGY 375
           I+ G +A +GEFP+Q++           FCG ++ NE++ +TA HC+          D Y
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVY--------GDDY 52

Query: 376 HVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
              +G+          +    +    VS+ I   + +
Sbjct: 53  ENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFD 89

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score = 63.1 bits (152), Expect = 5e-12
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 357 TAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI 414
             +    +GGPL     G   LAGIVS+G  GCA  P YP +YT VS ++ WI  NA+
Sbjct: 182 KDSCQGDSGGPLAASDTGSTYLAGIVSWGY-GCA-RPGYPGVYTEVSYHVDWIKANAV 237

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 163 VLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCL 222
           +  +       +NE S     V +++ H +F   +L NDI+LL+L   +     + P+ L
Sbjct: 58  LQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIAL 117

Query: 223 PQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI-EESIGIGMLCA 281
           P++G +  G    V GWG TS   G     LQK+ V ++S+  C      + I   M+CA
Sbjct: 118 PEQGHTATGD-VIVTGWGTTSEG-GNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICA 175

Query: 282 APDETQGTCFVPVSPVGYTKKHLQQFHQ 309
              E         S            + 
Sbjct: 176 GVPEGGKDSCQGDSGGPLAASDTGSTYL 203

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 4e-13
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
           I+ G  +  GE+PWQV +          CGG+++   ++LTAAHC 
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCF 46

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 6e-10
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
           A    +GGPL+ + +    L GI S+G  GCA     P +YT V EY+ WI
Sbjct: 183 ACKGDSGGPLSCKHNEVWHLVGITSWGE-GCA-QRERPGVYTNVVEYVDWI 231

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
           + G  + +++ E +     V+ ++ H  +       DIALL+L+  V  T + +P+CLP 
Sbjct: 58  YSGILNQSEIKEDTSFFG-VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPS 116

Query: 225 KGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGI-GMLCAAP 283
           KG+  +      V          +   TLQK ++ +++N  C            M+CA  
Sbjct: 117 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGY 176

Query: 284 DE-TQGTC 290
            E  +  C
Sbjct: 177 REGGKDAC 184

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 66.0 bits (159), Expect = 6e-13
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM 363
           ++ G EA    +P Q+++           CGG L+ +++V+TAAHC+ 
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD 48

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 367 PLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIH 410
           PL    +G + + G+ S+    GC +    P ++TRVS YI WI+
Sbjct: 191 PLHCLVNGQYAVHGVTSFVSRLGCNV-TRKPTVFTRVSAYISWIN 234

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 65.6 bits (158), Expect = 8e-13
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 320 IILGGEADIGEFPWQVAIALDG----MFFCGGALLNEHFVLTAAHCIM 363
           ++ G  A    +PWQ+++           CGG+L+ + +V+TAAHC+ 
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD 48

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 361 CIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIH 410
              +GGPL  + +G + + G+ S+   +GC      P ++TRVS YI W++
Sbjct: 184 NGDSGGPLNCQVNGSYYVHGVTSFVSSSGCN-ASKKPTVFTRVSAYISWMN 233

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 2e-12
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIM 363
           II G EA     P+   + +     +  CGG L+ + FVLTAAHC  
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWG 47

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 9e-07
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 360 HCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
               +GGPL        V  GIVSYG          P   T+VS ++ WI 
Sbjct: 179 FKGDSGGPLVC----NKVAQGIVSYGR-NNG---MPPRACTKVSSFVHWIK 221

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 3e-12
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 315 QPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
           + ++RII G +ADI  FPWQV        + GGAL+NE++VLTAAH + 
Sbjct: 9   EEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLTAAHVVE 54

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 359 AHCIMTGGPLTFE---QDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           +    +GG    +          AG+VS+G   C        LYTRV  Y+ WI 
Sbjct: 203 SCKGDSGGAFAVQDPNDKTKFYAAGLVSWGP-QCG----TYGLYTRVKNYVDWIM 252

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 4e-12
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 323 GGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM 363
           G E      P+   + +        FCGG L+  +FVLTAAHC  
Sbjct: 2   GTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG 46

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           GGPL        V  GIVSYG    A     P ++TR+S Y  WI+
Sbjct: 181 GGPLLCA----GVAQGIVSYGR-SDA---KPPAVFTRISHYRPWIN 218

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 62.5 bits (150), Expect = 7e-12
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM 363
           II G EA  G FP+Q  + +        +CGG+L++  ++LTAAHC+ 
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH 48

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 51.4 bits (121), Expect = 4e-08
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
                +GGP          L G+VS+  +G       P  ++RV+ Y+ WI  N
Sbjct: 175 PCFGDSGGPFVLSDKNL--LIGVVSFV-SGAGCESGKPVGFSRVTSYMDWIQQN 225

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 7e-12
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           I+ G EA     P+  ++ +    G  FCGG L++  FVLTAAHC+              
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 8e-09
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
                +GGPL  +     ++ GI S+ + GCA    +PD +TRV+ Y+ WI 
Sbjct: 171 ICFGDSGGPLICD----GIIQGIDSFVIWGCA-TRLFPDFFTRVALYVDWIR 217

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (148), Expect = 1e-11
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIM 363
           II G EA     P+   +          CGG L+ E FVLTAAHC+ 
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLG 47

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 360 HCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
               +GGPL        V  GIVSYG        + PD+YTR+S ++ WIH
Sbjct: 178 FSGDSGGPLVCN----GVAQGIVSYGR-NDG---TTPDVYTRISSFLSWIH 220

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 2e-11
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
           II G E+     P+   + +    G   CGG L+ E FVLTAAHC  +   +T       
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQ 60

Query: 377 VLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
                  +     AI     +  T  ++ +    
Sbjct: 61  RRENTQQHITARRAIRHPQYNQRTIQNDIMLLQL 94

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
           A    +GGPL       +V  GIVSYG          P+++TRVS ++ WI 
Sbjct: 176 AFKGDSGGPLLCN----NVAHGIVSYGK-SSG---VPPEVFTRVSSFLPWIR 219

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (147), Expect = 2e-11
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 330 EFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM 363
             PW VA+     + CGG LL+ ++VLTAAHC  
Sbjct: 2   SQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYN 35

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 3e-09
 Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 2/145 (1%)

Query: 148 VCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL 207
             D  Q+     + L     D          H    +  +  H+       SND+ LL+L
Sbjct: 34  YNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRL 93

Query: 208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
            +P  +T  ++P+ LP + E  +G      GWG T+    +    LQ + +K+L N  C 
Sbjct: 94  SKPADITDVVKPITLPTE-EPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCD 152

Query: 268 TVIEESIGIGMLC-AAPDETQGTCF 291
              E  +   MLC    D    TC 
Sbjct: 153 KAHEMKVTDAMLCAGEMDGGSYTCE 177

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (127), Expect = 7e-09
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 359 AHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
                +GGPL  +     +L GI S+G   C   P+ P +YT++ ++  WI 
Sbjct: 175 TCEHDSGGPLICD----GILQGITSWGPEPCG-EPTEPSVYTKLIKFSSWIR 221

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.5 bits (145), Expect = 3e-11
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM 363
           II G EA     P+   + +     G   CGG L+ E FVLTAAHC  
Sbjct: 1   IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSG 48

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (113), Expect = 5e-07
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 360 HCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
               +GGPL  +     V AGIVSYG        S P  +T+VS ++ WI 
Sbjct: 180 FRGDSGGPLVCK----KVAAGIVSYGQ-NDG---STPRAFTKVSTFLSWIK 222

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 26/117 (22%), Positives = 48/117 (41%)

Query: 175 NETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRG 234
            E       V +++ H  ++   +SNDI LL+L      +  ++P+ LP++         
Sbjct: 63  QEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDV 122

Query: 235 HVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCF 291
             V       PMG+ S TLQ++E+ V  + +C + ++          A D       
Sbjct: 123 CYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRAS 179

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 60.1 bits (144), Expect = 4e-11
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM 363
           II G E+     P+   + +         CGG L++  FVLTAAHC  
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG 48

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 360 HCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
               +GGPL        V  GIVSYG    A     P ++TRVS Y+ WI+
Sbjct: 178 FMGDSGGPLLCA----GVAHGIVSYGH-PDA---KPPAIFTRVSTYVPWIN 220

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 1/126 (0%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
            LG HD+ +  E++  +  V + + H  ++     +DI LL+L++ V LT  +  V LP 
Sbjct: 54  ILGAHDVRK-RESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPS 112

Query: 225 KGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPD 284
             +               +      S TL+++E++++    C           +   +P 
Sbjct: 113 PSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPT 172

Query: 285 ETQGTC 290
             +   
Sbjct: 173 TLRAAF 178

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 4e-10
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 310 GTTYRQPRR--RIILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM 363
           G    QP    R++ G +A    +PWQ+++           CGG L+  + VLTAAHCI 
Sbjct: 2   GAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCIS 61

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.5 bits (137), Expect = 4e-10
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
            +GGPL  + DG   + GIVS+G          P ++TRVS YI WI+
Sbjct: 199 DSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWIN 246

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ 224
            LG ++L   +E   +  GV  +  H  ++ F++ NDIAL++L   V L  TIQ  CLP 
Sbjct: 69  ALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPS 128

Query: 225 KGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS--TVIEESIGIGMLCAA 282
           +G          V      +  G  +  LQ+    V+  A CS       ++   M+CA 
Sbjct: 129 EGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAG 188

Query: 283 PDETQGTC 290
            D     C
Sbjct: 189 GDGVISAC 196

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (133), Expect = 1e-09
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 331 FPWQVAIALDG----MFFCGGALLNEHFVLTAAHCIMTGGPLT 369
           + WQV++  +        CGG+L+   +V+TA HCI T     
Sbjct: 2   WSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQ 44

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 359 AHCIMTGGPL-TFEQDGYHVLAGIVSYGVT-GCAIMPSYPDLYTRVSEYIRWIH 410
                +GGPL     DG   + G+ S+    GC      P ++TRVS +I WI 
Sbjct: 174 GCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCN-TIKKPTVFTRVSAFIDWID 226

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 5e-06
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 5/158 (3%)

Query: 160 SELVLHLGDHDLTQLNETSHVRRG-VRRVLFHSHFHPFVLSND--IALLQLDRPVPLTGT 216
               + LG++D + L  +  V       +  H  ++   ++    IAL++L R   L   
Sbjct: 41  RTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDK 100

Query: 217 IQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGI 276
           +Q   LP  G+    +    +      +  G     LQ+  +  +    CS      I +
Sbjct: 101 VQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITV 160

Query: 277 --GMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTT 312
              M+CA  D   G       P+            G T
Sbjct: 161 KKTMVCAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVT 198

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 50.1 bits (118), Expect = 9e-08
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 320 IILGGE-----ADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQD 373
           +++G +     A+    P+     +  G   C G L+  + +LT  HC+      ++   
Sbjct: 1   VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60

Query: 374 GYHVLAGIVSYGVTGCAIMPSY 395
           G        S  V G A M  +
Sbjct: 61  GSVYPGMNDSTAVNGSANMTEF 82

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 47.8 bits (112), Expect = 5e-07
 Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 4/47 (8%)

Query: 363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
            +G  +    D    + G+ + G      +   P       E+I + 
Sbjct: 170 NSGSAML---DQNQQIVGVHNAGY-SNGTINGGPKATAAFVEFINYA 212

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 361 CIMTGGPLTFEQDGYHVLAGIVSYGVTGCA-IMPSYPDLYTRVSEYIRWIHVNAIVTK 417
              + G   +  +   +  G +  G + C+    +  D Y RV     W    A  ++
Sbjct: 190 EPGSSGSPIYSPEKRVL--GQLHGGPSSCSATGTNRSDQYGRVFTS--WTGGGAAASR 243

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 12/43 (27%)

Query: 332 PWQ------VAIALDGMFFCGGALLN------EHFVLTAAHCI 362
             +       A +  G   C G+L+N      + + LTA HC 
Sbjct: 17  GRRDIIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCG 59

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 9/88 (10%), Positives = 21/88 (23%), Gaps = 5/88 (5%)

Query: 326 ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
            D     +     +      G F   G ++ +  +LT  H +            +     
Sbjct: 12  TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAIN 71

Query: 381 IVSYGVTGCAIMPSYPDLYTRVSEYIRW 408
             +Y   G                 +++
Sbjct: 72  QDNYPNGGFTAEQITKYSGEGDLAIVKF 99

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 301 KKHLQ---QFHQGTTYRQPRRRIILGGEADIGEFPWQ--VAIALDGMFFCGGALLNEHFV 355
           KKH +   +++    +  P+       E D  ++P+     + + G     G L+ ++ V
Sbjct: 8   KKHEEKWNKYYGVNAFNLPKELFSKVDEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTV 67

Query: 356 LTAAHCI 362
           LT  H  
Sbjct: 68  LTNRHIA 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	417
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	100.0
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	100.0
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	100.0
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	100.0
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	100.0
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	100.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	100.0
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	100.0
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	100.0
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1elva1	259	Complement C1S protease, catalytic domain {Human (	100.0
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	100.0
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	100.0
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	100.0
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	100.0
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	100.0
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	100.0
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	100.0
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	100.0
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	100.0
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	100.0
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	100.0
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	100.0
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	100.0
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	100.0
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	100.0
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	100.0
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	100.0
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	100.0
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	100.0
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	100.0
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	100.0
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	100.0
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	100.0
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.87
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.85
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	99.4
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.4
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.34
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	99.24
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	99.23
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	99.21
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	99.2
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	99.18
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	99.18
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	99.17
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	99.15
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	99.15
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	99.14
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	99.14
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	99.13
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	99.13
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	99.13
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	99.13
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	99.12
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	99.12
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	99.11
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.11
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.11
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	99.1
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	99.09
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	99.09
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	99.09
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	99.09
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	99.08
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	99.08
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	99.06
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	99.06
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	99.05
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	99.04
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	99.03
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	99.03
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	99.03
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	99.03
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.02
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	99.01
d1elva1	259	Complement C1S protease, catalytic domain {Human (	99.0
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	98.99
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	98.97
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	98.96
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	98.94
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	98.93
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	98.9
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	98.83
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	98.82
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	98.68
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	98.39
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	98.29
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	98.2
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	97.98
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	97.92
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	97.91
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	97.78
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	97.73
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	97.62
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	97.54
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	97.37
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	97.34
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	97.32
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	96.89
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	95.71
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	95.09
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	90.57

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=323.23  Aligned_cols=232  Identities=29%  Similarity=0.533  Sum_probs=204.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCCC--CCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLRD--TPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~--~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.+++   |||+|.|.    .++|+||||+++|||||   |||+.+....  .....+.+..+.++......+.
T Consensus         1 i~gG~~a~~~~---~Pw~v~i~~~~~~~~C~GtlIs~~~VLTa---A~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (241)
T d1eaxa_           1 VVGGTDADEGE---WPWQVSLHALGQGHICGASLISPNWLVSA---AHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPG   74 (241)
T ss_dssp             CBSCEECCTTS---STTEEEEEETTTEEEEEEEECSSSEEEEC---GGGGCCBTTBCTTCGGGEEEEESCCBTTCTTSTT
T ss_pred             CCCCEECCCCC---CCcEEEEEECCCCEEEEEEEEcCCEEEEC---eeeeecCCceeeeccceeeEEeeeeecccccCCC
Confidence            57899999984   99999994    34999999999999999   9999764332  2556788888888777666557


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|.++++||+|+.....||||||||+.|+.|+..++|||||...... .+..+...||+...... .....|+++.
T Consensus        75 ~~~~~v~~i~~Hp~y~~~~~~~diAll~L~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~  153 (241)
T d1eaxa_          75 VQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGG-TGALILQKGE  153 (241)
T ss_dssp             CEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTS-CBCSBCEEEE
T ss_pred             cEEEEEEEEEECCcccccccCCcccccccCCceecCcccceeeccccccccccceeEEEeccCCccccc-cccccceEEE
Confidence            889999999999999999999999999999999999999999999876655 78899999999887655 5677899999


Q ss_pred             EEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        258 VKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       258 v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +.+++...|+..++..+.+.++|++... ..+.|.|                                            
T Consensus       154 ~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~c~g--------------------------------------------  189 (241)
T d1eaxa_         154 IRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQG--------------------------------------------  189 (241)
T ss_dssp             EEECCHHHHHHHSTTTCCTTEEEEECTTCSSBCCTT--------------------------------------------
T ss_pred             EEEeCHHHHHHHhCccccCccceeccCCCCcccccC--------------------------------------------
Confidence            9999999999999888899999998776 7889999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                |+||||++.. +|+|+|+||+|++ .+|+ ..+.|+|||||+.|++||++++++
T Consensus       190 --------------------------d~G~pl~~~~~~g~~~L~Gi~s~~-~~c~-~~~~p~vft~V~~y~~WI~~~~gi  241 (241)
T d1eaxa_         190 --------------------------DSGGPLSSVEADGRIFQAGVVSWG-DGCA-QRNKPGVYTRLPLFRDWIKENTGV  241 (241)
T ss_dssp             --------------------------CTTCEEEEECTTSCEEEEEEEEEC-SSSS-CTTCCEEEEESGGGHHHHHHHHCC
T ss_pred             --------------------------cccceeEEEcCCCeEEEEEEEEEC-CCCC-CCCCCEEEEEHHHHHHHHHHHhCc
Confidence                                      9999999877 7899999999999 7887 689999999999999999999975

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-42  Score=317.67  Aligned_cols=229  Identities=28%  Similarity=0.511  Sum_probs=200.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|++|.++   +|||+|.|.   .++|+||||+++|||||   |||+.....  ....+.+.+|..+.........+.
T Consensus         1 i~gG~~a~~~---~~Pw~v~i~~~~~~~C~GtLIs~~~VLTa---AhCv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   72 (235)
T d1ekbb_           1 IVGGSDSREG---AWPWVVALYFDDQQVCGASLVSRDWLVSA---AHCVYGRNM--EPSKWKAVLGLHMASNLTSPQIET   72 (235)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEECSSSEEEEC---HHHHTTCCS--SGGGEEEEESCCBTTCCCCTTCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCCEEEEEEEEcCCEEEEC---hhhccCCCC--CccceeeeecccccccccCcceeE
Confidence            5789999888   599999983   34899999999999999   999976433  346778888888776665556788


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.|.++++||+|+.....||||||+|++|+.|+.+++|||||...... .+..+.++|||...... .....|++..+.+
T Consensus        73 ~~v~~~~~hp~~~~~~~~~diAli~L~~~v~~~~~~~picLp~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~  151 (235)
T d1ekbb_          73 RLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQG-STADVLQEADVPL  151 (235)
T ss_dssp             EEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTS-CBCSBCEEEEEEB
T ss_pred             eeeeeeeecccccccCccchhhhhhhcCceecCCceeeEECCCccccCCcceEEEEecccccccCC-cccccceeeEEEE
Confidence            999999999999999999999999999999999999999999877655 78999999999988755 4566899999999


Q ss_pred             eChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEc
Q psy15063        261 LSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIA  338 (417)
Q Consensus       261 ~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~  338 (417)
                      ++.+.|...+.. ...+.++|+.... ..+.|.|                                              
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~g----------------------------------------------  185 (235)
T d1ekbb_         152 LSNEKCQQQMPEYNITENMVCAGYEAGGVDSCQG----------------------------------------------  185 (235)
T ss_dssp             CCHHHHHHHCTTSCCCTTEEEECCTTCCCBCCTT----------------------------------------------
T ss_pred             ecHHHhcccccccccCcccEEEEcCCCCcccccC----------------------------------------------
Confidence            999999877665 6788999998877 6688999                                              


Q ss_pred             cCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        339 LDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       339 ~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                              |+||||++..+++|+|+||+|+| ..|+ ..+.|++||||+.|++||+++|.
T Consensus       186 ------------------------dsG~pl~~~~~~~~~l~Gi~S~g-~~~~-~~~~p~v~t~v~~y~~WI~~~i~  235 (235)
T d1ekbb_         186 ------------------------DSGGPLMCQENNRWLLAGVTSFG-YQCA-LPNRPGVYARVPRFTEWIQSFLH  235 (235)
T ss_dssp             ------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ------------------------CCCCccEEccCCEEEEEEEEEec-CCCC-CCCCCEEEEEHHHHHHHHHHhhC
Confidence                                    99999999999999999999999 7787 67899999999999999999874

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=1.7e-41  Score=314.70  Aligned_cols=227  Identities=31%  Similarity=0.523  Sum_probs=198.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc-------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ-------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~-------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.++.++   +|||+|.+..       ++|+|+||+++|||||   |||+...... ....+.+..+......... 
T Consensus         1 i~gG~~~~~~---~~Pw~v~l~~~~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~~~~-~~~~~~~~~~~~~~~~~~~-   72 (237)
T d2f91a1           1 IVGGTDATLG---EFPYQLSFQETFIGFSFHFCGASIYNENYAITA---GHCVYGDDYE-NPSGLQIVAGELDMSVNEG-   72 (237)
T ss_dssp             CBSCEECCTT---TSTTEEEEEEEETTEEEEEEEEEEEETTEEEEC---GGGTTTSCTT-SCCSEEEEESCSBTTSCCS-
T ss_pred             CCCCEECCCC---CCCcEEEEEEecCCCCcEEEEEEEEeCCEEEEC---cccccccCCc-cccceeEEeeecccccccC-
Confidence            5788888888   5999999843       2799999999999999   9999765332 3466777777766665555 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      ..+...|.++++||+|+....+||||||+|.+++.+++.++|||++..... .+..+.++|||.+.... ..++.|+++.
T Consensus        73 ~~~~~~v~~i~~h~~y~~~~~~~diAll~l~~~v~~~~~~~~i~~~~~~~~-~~~~~~~~g~g~~~~~~-~~~~~l~~~~  150 (237)
T d2f91a1          73 SEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHT-ATGDVIVTGWGTTSEGG-NTPDVLQKVT  150 (237)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCC-CCSEEEEEESCCSSTTC-CCCSBCEEEE
T ss_pred             cceeeeEEEEEEccccCCCccccceeeeccccccccCCceeeeeccccCcc-cccceeeccccccCCCC-cCCchheEEE
Confidence            678889999999999999999999999999999999999999999988765 68899999999987765 5778899999


Q ss_pred             EEEeChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        258 VKVLSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       258 v~i~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      +.+++.+.|+..+.. .+...++|....+ ..+.|.+                                           
T Consensus       151 ~~~~~~~~C~~~~~~~~~~~~~~c~~~~~~~~~~~~g-------------------------------------------  187 (237)
T d2f91a1         151 VPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQG-------------------------------------------  187 (237)
T ss_dssp             EEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBCCTT-------------------------------------------
T ss_pred             EEEeCHHHHhhhccCCcccCceeEeecCCCccccccC-------------------------------------------
Confidence            999999999988765 6788899998877 6789999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhh
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                                                 |+||||++..+++|+|+||+|+| ..|. ..+.|.+||||+.|++||++|+
T Consensus       188 ---------------------------dsG~Pl~~~~~~~~~L~Gi~S~g-~~c~-~~~~p~v~t~v~~y~~WI~~n~  236 (237)
T d2f91a1         188 ---------------------------DSGGPLAASDTGSTYLAGIVSWG-YGCA-RPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             ---------------------------CTTCEEEECTTSSCEEEEEEEEE-SSSS-CTTCCEEEEEGGGSHHHHHHHC
T ss_pred             ---------------------------CCCCeEEEecCCeEEEEEEEEeC-CCCC-CCCCCEEEEEHHHHHHHHHHhC
Confidence                                       99999999988999999999999 7888 6788999999999999999886

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-41  Score=312.64  Aligned_cols=220  Identities=25%  Similarity=0.461  Sum_probs=189.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+.       ...+.++..+...... ..+.
T Consensus         1 ivgG~~a~~~---e~Pw~v~i~~~~~~~C~GtLIs~~~VLTa---AhCv~~~-------~~~~~~~~~~~~~~~~-~~~~   66 (232)
T d1orfa_           1 IIGGNEVTPH---SRPYMVLLSLDRKTICAGALIAKDWVLTA---AHCNLNK-------RSQVILGAHSITREEP-TKQI   66 (232)
T ss_dssp             CBSCEECCTT---SSTTEEEEECSSSCEEEEEEEETTEEEEC---TTCCCCT-------TCEEEESCSBSSSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCCEEEEEEEecCCEEEEC---hhhcCCC-------Ccceeeeeeecccccc-cccc
Confidence            5789999998   499999994   34999999999999999   9999763       3345566666555444 6778


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      ..+..++.||+|+..+..||||||+|++|+.++.+++|||||...... .+..+.++|||.+.... ..+..|+++.+.+
T Consensus        67 ~~~~~i~~hp~y~~~~~~~diAll~l~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~l~~~~~~~  145 (232)
T d1orfa_          67 MLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSA-SWSDTLREVEITI  145 (232)
T ss_dssp             ECEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSS-CCCSBCEEEEEEE
T ss_pred             ceEEEEEecccccccccCcceeEeeeccceeeeeeEeeeeecccccccccCceeeeccccccCCcc-cCChhheEEEeec
Confidence            889999999999999999999999999999999999999999877765 78999999999988665 5678999999999


Q ss_pred             eChhhhhhhhhc----cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        261 LSNARCSTVIEE----SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       261 ~~~~~C~~~~~~----~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      ++.++|+..+..    .+.+.++|++... +.+.|.|                                           
T Consensus       146 ~~~~~C~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~g-------------------------------------------  182 (232)
T d1orfa_         146 IDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNG-------------------------------------------  182 (232)
T ss_dssp             ECHHHHTSTTTTTTTTCCCTTEEEEECSSCCCBCCTT-------------------------------------------
T ss_pred             CCHHHHhhhhhcccCccccCceEEeccCCCCcccccc-------------------------------------------
Confidence            999999876532    5788999998877 7889999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecc-cchhHHhhhh
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVS-EYIRWIHVNA  413 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs-~~~~WI~~~~  413 (417)
                                                 |+||||++  ++  +|+||+|||. .+|+ ..+.|+|||||+ .|++||+++|
T Consensus       183 ---------------------------dsG~Pl~~--~~--~l~GI~S~g~~~~c~-~~~~p~vyt~Vs~~y~~WI~~~i  230 (232)
T d1orfa_         183 ---------------------------DSGSPLLC--EG--VFRGVTSFGLENKCG-DPRGPGVYILLSKKHLNWIIMTI  230 (232)
T ss_dssp             ---------------------------CTTCEEEE--TT--EEEEEEEECCTTCTT-CTTSCEEEEECCHHHHHHHHHHH
T ss_pred             ---------------------------cCCCeEEE--cC--EEEEEEEEECCCCCC-CCCCCcEEEEeeHHHHHHHHHHh
Confidence                                       99999999  54  5999999985 5698 678999999997 6999999988


Q ss_pred             c
Q psy15063        414 I  414 (417)
Q Consensus       414 ~  414 (417)
                      +
T Consensus       231 ~  231 (232)
T d1orfa_         231 K  231 (232)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-41  Score=310.64  Aligned_cols=217  Identities=28%  Similarity=0.472  Sum_probs=190.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeE---ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAI---RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i---~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|   ..++|+||||+++|||||   |||+..        ...|++|......... ..+.
T Consensus         1 i~~G~~a~~~---~~Pw~v~i~~~~~~~C~GtLIs~~~VLTa---AhCv~~--------~~~v~~g~~~~~~~~~-~~~~   65 (221)
T d1lo6a_           1 LVHGGPCDKT---SHPYQAALYTSGHLLCGGVLIHPLWVLTA---AHCKKP--------NLQVFLGKHNLRQRES-SQEQ   65 (221)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCCT--------TCEEEESCSBTTSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCCEEEEEECCcEEEEEEEEeCCEEEEC---eecccc--------ccceeeceeeecccCc-ccee
Confidence            5789999888   49999999   455999999999999999   999963        4679999988876665 6788


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      +.+.++++||+|+..+..||||||+|+.++.++++++|||||..... .+..++++|||.+....  .+..|+...++++
T Consensus        66 ~~~~~~~~~p~y~~~~~~~diAll~l~~~~~~~~~v~pi~l~~~~~~-~~~~~~~~Gwg~~~~~~--~~~~l~~~~~~~~  142 (221)
T d1lo6a_          66 SSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSA-NTTSCHILGWGKTADGD--FPDTIQCAYIHLV  142 (221)
T ss_dssp             EEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTTC-CCCEEEEEESSCCTTSS--CCSBCEEEEEEEE
T ss_pred             eeccccccCCCcccccccceeEEeecccccceeeeEEeccccccCCc-ccceEEEEecccccCCC--CCccceEEEEEEe
Confidence            88999999999999999999999999999999999999999986654 78999999999877544  6788999999999


Q ss_pred             ChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccC
Q psy15063        262 SNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALD  340 (417)
Q Consensus       262 ~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~  340 (417)
                      +.+.|++.+.....+.++|..... +...|.|                                                
T Consensus       143 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~c~g------------------------------------------------  174 (221)
T d1lo6a_         143 SREECEHAYPGQITQNMLCAGDEKYGKDSCQG------------------------------------------------  174 (221)
T ss_dssp             CHHHHHHHSTTTCCTTEEEEECTTTCCBCCTT------------------------------------------------
T ss_pred             cHHHHHHHcCCCccCCceeeeccccCCCCccC------------------------------------------------
Confidence            999999998876666666665544 8889999                                                


Q ss_pred             CeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        341 GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       341 ~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                            |+||||++  ++  +|+||+|||..+|. ..+.|+|||||+.|++||+++|+
T Consensus       175 ----------------------d~G~Pl~~--~~--~l~Gi~S~g~~~c~-~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         175 ----------------------DSGGPLVC--GD--HLRGLVSWGNIPCG-SKEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             ----------------------TTTCEEEE--TT--EEEEEEEECCSSCC-CSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ----------------------CCCCcEEE--CC--EEEEEEEEccCCCC-CCCCCeEEEEHHHHHHHHHHHhC
Confidence                                  99999998  55  49999999977787 68899999999999999999874

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-41  Score=312.78  Aligned_cols=227  Identities=27%  Similarity=0.462  Sum_probs=197.9

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|.|+      .++|+||||+++|||||   |||+....   ....+.+..+......... .
T Consensus         1 i~gG~~~~~~---~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~~---~~~~~~~~~~~~~~~~~~~-~   70 (237)
T d1xx9a_           1 IVGGTASVRG---EWPWQVTLHTTSPTQRHLCGGSIIGNQWILTA---AHCFYGVE---SPKILRVYSGILNQSEIKE-D   70 (237)
T ss_dssp             CBSCEECCTT---SSTTEEEEEEESSSEEEEEEEEEEETTEEEEC---GGGGTTCS---CGGGEEEEESCSBGGGCCT-T
T ss_pred             CCCCEECCCC---CCCcEEEEEECCCCccEEEEEEEEeCCEEEeC---eEeeeccc---Cccceeeeccccccccccc-c
Confidence            5789999888   499999984      23799999999999999   99997542   2356677777766665554 6


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|..++.||+|+.....+|||||+|++|+.+.++++|||++...... ....+.+.||+...... ...+.|++..
T Consensus        71 ~~~~~v~~~~~h~~~~~~~~~~diAll~L~~~v~~~~~~~pi~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~  149 (237)
T d1xx9a_          71 TSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRD-KIQNTLQKAK  149 (237)
T ss_dssp             CCCEEEEEEEECTTCSCTTTSCCCEEEEESSCCCCBTTBCCCBCCCTTCTTCCCSCEEEEESCCSSTTC-CCCSBCEEEE
T ss_pred             eEEEEeeEEEEecccccccccceeEEEEeccccccccccceEEecccccccccccccEEEEeecccccc-cCCCccEEEE
Confidence            678899999999999999999999999999999999999999998877655 67789999999877665 5778899999


Q ss_pred             EEEeChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        258 VKVLSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       258 v~i~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      +.++++++|+..+.. .+.+.++|++... ..+.|.|                                           
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~c~~~~~~~~~~c~g-------------------------------------------  186 (237)
T d1xx9a_         150 IPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKG-------------------------------------------  186 (237)
T ss_dssp             CCEECHHHHHHHTTTSCCCTTEEEECCTTCCCBCCTT-------------------------------------------
T ss_pred             EEEeCHHHHhhhhcCCCCCCceEEEecCCCCcccccC-------------------------------------------
Confidence            999999999988766 6789999998766 7889999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                 |+||||++..+++|+|+||+|++ .+|+ ..+.|++||||+.|++||+++|.
T Consensus       187 ---------------------------dsG~pl~~~~~~~~~l~Gi~s~g-~~~~-~~~~p~vft~v~~~~~WI~~~~~  236 (237)
T d1xx9a_         187 ---------------------------DSGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWILEKTQ  236 (237)
T ss_dssp             ---------------------------CTTCEEEEEETTEEEEEEEEEEE-SSSS-CTTCCEEEECGGGGHHHHHHHHC
T ss_pred             ---------------------------CccceeEEecCCEEEEEEEEEeC-CCCC-CCCCCEEEEEhHHhHhHHHHHHC
Confidence                                       99999999999999999999999 7787 68899999999999999999986

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-41  Score=314.66  Aligned_cols=226  Identities=25%  Similarity=0.441  Sum_probs=191.8

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEe
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRG  183 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~  183 (417)
                      |++|.+|.++   +|||+|+|. .++|+||||+++|||||   |||+.+...  ....+.|.+|..+....   ..+.+.
T Consensus         1 i~gG~~~~~g---~~Pw~v~i~~~~~C~GtLIs~~~VLTa---AhCv~~~~~--~~~~~~v~~~~~~~~~~---~~~~~~   69 (242)
T d1q3xa1           1 IYGGQKAKPG---DFPWQVLILGGTTAAGALLYDNWVLTA---AHAVYEQKH--DASALDIRMGTLKRLSP---HYTQAW   69 (242)
T ss_dssp             CBSCEECCTT---SSTTEEEECSSSSEEEEEETTTEEEEC---HHHHHHHHT--TTCCCEEEESCSBTTCS---CSEEEE
T ss_pred             CCCCEECCCC---CcCcEEEEcCCCEEEEEEEcCCEEEEC---hhhccCCCC--CcceEEEEeeeeeeccc---cccccc
Confidence            5789999998   599999994 36999999999999999   999965322  34677888887765543   447788


Q ss_pred             eeEEEeCCCCCCCC-CCCCeEEEEecCCcCCCCceeeeeCCCCCCcc---CCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        184 VRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQPVCLPQKGESF---IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       184 V~~i~iHP~Y~~~~-~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~---~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      |.++++||+|+..+ ..||||||||++|+.|+++++|||+|......   .+......||+....+.  .+..|+.+.+.
T Consensus        70 v~~i~~hp~y~~~~~~~~DiAll~L~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~l~~~~~~  147 (242)
T d1q3xa1          70 SEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGF--LARNLMYVDIP  147 (242)
T ss_dssp             EEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESSCCTTSS--CCSBCEEEEEE
T ss_pred             eeeeEEeeccccccccCccccccccCCCccccccEEEEeccccccccccccceeeeeeeccccccCc--cccceeeeecc
Confidence            99999999998765 57999999999999999999999998775543   56788889998876544  67889999999


Q ss_pred             EeChhhhhhhhhc------cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        260 VLSNARCSTVIEE------SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       260 i~~~~~C~~~~~~------~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      +++.+.|+..+..      .+.+.++|++... ..+.|.+                                        
T Consensus       148 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g----------------------------------------  187 (242)
T d1q3xa1         148 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRG----------------------------------------  187 (242)
T ss_dssp             EECHHHHHHHTSSTTSCTTCSCTTEEEECCSSCCSBCCTT----------------------------------------
T ss_pred             ccCHHHHHhhhhcccccCceeccceeeeeccCCCcccccc----------------------------------------
Confidence            9999999988754      4567889988766 7789999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                    |+||||++..  +++|+|+||+|||...|+ .++.|+|||||+.|++||+
T Consensus       188 ------------------------------dsGgpl~~~~~~~~~~~l~Gi~S~g~~~c~-~~~~p~vft~v~~~~~WI~  236 (242)
T d1q3xa1         188 ------------------------------DSGGALVFLDSETERWFVGGIVSWGSMNCG-EAGQYGVYTKVINYIPWIE  236 (242)
T ss_dssp             ------------------------------CTTCEEEEEETTTTEEEEEEEEEECCSSTT-CTTCCEEEEEGGGGHHHHH
T ss_pred             ------------------------------ccccceEEeeCCCCeEEEEEEEEeCCCCCC-CCCCCEEEEEHHHhHHHHH
Confidence                                          9999999876  679999999999977898 7889999999999999999


Q ss_pred             hhhc
Q psy15063        411 VNAI  414 (417)
Q Consensus       411 ~~~~  414 (417)
                      ++++
T Consensus       237 ~~v~  240 (242)
T d1q3xa1         237 NIIS  240 (242)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-41  Score=314.44  Aligned_cols=239  Identities=27%  Similarity=0.411  Sum_probs=197.1

Q ss_pred             CCccccccc-eeEecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEE
Q psy15063         93 CGDVSKERV-TYFKSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVL  164 (417)
Q Consensus        93 CG~~~~~~~-~~~~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V  164 (417)
                      ||......+ ..+|++|.+|.++   +|||+|.|.       .+.|+|+||+++|||||   |||+....     ....+
T Consensus         1 cg~~~~~~~~~~ri~gG~~a~~~---~~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTa---AhC~~~~~-----~~~~~   69 (251)
T d1pytd_           1 CGAPIFQPNLSARVVGGEDAIPH---SWPWQISLQYLRDNTWRHTCGGTLITPNHVLTA---AHCISNTL-----TYRVA   69 (251)
T ss_dssp             CCCCSSCCCSSSSCCSSCCCCTT---SSTTEEEEEEEETTEEEEEEEEEEEETTEEEEC---GGGCCTTC-----CEEEE
T ss_pred             CcCCCCCCCCCCeEECCEECCCC---CCCcEEEEEEEeCCCceeEEeEEEEcCCeEEEe---eecccccc-----cceee
Confidence            775444433 6679999999988   499999993       34799999999999999   99997531     11122


Q ss_pred             EeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccC
Q psy15063        165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTS  243 (417)
Q Consensus       165 ~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~  243 (417)
                      ........... ...+...|..+++||.|+.....|||||++|.+|+.|++.++||||+...... .+..+.++||+.+.
T Consensus        70 ~~~~~~~~~~~-~~~~~~~v~~i~~h~~y~~~~~~~diali~l~~pi~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~  148 (251)
T d1pytd_          70 LGKNNLEVEDE-AGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLY  148 (251)
T ss_dssp             ESCSBTTCSCC-SSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSS
T ss_pred             eeeeeeecccC-CCceEEeEEEEEEeeeecccccCCceeeeecCCCcccCceeEEEEeeccccCCCCceeEEEecCcccc
Confidence            22222222222 25678899999999999999999999999999999999999999999987655 78899999999988


Q ss_pred             CCCCCCCccceEEEEEEeChhhhhhhhhc--cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceee
Q psy15063        244 FPMGEPSPTLQKLEVKVLSNARCSTVIEE--SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRII  321 (417)
Q Consensus       244 ~~~~~~~~~L~~~~v~i~~~~~C~~~~~~--~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~  321 (417)
                      ... .....++...++++++..|...+..  .....++|++.....+.|.|                             
T Consensus       149 ~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~c~~~~~~~~~c~g-----------------------------  198 (251)
T d1pytd_         149 TNG-PIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNG-----------------------------  198 (251)
T ss_dssp             CCS-CCCSBCBCCEEECBCHHHHTSTTTTTTTCCTTEEEECCSCSSCCCCS-----------------------------
T ss_pred             CCC-cccceeceeeccccCHHHHhhhhcccccccCceEEeccCCCCccccC-----------------------------
Confidence            765 5667788889999999999986543  67888999998878899999                             


Q ss_pred             cccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEE
Q psy15063        322 LGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYT  400 (417)
Q Consensus       322 ~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt  400 (417)
                                                               |+||||++..+++|+|+||+||+. ..|+ ..+.|++||
T Consensus       199 -----------------------------------------d~G~Pl~~~~~~~~~L~Gi~S~~~~~~c~-~~~~p~vyt  236 (251)
T d1pytd_         199 -----------------------------------------DSGGPLNCQADGQWDVRGIVSFGSGLSCN-TFKKPTVFT  236 (251)
T ss_dssp             -----------------------------------------CTTCEEEEESSSSEEEEEEEEECCSSCTT-BTTBCEEEE
T ss_pred             -----------------------------------------CCCCceEEeeCCEEEEEEEEEECCCCCCC-CCCCCeEEE
Confidence                                                     999999999899999999999985 5687 678999999


Q ss_pred             ecccchhHHhhhhcc
Q psy15063        401 RVSEYIRWIHVNAIV  415 (417)
Q Consensus       401 ~Vs~~~~WI~~~~~~  415 (417)
                      ||+.|++||+++|++
T Consensus       237 ~v~~y~~WI~~~i~~  251 (251)
T d1pytd_         237 RVSAYIDWINQKLQL  251 (251)
T ss_dssp             EGGGGHHHHHHHTTC
T ss_pred             EHHHhHHHHHHhccC
Confidence            999999999999874

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-40  Score=307.06  Aligned_cols=219  Identities=26%  Similarity=0.496  Sum_probs=185.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeE--ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAI--RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i--~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.++.++   +|||+|.|  ..++|+||||+++|||||   |||+....        .............. .....
T Consensus         1 i~gG~~~~~~---~~Pw~v~l~~~~~~C~GtLIs~~~VLTa---AhCv~~~~--------~~~~~~~~~~~~~~-~~~~~   65 (223)
T d1j16a_           1 IVGGYTCQEN---SVPYQVSLNSGYHFCGGSLINDQWVVSA---AHCYKSRI--------QVRLGEHNINVLEG-NEQFV   65 (223)
T ss_dssp             CBSCEECCTT---SSTTEEEEESSSEEEEEEEEETTEEEEC---GGGCCSSC--------EEEESCSBTTSCCS-CCEEE
T ss_pred             CCCCEECCCC---CCCcEEEEeCCCEEEEEEEEcCCEEEeC---HHHCCCcC--------Cceeeeeeeccccc-cceee
Confidence            5789999888   49999999  445899999999999999   99997531        11122222222222 45778


Q ss_pred             eeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeC
Q psy15063        183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLS  262 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~  262 (417)
                      .+..+++||+|+.....+|||||+|++++.|+++++|||||..... .+..++++|||.+.......+..|+...+.+++
T Consensus        66 ~~~~~~~hp~y~~~~~~~diAll~L~~~v~~~~~~~picL~~~~~~-~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~  144 (223)
T d1j16a_          66 NAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLP  144 (223)
T ss_dssp             EEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCSSCCC-TTCEEEEEESSCCCSSSCCCCSBCEEEEEEEEC
T ss_pred             eeeeEEecCCCCccccceeEEEEEecCccccceeEEEEecCCcCCC-CCCEEEEEeeeeeeCCCccCcceeeEEEEEEEE
Confidence            8999999999999999999999999999999999999999987655 789999999998877664577889999999999


Q ss_pred             hhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        263 NARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       263 ~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      .++|+..+...+.+.++|++... +.+.|.|                                                 
T Consensus       145 ~~~C~~~~~~~~~~~~~C~~~~~~~~~~c~g-------------------------------------------------  175 (223)
T d1j16a_         145 QADCEASSSFIITDNMVCVGFLEGGKDACQG-------------------------------------------------  175 (223)
T ss_dssp             HHHHHSSSSCCCCTTEEEESCTTCSCBCCTT-------------------------------------------------
T ss_pred             hhHhhccccceeCCCceEEecCCCCCcccCC-------------------------------------------------
Confidence            99999887777889999998776 7789999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                           |+|+||++  ++  +|+||+|++ ..|. ..+.|++||||+.|++||+++|+.
T Consensus       176 ---------------------d~g~pl~~--~~--~L~Gi~s~~-~~~~-~~~~p~vft~v~~~~~WI~~~i~~  222 (223)
T d1j16a_         176 ---------------------DSGGPVVC--NG--ELQGIVSWG-YGCA-LPDNPGVYTKVCNYVDWIQDTIAA  222 (223)
T ss_dssp             ---------------------CTTCEEEE--TT--EEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             ---------------------ccCCcEEE--ee--EEEEEEEEc-cCCC-CCCCCEEEEEhHHhHHHHHHHHhc
Confidence                                 99999998  54  599999999 7888 678999999999999999999864

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.4e-41  Score=307.75  Aligned_cols=216  Identities=26%  Similarity=0.442  Sum_probs=190.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.++   +|||+|+|.       .++|+||||+++|||||   |||+.        ...+|++|.+++..... 
T Consensus         1 I~gG~~a~~g---e~P~~v~i~~~~~~~~~~~C~GtLI~~~~VLTa---AhC~~--------~~~~v~~G~~~~~~~~~-   65 (227)
T d1fi8a_           1 IIGGHEAKPH---SRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTA---AHCSG--------SKIQVTLGAHNIKEQEK-   65 (227)
T ss_dssp             CBSCEECCTT---SSTTEEEEEEECTTC-CCEEEEEEEETTEEEEC---GGGCC--------SEEEEEESCSBTTSCCT-
T ss_pred             CCCCEECCCC---CCCCEEEEEEEeCCCCceEEEEEEEeCCEEEEe---ccccc--------ccceeeeeecccccCCC-
Confidence            5789999998   599999993       24899999999999999   99985        34679999998877665 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      ..+...|.++++||.|+..+.+||||||+|++|+.|+++++||||+...... .+..+++.|||...... ..+..|+.+
T Consensus        66 ~~~~~~v~~i~~~~~~~~~~~~~diall~l~~~i~~~~~v~picl~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~l~~~  144 (227)
T d1fi8a_          66 MQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMG-KYSDTLQEV  144 (227)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTC-CBCSBCEEE
T ss_pred             CceEEEEEEEEecccccCccccchhhhhhccCceeeeeeEEEEEecccCcccCCCCEEEEEeeccccCCC-CCCceeeEE
Confidence            6788899999999999999999999999999999999999999999887655 78999999999988766 567889999


Q ss_pred             EEEEeChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcE
Q psy15063        257 EVKVLSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQ  334 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~  334 (417)
                      .+.+++++.|...+.. .....++|+.... ..+.|.|                                          
T Consensus       145 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~g------------------------------------------  182 (227)
T d1fi8a_         145 ELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASFRG------------------------------------------  182 (227)
T ss_dssp             EEEBCCHHHHHHHTTTTCCTTTEEEESCTTSCCBCCTT------------------------------------------
T ss_pred             EEEEEEchhhhhhhhcccccceeeeeeeccccCCCcCC------------------------------------------
Confidence            9999999999988776 5677788887766 7889999                                          


Q ss_pred             EEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        335 VAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       335 ~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                  |+||||++  +  ++|+||+|+| ..|.   +.|++||||+.|++||+++|+
T Consensus       183 ----------------------------dsGgPl~~--~--~~l~Gi~S~g-~~~~---~~p~vyt~v~~y~~WI~~~i~  226 (227)
T d1fi8a_         183 ----------------------------DSGGPLVC--K--KVAAGIVSYG-QNDG---STPRAFTKVSTFLSWIKKTMK  226 (227)
T ss_dssp             ----------------------------CTTSEEEE--T--TEEEEEEEEE-ETTC---CSCEEEEEGGGGHHHHHHHHC
T ss_pred             ----------------------------CcCCEEEE--C--CEEEEEEEEc-CCCC---CCCeEEEEHHHHHHHHHHHHc
Confidence                                        99999998  3  4699999999 6776   579999999999999999885

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-40  Score=308.74  Aligned_cols=225  Identities=28%  Similarity=0.521  Sum_probs=194.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      |++|.+|.++   +|||+|.|.    .+.|+||||+++|||||   |||+.+.      ..+.|.+|..+...... ..+
T Consensus         1 i~~G~~~~~~---e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~------~~~~v~~g~~~~~~~~~-~~~   67 (240)
T d1autc_           1 LIDGKMTRRG---DSPWQVVLLDSKKKLACGAVLIHPSWVLTA---AHCMDES------KKLLVRLGEYDLRRWEK-WEL   67 (240)
T ss_dssp             CBSCEECCTT---SCTTEEEEECTTSCEEEEEEEEETTEEEEC---GGGSSSC------SCCEEEESCCBTTCCCT-TCE
T ss_pred             CCCCEECCCC---CCCCEEEEEECCCCEEEEEEEEeCCEEEEC---ceeccCc------ccceeeccccccccccc-cce
Confidence            5789999998   599999994    33899999999999999   9999653      56789999988876665 778


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCC-----ccCCCeEEEEEcCccCCCCC----CCCc
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-----SFIGKRGHVVGWGVTSFPMG----EPSP  251 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~-----~~~~~~~~v~GWG~~~~~~~----~~~~  251 (417)
                      ...|.++++||.|+..+..||||||||++|+.|+++|+|||||....     ...+..+.++|||.+.....    ....
T Consensus        68 ~~~v~~i~~~~~~~~~~~~~DiAli~L~~~v~~~~~v~picL~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~  147 (240)
T d1autc_          68 DLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTF  147 (240)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSS
T ss_pred             eeeeeccccceeeeccccccceeEEEeCCcccCCcccccceeccCcccccccccCCCeEEEEeeccccCCCcccccccce
Confidence            89999999999999999999999999999999999999999987642     11678999999998765431    2355


Q ss_pred             cceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccccccc
Q psy15063        252 TLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGE  330 (417)
Q Consensus       252 ~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~  330 (417)
                      .++...+++++...|...+........+|..... ..+.|.|                                      
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------------------  189 (240)
T d1autc_         148 VLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEG--------------------------------------  189 (240)
T ss_dssp             BCEEEEEEEECHHHHHHHCSSCCCTTEEEECCTTCCCBCCTT--------------------------------------
T ss_pred             eeecceeeEEeehhhhhhcccccccceeeeccccccCCCcCC--------------------------------------
Confidence            6889999999999999988766666677766655 8889999                                      


Q ss_pred             CCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHh
Q psy15063        331 FPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       331 ~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                      |+|+||++..+++|+|+||+||| ..|+ ..+.|+|||||+.|++||+
T Consensus       190 --------------------------------d~G~pl~~~~~~~~~l~Gi~s~g-~~c~-~~~~p~vftrv~~y~~WI~  235 (240)
T d1autc_         190 --------------------------------DSGGPMVASFHGTWFLVGLVSWG-EGCG-LLHNYGVYTKVSRYLDWIH  235 (240)
T ss_dssp             --------------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEECGGGTHHHHH
T ss_pred             --------------------------------ccCceeEEcCCCCEEEEEEEEeC-CCCC-CCCCCeEEEEHHHHHHHHH
Confidence                                            99999999999999999999999 7887 6889999999999999999


Q ss_pred             hhhc
Q psy15063        411 VNAI  414 (417)
Q Consensus       411 ~~~~  414 (417)
                      ++|+
T Consensus       236 ~~i~  239 (240)
T d1autc_         236 GHIR  239 (240)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9985

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=307.93  Aligned_cols=225  Identities=26%  Similarity=0.397  Sum_probs=196.2

Q ss_pred             EecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        104 FKSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       104 ~~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      +|++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+..   ....+.|..+......... ..+
T Consensus         2 ri~gG~~a~~~---e~Pw~v~i~~~~~~~C~GtLIs~~~VLTA---AhCv~~~~---~~~~~~v~~~~~~~~~~~~-~~~   71 (240)
T d1mzaa_           2 EIIGGKEVSPH---SRPFMASIQYGGHHVCGGVLIDPQWVLTA---AHCQYRFT---KGQSPTVVLGAHSLSKNEA-SKQ   71 (240)
T ss_dssp             CCCCCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGSCTTC---SCSCEEEEESCSBSSSCCT-TCE
T ss_pred             EEECCEECCCC---CCCcEEEEEECCeEEEEEEEEeCCEEEEC---eEcccccC---CcceeEEEEeecccCcCCc-cce
Confidence            68999999998   499999995   45999999999999999   99997643   2356788888877776655 677


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      .+.+..++.||.|+.....+|||||+|++|+.|+++++|||||..........+.+.|||.+.......+..|+...+.+
T Consensus        72 ~~~~~~i~~h~~~~~~~~~~diAll~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~  151 (240)
T d1mzaa_          72 TLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTV  151 (240)
T ss_dssp             EEEEEEEEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEE
T ss_pred             eEeeeeeeeeccccccccCcceEEEeecceeeeeeccccccccccccccceeeEEEEEeccccCCcCcCCcccEEEEEEE
Confidence            88899999999999999999999999999999999999999998876667788999999998876656788999999999


Q ss_pred             eChhhhhhhhhc----cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        261 LSNARCSTVIEE----SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       261 ~~~~~C~~~~~~----~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      ++.++|+.....    ...+.++|++... ..+.|.|                                           
T Consensus       152 ~~~~~C~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~g-------------------------------------------  188 (240)
T d1mzaa_         152 LSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKG-------------------------------------------  188 (240)
T ss_dssp             CCHHHHTSTTTTTTTTCCCTTEEEEECTTSCCCCCTT-------------------------------------------
T ss_pred             ecHHHhhhhhhccCCcccccceEEeccCCCCccCccC-------------------------------------------
Confidence            999999876532    5678899998877 7889999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecc-cchhHHhhhhc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVS-EYIRWIHVNAI  414 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs-~~~~WI~~~~~  414 (417)
                                                 |+||||++  ++  +|+||+|+| ..|+ ..+.|+|||||+ +|++||+++|.
T Consensus       189 ---------------------------DsGgPl~~--~~--~l~Gi~S~g-~~c~-~~~~p~vftrvs~~y~~WI~~~i~  235 (240)
T d1mzaa_         189 ---------------------------DAGGPLIC--KG--VFHAIVSGG-HECG-VATKPGIYTLLTKKYQTWIKSNLV  235 (240)
T ss_dssp             ---------------------------CTTCEEEE--TT--EEEEEECSS-CCSS-CTTCCEEEEECCHHHHHHHHHHTC
T ss_pred             ---------------------------CCCCeEEE--CC--EEEEEEEeC-CCCC-CCCCCeEEEEEHHHHHHHHHHHcc
Confidence                                       99999998  54  599999999 8898 788999999998 68999999986

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-40  Score=306.55  Aligned_cols=219  Identities=27%  Similarity=0.498  Sum_probs=184.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|.|.   .++|+||||+++|||||   |||+...        ..+............ ....
T Consensus         1 i~~G~~~~~~---~~Pw~v~i~~~~~~~C~GtLIs~~~VLTa---AhC~~~~--------~~~~~~~~~~~~~~~-~~~~   65 (225)
T d1npma_           1 ILEGRECIPH---SQPWQAALFQGERLICGGVLVGDRWVLTA---AHCKKQK--------YSVRLGDHSLQSRDQ-PEQE   65 (225)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCCSS--------CEEEESCSBTTC--C-CCEE
T ss_pred             CCCCEECCCC---CCCCEEEEEECCcEEEEEEEEcCCEEEEc---hHhCccc--------cccccccccccccCC-Ccce
Confidence            5789999998   499999993   34999999999999999   9999653        234444444333333 4466


Q ss_pred             EeeeEEEeCCCC---CCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEE
Q psy15063        182 RGVRRVLFHSHF---HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEV  258 (417)
Q Consensus       182 ~~V~~i~iHP~Y---~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v  258 (417)
                      ..+..+..||.|   +.....||||||+|++|+.+++.++|+|||..... ....++++|||.+.......+..|+++.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~dIAll~L~~~~~~~~~~~~i~l~~~~~~-~~~~~~~~g~g~~~~~~~~~~~~l~~~~~  144 (225)
T d1npma_          66 IQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPK-VGQKCIISGWGTVTSPQENFPNTLNCAEV  144 (225)
T ss_dssp             ECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCCC-TTCEEEEEESSCSSSSSCCCCSBCEEEEE
T ss_pred             eeeeeeEEEEeeeccCcccchhhhhhhhcccccccccccccccccccccc-CCceEEEeccceecCCCCCCCCccEEEEE
Confidence            667778877755   55677899999999999999999999999988765 78899999999887666567789999999


Q ss_pred             EEeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEc
Q psy15063        259 KVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIA  338 (417)
Q Consensus       259 ~i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~  338 (417)
                      .+++++.|++.++..+.+.++|+...++.+.|.|                                              
T Consensus       145 ~~~~~~~C~~~~~~~~~~~~~C~~~~~~~~~c~g----------------------------------------------  178 (225)
T d1npma_         145 KIYSQNKCERAYPGKITEGMVCAGSSNGADTCQG----------------------------------------------  178 (225)
T ss_dssp             EECCHHHHHHHSTTTCCTTEEEEECTTCCBCCTT----------------------------------------------
T ss_pred             EEecHHHHhhhccCCcCCCEEEecCCCCCccccC----------------------------------------------
Confidence            9999999999998889999999998888899999                                              


Q ss_pred             cCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        339 LDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       339 ~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                              |+||||++  +  ++|+||+|+|...|+ ..+.|++||||+.|++||+++|+
T Consensus       179 ------------------------d~G~pl~~--~--~~l~Gi~S~g~~~c~-~~~~p~vyt~V~~~~~WI~~~i~  225 (225)
T d1npma_         179 ------------------------DSGGPLVC--D--GMLQGITSWGSDPCG-KPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             ------------------------CTTCEEEE--T--TEEEEEEEECCSSSC-BTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             ------------------------CCCceEEE--c--cEEEEEEEECCCCCC-CCCCCEEEEEHHHHHHHHHHHhC
Confidence                                    99999999  4  579999999977787 67889999999999999999875

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=100.00  E-value=2e-40  Score=305.52  Aligned_cols=222  Identities=28%  Similarity=0.479  Sum_probs=190.9

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|.|.   .++|+||||+++|||||   |||+...      ....+++|......... ..+.
T Consensus         1 i~gG~~a~~~---~~Pw~V~i~~~~~~~C~GtLIs~~~VLTa---AhCv~~~------~~~~~~~g~~~~~~~~~-~~~~   67 (226)
T d1azza_           1 IVGGVEAVPN---SWPHQAALFIDDMYFCGGSLISPEWILTA---AHCMDGA------GFVDVVLGAHNIREDEA-TQVT   67 (226)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTTEEEEEEEEETTEEEEC---HHHHTTC------SCEEEEESCSBSSSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCcEEEEEEEeeCCEEEEC---hhhccCC------cceEEEeccceeccCCc-ceEE
Confidence            5788999888   599999994   45899999999999999   9999653      55778899888876665 6788


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      ..|.++++||+|+....++|||||+|++|+.++.+++||||+..... ....+.++|||.+..........|++..++++
T Consensus        68 ~~v~~i~~~~~y~~~~~~~diAll~l~~~~~~~~~~~pi~l~~~~~~-~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~  146 (226)
T d1azza_          68 IQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVG-VGTVVTPTGWGLPSDSALGISDVLRQVDVPIM  146 (226)
T ss_dssp             EEECCEEECTTCBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCCC-TTCEEEEEESSCSSTTCSSSCSBCEECCEEEE
T ss_pred             EEeeeeeeccccccccccchhhhhhcCCccceeeccccccccccccc-cccceeeecccccCCCcCccccEeEEEEEEEE
Confidence            89999999999999999999999999999999999999999998766 78899999999998766567789999999999


Q ss_pred             ChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        262 SNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       262 ~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      +.++|+..+... ...+.|.....+.+.|.|                                                 
T Consensus       147 ~~~~C~~~~~~~-~~~~~~~~~~~~~~~c~g-------------------------------------------------  176 (226)
T d1azza_         147 SNADCDAVYGIV-TDGNICIDSTGGKGTCNG-------------------------------------------------  176 (226)
T ss_dssp             CHHHHHHHHSCC-CTTEEEECCTTTCBCCTT-------------------------------------------------
T ss_pred             eHHHhhhhhCcc-cccceeccccCCCccccC-------------------------------------------------
Confidence            999999988744 445555555557899999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                           |+||||++  ++  +|+||+||+ ..|.-..+.|+|||||+.|++||+++|+++
T Consensus       177 ---------------------dsG~Pl~~--~~--~l~Gi~S~g-~~~~~~~~~p~v~t~v~~y~~WI~~~~g~~  225 (226)
T d1azza_         177 ---------------------DSGGPLNY--NG--LTYGITSFG-AAAGCEAGYPDAFTRVTYFLDWIQTQTGIT  225 (226)
T ss_dssp             ---------------------CTTCEEEE--TT--EEEEEEEEE-ETTCTTSCCCEEEEESGGGHHHHHHHHCCC
T ss_pred             ---------------------CcCCCEEE--cC--EEEEEEEEe-CCCCCCCCCCEEEEEHHHhHHHHHHHhCCC
Confidence                                 99999998  54  599999999 444313778999999999999999999986

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-41  Score=312.05  Aligned_cols=225  Identities=24%  Similarity=0.391  Sum_probs=187.7

Q ss_pred             ecCCCCCCCCCCCCCcceeeE-ccccceEEEeeCCeEEeeccceeeecCCCCC-CCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAI-RQDVCAVRIEFEKVNLARKVGGVCDIDQLRD-TPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i-~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~-~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.+|.++   +|||+|.+ ..+.|+||||+++|||||   |||+.+.... .....+.|++|.++.....  ..+.+
T Consensus         1 i~~G~~~~~~---~~Pw~v~i~~~~~C~GtLIs~~~VLTa---AhC~~~~~~~~~~~~~~~v~~g~~~~~~~~--~~~~~   72 (240)
T d2qy0b1           1 IIGGQKAKMG---NFPWQVFTNIHGRGGGALLGDRWILTA---AHTLYPKEHEAQSNASLDVFLGHTNVEELM--KLGNH   72 (240)
T ss_dssp             CBSCEECCTT---SSTTEEEEESSSEEEEEEETTTEEEEC---HHHHSCSSCCC----CCEEEESCSBHHHHH--HHCCC
T ss_pred             CCCCEECCCC---CcCCEEEECCCceEEEEEEcCCEEEEC---hHhCCCcccccccccceeeeeeeccccccC--CcceE
Confidence            5789999998   59999988 345899999999999999   9999765332 2446789999987654322  23556


Q ss_pred             eeeEEEeCCCCCCC---CCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEE
Q psy15063        183 GVRRVLFHSHFHPF---VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEV  258 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~---~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v  258 (417)
                      .|.+|++||+|+..   ...+|||||+|++|+.++++++|||++...... .+..+++.|||....   ..+..++.+++
T Consensus        73 ~v~~i~vhp~y~~~~~~~~~~DiAll~L~~pi~~~~~v~pi~l~~~~~~~~~~~~~~~~g~g~~~~---~~~~~~~~~~~  149 (240)
T d2qy0b1          73 PIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE---KIAHDLRFVRL  149 (240)
T ss_dssp             CEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSS---SCCSBCEEEEE
T ss_pred             EEEEEEeccccccccccccCCCceEEecCCccccccccceEEecccccccccCceeeecccccccc---cccccceEEEE
Confidence            79999999999875   356899999999999999999999999887655 788999999998774   35678899999


Q ss_pred             EEeChhhhhhhhhc-----cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        259 KVLSNARCSTVIEE-----SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       259 ~i~~~~~C~~~~~~-----~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      .+++...|+..+..     .+.+.++|+.... ..+.|.|                                        
T Consensus       150 ~~~~~~~C~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g----------------------------------------  189 (240)
T d2qy0b1         150 PVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQG----------------------------------------  189 (240)
T ss_dssp             EBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTT----------------------------------------
T ss_pred             EEcCHHHHHHHhhccccCCceecceEEeccCCccceeecc----------------------------------------
Confidence            99999999987654     4678999998776 7889999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee--CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ--DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~--~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                    |+|+||++..  .++|+|+||+||| .+|.   ..|+|||||+.|++||+
T Consensus       190 ------------------------------dsG~pl~~~~~~~~~~~l~Gi~S~g-~~c~---~~p~vft~v~~~~~WI~  235 (240)
T d2qy0b1         190 ------------------------------DSGGVFAVRDPNTDRWVATGIVSWG-IGCS---RGYGFYTKVLNYVDWIK  235 (240)
T ss_dssp             ------------------------------CTTCEEEEECTTTCCEEEEEEEEEC-SSSS---SSCEEEEEGGGGHHHHH
T ss_pred             ------------------------------ccccceEEEeCCCCeEEEEEEEEEC-CCCC---CCCeEEEEHHHHHHHHH
Confidence                                          9999999987  3579999999999 8898   34899999999999999


Q ss_pred             hhhc
Q psy15063        411 VNAI  414 (417)
Q Consensus       411 ~~~~  414 (417)
                      ++|+
T Consensus       236 ~~i~  239 (240)
T d2qy0b1         236 KEME  239 (240)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            9985

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=6.4e-40  Score=301.33  Aligned_cols=218  Identities=27%  Similarity=0.460  Sum_probs=185.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc--cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR--QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~--~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.++.+++   |||+|+|.  .++|+||||+++|||||   |||+.+.      ....+..+  ....... .....
T Consensus         1 i~gG~~~~~~~---~Pw~v~l~~~~~~C~GtLIs~~~VLTA---AhCv~~~------~~~~~~~~--~~~~~~~-~~~~~   65 (222)
T d1hj8a_           1 IVGGYECKAYS---QPHQVSLNSGYHFCGGSLVNENWVVSA---AHCYKSR------VEVRLGEH--NIKVTEG-SEQFI   65 (222)
T ss_dssp             CBSCEECCTTS---CTTEEEEESSSEEEEEEEEETTEEEEC---GGGCCSS------CEEEESCS--BTTSCCS-CCEEE
T ss_pred             CCCCEECCCCC---CCeEEEEECCCEEEEEEEeeCCEEEeC---ceecccc------cCcceeec--cccccCC-ccccc
Confidence            57899999984   99999993  45899999999999999   9999753      22233222  2222222 44666


Q ss_pred             eeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeC
Q psy15063        183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLS  262 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~  262 (417)
                      .+..++.||.|+.....+|||||+|++|+.+++.++|||||..... .+..+++.|||.+.... .....|+.+.+.+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~diALl~l~~~v~~~~~~~picl~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~  143 (222)
T d1hj8a_          66 SSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNTMSST-ADSNKLQCLNIPILS  143 (222)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSSCCC-TTCEEEEEESSCCCCSS-CCTTBCEEEEEEBCC
T ss_pred             cceEEEecccccccccCCcEEEEecccceeeeceeEEEECCCcCCC-CCceEEEEecccccccc-ccccccEEEEEEEeC
Confidence            6788999999999999999999999999999999999999987655 78999999999987655 567889999999999


Q ss_pred             hhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        263 NARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       263 ~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      .++|+..++..+.+.+||++... +.+.|.|                                                 
T Consensus       144 ~~~C~~~~~~~~~~~~~C~~~~~~~~~~c~g-------------------------------------------------  174 (222)
T d1hj8a_         144 YSDCNNSYPGMITNAMFCAGYLEGGKDSCQG-------------------------------------------------  174 (222)
T ss_dssp             HHHHHHHSTTCCCTTEEEESCTTSSCBCCTT-------------------------------------------------
T ss_pred             HHHHhhhcccccccceEEEccCCCCcccccC-------------------------------------------------
Confidence            99999999888999999998776 6789999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                           |+||||++  ++  +|+||+||| .+|+ ..+.|++||||+.|++||+++|+.
T Consensus       175 ---------------------dsGgPl~~--~~--~l~Gi~S~g-~~~~-~~~~p~v~t~v~~y~~WI~~~i~~  221 (222)
T d1hj8a_         175 ---------------------DSGGPVVC--NG--ELQGVVSWG-YGCA-EPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             ---------------------CTTCEEEE--TT--EEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             ---------------------CcccEEEE--CC--EEEEEEEEe-cCCC-CCCCCEEEEEHHHHHHHHHHHHHh
Confidence                                 99999998  54  499999999 7888 788999999999999999999863

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-40  Score=303.91  Aligned_cols=224  Identities=25%  Similarity=0.427  Sum_probs=191.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      |++|.+|.++   +|||+|+|.    .++|+||||+++|||||   |||+.+.      ....+............ ..+
T Consensus         1 i~gG~~a~~~---~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTa---AhCv~~~------~~~~~~~~~~~~~~~~~-~~~   67 (233)
T d2p3ub1           1 IVGGQECKDG---ECPWQALLINEENEGFCGGTILSEFYILTA---AHCLYQA------KRFKVRVGDRNTEQEEG-GEA   67 (233)
T ss_dssp             CBSSEECCTT---SCTTEEEEECTTSCEEEEEEECSSSEEEEC---GGGGGSC------SSCEEEESCSBTTSCCS-CCE
T ss_pred             CCCCEECCCC---CCCcEEEEEecCCCeEEEEEEEeCCEEEEC---ceecccc------cccccccccccccccCC-Cce
Confidence            5789999988   499999984    34899999999999999   9999764      33445444444433333 567


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc----CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~----~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      .+.+..+++||+|+.....+|||||+|++|+.|+++++|+|||......    ....+.+.||+...... .....++..
T Consensus        68 ~~~~~~i~~h~~~~~~~~~~diAll~L~~pv~~~~~v~pi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  146 (233)
T d2p3ub1          68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKG-RQSTRLKML  146 (233)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTS-CBCSBCEEE
T ss_pred             eecceeEEEeecccccccccceeeeecccceeecccccccccCCcccccccccccceEEEecCCccccCC-Ccccccccc
Confidence            8889999999999999999999999999999999999999999864421    56778999999877655 566788999


Q ss_pred             EEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        257 EVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      .+.+++.+.|...+...+...++|+.... ....|.|                                           
T Consensus       147 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------------------------------  183 (233)
T d2p3ub1         147 EVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQG-------------------------------------------  183 (233)
T ss_dssp             EEEBCCHHHHHHHCSSCCCTTEEEESCSSSSCBCCTT-------------------------------------------
T ss_pred             ccccccchhhhcccCceEeecceeeecccccCCCcCC-------------------------------------------
Confidence            99999999999988877788899888766 7889999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                 |+||||++..+++|+|+||+||| ..|+ ..+.|++||||+.|++||+++|+
T Consensus       184 ---------------------------dsGgpl~~~~~~~~~L~Gv~s~g-~~c~-~~~~p~vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         184 ---------------------------DSGGPHVTRFKDTYFVTGIVSWG-EGCA-RKGKYGIYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             ---------------------------TTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             ---------------------------CcccccEEecCCeEEEEEEEEEC-CCCC-CCCCCEEEEEHHHHHHHHHHHhC
Confidence                                       99999999999999999999999 7888 67899999999999999999874

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-40  Score=305.56  Aligned_cols=225  Identities=29%  Similarity=0.522  Sum_probs=188.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|.|.      .+.|+||||+++|||||   |||+.+...  ....+.+.++......    .
T Consensus         1 i~gG~~a~~~---e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~~~--~~~~~~~~~~~~~~~~----~   68 (243)
T d2fpza1           1 IVGGQEAPRS---KWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTA---AHCVGPDVK--DLAALRVQLREQHLYY----Q   68 (243)
T ss_dssp             CBSCEECCTT---SCTTEEEEEECSSSCEEEEEEEEEETTEEEEC---HHHHCSBCC--CGGGEEEECCCSBTTT----T
T ss_pred             CCCCEECCCC---CCCcEEEEEECCCcccEEEEEEEEeCCEEEEC---ceeccCCCC--cceeEEEEeeeccccc----c
Confidence            5789999998   599999993      23799999999999999   999976432  2355566665544432    4


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCC-CCCccceEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMG-EPSPTLQKL  256 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~-~~~~~L~~~  256 (417)
                      .+.+.|.++++||+|+.....||||||+|.+|+.++++++|+|||...... .+..+.+.+||.+..... ..+..|+.+
T Consensus        69 ~~~~~i~~i~~hp~~~~~~~~~diAli~L~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~  148 (243)
T d2fpza1          69 DQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQV  148 (243)
T ss_dssp             CCCEEEEEEEECTTCSCTTTSCCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEE
T ss_pred             cEEEeeeeeeccccccccccccchhhhcccCccccceeEEEeecCchhhccCCCceeEEEecccccCCCcCCCCcEeEEE
Confidence            577889999999999999999999999999999999999999999877655 788999999998876542 246679999


Q ss_pred             EEEEeChhhhhhhhhc---------cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccc
Q psy15063        257 EVKVLSNARCSTVIEE---------SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEAD  327 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~---------~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~  327 (417)
                      .+++++...|+..+..         .....++|++. .+.+.|.|                                   
T Consensus       149 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g-----------------------------------  192 (243)
T d2fpza1         149 KVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGN-TRRDSCQG-----------------------------------  192 (243)
T ss_dssp             EEEEECHHHHHHHHHTTBCSCTTSCSSCTTEEEECC-SSSBCCTT-----------------------------------
T ss_pred             EEeecCHHHhhhhhhcccccCCccceeeeeeEecCC-CCCCCccC-----------------------------------
Confidence            9999999999988753         23455666554 37889999                                   


Q ss_pred             cccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchh
Q psy15063        328 IGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIR  407 (417)
Q Consensus       328 ~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~  407 (417)
                                                         |+||||++..+++|+|+||+|++ ..|+ ..+.|.|||||+.|++
T Consensus       193 -----------------------------------dsGgpl~~~~~~~~~L~Gi~s~~-~~~~-~~~~p~v~t~v~~y~~  235 (243)
T d2fpza1         193 -----------------------------------DSGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLD  235 (243)
T ss_dssp             -----------------------------------CTTCEEEEEETTEEEEEEEEEEC-SSSS-BTTBCEEEEEGGGGHH
T ss_pred             -----------------------------------CCCCeEEEeeCCEEEEEEEEEEC-CCCC-CCCCCEEEEEHHHHHH
Confidence                                               99999999999999999999999 7887 6889999999999999


Q ss_pred             HHhhhhc
Q psy15063        408 WIHVNAI  414 (417)
Q Consensus       408 WI~~~~~  414 (417)
                      ||+++|+
T Consensus       236 WI~~~i~  242 (243)
T d2fpza1         236 WIHHYVP  242 (243)
T ss_dssp             HHTTTSC
T ss_pred             HHHHHhC
Confidence            9999885

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=311.27  Aligned_cols=226  Identities=23%  Similarity=0.355  Sum_probs=184.9

Q ss_pred             cceeEecCCCCCCCCCCCCCcceeeEccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCc
Q psy15063        100 RVTYFKSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSH  179 (417)
Q Consensus       100 ~~~~~~~~g~~a~~~~~~~~PW~v~i~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~  179 (417)
                      ....+|++|.++.++   +|||+|.+..++|+|+||+++|||||   |||+.+.      ....+++|..++........
T Consensus         9 ~~~~ri~gG~~~~~~---~~Pw~v~l~~~~C~GtLIs~~~VLTa---AhCv~~~------~~~~v~~g~~~~~~~~~~~~   76 (259)
T d1elva1           9 EEKQRIIGGSDADIK---NFPWQVFFDNPWAGGALINEYWVLTA---AHVVEGN------REPTMYVGSTSVQTSRLAKS   76 (259)
T ss_dssp             -----CBTCEECCGG---GSTTEEEEETTEEEEEEEETTEEEEC---HHHHTTC------SSCCEECSCSBCC-------
T ss_pred             CCCCceECCEECCCC---CcceEEEeCCceEEEEEEeCCEEEec---ccccccc------cceeEEeeeeeeeccccccc
Confidence            345579999999888   59999999999999999999999999   9999764      44568888887665443356


Q ss_pred             EEEeeeEEEeCCCCC-------CCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc---CCCeEEEEEcCccCCCCCCC
Q psy15063        180 VRRGVRRVLFHSHFH-------PFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF---IGKRGHVVGWGVTSFPMGEP  249 (417)
Q Consensus       180 q~~~V~~i~iHP~Y~-------~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~---~~~~~~v~GWG~~~~~~~~~  249 (417)
                      +.+.|.++++||+|.       ..+.+||||||||.+|+.++++++|+|++......   .+..+++.||+.+....  .
T Consensus        77 ~~~~v~~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~  154 (259)
T d1elva1          77 KMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRD--R  154 (259)
T ss_dssp             CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSCS--S
T ss_pred             ccccceeEeecceeecccccccCCCcccceeeeecccceehhcccCceeeccCccccccccceEEEEeccccccccc--c
Confidence            778899999999995       34567999999999999999999999998766532   68899999999877654  5


Q ss_pred             CccceEEEEEEeChhhhhhhhhc---------cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCccee
Q psy15063        250 SPTLQKLEVKVLSNARCSTVIEE---------SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRI  320 (417)
Q Consensus       250 ~~~L~~~~v~i~~~~~C~~~~~~---------~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~  320 (417)
                      ...++...+.+++...|...+..         .+.+.++|++...+.+.|.|                            
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g----------------------------  206 (259)
T d1elva1         155 AVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKG----------------------------  206 (259)
T ss_dssp             CSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECSTTCBCCTT----------------------------
T ss_pred             ccccccceeeEechhhceeeeecccccccccceeecceeeccCCCCCccCCC----------------------------
Confidence            66789999999999999866533         36888999998878899999                            


Q ss_pred             ecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee---CCeEEEEeEEEEcCCCccccCCCCe
Q psy15063        321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ---DGYHVLAGIVSYGVTGCAIMPSYPD  397 (417)
Q Consensus       321 ~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~---~g~~~l~GI~S~g~~~C~~~~~~p~  397 (417)
                                                                |+||||++..   +++|+|+||+||+ .+|+    .|.
T Consensus       207 ------------------------------------------DsGgPl~~~~~~~~~~~~l~Gi~S~~-~~c~----~p~  239 (259)
T d1elva1         207 ------------------------------------------DSGGAFAVQDPNDKTKFYAAGLVSWG-PQCG----TYG  239 (259)
T ss_dssp             ------------------------------------------CTTCEEEEECSSCTTCEEEEEEEEEC-SSTT----SEE
T ss_pred             ------------------------------------------CcCCeEEEEecCCCcEEEEEEEEEeC-CCCC----Cce
Confidence                                                      9999999875   4589999999999 7897    689


Q ss_pred             EEEecccchhHHhhhhc
Q psy15063        398 LYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       398 vyt~Vs~~~~WI~~~~~  414 (417)
                      |||||+.|++||++++.
T Consensus       240 vft~V~~~~~WI~~~i~  256 (259)
T d1elva1         240 LYTRVKNYVDWIMKTMQ  256 (259)
T ss_dssp             EEEEGGGGHHHHHHHHH
T ss_pred             EEeEHHHHHHHHHHHHH
Confidence            99999999999999885

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-40  Score=303.90  Aligned_cols=226  Identities=28%  Similarity=0.502  Sum_probs=191.7

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|.   .++|+||||+++|||||   |||+.+.      ....+............ ....
T Consensus         1 i~gG~~~~~~---~~Pw~v~i~~~~~~~C~GtLI~~~~VLTa---AhCv~~~------~~~~~~~~~~~~~~~~~-~~~~   67 (235)
T d1rfna_           1 VVGGEDAKPG---QFPWQVVLNGKVDAFCGGSIVNEKWIVTA---AHCVETG------VKITVVAGEHNIEETEH-TEQK   67 (235)
T ss_dssp             CBTCEECCTT---SSTTEEEEESSSTTCEEEEEEETTEEEEC---GGGCCTT------CCCEEEESCSBSSSCCS-CCEE
T ss_pred             CCCCEECCCC---CcCCEEEEecCCCEEEEEEEeeCCEEEEC---hhhcCCC------CceEEEEeecccccCCC-Ccce
Confidence            5789999988   499999994   44899999999999999   9999754      33345555554444443 5677


Q ss_pred             EeeeEEEeCCCCCCC--CCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc---CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        182 RGVRRVLFHSHFHPF--VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF---IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~--~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~---~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      +.+.++.+||+|+..  ...+|||||||++|+.++..++|+|||......   .+..+.+.||+...... ...+.|+++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~  146 (235)
T d1rfna_          68 RNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKG-RSALVLQYL  146 (235)
T ss_dssp             EEEEEEEECTTCBTTTBSSTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHTTSEEEEEESCBSSTTS-CBCSBCEEE
T ss_pred             eeeeEEeeccCCCCCcCccCceEEEEEeCCCccCCCccceeeeccccccccccccceEEEeccccccccc-cccCcceEE
Confidence            889999999999764  567999999999999999999999999765432   67889999999888765 667789999


Q ss_pred             EEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        257 EVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      .+.++++..|...+...+.+..+|+.... ..+.|.|                                           
T Consensus       147 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------------------------------  183 (235)
T d1rfna_         147 RVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQG-------------------------------------------  183 (235)
T ss_dssp             EEEBCCHHHHHHHCSSCCCTTEEEESCSSCSCBCCTT-------------------------------------------
T ss_pred             EEecccccccccccCceecCCeeEeecCCCCccccCC-------------------------------------------
Confidence            99999999999888777777777777665 7889999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                 |+||||++..+++|+|+||+||| ..|+ ..+.|.+||||+.|++||+++|++
T Consensus       184 ---------------------------dsGgpl~~~~~~~~~l~Gi~s~g-~~~~-~~~~p~vyt~v~~~~~WI~~~~~~  234 (235)
T d1rfna_         184 ---------------------------DSGGPHVTEVEGTSFLTGIISWG-EECA-MKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             ---------------------------CTTCEEEEESSSCEEEEEEEEEE-SSSS-CTTCCEEEEEGGGTHHHHHHHHCC
T ss_pred             ---------------------------CCCceeEEecCCeEEEEEEEEeC-CCCC-CCCCCEEEEEHHHHHHHHHHHhcC
Confidence                                       99999999989999999999999 7888 678999999999999999999998


Q ss_pred             C
Q psy15063        416 T  416 (417)
Q Consensus       416 ~  416 (417)
                      |
T Consensus       235 ~  235 (235)
T d1rfna_         235 T  235 (235)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-39  Score=298.97  Aligned_cols=219  Identities=24%  Similarity=0.471  Sum_probs=192.5

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc--cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR--QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRR  182 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~--~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~  182 (417)
                      |++|.+|.++   +|||+|.|.  .++|+||||+++|||||   |||+.+        ...+.+|......... ..+..
T Consensus         1 i~GG~~a~~~---~~Pw~v~l~~~~~~C~GtLIs~~~VLTa---AhC~~~--------~~~~~~~~~~~~~~~~-~~~~~   65 (223)
T d1hj9a_           1 IVGGYTCGAN---TVPYQVSLNSGYHFCGGSLINSQWVVSA---AHCYKS--------GIQVRLGEDNINVVEG-NEQFI   65 (223)
T ss_dssp             CCSCEECCTT---SSTTEEEEESSSEEEEEEEEETTEEEEC---GGGCCS--------SCEEEESCSSTTSCCS-CCEEE
T ss_pred             CCCCEECCCC---CCCeEEEEECCCEEEEEEEeeCCEEEeC---eeECCC--------cCcceecccccccccc-eeeee
Confidence            5788888888   599999993  34799999999999999   999964        3456788777665555 67888


Q ss_pred             eeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeC
Q psy15063        183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLS  262 (417)
Q Consensus       183 ~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~  262 (417)
                      .+..+++||.|+.....||||||+|++++.+++.++|+||+..... ....+.++|||.+.......+..|+...+.+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~cl~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~  144 (223)
T d1hj9a_          66 SASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS  144 (223)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCCC-TTCEEEEEESSCCCSSSCCCCSSCEEEEEECCC
T ss_pred             ceeeEEeccccccccccchhhhhhcccceeeeeeeecccccccccc-ccceEEEEeeccccCCCCCCCccceEEEEeecC
Confidence            8999999999999999999999999999999999999999987765 788899999999887665678899999999999


Q ss_pred             hhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        263 NARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       263 ~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      .++|++.+...+.+.++|+.... ..+.|.|                                                 
T Consensus       145 ~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~g-------------------------------------------------  175 (223)
T d1hj9a_         145 DSSCKSAYPGQITSNMFCAYGLEGKGDSCQG-------------------------------------------------  175 (223)
T ss_dssp             HHHHHHHSTTTCCTTEEECCCCCCCCCCCTT-------------------------------------------------
T ss_pred             HHHHHHHhCCcccccceEEeecCCCcccccC-------------------------------------------------
Confidence            99999999888889999998776 7789999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                           |+|+||++  +.  +|+||+||| .+|. ..+.|++||||+.|++||+++|..
T Consensus       176 ---------------------d~g~pl~~--~~--~L~Gi~S~g-~~c~-~~~~p~vyt~v~~~~~WI~~~i~~  222 (223)
T d1hj9a_         176 ---------------------DSGGPVVC--SG--KLQGIVSWG-SGCQ-AKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             ---------------------CTTCEEEE--TT--EEEEEEEEC-SCCC-CCCCCCEEEEGGGGHHHHHHHHTT
T ss_pred             ---------------------CCCceeEE--eC--EEEEEEEEc-CCCC-CCCCCEEEEEHHHHHHHHHHHHhc
Confidence                                 99999998  44  599999999 7887 688999999999999999999864

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=100.00  E-value=7.7e-40  Score=301.76  Aligned_cols=221  Identities=25%  Similarity=0.432  Sum_probs=187.5

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q  180 (417)
                      |++|.+|.++   +|||+|.|.    .++|+||||+++|||||   |||+...    ......+..+..  ..... ..+
T Consensus         1 i~gG~~a~~~---e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~----~~~~~~~~~~~~--~~~~~-~~~   67 (228)
T d1fxya_           1 IVGGYNCKDG---EVPWQALLINEENEGFCGGTILSEFYILTA---AHCLYQA----KRFKVRVGDRNT--EQEEG-GEA   67 (228)
T ss_dssp             CBSCEECCTT---SCTTEEEEECTTSCEEEEEEECSSSEEEEC---GGGTTSC----SSCEEEEECSCT--TTCCC-CEE
T ss_pred             CCCCEECCCC---CCCcEEEEEEcCCCeEEEEEEeeCCEEEEC---ceeeecc----cccccccccccc--cccCC-cce
Confidence            5789999999   499999984    34899999999999999   9999764    223333333332  22222 456


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      .+.+..++.||.|......+||||++|++++.++++++|||||..... .+..++++|||.+.......+..|+++.+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~diAl~~l~~~~~~~~~~~picL~~~~~~-~~~~~~~~gwg~~~~~~~~~~~~l~~~~~~~  146 (228)
T d1fxya_          68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPA-TGTKCLISGWGNTASSGADYPDELQCLDAPV  146 (228)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEESSCCCSSSCCCCSSCEEEEEEB
T ss_pred             eeeeeccceeeeeeccccccceeehhcccccccccccccccccccccc-cccEEEEEecccccCCCCCCCchhEEEEEEE
Confidence            777889999999999999999999999999999999999999988766 6889999999998876645678899999999


Q ss_pred             eChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        261 LSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       261 ~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      ++.++|+..++..+.+.++|+.... +.+.|.|                                               
T Consensus       147 ~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~g-----------------------------------------------  179 (228)
T d1fxya_         147 LSQAKCEASYPGKITSNMFCVGFLEGGKDSCQG-----------------------------------------------  179 (228)
T ss_dssp             CCHHHHHHHSTTTCCTTEEEESCTTCSCBCCTT-----------------------------------------------
T ss_pred             eCHHHHhhhcCCcccceeeEeecCCCCcccccC-----------------------------------------------
Confidence            9999999998888889999998766 7889999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                             |+||||++  ++  +|+||+|+| ..|. ..+.|.+||||+.|++||+++++.
T Consensus       180 -----------------------d~G~Pl~~--~~--~l~Gi~s~g-~~~~-~~~~p~vft~v~~~~~WI~~~i~~  226 (228)
T d1fxya_         180 -----------------------DSGGPVVC--NG--QLQGVVSWG-DGCA-QKNKPGVYTKVYNYVKWIKNTIAA  226 (228)
T ss_dssp             -----------------------CTTCEEEE--TT--EEEEEEEEC-SSSS-BTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             -----------------------ccCccEEE--eC--EEEEEEEEC-CCCC-CCCCCEEEEEHHHHHHHHHHHHHh
Confidence                                   99999999  54  599999999 7787 678999999999999999999875

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=299.04  Aligned_cols=215  Identities=27%  Similarity=0.470  Sum_probs=191.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|.|.      .++|+||||+++|||||   |||+.        ....|.+|......... .
T Consensus         1 IvgG~~a~~~---e~Pw~v~i~~~~~~~~~~C~GtlI~~~~VLTa---AhC~~--------~~~~v~~g~~~~~~~~~-~   65 (224)
T d1t32a1           1 IIGGRESRPH---SRPYMAYLQIQSPAGQSRCGGFLVREDFVLTA---AHCWG--------SNINVTLGAHNIQRREN-T   65 (224)
T ss_dssp             CBSCEECCTT---SSTTEEEEEESSSTTSCEEEEEEEETTEEEEC---GGGCC--------SCEEEEESCSBTTSCCT-T
T ss_pred             CCCCEECCCC---CCCCEEEEEEEcCCCCEEEEEEEEcCCEEEEe---EEccc--------ccccceeeeeeeecccc-c
Confidence            6789999998   599999984      34999999999999999   99985        45789999988877665 6


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+...|.+++.||+|+.....+||||++|..|+.++++++|+|||...... .+..+...|||......  ....|+++.
T Consensus        66 ~~~~~v~~i~~~~~~~~~~~~~diaL~~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~--~~~~l~~~~  143 (224)
T d1t32a1          66 QQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRR--GTDTLREVQ  143 (224)
T ss_dssp             CEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSSSC--CCSBCEEEE
T ss_pred             eeeecceeEEEeecccccccccceeEEeeccccccCcccCccccccccccCCCCCEEEEecccccccCC--Ccceeeeee
Confidence            778889999999999999999999999999999999999999999988765 78899999999876544  677899999


Q ss_pred             EEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        258 VKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       258 v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +.++++++|++.+...+.+.++|+.... ..+.|.|                                            
T Consensus       144 ~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~c~g--------------------------------------------  179 (224)
T d1t32a1         144 LRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKG--------------------------------------------  179 (224)
T ss_dssp             EEBCCHHHHHHHSTTCCTTTEEEECCTTSSCBCCTT--------------------------------------------
T ss_pred             eeecCHHHHHhhcCcccccccceeeccccccccccc--------------------------------------------
Confidence            9999999999999888889999998777 7889999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                |+||||++  ++  +|+||+||| ..|.   ..|++||||+.|++||+++|+
T Consensus       180 --------------------------dsGgPl~~--~~--~l~Gi~S~g-~~~~---~~p~vyt~v~~y~~WI~~~i~  223 (224)
T d1t32a1         180 --------------------------DSGGPLLC--NN--VAHGIVSYG-KSSG---VPPEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             --------------------------CTTCEEEE--TT--EEEEEEEEC-CTTC---CSCEEEEEGGGSHHHHHHHHC
T ss_pred             --------------------------CcCCeEEE--cC--EEEEEEEEc-CCCC---CCCcEEEEHHHhHHHHHHHHc
Confidence                                      99999998  55  599999999 6776   359999999999999999986

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=100.00  E-value=1.3e-39  Score=298.19  Aligned_cols=218  Identities=28%  Similarity=0.500  Sum_probs=187.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|.|.   .++|+||||+++|||||   |||+.....   ...+.+..+......    ..+.
T Consensus         1 i~gG~~a~~~---~~Pw~v~i~~~~~~~C~GtLIs~~~VLTa---AhCv~~~~~---~~~~~~~~~~~~~~~----~~~~   67 (222)
T d1eq9a_           1 IVGGKDAPVG---KYPYQVSLRLSGSHRCGASILDNNNVLTA---AHCVDGLSN---LNRLKVHVGTNYLSE----SGDV   67 (222)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEECSSSEEEEC---HHHHTTCSC---GGGEEEEESCSBTTS----CCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCCEEEEEEEEeCCEEEEC---ceecccccc---ccceeeecceecccc----Ccce
Confidence            5788889888   599999994   45999999999999999   999975422   234444444433322    5578


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      ..|.++++||+|+.....||||||+|++|+.++++++|+|||.......+..++++||+.+.... ..+..++...+..+
T Consensus        68 ~~v~~~~~h~~y~~~~~~~diAll~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~  146 (222)
T d1eq9a_          68 YDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGG-NTPNALQEIELIVH  146 (222)
T ss_dssp             EEEEEEEECTTCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTC-CCCSBCEEEEEEEE
T ss_pred             eeeeeEEEeecccccccccceehhhccCCcccccccccccccccccccccceeEEeeeeeecCCC-CCCccceEEEEEEe
Confidence            88999999999999999999999999999999999999999988766578899999999887765 67889999999999


Q ss_pred             ChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        262 SNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       262 ~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      +...|...+. .+.+.++|++.....+.|.+                                                 
T Consensus       147 ~~~~c~~~~~-~~~~~~~c~~~~~~~~~c~~-------------------------------------------------  176 (222)
T d1eq9a_         147 PQKQCERDQW-RVIDSHICTLTKRGEGACHG-------------------------------------------------  176 (222)
T ss_dssp             CHHHHHHHSS-SCCTTEEEECCCTTCBCCTT-------------------------------------------------
T ss_pred             chHHhccccc-cccCcceEeccCCCCCcccc-------------------------------------------------
Confidence            9999998765 67789999998878889999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                           |+||||++  ++  +|+||+||+ ..|+  .+.|++||||+.|++||+++|.
T Consensus       177 ---------------------d~G~pl~~--~~--~L~GI~s~~-~~c~--~~~p~vyt~v~~y~~WI~~~i~  221 (222)
T d1eq9a_         177 ---------------------DSGGPLVA--NG--AQIGIVSFG-SPCA--LGEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             ---------------------CTTCEEEE--TT--EEEEEEEEC-STTT--SSSCEEEEEGGGGHHHHHHTSC
T ss_pred             ---------------------CCcCCEEE--cC--EEEEEEEEC-CCCC--CCCCcEEEEHHHHHHHHHHHhc
Confidence                                 99999998  54  599999999 8998  6789999999999999999985

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-39  Score=300.00  Aligned_cols=221  Identities=24%  Similarity=0.463  Sum_probs=182.8

Q ss_pred             ecCCCCCCCCCCCCCcceeeE---ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCC-CCcE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAI---RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNE-TSHV  180 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i---~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~-~~~q  180 (417)
                      |++|.++...    +||+|+|   ..++|+||||+++|||||   |||+.+.    +...+.|++|.++...... ...+
T Consensus         1 ~~~g~~~~~~----~~w~vsi~~~~~~~C~GtLIs~~~VLTa---AhCv~~~----~~~~~~v~~g~~~~~~~~~~~~~~   69 (234)
T d1si5h_           1 VVNGIPTRTN----IGWMVSLRYRNKHICGGSLIKESWVLTA---RQCFPSR----DLKDYEAWLGIHDVHGRGDEKCKQ   69 (234)
T ss_dssp             CBSCEECSSC----CTTEEEEEESSSEEEEEEEEETTEEEEE---GGGCSSS----CGGGEEEEESCSBSSCSTTTTTCE
T ss_pred             CCCCEeCCCC----cCeEEEEEECCcEEEEEEEEeCCEEEEC---cCccCCC----CCccceEEEEeecccccccceeEE
Confidence            4678888543    8999999   345899999999999999   9999653    4577899999887665432 2445


Q ss_pred             EEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEE
Q psy15063        181 RRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK  259 (417)
Q Consensus       181 ~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  259 (417)
                      .+.+..+..||+|      ||||||||++|+.++++++|||||...... .+..+.+.||+......  .+..|+.+.+.
T Consensus        70 ~~~~~~~~~~~~~------~DIAll~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~l~~~~~~  141 (234)
T d1si5h_          70 VLNVSQLVYGPEG------SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLIN--YDGLLRVAHLY  141 (234)
T ss_dssp             EEEEEEEEECSST------TCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSS--CCCBCEEEEEE
T ss_pred             EEeeccccCCCcc------cceEEEeeccCccccccccccccccccccCCcceeEEEeccccccccc--ccceeEEEEee
Confidence            6666777777764      799999999999999999999999887765 67788888888766543  67789999999


Q ss_pred             EeChhhhhhhhhc--cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        260 VLSNARCSTVIEE--SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       260 i~~~~~C~~~~~~--~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +++...|...+..  .+.+.++|+.... ..+.|.|                                            
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~g--------------------------------------------  177 (234)
T d1si5h_         142 IMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEG--------------------------------------------  177 (234)
T ss_dssp             EECGGGTCC-------CCTTEEEEECSSSCCBCCTT--------------------------------------------
T ss_pred             ccchhHhhhhhccccccCCccEEEccCCcCCCCCcC--------------------------------------------
Confidence            9999999887655  6789999998776 7889999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhccC
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                                                |+||||++..+++|+|+||+|+| ..|+ ..+.|.+||||+.|++||+++|+-.
T Consensus       178 --------------------------dsG~pl~~~~~~~~~l~Gi~s~g-~~c~-~~~~p~vyt~i~~~~~WI~~~i~~~  229 (234)
T d1si5h_         178 --------------------------DYGGPLVCEQHKMRMVLGVIVPG-RGCA-IPNRPGIFVRVAYYAKWIHKIILTY  229 (234)
T ss_dssp             --------------------------CTTCEEEEECSSSEEEEEEECSC-SCSS-CTTCCEEEEEGGGGHHHHHHHHSSC
T ss_pred             --------------------------ccccceEEecCCeEEEEEEEEeC-CCCC-CCCCCEEEEEHHHHHHHHHHHhhcC
Confidence                                      99999999888899999999999 8998 6789999999999999999998754

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=1.1e-39  Score=300.28  Aligned_cols=215  Identities=25%  Similarity=0.398  Sum_probs=187.9

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.++   +|||+|+|.       .++|+||||+++|||||   |||+.        ..+.|++|......... 
T Consensus         1 i~gG~~a~~~---~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTa---A~C~~--------~~~~v~~g~~~~~~~~~-   65 (224)
T d3rp2a_           1 IIGGVESIPH---SRPYMAHLDIVTEKGLRVICGGFLISRQFVLTA---AHCKG--------REITVILGAHDVRKRES-   65 (224)
T ss_dssp             CBSCEECCTT---SCTTEEEEEEECTTSCEEEEEEEESSSSEEEEC---GGGCC--------SEEEEEESCSBTTSCCT-
T ss_pred             CCCCEECcCC---CCCCEEEEEEEeCCCCeEEEEEEEEcCCeeEec---ccccc--------cccEEEeccccccCccc-
Confidence            5789999998   599999994       25899999999999999   99984        45789999988777665 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEE
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKL  256 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~  256 (417)
                      ..+...|.++++||+|+.....||||||+|++|+.|++.++|+|||...... .+..+.+.|||...... .....|+++
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~~diall~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~  144 (224)
T d3rp2a_          66 TQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRD-PTSYTLREV  144 (224)
T ss_dssp             TCEEEEEEEEEECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTE-EECSBCEEE
T ss_pred             cceeeeEEEEEecccccccccccceeeeeecceeEeccccceEEecccccccCCCcEEEEeeeeeeecCC-CccceeeEE
Confidence            6788889999999999999999999999999999999999999999887655 78999999999888765 456689999


Q ss_pred             EEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        257 EVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       257 ~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      .+++++.+.|...+. .....++|+.... ....|.+                                           
T Consensus       145 ~~~~~~~~~C~~~~~-~~~~~~~~~~~~~~~~~~c~~-------------------------------------------  180 (224)
T d3rp2a_         145 ELRIMDEKACVDYRY-YEYKFQVCVGSPTTLRAAFMG-------------------------------------------  180 (224)
T ss_dssp             EEEEECGGGTTTTTC-CCTTTEEEECCTTSCCBCCTT-------------------------------------------
T ss_pred             EEEccCHHHhhhccc-ccccceeeeccCcccccCcCC-------------------------------------------
Confidence            999999999998776 5667788887666 7888999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                 |+||||++  +  ++|+||+||| ..|.   +.|.|||||+.|++||+++|+
T Consensus       181 ---------------------------d~G~Pl~~--~--~~l~Gi~S~g-~~~~---~~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         181 ---------------------------DSGGPLLC--A--GVAHGIVSYG-HPDA---KPPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             ---------------------------TTTCEEEE--T--TEEEEEEEEC-CTTC---CSCEEEEEHHHHHHHHHHHHC
T ss_pred             ---------------------------CcCCeEEE--c--CEEEEEEEEC-CCCC---CCCeEEEEHHHHHHHHHHHhC
Confidence                                       99999999  4  4699999999 5565   579999999999999999874

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-39  Score=299.99  Aligned_cols=220  Identities=27%  Similarity=0.471  Sum_probs=191.2

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.++.++   +|||+|.|.   .++|+||||+++|||||   |||+.+        ...|++|..+...... ..+.
T Consensus         1 i~gG~~~~~~---~~Pw~v~l~~~~~~~C~GtLIs~~~VLTa---AhCv~~--------~~~v~~~~~~~~~~~~-~~~~   65 (237)
T d1ao5a_           1 VVGGFNCEKN---SQPWQVAVYYQKEHICGGVLLDRNWVLTA---AHCYVD--------QYEVWLGKNKLFQEEP-SAQH   65 (237)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEEEETTEEEEC---TTCCCS--------SCEEEESCCBSSSCCS-SCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCcEEEEEEEeeCCEEEEC---HHHcCC--------CceEEEEecccccccc-ccEE
Confidence            5788899888   599999994   34899999999999999   999963        3578999888776655 6788


Q ss_pred             EeeeEEEeCCCCCCCC-----------CCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCC
Q psy15063        182 RGVRRVLFHSHFHPFV-----------LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPS  250 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~-----------~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~  250 (417)
                      +.+.+++.||.|+...           ..+|||||||++|+.|++.++|+|||..... .+..++++|||.........+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~~i~~~~~~~~i~lp~~~~~-~~~~~~~~g~~~~~~~~~~~~  144 (237)
T d1ao5a_          66 RLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPK-PGSKCLASGWGSITPTRWQKP  144 (237)
T ss_dssp             CCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCCC-TTCEEEEEESCCSSCC-CCCC
T ss_pred             EEEEEEeecccccccccccccccCccccccceeeeccCcccccccccceeccCCCCCc-ccceEEEeeeeeeccccccCC
Confidence            8899999999997542           3589999999999999999999999988765 788999999998877665677


Q ss_pred             ccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccc
Q psy15063        251 PTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIG  329 (417)
Q Consensus       251 ~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~  329 (417)
                      ..++...+..++...|...+...+.+.++|+.... +.+.|.|                                     
T Consensus       145 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~g-------------------------------------  187 (237)
T d1ao5a_         145 DDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRD-------------------------------------  187 (237)
T ss_dssp             SBCEEEEEEEECHHHHHHHCSSCCCTTEEEEECTTCSCBCCTT-------------------------------------
T ss_pred             ccceeeEEEEEehHHhhhhhcCCCCCCeEEEccCCCCCcccCC-------------------------------------
Confidence            88999999999999999998888889999998876 7889999                                     


Q ss_pred             cCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        330 EFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       330 ~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                                                       |+||||++  +  ++|+||+|||...|+ ..+.|.+||||+.|++||
T Consensus       188 ---------------------------------dsG~pl~~--~--~~l~Gi~S~g~~~c~-~~~~p~vft~V~~y~~WI  229 (237)
T d1ao5a_         188 ---------------------------------DSGGPLIC--D--GILQGTTSYGPVPCG-KPGVPAIYTNLIKFNSWI  229 (237)
T ss_dssp             ---------------------------------CTTCEEEE--T--TEEEEEEEECCSSTT-CTTCCEEEECGGGGHHHH
T ss_pred             ---------------------------------CCCCeeEE--c--cEEEEEEEEecCCCC-CCCCCeEEEEHHHHHHHH
Confidence                                             99999998  4  469999999977787 678899999999999999


Q ss_pred             hhhhcc
Q psy15063        410 HVNAIV  415 (417)
Q Consensus       410 ~~~~~~  415 (417)
                      +++|+-
T Consensus       230 ~~~i~~  235 (237)
T d1ao5a_         230 KDTMMK  235 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999853

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-39  Score=303.98  Aligned_cols=227  Identities=31%  Similarity=0.478  Sum_probs=186.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |.+|.+|.++   +|||+|.|.   .++|+||||+++|||||   |||+.+....    ...+..+......... ..+.
T Consensus         1 i~gG~~~~~~---e~Pw~v~I~~~~~~~C~GtLIs~~~VLTa---AhCv~~~~~~----~~~~~~~~~~~~~~~~-~~~~   69 (255)
T d1z8ga1           1 IVGGRDTSLG---RWPWQVSLRYDGAHLCGGSLLSGDWVLTA---AHCFPERNRV----LSRWRVFAGAVAQASP-HGLQ   69 (255)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEESSSSEEEEC---GGGCCGGGCC----GGGEEEEESCSBTTCT-TSEE
T ss_pred             CCCCEECCCC---CcCcEEEEEECCcEEEEEEEEeCCEEEEC---ceecCCCCCc----cceeeEeeeeecccCC-ccEE
Confidence            5688899888   599999994   34899999999999999   9999764222    1222222222222222 5688


Q ss_pred             EeeeEEEeCCC------CCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccce
Q psy15063        182 RGVRRVLFHSH------FHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       182 ~~V~~i~iHP~------Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                      +.+.+++.||.      |+.....||||||||++|+.|+++++|+||+...... .+..+.+.||+.+.... ..+..|+
T Consensus        70 ~~v~~~~~h~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~l~  148 (255)
T d1z8ga1          70 LGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYG-QQAGVLQ  148 (255)
T ss_dssp             ECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTS-CBCSBCE
T ss_pred             EEEEEEEEEeeeccccccccCCccccEEEEecCCccccCcccccceecccCcccCCCcEEEeeccccccCCC-cccceeE
Confidence            88999999998      5667778999999999999999999999999876654 78999999999887665 5678899


Q ss_pred             EEEEEEeChhhhhhhhhc--cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccC
Q psy15063        255 KLEVKVLSNARCSTVIEE--SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEF  331 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~~~~--~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~  331 (417)
                      .+.+++++++.|+..+..  .+.+.++|+.... +.+.|.|                                       
T Consensus       149 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~g---------------------------------------  189 (255)
T d1z8ga1         149 EARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQG---------------------------------------  189 (255)
T ss_dssp             EEEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTT---------------------------------------
T ss_pred             EEEEEEeCHHHhhhhhccCccccCcceEEecCCCCcccccC---------------------------------------
Confidence            999999999999876544  6778888887766 7789999                                       


Q ss_pred             CcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee----CCeEEEEeEEEEcCCCccccCCCCeEEEecccchh
Q psy15063        332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ----DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIR  407 (417)
Q Consensus       332 p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~----~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~  407 (417)
                                                     |+||||++..    +++|+|+||+||| .+|. .++.|+|||||+.|++
T Consensus       190 -------------------------------dsGgPl~~~~~~~~~~~~~l~Gi~S~g-~~c~-~~~~p~vft~V~~y~~  236 (255)
T d1z8ga1         190 -------------------------------DSGGPFVCEDSISRTPRWRLCGIVSWG-TGCA-LAQKPGVYTKVSDFRE  236 (255)
T ss_dssp             -------------------------------CTTCEEEEEECTTSSCEEEEEEEEEEB-SSSS-CTTCCEEEEEGGGGHH
T ss_pred             -------------------------------ccccceEEecCCCCCCcEEEEEEEEEC-CCCC-CCCCCEEEEEHHHhHH
Confidence                                           9999999886    5789999999999 7888 7889999999999999


Q ss_pred             HHhhhhcc
Q psy15063        408 WIHVNAIV  415 (417)
Q Consensus       408 WI~~~~~~  415 (417)
                      ||+++|..
T Consensus       237 WI~~~i~~  244 (255)
T d1z8ga1         237 WIFQAIKT  244 (255)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999853

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.3e-39  Score=296.71  Aligned_cols=216  Identities=29%  Similarity=0.508  Sum_probs=186.9

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|.|.      .++|+||||+++|||||   |||+.        ....+.+|......... .
T Consensus         1 i~gG~~a~~~---e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTa---AhC~~--------~~~~~~~~~~~~~~~~~-~   65 (224)
T d1eufa_           1 IIGGHEAKPH---SRPYMAFLLFKTSGKSHICGGFLVREDFVLTA---AHCLG--------SSINVTLGAHNIMERER-T   65 (224)
T ss_dssp             CBSCEECCTT---SCTTEEEEEEESSSSEEEEEEEEEETTEEEEC---GGGCC--------EEEEEEESCSBTTSCCT-T
T ss_pred             CCCCEECCCC---CCCCEEEEEEEcCCCcEEEEEEEEcCCEEEee---ceecc--------cccceeeeeeeecccCC-C
Confidence            5789999888   499999983      34799999999999999   99985        33567888877766655 6


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|+++++||+|+....+||||||||++|+.|++.+.|+|++...... .+..+.++|||.+.... .....++...
T Consensus        66 ~~~~~V~~i~~hp~~~~~~~~~DiAll~L~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~~  144 (224)
T d1eufa_          66 QQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNM-PSTDKLQEVD  144 (224)
T ss_dssp             CEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTC-CBCSBCEEEE
T ss_pred             cEEEEEEEEEECCccccccccccceeeeccceeEEeeeEeeeeeecccccccCCceEEEecccceeccc-cccccceeee
Confidence            788999999999999999999999999999999999999999999887655 78899999999988765 5677889999


Q ss_pred             EEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEE
Q psy15063        258 VKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVA  336 (417)
Q Consensus       258 v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~  336 (417)
                      +.++++.+|+..+.......+.|..... ..+.|.+                                            
T Consensus       145 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~c~~--------------------------------------------  180 (224)
T d1eufa_         145 LEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSG--------------------------------------------  180 (224)
T ss_dssp             EEBCCTHHHHTTCTTCCTTTEEEESCTTSCCBCCTT--------------------------------------------
T ss_pred             eccCCHHHHHHHhccccccceeeeeccccccccccC--------------------------------------------
Confidence            9999999999988776666666666544 7889999                                            


Q ss_pred             EccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        337 IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       337 ~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                                |+||||++  ++  +|+||+|+| .+|.   +.|.+||||+.|++||+++|+
T Consensus       181 --------------------------dsGgpl~~--~~--~l~Gi~s~g-~~~~---~~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         181 --------------------------DSGGPLVC--NG--VAQGIVSYG-RNDG---TTPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             --------------------------CTTCEEEE--TT--EEEEEEEEC-CTTC---CSCEEEEEGGGTHHHHHHHTC
T ss_pred             --------------------------CCCCeEEE--cC--EEEEEEEEc-CCCC---CCCeEEEEHHHHHHHHHHHhC
Confidence                                      99999998  54  699999999 6776   579999999999999999985

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-39  Score=295.06  Aligned_cols=222  Identities=25%  Similarity=0.394  Sum_probs=191.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc---ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ---DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~---~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|.|..   ++|+||||+++|||||   |||+.+.    ....+.+..+..+...... ..+.
T Consensus         1 I~gG~~~~~~---~~Pw~v~i~~~~~~~C~GtLIs~~~VLTa---AhCv~~~----~~~~~~v~~~~~~~~~~~~-~~~~   69 (228)
T d1bioa_           1 ILGGREAEAH---ARPYMASVQLNGAHLCGGVLVAEQWVLSA---AHCLEDA----ADGKVQVLLGAHSLSQPEP-SKRL   69 (228)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEEEETTEEEEC---GGGGGGC----SSSCEEEEESCSBSSSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCcEEEEEEEEeCCEEEEC---ceeeecc----ccceeeeeccccccccCCc-ceee
Confidence            5789999888   4999999844   4999999999999999   9999764    3355777777776665555 6788


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      ..|.++++||.|+....++|||||+|++|+.++++++|+|||...... .+..+.+.|||.+.... ..+..|+...+++
T Consensus        70 ~~v~~i~~~~~y~~~~~~~diAll~l~~~~~~~~~v~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~  148 (228)
T d1bioa_          70 YDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAG-RRPDSLQHVLLPV  148 (228)
T ss_dssp             EEEEEEEECTTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTCEEEEEESSCCSTTC-CCCSBCEEEEEEE
T ss_pred             ccceeeeeeecccCCCcccceehhhccccceeeeEEeeecccccccccccCceEEEecceeecCCC-CCCCcceEEEEEE
Confidence            889999999999999999999999999999999999999999877655 78899999999987655 5678899999999


Q ss_pred             eChhhhhhhhhc-cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        261 LSNARCSTVIEE-SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       261 ~~~~~C~~~~~~-~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      ++..+|...+.. .....++|+....+.+.|.|                                               
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------------------------------------  181 (228)
T d1bioa_         149 LDRATCNRRTHHDGAITERLMCAESNRRDSCKG-----------------------------------------------  181 (228)
T ss_dssp             ECHHHHHSTTTTTTCCCTTEEEECCSSCBCCTT-----------------------------------------------
T ss_pred             eCHHHHhhhhcccccccccceeecccCCCcccC-----------------------------------------------
Confidence            999999887655 55566777777778899999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhh
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA  413 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~  413 (417)
                                             |+|+||++  +  ++|+||+|||...|+ ..+.|++||||+.|++||+++|
T Consensus       182 -----------------------dsG~Pl~~--~--~~LvGi~S~g~~~c~-~~~~p~v~t~v~~~~~WI~~~i  227 (228)
T d1bioa_         182 -----------------------DSGGPLVC--G--GVLEGVVTSGSRVCG-NRKKPGIYTRVASYAAWIDSVL  227 (228)
T ss_dssp             -----------------------TTTCEEEE--T--TEEEEEECCSCCCSS-CTTSCEEEEEGGGGHHHHHHHH
T ss_pred             -----------------------CcCccEEE--c--CEEEEEEEECCCCCC-CCCCCEEEEEHHHHHHHHHHHh
Confidence                                   99999998  4  469999999977787 6788999999999999999986

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=9e-39  Score=295.65  Aligned_cols=226  Identities=29%  Similarity=0.464  Sum_probs=191.7

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.++.++   +|||+|.|.       .++|+||||+++|||||   |||+.+.      ....+.++.......+. 
T Consensus         1 i~gG~~~~~~---~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~------~~~~v~~~~~~~~~~~~-   67 (241)
T d1brup_           1 VVGGEDARPN---SWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTA---AHCISSS------RTYRVVLGRHSLSTNEP-   67 (241)
T ss_dssp             CBSCEECCTT---SSTTEEEEEEEETTEEEEEEEEEEEETTEEEEC---GGGCCTT------SCEEEEESCSBSSSCCT-
T ss_pred             CCCCEECCCC---CCCcEEEEEEcCCCcceEEeEEEEEeCCEEEEC---eEeeecc------cccceeeeccceeccCC-
Confidence            5789999998   499999993       23899999999999999   9999754      44566777666655544 


Q ss_pred             CcEEEeeeEEEeCCCCCCCC--CCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccce
Q psy15063        178 SHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~--~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                      ..+.+.|..+++||.|+...  .++|||||+|+.++.++..++|||++...... .+..+++.|||...... ..++.|+
T Consensus        68 ~~~~~~v~~~~~~~~~~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~  146 (241)
T d1brup_          68 GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNG-ASPDILQ  146 (241)
T ss_dssp             TCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTS-CCCSBCE
T ss_pred             CccccceeeeEEEeeeeeccccCCceEEEEecccccccccceeeeeeccccccCCCceeEEEEeeeccCCCC-cCCCcce
Confidence            66888899999999997664  45679999999999999999999999877655 78899999999988765 5678899


Q ss_pred             EEEEEEeChhhhhhhhhc--cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        255 KLEVKVLSNARCSTVIEE--SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~~~~--~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      .+.+.+++..+|++....  .+...++|+......++|.|                                        
T Consensus       147 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~C~g----------------------------------------  186 (241)
T d1brup_         147 QGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCNG----------------------------------------  186 (241)
T ss_dssp             EEEEEEECHHHHTSTTTTGGGCCTTEEEECCSSSSBCCTT----------------------------------------
T ss_pred             EEEEEEeCHHHhCccccccccccccceeecCCCCccccCC----------------------------------------
Confidence            999999999999876543  67788888888778899999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIH  410 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~  410 (417)
                                                    |+||||++.. +++|+|+||+|||. .+|+ ..+.|+|||||+.|++||+
T Consensus       187 ------------------------------dsGgPl~~~~~~~~~~L~Gi~S~g~~~~c~-~~~~p~vyt~v~~~~~WI~  235 (241)
T d1brup_         187 ------------------------------DSGGPLNCQGANGQWQVHGIVSFGSSLGCN-YYHKPSVFTRVSNYIDWIN  235 (241)
T ss_dssp             ------------------------------CTTCEEEEECTTSCEEEEEEEEECBTTBSS-CTTCCEEEEEGGGSHHHHH
T ss_pred             ------------------------------CcccceEEEcCCCCEEEEEEEEECCCCCCC-CCCCCEEEEEHHHHHHHHH
Confidence                                          9999999874 78999999999985 4577 6788999999999999999


Q ss_pred             hhhcc
Q psy15063        411 VNAIV  415 (417)
Q Consensus       411 ~~~~~  415 (417)
                      ++|+-
T Consensus       236 ~~i~~  240 (241)
T d1brup_         236 SVIAN  240 (241)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99863

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=5.6e-39  Score=294.92  Aligned_cols=217  Identities=25%  Similarity=0.409  Sum_probs=182.9

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |.+|.++.++   +|||+|.|.   .++|+||||+++|||||   |||+...    +.....+.++......    ..+.
T Consensus         1 i~gG~~~~~~---~~Pw~v~l~~~~~~~C~GtLIs~~~VLTa---AhC~~~~----~~~~~~~~~~~~~~~~----~~~~   66 (224)
T d1gdna_           1 IVGGTSASAG---DFPFIVSISRNGGPWCGGSLLNANTVLTA---AHCVSGY----AQSGFQIRAGSLSRTS----GGIT   66 (224)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---HHHHTTS----CGGGEEEEESCSBSSS----SSEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCCEEEEEEEEeCCEEEEC---cccceec----cccccceeeccccccC----Ccce
Confidence            5689999888   499999994   34899999999999999   9999654    3345566666655433    4567


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.+..++.||.|...  .+|||||+|++|+.+++.++|+|++...... .+..+.++|||.+.......+..|++..+++
T Consensus        67 ~~~~~i~~h~~~~~~--~~DiAll~L~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~v~~  144 (224)
T d1gdna_          67 SSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPI  144 (224)
T ss_dssp             EEEEEEEECTTCBTT--BSCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEE
T ss_pred             EEEEEEEeeeccccc--cceeEEEeeccccccccccceeeccccccccccceeeeeeccCccccCCCcCCCEeeeeEEEE
Confidence            778999999998654  6999999999999999999999999877654 7899999999998876645678899999999


Q ss_pred             eChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEc
Q psy15063        261 LSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIA  338 (417)
Q Consensus       261 ~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~  338 (417)
                      ++.++|+..+.. .+.+.++|+.... +.+.|.+                                              
T Consensus       145 i~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~c~~----------------------------------------------  178 (224)
T d1gdna_         145 VSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQG----------------------------------------------  178 (224)
T ss_dssp             ECHHHHHHHHCTTTSCTTEEEECCTTCCCBCCTT----------------------------------------------
T ss_pred             eCHHHHhcccccCccccceeeeecCCCCcccccc----------------------------------------------
Confidence            999999998876 5677888887766 7889999                                              


Q ss_pred             cCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhh
Q psy15063        339 LDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN  412 (417)
Q Consensus       339 ~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~  412 (417)
                                              |+||||++   ++|+|+||+||| ..|+ .++.|+|||||+.|++||+..
T Consensus       179 ------------------------dsG~pl~~---~~~~l~GI~S~g-~~c~-~~~~p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         179 ------------------------DSGGPIVD---SSNTLIGAVSWG-NGCA-RPNYSGVYASVGALRSFIDTY  223 (224)
T ss_dssp             ------------------------CTTCEEEC---TTCCEEEEEEEC-SSSS-CTTCCEEEEETTTTHHHHHHH
T ss_pred             ------------------------ccCCceEe---cCCEEEEEEEeC-CCCC-CCCCCEEEEEHHHHHHHHHHC
Confidence                                    99999985   346799999999 7898 788999999999999999864

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-40  Score=303.20  Aligned_cols=217  Identities=29%  Similarity=0.428  Sum_probs=186.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.+++   |||+|++.      .+.|+||||+++|||||   |||+.        ....|.+|......... .
T Consensus         1 iigG~~a~~~~---~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTa---AhC~~--------~~~~v~~g~~~~~~~~~-~   65 (227)
T d1fq3a_           1 IIGGHEAKPHS---RPYMAYLMIWDQKSLKRCGGFLIQDDFVLTA---AHCWG--------SSINVTLGAHNIKEQEP-T   65 (227)
T ss_dssp             CBTCBCCCTTS---CTTEEECCEEETTEEECCEEEEEETTEEEEC---GGGCC--------SEEEEEESCSBTTTTCT-T
T ss_pred             CCCCEECCCCC---CCCEEEEEEEcCCCcEEEEEEEEeCCEEEeC---Eeecc--------ccccceecccccccccc-c
Confidence            57899999995   99999983      34899999999999999   99995        34688999888776655 6


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.|.+++.||.|+..+.+||||||+|++|+.|+++++|+|||...... .+..+.++|||.+.... .....|+++.
T Consensus        66 ~~~~~v~~i~~~~~~~~~~~~~DiAll~L~~~i~~~~~v~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~l~~~~  144 (227)
T d1fq3a_          66 QQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG-KHSHTLQEVK  144 (227)
T ss_dssp             CEEEEEEEECCCTTCCTTTTTTCCEEEEESSCCCCCSSCCCCCCCCSSCCCCTTCEEECCCSCCSTTTS-CCCSBCCBCE
T ss_pred             cEEEEEEEEEecccCCCCCCCcchhhhhcccccccceeEEEEeecccccccCCCCEEEEEeeccccCcc-cccccceEEE
Confidence            788899999999999999999999999999999999999999999876665 78899999999887655 5678899999


Q ss_pred             EEEeChhhhhhhhhc-cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEE
Q psy15063        258 VKVLSNARCSTVIEE-SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQV  335 (417)
Q Consensus       258 v~i~~~~~C~~~~~~-~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~  335 (417)
                      +.+++++.|+..+.. .....+.|..... ..+.|.|                                           
T Consensus       145 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------------------------------  181 (227)
T d1fq3a_         145 MTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKG-------------------------------------------  181 (227)
T ss_dssp             EECCCHHHHTTTCTTTCCTTTEECCSCTTSSCBCCTT-------------------------------------------
T ss_pred             EEEEcHHHhhhhhcccccccceeeeeccccccccccC-------------------------------------------
Confidence            999999999988876 3444555555444 7889999                                           


Q ss_pred             EEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        336 AIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       336 ~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                                 |+||||++  +  ++|+||+||| ..|.   ..|.|||||+.|++||+++|+-
T Consensus       182 ---------------------------dsG~pl~~--~--~~l~GI~s~g-~~~~---~~p~vyt~v~~y~~WI~~~i~~  226 (227)
T d1fq3a_         182 ---------------------------DSGGPLVC--N--KVAQGIVSYG-RNNG---MPPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             ---------------------------CTTCBCBS--S--SSCCCEECCC-CTTS---CSCCCEECHHHHHHHHHHHTTC
T ss_pred             ---------------------------CCCceEEE--e--CEEEEEEEEc-CCCC---CCCcEEEEHHHHHHHHHHHHHh
Confidence                                       99999998  3  4699999999 6776   3589999999999999999863

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=1.1e-38  Score=294.74  Aligned_cols=219  Identities=29%  Similarity=0.459  Sum_probs=184.9

Q ss_pred             ecCCCCCCCCCCCCCcceeeE-ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEe
Q psy15063        105 KSPHHPARPSSGLTCDYDVAI-RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRG  183 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i-~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~  183 (417)
                      |++|++|.++   +|||+|.| ..++|+||||+++|||||   |||+.+        ...+.++......... ......
T Consensus         1 i~gG~~a~~~---~~Pw~v~i~~~~~C~GtLIs~~~VLTa---AhCv~~--------~~~~~~~~~~~~~~~~-~~~~~~   65 (235)
T d1tona_           1 IVGGYKCEKN---SQPWQVAVINEYLCGGVLIDPSWVITA---AHCYSN--------NYQVLLGRNNLFKDEP-FAQRRL   65 (235)
T ss_dssp             CBSCEECCTT---SCTTEEEEESSSEEEEEEEETTEEEEC---GGGCCS--------CCEEEESCSBTTSCCT-TCEEEC
T ss_pred             CCCCEECCCC---CCCeEEEEcCCeEEEEEEecCCEEEEC---ceecCC--------CCceEEeeeeeecCCC-ceeEee
Confidence            5789999999   59999998 556999999999999999   999964        2355566555544433 455666


Q ss_pred             eeEEEeCCCCCC-----------CCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCcc
Q psy15063        184 VRRVLFHSHFHP-----------FVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPT  252 (417)
Q Consensus       184 V~~i~iHP~Y~~-----------~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~  252 (417)
                      +.++..|+.|..           ....+|||||+|++|+.|++.+.|+||+..... ....+.++|||.+..........
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~i~~i~l~~~~~~-~~~~~~~~g~g~~~~~~~~~~~~  144 (235)
T d1tona_          66 VRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPK-VGSTCLASGWGSTNPSEMVVSHD  144 (235)
T ss_dssp             EEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCCC-TTCEEEEEESSCSSSSSCCCCSB
T ss_pred             eeeeeeeeeceeeeeeecccccccccccceeEEEecCccccCCccccccccccccc-ccceeEEEEcccccccccccccc
Confidence            777777777743           455789999999999999999999999987766 68889999999988766556778


Q ss_pred             ceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccC
Q psy15063        253 LQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEF  331 (417)
Q Consensus       253 L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~  331 (417)
                      |+.+.++++++++|+..+.....+.++|+.... ..+.|.|                                       
T Consensus       145 l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~c~g---------------------------------------  185 (235)
T d1tona_         145 LQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAG---------------------------------------  185 (235)
T ss_dssp             CEEEEEEEECGGGCGGGGSTTGGGGEEEEECTTCSCBCCTT---------------------------------------
T ss_pred             ceeeeeeeeCHHHHHHHhCCCCCCCceEeCcCCCCccccCC---------------------------------------
Confidence            999999999999999999888889999998766 7789999                                       


Q ss_pred             CcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhh
Q psy15063        332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       332 p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                                                     |+||||++  +  ++|+||+|||...|. ....|++||||+.|++||++
T Consensus       186 -------------------------------dsG~Pl~~--~--~~l~Gi~S~g~~~c~-~~~~p~vyt~v~~y~~WI~~  229 (235)
T d1tona_         186 -------------------------------DSGGPLIC--D--GVLQGITSGGATPCA-KPKTPAIYAKLIKFTSWIKK  229 (235)
T ss_dssp             -------------------------------CTTCEEEE--T--TEEEEEECCCCSSCS-CTTCCEEEEEGGGGHHHHHH
T ss_pred             -------------------------------CcCCeEEE--c--CEEEEEEEeCCCCCC-CCCCCeEEEEHHHHHHHHHH
Confidence                                           99999998  4  479999999977887 57889999999999999999


Q ss_pred             hhc
Q psy15063        412 NAI  414 (417)
Q Consensus       412 ~~~  414 (417)
                      +|.
T Consensus       230 ~i~  232 (235)
T d1tona_         230 VMK  232 (235)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            985

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=100.00  E-value=3.9e-39  Score=297.39  Aligned_cols=217  Identities=26%  Similarity=0.416  Sum_probs=184.0

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc-------ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ-------DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~-------~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|++|.++   +|||+|+|..       ++|+||||+++|||||   |||+..      ...+.+.+|..+...    
T Consensus         1 i~~G~~a~~g---e~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTa---AhC~~~------~~~~~v~~~~~~~~~----   64 (230)
T d2hlca_           1 IINGYEAYTG---LFPYQAGLDITLQDQRRVWCGGSLIDNKWILTA---AHCVHD------AVSVVVYLGSAVQYE----   64 (230)
T ss_dssp             CBTCEECCTT---TSTTEEEEEEEETTSCEEEEEEEEEETTEEEEC---HHHHTT------EEEEEEEESCSBTTC----
T ss_pred             CCCCEECCCC---CCCCEEEEEEEecCCCeeEEEEEEEeCCEEEEe---eecccc------cccceeecccceecc----
Confidence            5789999998   4999999842       3799999999999999   999964      366788888776543    


Q ss_pred             CcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc---CCCeEEEEEcCccCCCCCCCCccce
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF---IGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~---~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                      ..+.+.|+++++||+|+.....+|||||+|+++ .++++++||||+......   .+..+++.|||....    ....++
T Consensus        65 ~~~~~~v~~i~~hp~y~~~~~~~DiALl~L~~~-~~~~~v~pi~l~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~  139 (230)
T d2hlca_          65 GEAVVNSERIISHSMFNPDTYLNDVALIKIPHV-EYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNT----DTVILQ  139 (230)
T ss_dssp             CSEEEECSEEEECTTCBTTTTBTCCEEEECSCC-CCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSS----CCCBCE
T ss_pred             cccceeeEeEEeeecccccccccceeEEEeecc-cccccceeEEeeccccccccccceeEEEEeeccccc----cchhhh
Confidence            558889999999999999999999999999876 688899999998765433   677889999997553    456789


Q ss_pred             EEEEEEeChhhhhhhhhc-cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCc
Q psy15063        255 KLEVKVLSNARCSTVIEE-SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPW  333 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~~~~-~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~  333 (417)
                      .+.+..++.+.|...+.. ...+.++|+....+.+.|.|                                         
T Consensus       140 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------------------------------  178 (230)
T d2hlca_         140 YTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFG-----------------------------------------  178 (230)
T ss_dssp             EEEEEEECHHHHHTTSCTTSSCTTEEEECCTTSCBCCTT-----------------------------------------
T ss_pred             eeeeccccchhhhhccccccccccceEeccccCcccccc-----------------------------------------
Confidence            999999999999887765 56678889887778889999                                         


Q ss_pred             EEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHhhh
Q psy15063        334 QVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIHVN  412 (417)
Q Consensus       334 ~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~~~  412 (417)
                                                   |+||||++  +++|+|+||+||+. ..|.  .+.|.+||||+.|++||+++
T Consensus       179 -----------------------------dsGgp~~~--~~~~~l~Gi~S~~~~~~~~--~~~p~vyt~V~~y~~WI~~~  225 (230)
T d2hlca_         179 -----------------------------DSGGPFVL--SDKNLLIGVVSFVSGAGCE--SGKPVGFSRVTSYMDWIQQN  225 (230)
T ss_dssp             -----------------------------CTTCEEEE--GGGTEEEEEEEECCTTCTT--SCCCEEEEEGGGGHHHHHHH
T ss_pred             -----------------------------ccCCCeEE--CCCeEEEEEEEEeCCCCCC--CCCCeEEEEhHHhHHHHHHH
Confidence                                         99999999  67889999999985 3355  78999999999999999999


Q ss_pred             hccC
Q psy15063        413 AIVT  416 (417)
Q Consensus       413 ~~~~  416 (417)
                      |++.
T Consensus       226 ~~~~  229 (230)
T d2hlca_         226 TGIK  229 (230)
T ss_dssp             HCCC
T ss_pred             hCCC
Confidence            9874

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=293.15  Aligned_cols=214  Identities=25%  Similarity=0.395  Sum_probs=182.7

Q ss_pred             CCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCc
Q psy15063        107 PHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSH  179 (417)
Q Consensus       107 ~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~  179 (417)
                      +|++|.++   +|||+|.|.       .++|+|+||+++|||||   |||+.        ..+.|++|.+++..... ..
T Consensus         1 GG~~a~~~---e~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTa---AhCv~--------~~~~v~~g~~~~~~~~~-~~   65 (224)
T d1nn6a_           1 GGTECKPH---SRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTA---AHCAG--------RSITVTLGAHNITEEED-TW   65 (224)
T ss_dssp             CCEECCTT---SSTTEEEEEEECTTSCEEEEEEEEEETTEEEEC---GGGCC--------SEEEEEESCSBTTSCCT-TC
T ss_pred             CCcCCcCC---CCCCEEEEEEEeCCCCceEEEEEEEeCCEEEeh---hhccc--------ccceEEecccccccccc-cc
Confidence            57788888   599999993       23799999999999999   99995        35789999999887776 67


Q ss_pred             EEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEE
Q psy15063        180 VRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEV  258 (417)
Q Consensus       180 q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v  258 (417)
                      +...+.+++.||.|+..+..+|||||+|.+|+.++..++|+|++...... .+..+.+.||+.+.... ..+..|+.+.+
T Consensus        66 ~~~~~~~~~~~p~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~  144 (224)
T d1nn6a_          66 QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLK-PGSDTLQEVKL  144 (224)
T ss_dssp             EEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCSCCCCCCTTCEEEEEECCCCSSSC-CCCSBCEEEEE
T ss_pred             cceeEEEEEEeecccccccccchhhhcccCCcccccccccccccccccccCCCceeeeccccccccCC-CccccceEEEE
Confidence            88899999999999999999999999999999999999999999877655 78899999999887655 56788999999


Q ss_pred             EEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEE
Q psy15063        259 KVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAI  337 (417)
Q Consensus       259 ~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~  337 (417)
                      .++++++|+..+.. .....+|+.... ..+.|.|                                             
T Consensus       145 ~~~~~~~C~~~~~~-~~~~~~~~~~~~~~~~~c~g---------------------------------------------  178 (224)
T d1nn6a_         145 RLMDPQACSHFRDF-DHNLQLCVGNPRKTKSAFKG---------------------------------------------  178 (224)
T ss_dssp             EBCCGGGGTTSTTC-CTTTEEEECCTTTC--CCCC---------------------------------------------
T ss_pred             EecCHHHHhhhccc-ccceeeeccCccccccccCC---------------------------------------------
Confidence            99999999887764 445566665544 7789999                                             


Q ss_pred             ccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        338 ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       338 ~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                               |+||||++  +  ++|+||+|+| ..|.   +.|.+||||+.|++||+++|+.
T Consensus       179 -------------------------DsG~PL~~--~--~~l~GI~s~g-~~~~---~~p~vyt~v~~y~~WI~~~i~~  223 (224)
T d1nn6a_         179 -------------------------DSGGPLLC--A--GVAQGIVSYG-RSDA---KPPAVFTRISHYRPWINQILQA  223 (224)
T ss_dssp             -------------------------CTTCEEEE--T--TEEEEEEEEC-CTTC---CSCEEEEEHHHHHHHHHHHHHT
T ss_pred             -------------------------CccceEEE--C--CEEEEEEEEC-CCCC---CCCeEEEEHHHHHHHHHHHHhc
Confidence                                     99999998  4  4699999999 5555   5799999999999999999864

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-39  Score=298.46  Aligned_cols=216  Identities=24%  Similarity=0.402  Sum_probs=181.2

Q ss_pred             CCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCC-CCcEEEeeeEEEe
Q psy15063        118 TCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNE-TSHVRRGVRRVLF  189 (417)
Q Consensus       118 ~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~-~~~q~~~V~~i~i  189 (417)
                      .|||+|+|.       .++|+||||+++|||||   |||+.+.      ....+.+|......... ...+.+.|.++++
T Consensus         1 ~~PW~v~l~~~~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~------~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~   71 (232)
T d1fona_           1 SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTA---GHCISTS------RTYQVVLGEYDRSVLEGSEQVIPINAGDLFV   71 (232)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCEEEETTEEEEC---GGGCCTT------SCEEEEEEEEETTEEEEEEEEEEECTTSEEE
T ss_pred             CCccEEEEEEeCCCceEEEEEEEEecCCEEEEC---hhhccCC------CceEEEEEeccccccccccccccceeEEEEE
Confidence            399999983       33899999999999999   9999753      45677788766553322 1335667999999


Q ss_pred             CCCCCCCCC--CCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhh
Q psy15063        190 HSHFHPFVL--SNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC  266 (417)
Q Consensus       190 HP~Y~~~~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C  266 (417)
                      ||+|+....  ++|||||+|++|+.|++.++|||+|...... .+..+++.||+.+.... ..+..|+...+++++.+.|
T Consensus        72 hp~~~~~~~~~~~diAll~l~~~~~~~~~~~pic~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~  150 (232)
T d1fona_          72 HPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGG-PLPDKLQQALLPTVDYEHC  150 (232)
T ss_dssp             CTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSS-SCCSBCEEEECCEECHHHH
T ss_pred             ccCccccccccccceeeeecccceEEeecceeeecCcccccCCCCceeEeeccccccCCC-CCCCcceEEEEEEEcHHHh
Confidence            999987654  5999999999999999999999999877655 67899999999987655 6778999999999999999


Q ss_pred             hhhhhc--cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeee
Q psy15063        267 STVIEE--SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFF  344 (417)
Q Consensus       267 ~~~~~~--~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~  344 (417)
                      .+.+..  .+++.++|+... ....|.|                                                    
T Consensus       151 ~~~~~~~~~~~~~~~c~~~~-~~~~~~g----------------------------------------------------  177 (232)
T d1fona_         151 SQWDWWGITVKKTMVCAGGD-TRSGCNG----------------------------------------------------  177 (232)
T ss_dssp             TSTTTTGGGCCTTEEEECCS-SSCSTTS----------------------------------------------------
T ss_pred             hhhhccCceeeeceeeeccc-ccccccc----------------------------------------------------
Confidence            986654  678899999765 6778999                                                    


Q ss_pred             eeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        345 CGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       345 Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                        |+||||++.. +++|+|+||+||+. .+|+ ..+.|++||||+.|++||+++|..
T Consensus       178 ------------------dsGgpl~~~~~~~~~~L~Gi~s~~~~~~c~-~~~~p~vyt~V~~y~~WI~~~i~~  231 (232)
T d1fona_         178 ------------------DSGGPLNCPAADGSWQVHGVTSFVSAFGCN-TIKKPTVFTRVSAFIDWIDETIAS  231 (232)
T ss_dssp             ------------------CTTCEEEEECSSSCEEEEEEEEECCTTCSS-BTTBCEEEEEGGGSHHHHHHHHHH
T ss_pred             ------------------CCCCceEEEccCCCEEEEEEEEEcCCCCCC-CCCCCEEEEEHHHHHHHHHHHHHc
Confidence                              9999999876 78999999999985 5688 778899999999999999999863

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.2e-38  Score=290.93  Aligned_cols=226  Identities=25%  Similarity=0.386  Sum_probs=189.7

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.++   +|||+|+|.       .++|+|+||+++|||||   |||+.+.      ....|.+|..+...... 
T Consensus         1 i~~G~~a~~~---~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~------~~~~v~~g~~~~~~~~~-   67 (240)
T d1gvkb_           1 VVGGTEAQRN---SWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTA---AHCVDRE------LTFRVVVGEHNLNQNNG-   67 (240)
T ss_dssp             CBTCEECCTT---SCTTEEEEEEEETTEEEEEEEEEEEETTEEEEC---GGGGCSC------CCEEEEESCSBTTSCCS-
T ss_pred             CCCCEECCCC---CCCEEEEEEEecCCccceEEEEEEEeCCEEEEC---ccccccc------CCceEEeeeeecccccc-
Confidence            5789999999   499999983       23799999999999999   9999753      45578889888776554 


Q ss_pred             CcEEEeeeE--EEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccce
Q psy15063        178 SHVRRGVRR--VLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       178 ~~q~~~V~~--i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                      .........  ++.|+.++....++|||||+|.+|+.+++.++|+||+...... ......++||+.+.... .....|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~  146 (240)
T d1gvkb_          68 TEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNG-QLAQTLQ  146 (240)
T ss_dssp             CCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTC-CBCSBCE
T ss_pred             ccccccccceeEEEeecccccccCcceeeecccCcccccccccceeeccCccccccccceeEeccccccccc-cccceee
Confidence            334434444  4445566777889999999999999999999999999877655 67888899999988765 5677899


Q ss_pred             EEEEEEeChhhhhhhhhc--cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        255 KLEVKVLSNARCSTVIEE--SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~~~~--~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      ..++++++...|......  ...+.++|+......+.|.|                                        
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~c~g----------------------------------------  186 (240)
T d1gvkb_         147 QAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQG----------------------------------------  186 (240)
T ss_dssp             EEECCEECHHHHTSTTTTGGGCCTTEEEECCSSSCBCCTT----------------------------------------
T ss_pred             EEEEEEEcHHHhcceeccCCccCCceEEecCCCCCccccC----------------------------------------
Confidence            999999999999877655  67889999998878899999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHhh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                                                    |+|+||++..+++|+|+||+||+. .+|. ..+.|+|||||+.|++||++
T Consensus       187 ------------------------------DsG~pl~~~~~~~~~lvGI~S~~~~~~c~-~~~~p~vyt~v~~~~~WI~~  235 (240)
T d1gvkb_         187 ------------------------------DSGGPLHCLVNGQYAVHGVTSFVSRLGCN-VTRKPTVFTRVSAYISWINN  235 (240)
T ss_dssp             ------------------------------CTTCEEEEEETTEEEEEEEEEECBTTBSS-CTTCCEEEEEGGGSHHHHHH
T ss_pred             ------------------------------ccccceEEEECCEEEEEEEEEEcCCCCCC-CCCCCEEEEEHHHhHHHHHH
Confidence                                          999999999999999999999985 4577 66789999999999999999


Q ss_pred             hhcc
Q psy15063        412 NAIV  415 (417)
Q Consensus       412 ~~~~  415 (417)
                      +|+.
T Consensus       236 ~i~~  239 (240)
T d1gvkb_         236 VIAS  239 (240)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9864

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=294.70  Aligned_cols=228  Identities=29%  Similarity=0.450  Sum_probs=187.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|++|.++   +|||+|.|.   .++|+||||+++|||||   |||+.+..   ....+.+.++.+++..... ....
T Consensus         1 iigG~~a~~~---~~Pw~v~i~~~~~~~C~GtLIs~~~VLTA---AhCv~~~~---~~~~~~v~~~~~~~~~~~~-~~~~   70 (254)
T d2bz6h1           1 IVGGKVCPKG---ECPWQVLLLVNGAQLCGGTLINTIWVVSA---AHCFDKIK---NWRNLIAVLGEHDLSEHDG-DEQS   70 (254)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEECSSSEEEEC---GGGGTTCS---CGGGEEEEESCCBTTCCCS-CCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCCEEEEEEEeCCCEEEEC---cccccCCC---Ccccceeeccceeeccccc-ccee
Confidence            5789999998   499999994   34899999999999999   99997642   3366788889888876665 6677


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCc---c-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGES---F-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~---~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      ..+..++.|+.|+.....||||||||++|+.++++++|+|||.....   . ....+.+.|||.+.... ......+...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~i~picl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  149 (254)
T d2bz6h1          71 RRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRG-ATALELMVLN  149 (254)
T ss_dssp             EEEEEEEEETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTS-CBCSBCEEEE
T ss_pred             eeeeeeeecccccccccccceeEEEecCcccccceEeeeecCccccccccccCCceEEEeccCccCCCC-cccccceeee
Confidence            88999999999999999999999999999999999999999975431   1 67889999999988665 4445555556


Q ss_pred             EEEeChhhhhhhhhc-----cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccC
Q psy15063        258 VKVLSNARCSTVIEE-----SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEF  331 (417)
Q Consensus       258 v~i~~~~~C~~~~~~-----~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~  331 (417)
                      ..+.....|......     .....++|+.... ....|.|                                       
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------------------------------------  190 (254)
T d2bz6h1         150 VPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKG---------------------------------------  190 (254)
T ss_dssp             EEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGG---------------------------------------
T ss_pred             ecccchhhhhhhhhcccccccccccceeeeccCCCcccccC---------------------------------------
Confidence            666665555443222     4566777776655 7789999                                       


Q ss_pred             CcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhh
Q psy15063        332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       332 p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                                                     |+||||++..+++|+|+||+||| ..|+ ..+.|++||||+.|++||++
T Consensus       191 -------------------------------dsGgPl~~~~~~~~~lvGi~S~g-~~c~-~~~~p~vytrv~~~~~WI~~  237 (254)
T d2bz6h1         191 -------------------------------DSGGPHATHYRGTWYLTGIVSWG-QGCA-TVGHFGVYTRVSQYIEWLQK  237 (254)
T ss_dssp             -------------------------------GTTCEEEEEETTEEEEEEEEEEC-SSSS-CTTCCEEEEEGGGGHHHHHH
T ss_pred             -------------------------------ccccceEEccCCeEEEEEEEEeC-CCCC-CCCCCEEEEEHHHHHHHHHH
Confidence                                           99999999999999999999999 8888 78999999999999999999


Q ss_pred             hhcc
Q psy15063        412 NAIV  415 (417)
Q Consensus       412 ~~~~  415 (417)
                      +|+.
T Consensus       238 ~i~~  241 (254)
T d2bz6h1         238 LMRS  241 (254)
T ss_dssp             HHTS
T ss_pred             HHhh
Confidence            9864

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=100.00  E-value=6.6e-38  Score=289.78  Aligned_cols=224  Identities=26%  Similarity=0.443  Sum_probs=186.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.++.++   +|||+|.+.      .++|+||||+++|||||   |||+...    ....+.|.+|..+.....  .
T Consensus         1 i~gG~~~~~~---e~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~----~~~~~~v~~~~~~~~~~~--~   68 (241)
T d1m9ua_           1 VIGGTNASPG---EFPWQLSQQRQSGSWSHSCGASLLSSTSALSA---SHCVDGV----LPNNIRVIAGLWQQSDTS--G   68 (241)
T ss_dssp             CBTCEECCTT---SSTTEEEEEEESSSEEEEEEEEECSSSEEEEC---HHHHTTC----CGGGEEEEESCSBTTCCT--T
T ss_pred             CCCCEECCCC---CCCCEEEEEEeCCCccEEEEEEEEeCCEEEEC---hhhcccc----cCceeeEEEEeeeccccc--c
Confidence            5788888888   599999983      24899999999999999   9999543    457788999987765443  4


Q ss_pred             cEEEeeeEEEeCCCCCCC--CCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceE
Q psy15063        179 HVRRGVRRVLFHSHFHPF--VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQK  255 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~--~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~  255 (417)
                      .+.+.|+++++||.|+..  ..+||||||+|++|+.+++.++|||+|...... .+..+++.||+.+.... ..+..++.
T Consensus        69 ~~~~~v~~~~~h~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~  147 (241)
T d1m9ua_          69 TQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTN-NLPDILQK  147 (241)
T ss_dssp             CEEEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSS-CCCSBCEE
T ss_pred             cccccceeeeeeeeeccccccccccceeeeccceeeeeeceeeeeeeccccccccceEEEEeecccccCCC-CCCCcceE
Confidence            678889999999999875  457899999999999999999999999776554 88999999999988655 56889999


Q ss_pred             EEEEEeChhhhhhhhhc----cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeeccccccccc
Q psy15063        256 LEVKVLSNARCSTVIEE----SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGE  330 (417)
Q Consensus       256 ~~v~i~~~~~C~~~~~~----~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~  330 (417)
                      +.+.+++.++|+..+..    ......+|+.... ..+.|.|                                      
T Consensus       148 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------------------  189 (241)
T d1m9ua_         148 SSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNG--------------------------------------  189 (241)
T ss_dssp             EEEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTT--------------------------------------
T ss_pred             EEEEeechhHhhhhhhcccccccccceeEeecccCCcCcccC--------------------------------------
Confidence            99999999999988754    3455666766555 7889999                                      


Q ss_pred             CCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC---CCccccCCCCeEEEecccchh
Q psy15063        331 FPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV---TGCAIMPSYPDLYTRVSEYIR  407 (417)
Q Consensus       331 ~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~---~~C~~~~~~p~vyt~Vs~~~~  407 (417)
                                                      |+||||++. ++.++|+||+|+..   .+|. ..+.|+|||||+.|++
T Consensus       190 --------------------------------~sGgpl~~~-~~~~~l~Gi~s~~~~~g~~~~-~~~~p~vft~V~~y~~  235 (241)
T d1m9ua_         190 --------------------------------DSGGPLNCP-DGGTRVVGVTSWVVSSGLGAC-LPDYPSVYTRVSAYLG  235 (241)
T ss_dssp             --------------------------------CTTCEEEEE-SSSEEEEEEEEECCBCTTSCB-CTTSCEEEEEGGGTHH
T ss_pred             --------------------------------CCCcceEEe-cCCEEEEEEEEEEEcCCCCCC-CCCCCEEEEEHHHhHH
Confidence                                            999999986 55678999999763   3454 4789999999999999


Q ss_pred             HHhhhh
Q psy15063        408 WIHVNA  413 (417)
Q Consensus       408 WI~~~~  413 (417)
                      ||++|+
T Consensus       236 WI~~n~  241 (241)
T d1m9ua_         236 WIGDNS  241 (241)
T ss_dssp             HHHHHC
T ss_pred             HHHHcc
Confidence            999874

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=6.4e-38  Score=289.26  Aligned_cols=223  Identities=24%  Similarity=0.401  Sum_probs=187.9

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNET  177 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~  177 (417)
                      |++|.+|.+++   |||+|+|.       .+.|+||||+++|||||   |||+.+.      ....+.+|......... 
T Consensus         1 iigG~~~~~~~---~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~------~~~~v~~~~~~~~~~~~-   67 (236)
T d1elta_           1 VVGGRVAQPNS---WPWQISLQYKSGSSYYHTCGGSLIRQGWVMTA---AHCVDSA------RTWRVVLGEHNLNTNEG-   67 (236)
T ss_dssp             CBSSEECCTTS---STTEEEEEEEETTEEEEEEEEEEEETTEEEEC---HHHHSSC------CCEEEEESCSBTTSCCS-
T ss_pred             CCCCEECCCCC---CCcEEEEEEccCCcceeEEEEEEEeCCEEEEC---eeecccc------ccceeeccceeeecccC-
Confidence            57899999994   99999983       23799999999999999   9999754      55678888877665555 


Q ss_pred             CcEEEeeeEEEeCCCCCCCCC--CCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccce
Q psy15063        178 SHVRRGVRRVLFHSHFHPFVL--SNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQ  254 (417)
Q Consensus       178 ~~q~~~V~~i~iHP~Y~~~~~--~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~  254 (417)
                      ......+..+.+||.|+....  .+|||||+|++|+.++..++|||||...... ....+++.|||...... .....++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~  146 (236)
T d1elta_          68 KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGG-PLSDSLK  146 (236)
T ss_dssp             CCEEECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTC-CCCSBCE
T ss_pred             CceeeeeeEEEEeeeecccccccCceEEEeeccCcceeecccceeecCchhcccCCCceEEEecccccccCc-ccCccce
Confidence            667778888899999877643  6799999999999999999999999877655 67889999999987665 5678899


Q ss_pred             EEEEEEeChhhhhhhhhc--cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCC
Q psy15063        255 KLEVKVLSNARCSTVIEE--SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP  332 (417)
Q Consensus       255 ~~~v~i~~~~~C~~~~~~--~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p  332 (417)
                      ++.+.+++..+|......  .....++|+... ..+.|.|                                        
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~c~g----------------------------------------  185 (236)
T d1elta_         147 QAWLPSVDHATCSSSGWWGSTVKTTMVCAGGG-ANSGCNG----------------------------------------  185 (236)
T ss_dssp             EEECCEECHHHHTSTTTTGGGSCTTEEEECCS-SCBCCTT----------------------------------------
T ss_pred             eeeeEEEcHHHhhhhcccccccceeeeecCCc-ccccccc----------------------------------------
Confidence            999999999999877554  455666666544 6788999                                        


Q ss_pred             cEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCccccCCCCeEEEecccchhHHhh
Q psy15063        333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       333 ~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                                                    |+||||++..+++|+|+||+||+. .+|+ ..+.|+|||||+.|++||++
T Consensus       186 ------------------------------dsGgpl~~~~~~~~~l~GI~s~~~~~~c~-~~~~p~vyt~v~~y~~WI~~  234 (236)
T d1elta_         186 ------------------------------DSGGPLNCQVNGSYYVHGVTSFVSSSGCN-ASKKPTVFTRVSAYISWMNG  234 (236)
T ss_dssp             ------------------------------CTTCEEEEEETTEEEEEEEEEECCSSCTT-CTTCCEEEEEGGGGHHHHHH
T ss_pred             ------------------------------ccccceEEEECCeEEEEEEEEEeCCCCCC-CCCCCEEEEEHHHHHHHHHH
Confidence                                          999999999999999999999974 6787 67889999999999999998


Q ss_pred             hh
Q psy15063        412 NA  413 (417)
Q Consensus       412 ~~  413 (417)
                      +|
T Consensus       235 vi  236 (236)
T d1elta_         235 IM  236 (236)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-38  Score=286.71  Aligned_cols=214  Identities=28%  Similarity=0.487  Sum_probs=180.1

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCC
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETS  178 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~  178 (417)
                      |++|.+|.++   +|||+|+|.      .++|+||||+++|||||   |||+...    ....+.|++|.........  
T Consensus         1 i~gG~~a~~~---~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~----~~~~~~v~~g~~~~~~~~~--   68 (221)
T d1fuja_           1 IVGGHEAQPH---SRPYMASLQMRGNPGSHFCGGTLIHPSFVLTA---AHCLRDI----PQRLVNVVLGAHNVRTQEP--   68 (221)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTBTTCCCEEEEEEETTEEEEC---GGGGSSS----CGGGEEEEESCSBTTSCCT--
T ss_pred             CCCCEECCCC---CCCcEEEEEEecCCCCEEEEEEEEeCCEEEEe---eEEEeec----CCccceeeeeccccccccc--
Confidence            5789999998   499999994      24899999999999999   9999654    4466889999877665443  


Q ss_pred             cEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEE
Q psy15063        179 HVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLE  257 (417)
Q Consensus       179 ~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~  257 (417)
                      .+.+.+..++.||.|+..+..||||||+|++|+.|+++++|||||...... .+..+++.||+...... .....|+...
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~diAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~l~~~~  147 (221)
T d1fuja_          69 TQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHD-PPAQVLQELN  147 (221)
T ss_dssp             TCEEEEEEEEEECCCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSS-CBCSBCEEEE
T ss_pred             cceeeeeeeEEEeeecCCCCccEEEEEEccccccccceEEEEEecccccccCCCceEEEeccccccccc-ccCccceeee
Confidence            467779999999999999999999999999999999999999999987655 78899999999887655 5667889999


Q ss_pred             EEEeChhhhhhhhhccCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEE
Q psy15063        258 VKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAI  337 (417)
Q Consensus       258 v~i~~~~~C~~~~~~~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~  337 (417)
                      +.+.+...|..        ...|.....+.+.|.|                                             
T Consensus       148 ~~~~~~~~~~~--------~~~~~~~~~~~~~c~g---------------------------------------------  174 (221)
T d1fuja_         148 VTVVTFFCRPH--------NICTFVPRRKAGICFG---------------------------------------------  174 (221)
T ss_dssp             EEEECTTCCTT--------EEEEECSSSSCBCCTT---------------------------------------------
T ss_pred             eeeeeeccccc--------cceeccccCCCceeCC---------------------------------------------
Confidence            88887654432        3455555558899999                                             


Q ss_pred             ccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        338 ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       338 ~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                               |+||||++  ++  +|+||+||+..+|+ ..+.|+|||||+.|++||+++|+
T Consensus       175 -------------------------d~G~pl~~--~~--~l~Gi~s~~~~gc~-~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         175 -------------------------DSGGPLIC--DG--IIQGIDSFVIWGCA-TRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             -------------------------CTTCEEEE--TT--EEEEEEEECSSSTT-CSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             -------------------------ccCCCEEE--eC--EEEEEEEEEECCCC-CCCCCeEEEEHHHhHHHHHHHhC
Confidence                                     99999998  54  59999999977898 68899999999999999999985

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=100.00  E-value=1.2e-37  Score=288.18  Aligned_cols=221  Identities=26%  Similarity=0.423  Sum_probs=180.3

Q ss_pred             ecCCCCCCCCCCCCCcceeeEcc---ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQ---DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~---~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|+|..   ++|+|+||+++|||||   |||+.+.        ..+.++..............
T Consensus         1 i~gG~~a~~~---e~Pw~v~i~~~~~~~C~G~LIs~~~VLTa---AhCv~~~--------~~~~~~~~~~~~~~~~~~~~   66 (234)
T d1op0a_           1 VIGGNECDIN---EHRFLVAFFNTTGFFCGGTLINPEWVVTA---AHCDSTD--------FQMQLGVHSKKVLNEDEQTR   66 (234)
T ss_dssp             CBSCEECCTT---SCTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCCSS--------CEEEESCSCSSSCCTTCEEE
T ss_pred             CCCCEECCCC---CcCcEEEEEECCcEEEEEEEEcCCEEEEC---ceeCCCC--------CccccceeeccccCCcceee
Confidence            5789999988   4999999943   4899999999999999   9999643        23334444333333313334


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEe
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL  261 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~  261 (417)
                      ..+...+.|+.|+.....||||||||++|+.|+++++|+|||..... .+..++++||+............|+...+.++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~DiaLl~L~~~v~~~~~i~picl~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  145 (234)
T d1op0a_          67 NPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPS-VGSVCRIMGWGSITPVKETFPDVPYCANINLL  145 (234)
T ss_dssp             CEEEEEECTTCCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEESSCSSSSSCCCCSSCEEEEEEEE
T ss_pred             eeeeeccccccccccccchhhhhhhcCCceeccceeecccccccCcc-cceEEEEeeeccccccccccccccccccceEe
Confidence            44567788999999999999999999999999999999999987655 78999999999887665457788999999999


Q ss_pred             Chhhhhhhhhcc-CCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        262 SNARCSTVIEES-IGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       262 ~~~~C~~~~~~~-~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      +...|...+... ....++|..... ..+.|.|                                               
T Consensus       146 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------------------------------------  178 (234)
T d1op0a_         146 DHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGG-----------------------------------------------  178 (234)
T ss_dssp             CHHHHHHHCTTCCTTSCEEEEECTTCCCBCCTT-----------------------------------------------
T ss_pred             chHHhcccccCcceeeeeeeecccccccccccC-----------------------------------------------
Confidence            999999988764 444555555554 7889999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                             |+|+||++  ++  +|+||+||+...|+ ....|+|||||+.|++||+++|+-
T Consensus       179 -----------------------~~G~Pl~~--~~--~l~Gi~S~g~~~c~-~~~~p~vft~v~~y~~WI~~~i~~  226 (234)
T d1op0a_         179 -----------------------DSGGPLIC--NG--QFQGIVSYGAHPCG-QGPKPGIYTNVFDYTDWIQRNIAG  226 (234)
T ss_dssp             -----------------------CTTCEEEE--TT--EEEEEEEECCSSTT-CTTSCEEEEESGGGHHHHHHHHHT
T ss_pred             -----------------------CCCceEEE--cC--EEEEEEEEcCCCCC-CCCCCeEEEEHHHHHHHHHHHHhh
Confidence                                   99999998  44  59999999988898 778899999999999999999864

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-38  Score=290.72  Aligned_cols=234  Identities=26%  Similarity=0.401  Sum_probs=184.2

Q ss_pred             CCCCccccccc--eeEecCCCCCCCCCCCCCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEE
Q psy15063         91 YSCGDVSKERV--TYFKSPHHPARPSSGLTCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVL  164 (417)
Q Consensus        91 ~~CG~~~~~~~--~~~~~~g~~a~~~~~~~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V  164 (417)
                      +.||..+....  .-+|++|.+|.+++   |||+|.|.    .++|+||||+++|||||   |||+.....   ......
T Consensus         2 ~~cg~~~~~~~~~~~ri~gG~~a~~~~---~Pw~v~i~~~~~~~~C~GtLIs~~~VLTa---AhCv~~~~~---~~~~~~   72 (247)
T d1rjxb_           2 FDCGKPQVEPKKCPGAVVGGCVAYPHS---WPWQVSLRTRFGMHFCGGTLISPEWVLTA---AHCLEKSPR---PSSYKV   72 (247)
T ss_dssp             CSTTCCSSCCCCCCTTSTTCEECCTTS---STTEEEEEETTCCEEEEEEEEETTEEEEE---GGGGTTCSC---GGGEEE
T ss_pred             CCCCCCCcCCCCCCCeEECCEECCCCC---CCcEEEEEECCCCEEEEEEEEeCCEEEee---eEEEEeccC---Ccccee
Confidence            57895444432  34689999999995   99999993    34899999999999999   999976432   233344


Q ss_pred             EeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccC
Q psy15063        165 HLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTS  243 (417)
Q Consensus       165 ~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~  243 (417)
                      ..+.........       ....+.|+.|......+||||++|++++.+++.++|+||+...... ....++..|||.+.
T Consensus        73 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~  145 (247)
T d1rjxb_          73 ILGAHQEVNLEP-------HVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ  145 (247)
T ss_dssp             EESCCBSSSCCT-------TCEEEEEEEEEECSSSCCEEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCC--
T ss_pred             eccccccccccc-------eeeEEeeccccCCCccchhhhhhhhcccccccccccccccccccccCCCceeeeccccccc
Confidence            444333322222       2344455556555668999999999999999999999998776554 67788889998766


Q ss_pred             CCCCCCCccceEEEEEEeChhhhhhhhhc--cCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCccee
Q psy15063        244 FPMGEPSPTLQKLEVKVLSNARCSTVIEE--SIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRI  320 (417)
Q Consensus       244 ~~~~~~~~~L~~~~v~i~~~~~C~~~~~~--~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~  320 (417)
                      ...  ....++.+.+.+++...|......  ...+.++|++... ..+.|.|                            
T Consensus       146 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~g----------------------------  195 (247)
T d1rjxb_         146 GTF--GAGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG----------------------------  195 (247)
T ss_dssp             --C--CCSBCEEEEEEEECHHHHTSTTTTTTCSCTTEEEESCSSSCCCBCCS----------------------------
T ss_pred             CCC--CCCcceEEEEEEEchHHhhhhhccCcccccceeEEeccCCCcccccC----------------------------
Confidence            543  678899999999999999877554  6778999998766 7889999                            


Q ss_pred             ecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEE
Q psy15063        321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYT  400 (417)
Q Consensus       321 ~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt  400 (417)
                                                                |+||||++..+++|+|+||+||+ ..|. ..+.|.+||
T Consensus       196 ------------------------------------------dsG~pl~~~~~~~~~l~Gi~S~~-~~c~-~~~~p~v~t  231 (247)
T d1rjxb_         196 ------------------------------------------DSGGPLVCFEKDKYILQGVTSWG-LGCA-RPNKPGVYV  231 (247)
T ss_dssp             ------------------------------------------CTTCEEEEECSSSEEEEEEECTT-SCCB-BTTBCEEEE
T ss_pred             ------------------------------------------CccceEEEeeCCEEEEEEEEEeC-CCCC-CCCCCEEEE
Confidence                                                      99999999999999999999999 8888 688899999


Q ss_pred             ecccchhHHhhhhc
Q psy15063        401 RVSEYIRWIHVNAI  414 (417)
Q Consensus       401 ~Vs~~~~WI~~~~~  414 (417)
                      ||+.|++||+++|+
T Consensus       232 ~v~~~~~WI~~~i~  245 (247)
T d1rjxb_         232 RVSRFVTWIEGVMR  245 (247)
T ss_dssp             EGGGGHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHh
Confidence            99999999999985

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=100.00  E-value=1.1e-37  Score=287.09  Aligned_cols=218  Identities=23%  Similarity=0.296  Sum_probs=173.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeEccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEee
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGV  184 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V  184 (417)
                      |++|.+|.++   +|||+|+|. +.|+||||+++|||||   |||+.+..   ....+.|.+|..+.....   .+.  +
T Consensus         1 ~~gG~~~~~~---~~Pw~v~l~-~~C~GtLIs~~~VLTa---AhCv~~~~---~~~~~~v~~g~~~~~~~~---~~~--i   65 (223)
T d1os8a_           1 VVGGTRAAQG---EFPFMVRLS-MGCGGALYAQDIVLTA---AHCVSGSG---NNTSITATGGVVDLQSSS---AVK--V   65 (223)
T ss_dssp             CBSCEECCTT---SSTTEEEET-TTEEEEEEETTEEEEC---GGGSSCSE---ECCCCEEEESCSBTTCTT---CEE--E
T ss_pred             CCCCEECCCC---CCCcEEEEe-ccEeEEEEeCCEEEEC---hhhccCCC---Ccceeeeccccccccccc---ccc--c
Confidence            5789999888   499999996 7899999999999999   99996532   235688999988765432   244  4


Q ss_pred             eEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChh
Q psy15063        185 RRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNA  264 (417)
Q Consensus       185 ~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~  264 (417)
                      +.+.+||.|+.....||||||||++++.++..+.+.+.     ...+..+.+.||+.+.... ..+..|+...+.+++++
T Consensus        66 ~~~~i~~~~~~~~~~~DIAllkL~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  139 (223)
T d1os8a_          66 RSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTT-----AYNQGTFTVAGWGANREGG-SQQRYLLKANVPFVSDA  139 (223)
T ss_dssp             EEEEEEECTTCSSSSCCCEEEEESSCCCSCCCEECCSS-----TTSSSEEEEEESSCSSTTC-CCCSBCEEEEEEEECHH
T ss_pred             eeeeeeecccccccceeeeeeeeeeeeecccccccccc-----cccccceEEeecccccccc-ccccccccceeeEeCHH
Confidence            55566666766778899999999999886543333332     2267889999999887655 57788999999999999


Q ss_pred             hhhhhhhc-cCCCCeEEecCCC--CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        265 RCSTVIEE-SIGIGMLCAAPDE--TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       265 ~C~~~~~~-~~~~~~iCa~~~~--~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      +|+..+.. .....++|.....  ..+.|.+                                                 
T Consensus       140 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-------------------------------------------------  170 (223)
T d1os8a_         140 ACRSAYGNELVANEEICAGYPDTGGVDTCQG-------------------------------------------------  170 (223)
T ss_dssp             HHHHHHGGGSCTTTEEEESCTTTCCCBCCTT-------------------------------------------------
T ss_pred             HhhhhhcCCCccCcceeeeccccCCcCcccc-------------------------------------------------
Confidence            99988766 3445555554433  6788999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEee-CCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQ-DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~-~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                           |+|+||++.. .++|+|+||+||| ..|+ ..+.|+|||||+.|++||+++|+.
T Consensus       171 ---------------------~~G~pl~~~~~~~~~~L~Gi~s~~-~~c~-~~~~p~vft~V~~y~~WI~~~~k~  222 (223)
T d1os8a_         171 ---------------------DSGGPMFRKDNADEWIQVGIVSWG-YGCA-RPGYPGVYTEVSTFASAIASAART  222 (223)
T ss_dssp             ---------------------CTTCEEEEECTTSCEEEEEEEEEC-SSSS-CTTCCEEEEEHHHHHHHHHHHHHT
T ss_pred             ---------------------ccccceEEecCCCeEEEEEEEEeC-CCCC-CCCCCEEEEEHHHHHHHHHHHHhh
Confidence                                 9999999876 5689999999999 8898 678999999999999999999863

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=283.90  Aligned_cols=213  Identities=25%  Similarity=0.501  Sum_probs=179.6

Q ss_pred             ecCCCCCCCCCCCCCcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.++   +|||+|.|.   .++|+|+||+++|||||   |||+.+.    ....+.+.++..+......  ...
T Consensus         1 i~gG~~a~~~---~~Pw~v~i~~~~~~~C~G~LIs~~~VLTa---AhC~~~~----~~~~~~v~~~~~~~~~~~~--~~~   68 (218)
T d2z7fe1           1 IVGGRRARPH---AWPFMVSLQLRGGHFCGATLIAPNFVMSA---AHCVANV----NVRAVRVVLGAHNLSRREP--TRQ   68 (218)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---HHHHTTS----CGGGCEEEESCSBTTSCCT--TCE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCCeEEEEEEEeCCEEEEC---eEecccc----cccceeeeeeecccccccc--cee
Confidence            5789999998   499999994   44899999999999999   9999764    3466788888877665443  355


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      +.+..++.||.|+..+..+|||||+|++|+.+++.++|||||..+... ....++++|||...... ..+..|+.+.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~  147 (218)
T d2z7fe1          69 VFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNR-GIASVLQELNVTV  147 (218)
T ss_dssp             EEEEEEEEESCCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSC-CBCSBCEEEEEEE
T ss_pred             eeeeeeEeeeccccccccceEEEeeccccceeeeeeeeeeeccCccccCCCcEEEEeccceeeccc-ccccceeEEEecc
Confidence            668899999999999999999999999999999999999999877665 77889999999988765 5677899999998


Q ss_pred             eChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        261 LSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       261 ~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      .+. .|+.        .+.|+.... ..+.|.|                                               
T Consensus       148 ~~~-~c~~--------~~~~~~~~~~~~~~C~g-----------------------------------------------  171 (218)
T d2z7fe1         148 VTS-LCRR--------SNVCTLVRGRQAGVCFG-----------------------------------------------  171 (218)
T ss_dssp             ECT-TCCT--------TSEEEECTTSCCBCCTT-----------------------------------------------
T ss_pred             ccc-ccce--------eeeeeeecCcccCcccc-----------------------------------------------
Confidence            874 4543        467776655 6678999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhc
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI  414 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~  414 (417)
                                             |+||||++  ++  +|+||+||+..+|+ ....|+|||||+.|++||+++++
T Consensus       172 -----------------------dsG~Pl~~--~~--~l~GI~s~~~~~c~-~~~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         172 -----------------------DSGSPLVC--NG--LIHGIASFVRGGCA-SGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             -----------------------CTTCEEEE--TT--EEEEEEEEESSSTT-CSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             -----------------------ccCCCEEE--CC--EEEEEEEEecCCCC-CCCcCEEEEEhHHhHHHHHHHhC
Confidence                                   99999999  54  59999999877898 78889999999999999999874

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-37  Score=281.89  Aligned_cols=214  Identities=23%  Similarity=0.360  Sum_probs=177.9

Q ss_pred             ecCCCCCCCCCCCCCcceeeEccc---cceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAIRQD---VCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i~~~---~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.+|.+++   |||+|.|...   +|+||||+++|||||   |||+.+.    +.....+.++..+....+. ....
T Consensus         1 i~gG~~a~~~~---~Pw~v~i~~~~~~~C~GtLIs~~~VLTa---AhCv~~~----~~~~~~~~~~~~~~~~~~~-~~~~   69 (225)
T d1a7sa_           1 IVGGRKARPRQ---FPFLASIQNQGRHFCGGALIHARFVMTA---ASCFQSQ----NPGVSTVVLGAYDLRRRER-QSRQ   69 (225)
T ss_dssp             CBSCEECCTTS---STTEEEEEETTEEEEEEEEEETTEEEEC---GGGC--------CCSEEEEESCSSTTSCCT-TTCE
T ss_pred             CCCCEECCCCC---CCcEEEEEECCcEEEEEEEEcCCEEEEC---eeeeeec----cccceeeEEeeeecccccc-cccc
Confidence            57899999984   9999999443   899999999999999   9999764    3356778888877766555 5566


Q ss_pred             EeeeEEEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc-CCCeEEEEEcCccCCCCCCCCccceEEEEEE
Q psy15063        182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKV  260 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~-~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i  260 (417)
                      ..+..++.||.|+.....||||||||++|+.++++++|+||+...... .+..+.++|||.+.... .....|+...+.+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~DIAll~L~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~  148 (225)
T d1a7sa_          70 TFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGG-RLSRFPRFVNVTV  148 (225)
T ss_dssp             EEEEEEEECSSCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTC-CCCSSCEEEEEEE
T ss_pred             eeeeeeeeeeeccccccccccchhhcCCcccccccceeEEeeccccccCCCceeEecccccccccc-ccccceeEEEEEE
Confidence            778889999999999999999999999999999999999998776655 78999999999887655 5677899999999


Q ss_pred             eChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEcc
Q psy15063        261 LSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL  339 (417)
Q Consensus       261 ~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~  339 (417)
                      ++.+.|...        ..|++... ..+.|.|                                               
T Consensus       149 ~~~~~C~~~--------~~~~~~~~~~~~~c~g-----------------------------------------------  173 (225)
T d1a7sa_         149 TPEDQCRPN--------NVCTGVLTRRGGICNG-----------------------------------------------  173 (225)
T ss_dssp             CCGGGSCTT--------EEEEECSSSSCBCCTT-----------------------------------------------
T ss_pred             eehhhcccc--------cceeeecccccccccC-----------------------------------------------
Confidence            999999653        44555444 7789999                                               


Q ss_pred             CCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        340 DGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       340 ~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                             |+||||++  +  ++|+||.||+...|+   ..|+|||||+.|++||+++|+-
T Consensus       174 -----------------------dsG~Pl~~--~--~~l~Gi~S~~~~~c~---~~p~v~t~v~~y~~WI~~~i~~  219 (225)
T d1a7sa_         174 -----------------------DGGTPLVC--E--GLAHGVASFSLGPCG---RGPDFFTRVALFRDWIDGVLNN  219 (225)
T ss_dssp             -----------------------CTTCEEEE--T--TEEEEEEEEECSSTT---SSCEEEEEGGGGHHHHHHHHHS
T ss_pred             -----------------------CCCCCEEE--e--CEEEEEEEECCCCCC---CCCCEEEEHHHHHHHHHHHHCC
Confidence                                   99999999  4  459999999944555   4699999999999999999863

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=304.27  Aligned_cols=214  Identities=19%  Similarity=0.303  Sum_probs=158.1

Q ss_pred             CCcceeeEc-------cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeC
Q psy15063        118 TCDYDVAIR-------QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFH  190 (417)
Q Consensus       118 ~~PW~v~i~-------~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iH  190 (417)
                      +|||+|+|.       .++|+||||+++|||||   |||+....   ....+.|.+|...         +.+.|+++++|
T Consensus        15 e~PW~v~i~~~~~~~~~~~C~GtLIs~~~VLTA---AhCv~~~~---~~~~~~v~~g~~~---------~~~~v~~i~~H   79 (287)
T d1rrka1          15 KQPWQAKISVIRPSKGHESCMGAVVSEYFVLTA---AHCFTVDD---KEHSIKVSVGGEK---------RDLEIEVVLFH   79 (287)
T ss_dssp             HSTTEEEEEECC--CCCEEEEEEECSSSEEEEC---GGGCCTTC---CGGGEEEEETTCS---------SCEEEEEEEEC
T ss_pred             CCCCEEEEEEEECCCCcEEEEEEEecCCEEEEC---hhheecCC---CcceEEEEeCCee---------ceeeeEEEEec
Confidence            799999993       35899999999999999   99996432   3356889998643         34679999999


Q ss_pred             CCCCC---------CCCCCCeEEEEecCCcCCCCceeeeeCCCCCCcc------CCCeEEEEEcCccC------CCCCCC
Q psy15063        191 SHFHP---------FVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF------IGKRGHVVGWGVTS------FPMGEP  249 (417)
Q Consensus       191 P~Y~~---------~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~------~~~~~~v~GWG~~~------~~~~~~  249 (417)
                      |+|+.         ..++||||||||++|++|+++|+|||||......      ....+...+|+...      ......
T Consensus        80 p~y~~~~~~~~~~~~~~~~DIALl~L~~~~~~s~~v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (287)
T d1rrka1          80 PNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEE  159 (287)
T ss_dssp             TTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEES
T ss_pred             CCccccccccccCCCcccccEEEEecccCccccceEEEEecCCccccccccccCCcceEeecCceeecCCCccccccccC
Confidence            99974         3456999999999999999999999999754321      11112222222211      111124


Q ss_pred             CccceEEEEEEeChhhhhh---hh------------hccCCCCeEEecCCC---CCCCccCCCCCcccccccccccccCc
Q psy15063        250 SPTLQKLEVKVLSNARCST---VI------------EESIGIGMLCAAPDE---TQGTCFVPVSPVGYTKKHLQQFHQGT  311 (417)
Q Consensus       250 ~~~L~~~~v~i~~~~~C~~---~~------------~~~~~~~~iCa~~~~---~~~~C~g~~~p~~~t~~~~~~wi~~~  311 (417)
                      ...|+...+.+.+...|..   ..            ...+++.||||+...   +.++|.|                   
T Consensus       160 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~G-------------------  220 (287)
T d1rrka1         160 EKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRG-------------------  220 (287)
T ss_dssp             SSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGG-------------------
T ss_pred             CceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCCCCCC-------------------
Confidence            5678888888887655432   11            115678999998655   5778999                   


Q ss_pred             cccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcC-CCcc
Q psy15063        312 TYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGV-TGCA  390 (417)
Q Consensus       312 ~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~-~~C~  390 (417)
                                                                         ||||||++..+++|+|+||+|||. .+|.
T Consensus       221 ---------------------------------------------------DSGgPL~~~~~~~~~lvGI~S~G~~~~~~  249 (287)
T d1rrka1         221 ---------------------------------------------------DSGGPLIVHKRSRFIQVGVISWGVVDVCK  249 (287)
T ss_dssp             ---------------------------------------------------GTTCEEEEEETTEEEEEEEEEEESCCCC-
T ss_pred             ---------------------------------------------------CccCCeEEecCCeEEEEEEEEecCCcCcC
Confidence                                                               999999999999999999999984 3343


Q ss_pred             c-------cCCCCeEEEecccchhHHhhhhccC
Q psy15063        391 I-------MPSYPDLYTRVSEYIRWIHVNAIVT  416 (417)
Q Consensus       391 ~-------~~~~p~vyt~Vs~~~~WI~~~~~~~  416 (417)
                      .       ....|.|||||+.|++||+++|.-.
T Consensus       250 ~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~~~  282 (287)
T d1rrka1         250 NQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  282 (287)
T ss_dssp             -------CCTTCEEEEEEGGGGHHHHHHHTTTS
T ss_pred             CCCCCCcCCCCCCcEEEEHHHHHHHHHHHhcCC
Confidence            0       1346899999999999999998743

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=4.7e-37  Score=283.83  Aligned_cols=219  Identities=25%  Similarity=0.415  Sum_probs=182.4

Q ss_pred             ecCCCCCCCCCCCCCcceeeE---ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEE
Q psy15063        105 KSPHHPARPSSGLTCDYDVAI---RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVR  181 (417)
Q Consensus       105 ~~~g~~a~~~~~~~~PW~v~i---~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~  181 (417)
                      |++|.++.++   +|||+|.|   ..++|+||||+++|||||   |||+.+.        ............... ..+.
T Consensus         1 i~gG~~~~~~---e~Pw~v~i~~~~~~~C~GtLIs~~~VLTa---AhCv~~~--------~~~~~~~~~~~~~~~-~~~~   65 (237)
T d1gvza_           1 IIGGWECEKH---SKPWQVAVYHQGHFQCGGVLVHPQWVLTA---AHCMSDD--------YQIWLGRHNLSKDED-TAQF   65 (237)
T ss_dssp             CBSCEECCTT---SSTTEEEEEETTEEEEEEEEEETTEEEEC---GGGCCSS--------CEEEESCSBTTSCCT-TCEE
T ss_pred             CCCCEECCCC---CCCcEEEEEECCeEEEEEEEEeCCEEEeC---hhhccCC--------CceeEeeeeeccccC-ccee
Confidence            5788999888   59999999   345999999999999999   9999652        233444444444433 5677


Q ss_pred             EeeeEEEeCCCCCCC-----------CCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCC
Q psy15063        182 RGVRRVLFHSHFHPF-----------VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPS  250 (417)
Q Consensus       182 ~~V~~i~iHP~Y~~~-----------~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~  250 (417)
                      ..+...+.|+.|+..           ...+|||||||++|+.|++.++|+|||..... .+..+++.|||.+.......+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diali~L~~pv~~~~~v~p~~l~~~~~~-~~~~~~~~g~g~~~~~~~~~~  144 (237)
T d1gvza_          66 HQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPK-LGSTCYTSGWGLISTFTNRGS  144 (237)
T ss_dssp             ECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEEEECSCTTTCSEE
T ss_pred             eeeeeEEeeeeeeeeeeecccccCccccccceEEEEECCceecccccccccccccccc-cceeEEEEeeeeecccccccc
Confidence            788999999888542           34699999999999999999999999977655 788999999998876654567


Q ss_pred             ccceEEEEEEeChhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccc
Q psy15063        251 PTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIG  329 (417)
Q Consensus       251 ~~L~~~~v~i~~~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~  329 (417)
                      ..|+++.+++++.+.|...++....+.++|+.... +.+.|.|                                     
T Consensus       145 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------------------------  187 (237)
T d1gvza_         145 GTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLG-------------------------------------  187 (237)
T ss_dssp             EEEEEEEEEEECGGGGCSSCGGGCCTTEEEEECSSTTCEECGG-------------------------------------
T ss_pred             ceeeEEEEEeecHHHHHhhcccccccccccceecccccccccC-------------------------------------
Confidence            78999999999999999998887777888877665 7889999                                     


Q ss_pred             cCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        330 EFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       330 ~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                                                       |+||||++  ++  +|+||+|||...|+ ..+.|.+||||+.|++||
T Consensus       188 ---------------------------------dsG~pl~~--~~--~l~Gv~s~g~~~c~-~~~~p~v~t~v~~y~~WI  229 (237)
T d1gvza_         188 ---------------------------------DSGGALIC--DG--VFQGITSWGYSECA-DFNDNFVFTKVMPHKKWI  229 (237)
T ss_dssp             ---------------------------------GTTCEEEE--TT--EEEEEECCCSSSCE-ETTTSCCEEESGGGHHHH
T ss_pred             ---------------------------------CCCCcEEE--cC--EEEEEEEeccCCCC-CCCCCeEEEEHHHHHHHH
Confidence                                             99999999  54  59999999976787 678999999999999999


Q ss_pred             hhhhc
Q psy15063        410 HVNAI  414 (417)
Q Consensus       410 ~~~~~  414 (417)
                      +++|.
T Consensus       230 ~~~i~  234 (237)
T d1gvza_         230 KETIE  234 (237)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99985

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-37  Score=282.73  Aligned_cols=209  Identities=28%  Similarity=0.465  Sum_probs=156.8

Q ss_pred             CcceeeEc---cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeE---------
Q psy15063        119 CDYDVAIR---QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRR---------  186 (417)
Q Consensus       119 ~PW~v~i~---~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~---------  186 (417)
                      .||+|+|.   .++|+||||+++|||||   |||+.+        ...+++|...+..... ..+...+..         
T Consensus         3 ~Pw~v~i~~~~~~~C~GtLIs~~~VLTa---AhCv~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   70 (228)
T d1sgfa_           3 QPWHVAVYRFNKYQCGGVLLDRNWVLTA---AHCYND--------KYQVWLGKNNFLEDEP-SDQHRLVSKAIPHPDFNM   70 (228)
T ss_dssp             CTTEEEEECTTSCCEEEEECSSSEEEEC---GGGCCS--------CCEEEECC----C-CT-TCEEEEEEEEEECTTSCG
T ss_pred             CCcEEEEEECCcEEEEEEEEcCCEEEeC---HHHccC--------CceEEEeeeeeccccc-cceeeeeeeeccccceee
Confidence            69999994   45899999999999999   999964        3568888877655433 333333333         


Q ss_pred             --EEeCCCCCCCCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChh
Q psy15063        187 --VLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNA  264 (417)
Q Consensus       187 --i~iHP~Y~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~  264 (417)
                        +..||.|+.....+|||||+|++|+.|+++++|||||..... ....+++.|||.+.......+..|+...+.+++++
T Consensus        71 ~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~v~pi~l~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~  149 (228)
T d1sgfa_          71 SLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPK-LGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNE  149 (228)
T ss_dssp             GGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCCC-TTCEEEEC-------C---------CEEEEEECTH
T ss_pred             eeecccCCCCccccccceeEEeeccccccCCceeeEecCccccc-cCcceEEEeeeeccCCccCCCCccEEEEEEEeCHH
Confidence              558999999999999999999999999999999999988766 67889999999887666567888999999999999


Q ss_pred             hhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCee
Q psy15063        265 RCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMF  343 (417)
Q Consensus       265 ~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~  343 (417)
                      .|+..+.....+.++|+.... +...|.+                                                   
T Consensus       150 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------  178 (228)
T d1sgfa_         150 DCDKAHEMKVTDAMLCAGEMDGGSYTCEH---------------------------------------------------  178 (228)
T ss_dssp             HHHTTCSSBCCTTEEEEEECSSSEEECCC---------------------------------------------------
T ss_pred             HhhhhccCCcccceEEeccCCCCccccCC---------------------------------------------------
Confidence            999888777777888887766 5678888                                                   


Q ss_pred             eeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhhhhcc
Q psy15063        344 FCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV  415 (417)
Q Consensus       344 ~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~~~~~  415 (417)
                                         |+|+||++  ++  +|+||+|||..+|. ..+.|+|||||+.|++||+++|+-
T Consensus       179 -------------------d~G~pl~~--~~--~l~Gv~S~g~~~c~-~~~~p~vyt~V~~~~~WI~~~i~~  226 (228)
T d1sgfa_         179 -------------------DSGGPLIC--DG--ILQGITSWGPEPCG-EPTEPSVYTKLIKFSSWIRETMAN  226 (228)
T ss_dssp             -------------------CTTCEEEE--TT--EEEEEECCCCSSCC-CSSCCEEEEESGGGHHHHHHHHHS
T ss_pred             -------------------CcCCcEEE--eC--EEEEEEEECCCCCC-CCCCCeEEEEHHHHHHHHHHHHhH
Confidence                               99999998  44  69999999977887 688999999999999999999864

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.87  E-value=1.6e-24  Score=196.40  Aligned_cols=194  Identities=13%  Similarity=0.113  Sum_probs=133.3

Q ss_pred             CCcceeeEc----cccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCC
Q psy15063        118 TCDYDVAIR----QDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHF  193 (417)
Q Consensus       118 ~~PW~v~i~----~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y  193 (417)
                      .|||...++    ...|+|+||+++|||||   |||+.+.........+.+.+|..+...    ......+.+++.||.|
T Consensus        16 ~~P~~~~~~i~~~~~~CsG~LI~~~~VLTa---aHCv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   88 (215)
T d1p3ca_          16 VAPYNSIAYITFGGSSCTGTLIAPNKILTN---GHCVYNTASRSYSAKGSVYPGMNDSTA----VNGSANMTEFYVPSGY   88 (215)
T ss_dssp             STTGGGEEEEECSSCEEEEEEEETTEEEEC---HHHHEETTTTEECCCCEEEETCBTTBC----TTCCEEEEEEECCHHH
T ss_pred             CCCcEEEEEEEcCCeEEEEEEEeCCEEEEC---cceeccCCCCceeeeEEEeccccCCCC----CceeEEEeEEEEeccc
Confidence            589976553    35899999999999999   999977655544456788888765543    3345678999999998


Q ss_pred             CC-CCCCCCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCCCCccceEEEEEEeChhhhhhhhhc
Q psy15063        194 HP-FVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE  272 (417)
Q Consensus       194 ~~-~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~  272 (417)
                      .. ....+|||||+|+.++.+.  ..+++++..... .++.+++.||+...... .....+...........        
T Consensus        89 ~~~~~~~~DiAll~l~~~~~~~--~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~--------  156 (215)
T d1p3ca_          89 INTGASQYDFAVIKTDTNIGNT--VGYRSIRQVTNL-TGTTIKISGYPGDKMRS-TGKVSQWEMSGSVTRED--------  156 (215)
T ss_dssp             HHHCCGGGCCEEEEESSCHHHH--HCCCCBCCCSCC-TTCEEEEEECCHHHHHH-HSSCCCEEEEEECCEEC--------
T ss_pred             ccCCCccceEEEEEeccCCCcc--cccccccccccc-CCceeEEEcCCCCcCCC-cccceeeEeeecccccc--------
Confidence            54 3457899999999987643  455666665444 78999999999754322 11222222222111111        


Q ss_pred             cCCCCeEEecCCCCCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCCeeeeeeEEecC
Q psy15063        273 SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNE  352 (417)
Q Consensus       273 ~~~~~~iCa~~~~~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~  352 (417)
                          ...+..   ..+.|.|                                                            
T Consensus       157 ----~~~~~~---~~~~~~G------------------------------------------------------------  169 (215)
T d1p3ca_         157 ----TNLAYY---TIDTFSG------------------------------------------------------------  169 (215)
T ss_dssp             ----SSEEEE---CCCCCTT------------------------------------------------------------
T ss_pred             ----ccccee---ecccCCC------------------------------------------------------------
Confidence                111111   3467888                                                            


Q ss_pred             ceeeeccccccCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHHhh
Q psy15063        353 HFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV  411 (417)
Q Consensus       353 ~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI~~  411 (417)
                                ||||||+.   ..+.|+||.|+| .+|......|.+|++|..|++||++
T Consensus       170 ----------~SGgPl~~---~~~~lvGi~s~g-~~~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         170 ----------NSGSAMLD---QNQQIVGVHNAG-YSNGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             ----------CTTCEEEC---TTSCEEEECCEE-EGGGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             ----------CccCeEEC---CCCEEEEEEEec-cCCCCCCCCeEEEeEHHHHHHHHHc
Confidence                      99999994   334599999998 5554123458899999999999987

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.85  E-value=6.2e-23  Score=192.63  Aligned_cols=182  Identities=12%  Similarity=0.024  Sum_probs=109.4

Q ss_pred             ccccceEEEee------CCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCC
Q psy15063        126 RQDVCAVRIEF------EKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLS  199 (417)
Q Consensus       126 ~~~~C~GtLIs------~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~  199 (417)
                      ..++|+||||+      ++|||||   |||+.+.    ....+.+.+|.+......    ....+.+..+|+.|+.....
T Consensus        32 g~~~CGGsLI~~~~~~~~~~VLTA---AHCv~~~----~~~~~~v~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  100 (263)
T d1arba_          32 GTLACTGSLVNNTANDRKMYFLTA---HHCGMGT----ASTAASIVVYWNYQNSTC----RAPNTPASGANGDGSMSQTQ  100 (263)
T ss_dssp             TEEEEEEEEBCCTTCCCCCEEEEE---GGGSCCS----HHHHHTCEEEESCCCSSC----CCTTSGGGGSCCCCCCCCEE
T ss_pred             CcEEEEEEEECCCCCCccceEEEc---hhhCCCC----CCcceEEEEEEEeecccc----eeeeeeeeecccCccceeee
Confidence            35699999998      6799999   9999653    223345555554443321    12224445567777655544


Q ss_pred             -----------CCeEEEEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCccCCCCCC------CCccceEEEEEEeC
Q psy15063        200 -----------NDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGE------PSPTLQKLEVKVLS  262 (417)
Q Consensus       200 -----------nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~~~~~~~------~~~~L~~~~v~i~~  262 (417)
                                 +||||++|+.+++....                 +...+|+.+......      ....++.  +....
T Consensus       101 ~~~~l~~~~~~~Diall~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  161 (263)
T d1arba_         101 SGSTVKATYATSDFTLLELNNAANPAFN-----------------LFWAGWDRRDQNYPGAIAIHHPNVAEKR--ISNST  161 (263)
T ss_dssp             ECEEEEEEETTTTEEEEEESSCCCGGGC-----------------CEEBCEECCSCCCSCEEEEECGGGCSCE--EEEEC
T ss_pred             cchheeecCCCcceeeeecccccccccc-----------------eeeeccCccccCCccccceeccccceee--eeccc
Confidence                       45555555555443322                 333344433321100      0011111  12222


Q ss_pred             hhhhhhhhhccCCCCeEEecCCC-CCCCccCCCCCcccccccccccccCccccCCcceeecccccccccCCcEEEEccCC
Q psy15063        263 NARCSTVIEESIGIGMLCAAPDE-TQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG  341 (417)
Q Consensus       263 ~~~C~~~~~~~~~~~~iCa~~~~-~~~~C~g~~~p~~~t~~~~~~wi~~~~~~~~~~~~~~G~~~~~~~~p~~~~~~~~~  341 (417)
                      ...|...+...+...|+|+.... ..+.|.|                                                 
T Consensus       162 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~G-------------------------------------------------  192 (263)
T d1arba_         162 SPTSFVAWGGGAGTTHLNVQWQPSGGVTEPG-------------------------------------------------  192 (263)
T ss_dssp             SCCEEECTTSSSCSSEEEEECCTTSCCCCTT-------------------------------------------------
T ss_pred             ccchhhccCCCCCccEEEEEecCCCccccCC-------------------------------------------------
Confidence            22333344447788999999777 6789999                                                 


Q ss_pred             eeeeeeEEecCceeeeccccccCCCceEEeeCCeEEEEeEEEEcCC---CccccCCCCeEEEecccchhHHhhh
Q psy15063        342 MFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVT---GCAIMPSYPDLYTRVSEYIRWIHVN  412 (417)
Q Consensus       342 ~~~Cggsli~~~~vLtaAhC~dsGgPL~~~~~g~~~l~GI~S~g~~---~C~~~~~~p~vyt~Vs~~~~WI~~~  412 (417)
                                           ||||||++. +++  ++||+|+|..   +|+  .+.|+||+||+.|..||...
T Consensus       193 ---------------------DSGGPL~~~-~g~--~vGvvsgg~s~c~~c~--~~~p~vYtrV~~~~~~~~~~  240 (263)
T d1arba_         193 ---------------------SSGSPIYSP-EKR--VLGQLHGGPSSCSATG--TNRSDQYGRVFTSWTGGGAA  240 (263)
T ss_dssp             ---------------------CTTCEEECT-TSC--EEEEEEECSCCTTCCG--GGSEEEEEEHHHHHHTTSSG
T ss_pred             ---------------------CCcceEEec-CCC--EEEEEEEEEeCCcCCC--CCCCceEEEEEEeeccCCcc
Confidence                                 999999864 455  8899998863   456  56899999999987776443

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.40  E-value=1.4e-12  Score=117.14  Aligned_cols=102  Identities=9%  Similarity=-0.011  Sum_probs=60.2

Q ss_pred             ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEe
Q psy15063        128 DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL  207 (417)
Q Consensus       128 ~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL  207 (417)
                      +.|+|+||++++||||   |||+.+.....  ..+.+............   ..........      ....+|+|||+|
T Consensus        34 ~~cTG~lI~~~~vLTA---aHcv~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~D~all~l   99 (216)
T d2o8la1          34 FIASGVVVGKDTLLTN---KHVVDATHGDP--HALKAFPSAINQDNYPN---GGFTAEQITK------YSGEGDLAIVKF   99 (216)
T ss_dssp             EEEEEEEEETTEEEEC---HHHHHTTTTCG--GGEEEEETCCBTTBCTT---CCEEEEEEEE------CSSSSCCEEEEE
T ss_pred             EEEEEEEEeCCEEEEe---eeeeccCCCce--EEEEEEecccccceeee---eeEEeeeeec------cccCCceEEEEe
Confidence            3899999999999999   99997753322  34444444433322211   1111222221      123579999999


Q ss_pred             cCCcCCCCceeeee---CCCCCCccCCCeEEEEEcCccC
Q psy15063        208 DRPVPLTGTIQPVC---LPQKGESFIGKRGHVVGWGVTS  243 (417)
Q Consensus       208 ~~pv~~s~~v~Pic---Lp~~~~~~~~~~~~v~GWG~~~  243 (417)
                      +.+........+.+   +........+....+.||....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~  138 (216)
T d2o8la1         100 SPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDK  138 (216)
T ss_dssp             CCCTTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTS
T ss_pred             cccccccccccceeeeeccccccccCCceeEEEEccCCC
Confidence            98776554433333   3333222267788899987543

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.40  E-value=5.1e-13  Score=122.67  Aligned_cols=115  Identities=16%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             CCccee--eE---ccccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCC-CCcEEEeeeEEEeCC
Q psy15063        118 TCDYDV--AI---RQDVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNE-TSHVRRGVRRVLFHS  191 (417)
Q Consensus       118 ~~PW~v--~i---~~~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~-~~~q~~~V~~i~iHP  191 (417)
                      .+||..  .+   ....|+|+||++++||||   |||+......  ...+.+..+......... .....+.+..+..+|
T Consensus        40 ~~p~~~v~~i~~~g~~~gTG~lI~~~~ILTa---~Hvv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (242)
T d1agja_          40 KYPYNTIGNVFVKGQTSATGVLIGKNTVLTN---RHIAKFANGD--PSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP  114 (242)
T ss_dssp             STTGGGEEEEEETTTEEEEEEECSSSEEEEC---HHHHGGGTTC--GGGEEEEETCEECTTSCEECTTCCEEEEEEESCT
T ss_pred             cCCcccEEEEEeCCCccEEEEEEeCCEEEEc---ccEeccCCCc--eEEEEEeecceecccceeeeccceEEEEEEeeec
Confidence            467774  44   334899999999999999   9999653222  133333333222211110 022344566666554


Q ss_pred             CCCCCCCCCCeEEEEecCCcC---CCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        192 HFHPFVLSNDIALLQLDRPVP---LTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       192 ~Y~~~~~~nDIALLkL~~pv~---~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      .    ...+|||||+|+.+..   +...+.|+.|........++.++++||..
T Consensus       115 ~----~~~~D~All~l~~~~~~~~~~~~~~~~~l~~s~~~~~G~~v~~~GyP~  163 (242)
T d1agja_         115 F----GAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF  163 (242)
T ss_dssp             T----CTTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCT
T ss_pred             C----CCcCcEEEEEeccccccccccccCcceeecccccccCCcEEEEEEcCC
Confidence            3    2357999999987643   33467888887655433799999999975

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.34  E-value=4.6e-13  Score=116.99  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                      ||||||+.  +++  ++||+|+| .+|. ....+.+|++|+.++++.
T Consensus       142 DSGgPl~~--~~~--~vGi~s~g-~~~~-~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         142 DSGGAHFA--GSV--ALGIHSGS-SGCS-GTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             CTTCEEEE--TTE--EEEEEEEE-SCCB-TTBCCCEEEEHHHHHHHH
T ss_pred             CCCCeEEE--CCE--EEEEEEEE-ecCC-CCCCCEEEEEHHHHHHHh
Confidence            99999997  666  99999999 6666 477899999999988764

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.6e-13  Score=121.24  Aligned_cols=47  Identities=38%  Similarity=0.664  Sum_probs=44.5

Q ss_pred             ceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        318 RRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       318 ~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      .||++|.+|.+++|||+|+|+.++.++|+||||+++||||||||+..
T Consensus         1 ~ri~gG~~a~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~   47 (240)
T d1mzaa_           1 MEIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYR   47 (240)
T ss_dssp             CCCCCCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCT
T ss_pred             CEEECCEECCCCCCCcEEEEEECCeEEEEEEEEeCCEEEECeEcccc
Confidence            38999999999999999999999999999999999999999999954

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.7e-12  Score=117.75  Aligned_cols=46  Identities=39%  Similarity=0.764  Sum_probs=43.1

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.++..++|||+|+|+.++.++|+||||+++||||||||+..-
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTaAhCv~~~   46 (237)
T d1ao5a_           1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQ   46 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCCSS
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEeeCCEEEECHHHcCCC
Confidence            5789999999999999999999999999999999999999999543

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.7e-12  Score=117.31  Aligned_cols=45  Identities=42%  Similarity=0.701  Sum_probs=42.5

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|+|+.++.++|+||||++|||||||||+..
T Consensus         1 ivgG~~a~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~   45 (232)
T d1orfa_           1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN   45 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCCC
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEecCCEEEEChhhcCC
Confidence            579999999999999999999999999999999999999999844

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.4e-12  Score=114.86  Aligned_cols=48  Identities=38%  Similarity=0.639  Sum_probs=44.3

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP  367 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgP  367 (417)
                      |++|.+|.+++|||+|.|+.++.++|+||||+++||||||||+.....
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~   48 (225)
T d1npma_           1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQKYS   48 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSCE
T ss_pred             CCCCEECCCCCCCCEEEEEECCcEEEEEEEEcCCEEEEchHhCccccc
Confidence            579999999999999999999999999999999999999999965443

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3e-12  Score=115.11  Aligned_cols=46  Identities=41%  Similarity=0.790  Sum_probs=41.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |+||.+|..++|||+|.|+.++.++|+||||+++||||||||++..
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~   46 (225)
T d1a7sa_           1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQ   46 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC---
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEEcCCEEEECeeeeeec
Confidence            5799999999999999999999999999999999999999999553

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.8e-12  Score=114.06  Aligned_cols=46  Identities=39%  Similarity=0.806  Sum_probs=43.1

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.+|..++|||+|.|+.++.++|+||||+++||||||||+...
T Consensus         1 I~gG~~~~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~   46 (228)
T d1bioa_           1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDA   46 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGGGC
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEEeCCEEEECceeeecc
Confidence            5789999999999999999999999999999999999999999543

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.5e-12  Score=114.57  Aligned_cols=45  Identities=40%  Similarity=0.797  Sum_probs=42.6

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|+.++|||+|.|+.++.++|+||||+++||||||||+..
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~   45 (221)
T d1lo6a_           1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKP   45 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCT
T ss_pred             CCCCEECCCCCCCCEEEEEECCcEEEEEEEEeCCEEEECeecccc
Confidence            579999999999999999999999999999999999999999843

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.1e-12  Score=115.85  Aligned_cols=45  Identities=42%  Similarity=0.854  Sum_probs=42.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|..|.+++|||+|.|+.++.++|+||||+++||||||||+..
T Consensus         1 iigG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~   45 (254)
T d2bz6h1           1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDK   45 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEeCCCEEEECcccccC
Confidence            589999999999999999999999999999999999999999954

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.18  E-value=8e-12  Score=112.94  Aligned_cols=48  Identities=46%  Similarity=0.775  Sum_probs=44.3

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP  367 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgP  367 (417)
                      |+||.++.+++|||+|.|+.++.++|+||||++|||||||||+.+...
T Consensus         1 i~gG~~~~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~   48 (237)
T d1gvza_           1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDYQ   48 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSCE
T ss_pred             CCCCEECCCCCCCcEEEEEECCeEEEEEEEEeCCEEEeChhhccCCCc
Confidence            579999999999999999999999999999999999999999965443

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=99.18  E-value=4.2e-12  Score=114.08  Aligned_cols=47  Identities=47%  Similarity=0.812  Sum_probs=43.5

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      |+||.++.+++|||+|.|+.++.++|+||||+++||||||||+....
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTaAhC~~~~~   47 (224)
T d1gdna_           1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYA   47 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSC
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEEeCCEEEECcccceecc
Confidence            57999999999999999999999999999999999999999985443

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.2e-12  Score=112.88  Aligned_cols=47  Identities=36%  Similarity=0.743  Sum_probs=43.7

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      |++|.+|.+++|||+|.|+.++.++|+||||+++||||||||+....
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~G~LIs~~~VLTaAhC~~~~~   47 (218)
T d2z7fe1           1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVN   47 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSC
T ss_pred             CCCCEECCCCCCCcEEEEEECCCeEEEEEEEeCCEEEECeEeccccc
Confidence            57899999999999999999999999999999999999999996543

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=99.17  E-value=6.4e-12  Score=113.24  Aligned_cols=50  Identities=42%  Similarity=0.797  Sum_probs=45.4

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCCceE
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT  369 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGgPL~  369 (417)
                      |++|.+|..++|||+|.|+.++.++|+||||+++||||||||+....++.
T Consensus         1 i~gG~~a~~~~~Pw~V~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~   50 (226)
T d1azza_           1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVD   50 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTTCSCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEeeCCEEEEChhhccCCcceE
Confidence            57999999999999999999999999999999999999999996655543

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=99.15  E-value=8.5e-12  Score=112.91  Aligned_cols=46  Identities=48%  Similarity=0.762  Sum_probs=43.0

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|..|.+++|||+|.|+..+.++|+|+||++|||||||||+..-
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~C~G~LIs~~~VLTaAhCv~~~   46 (234)
T d1op0a_           1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTD   46 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSS
T ss_pred             CCCCEECCCCCcCcEEEEEECCcEEEEEEEEcCCEEEECceeCCCC
Confidence            5899999999999999999999999999999999999999998443

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.14  E-value=6.8e-12  Score=113.39  Aligned_cols=43  Identities=35%  Similarity=0.868  Sum_probs=41.6

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI  362 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~  362 (417)
                      |++|.+|..++|||+|.|+.++.++|+||||++|||||||||+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv   43 (235)
T d1ekbb_           1 IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCV   43 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHH
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEEcCCEEEEChhhc
Confidence            5799999999999999999999999999999999999999998

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.14  E-value=1.3e-11  Score=111.48  Aligned_cols=45  Identities=38%  Similarity=0.761  Sum_probs=40.7

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      |++|..|.+++|||+|.|+.  +++|+||||++|||||||||+.+.-
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~--~~~C~GtLIs~~~VLTaAhCv~~~~   45 (235)
T d1tona_           1 IVGGYKCEKNSQPWQVAVIN--EYLCGGVLIDPSWVITAAHCYSNNY   45 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES--SSEEEEEEEETTEEEECGGGCCSCC
T ss_pred             CCCCEECCCCCCCeEEEEcC--CeEEEEEEecCCEEEECceecCCCC
Confidence            58999999999999999984  5899999999999999999996543

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=99.13  E-value=8.2e-12  Score=111.74  Aligned_cols=45  Identities=42%  Similarity=0.851  Sum_probs=42.5

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|..++|||+|.|+.++.++|+||||+++||||||||+..
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~   45 (222)
T d1eq9a_           1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDG   45 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEEeCCEEEECceeccc
Confidence            578999999999999999999999999999999999999999953

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-11  Score=113.64  Aligned_cols=45  Identities=47%  Similarity=1.020  Sum_probs=42.5

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|..++|||+|.|+.++.++|+||||+++||||||||+..
T Consensus         1 i~gG~~~~~~e~Pw~v~I~~~~~~~C~GtLIs~~~VLTaAhCv~~   45 (255)
T d1z8ga1           1 IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPE   45 (255)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCCG
T ss_pred             CCCCEECCCCCcCcEEEEEECCcEEEEEEEEeCCEEEECceecCC
Confidence            578999999999999999999999999999999999999999944

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=99.13  E-value=1.2e-11  Score=111.12  Aligned_cols=44  Identities=43%  Similarity=0.797  Sum_probs=40.1

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+|.|. ++.++|+||||+++||||||||+..
T Consensus         1 i~gG~~~~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTAAhCv~~   44 (222)
T d1hj8a_           1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHCYKS   44 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCS
T ss_pred             CCCCEECCCCCCCeEEEEE-CCCEEEEEEEeeCCEEEeCceeccc
Confidence            5899999999999999995 5668999999999999999999954

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-11  Score=110.32  Aligned_cols=49  Identities=41%  Similarity=0.819  Sum_probs=42.9

Q ss_pred             eecccccccccCCcEEEEccC-CeeeeeeEEecCceeeeccccccCCCce
Q psy15063        320 IILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMTGGPL  368 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~-~~~~Cggsli~~~~vLtaAhC~dsGgPL  368 (417)
                      |++|.+|+.++|||+|.|+.. +.++|+||||++|||||||||+....+.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhCv~~~~~~   50 (233)
T d2p3ub1           1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRF   50 (233)
T ss_dssp             CBSSEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSCSSC
T ss_pred             CCCCEECCCCCCCcEEEEEecCCCeEEEEEEEeCCEEEECceeccccccc
Confidence            579999999999999999765 4689999999999999999999654443

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.12  E-value=1.5e-11  Score=110.25  Aligned_cols=44  Identities=39%  Similarity=0.836  Sum_probs=40.1

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|..++|||+|.|+ ++.++|+||||++|||||||||+.+
T Consensus         1 i~GG~~a~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTaAhC~~~   44 (223)
T d1hj9a_           1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKS   44 (223)
T ss_dssp             CCSCEECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCS
T ss_pred             CCCCEECCCCCCCeEEEEE-CCCEEEEEEEeeCCEEEeCeeECCC
Confidence            5789999999999999995 5678999999999999999999954

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=99.12  E-value=1.1e-11  Score=111.80  Aligned_cols=46  Identities=41%  Similarity=0.850  Sum_probs=41.2

Q ss_pred             eecccccccccCCcEEEEcc----CCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |++|.+|.+++|||+|+|+.    ++.++|+||||++|||||||||+...
T Consensus         1 i~~G~~a~~ge~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~~   50 (230)
T d2hlca_           1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDA   50 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTTE
T ss_pred             CCCCEECCCCCCCCEEEEEEEecCCCeeEEEEEEEeCCEEEEeeeccccc
Confidence            57999999999999999964    56789999999999999999999543

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.3e-11  Score=111.16  Aligned_cols=44  Identities=43%  Similarity=0.936  Sum_probs=41.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++.+++|||+|.|+..+.++|+||||++|||||||||+.
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~C~GtLI~~~~VLTaAhCv~   44 (235)
T d1rfna_           1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVE   44 (235)
T ss_dssp             CBTCEECCTTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCcCCEEEEecCCCEEEEEEEeeCCEEEEChhhcC
Confidence            57899999999999999999889999999999999999999983

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.9e-11  Score=111.15  Aligned_cols=47  Identities=43%  Similarity=0.809  Sum_probs=42.9

Q ss_pred             cceeecccccccccCCcEEEEcc-CCeeeeeeEEecCceeeecccccc
Q psy15063        317 RRRIILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~-~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      ..|+++|..|.+++|||+|.|+. ++.++|+||||+++||||||||+.
T Consensus        15 ~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~   62 (247)
T d1rjxb_          15 PGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLE   62 (247)
T ss_dssp             CTTSTTCEECCTTSSTTEEEEEETTCCEEEEEEEEETTEEEEEGGGGT
T ss_pred             CCeEECCEECCCCCCCcEEEEEECCCCEEEEEEEEeCCEEEeeeEEEE
Confidence            46899999999999999999966 457899999999999999999993

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3e-11  Score=109.23  Aligned_cols=50  Identities=36%  Similarity=0.644  Sum_probs=43.7

Q ss_pred             eecccccccccCCcEEEEccC-CeeeeeeEEecCceeeeccccccCCCceE
Q psy15063        320 IILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMTGGPLT  369 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~-~~~~Cggsli~~~~vLtaAhC~dsGgPL~  369 (417)
                      |++|..|..++|||+|.|+.. ..+.|+||||+++||||||||+....++.
T Consensus         1 i~~G~~~~~~e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~   51 (240)
T d1autc_           1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLL   51 (240)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSSCSCCE
T ss_pred             CCCCEECCCCCCCCEEEEEECCCCEEEEEEEEeCCEEEECceeccCcccce
Confidence            579999999999999999764 56899999999999999999997655544

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.5e-11  Score=110.02  Aligned_cols=45  Identities=29%  Similarity=0.654  Sum_probs=40.6

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      +++|..+.. +|||+|+|++++.|+|+||||++|||||||||+...
T Consensus         1 ~~~g~~~~~-~~~w~vsi~~~~~~~C~GtLIs~~~VLTaAhCv~~~   45 (234)
T d1si5h_           1 VVNGIPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSR   45 (234)
T ss_dssp             CBSCEECSS-CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSS
T ss_pred             CCCCEeCCC-CcCeEEEEEECCcEEEEEEEEeCCEEEECcCccCCC
Confidence            578889976 599999999999999999999999999999999543

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.2e-11  Score=112.36  Aligned_cols=41  Identities=51%  Similarity=0.804  Sum_probs=38.4

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI  362 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~  362 (417)
                      |++|.+|++++|||+|+|+  +.++|+||||+++||||||||+
T Consensus         1 i~gG~~~~~g~~Pw~v~i~--~~~~C~GtLIs~~~VLTaAhCv   41 (242)
T d1q3xa1           1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV   41 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEC--SSSSEEEEEETTTEEEECHHHH
T ss_pred             CCCCEECCCCCcCcEEEEc--CCCEEEEEEEcCCEEEEChhhc
Confidence            6899999999999999997  4579999999999999999998

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=2.6e-11  Score=109.02  Aligned_cols=44  Identities=39%  Similarity=0.849  Sum_probs=40.0

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      +++|.++.+++|||+|.|+ .+.++|+||||++|||||||||+..
T Consensus         1 i~gG~~~~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTaAhCv~~   44 (223)
T d1j16a_           1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKS   44 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCS
T ss_pred             CCCCEECCCCCCCcEEEEe-CCCEEEEEEEEcCCEEEeCHHHCCC
Confidence            5789999999999999995 5678999999999999999999944

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=3e-11  Score=108.47  Aligned_cols=44  Identities=43%  Similarity=0.681  Sum_probs=39.5

Q ss_pred             eecccccccccCCcEEEEcc---CCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~---~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|..++|||+|.|..   +..++|+||||+++||||||||+.
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhC~~   47 (224)
T d1eufa_           1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLG   47 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSSSEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCCcEEEEEEEEcCCEEEeeceecc
Confidence            57899999999999999953   456899999999999999999984

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.5e-11  Score=109.15  Aligned_cols=44  Identities=41%  Similarity=0.651  Sum_probs=39.7

Q ss_pred             eecccccccccCCcEEEEcc---CCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~---~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|..++|||+|+|+.   ++.+.|+||||+++||||||||+.
T Consensus         1 iigG~~a~~~~~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTaAhC~~   47 (227)
T d1fq3a_           1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWG   47 (227)
T ss_dssp             CBTCBCCCTTSCTTEEECCEEETTEEECCEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCCcEEEEEEEEeCCEEEeCEeecc
Confidence            58999999999999999853   456899999999999999999994

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.1e-11  Score=107.07  Aligned_cols=48  Identities=40%  Similarity=0.716  Sum_probs=42.0

Q ss_pred             eecccccccccCCcEEEEcc---CCeeeeeeEEecCceeeeccccccCCCc
Q psy15063        320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIMTGGP  367 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~---~~~~~Cggsli~~~~vLtaAhC~dsGgP  367 (417)
                      |++|.+|..++|||+|.|+.   ++.++|+||||+++||||||||+....+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~   51 (221)
T d1fuja_           1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQ   51 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBTTCCCEEEEEEETTEEEECGGGGSSSCG
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCCEEEEEEEEeCCEEEEeeEEEeecCC
Confidence            57899999999999999974   3458999999999999999999966543

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=99.06  E-value=3.8e-11  Score=108.04  Aligned_cols=47  Identities=40%  Similarity=0.812  Sum_probs=41.6

Q ss_pred             eecccccccccCCcEEEEcc-CCeeeeeeEEecCceeeeccccccCCC
Q psy15063        320 IILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~-~~~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      |+||..|..++|||+|.|.. ++.++|+||||+++||||||||+..-.
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~   48 (228)
T d1fxya_           1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAK   48 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTSCS
T ss_pred             CCCCEECCCCCCCcEEEEEEcCCCeEEEEEEeeCCEEEECceeeeccc
Confidence            57899999999999999866 457899999999999999999995543

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.05  E-value=4.3e-11  Score=107.63  Aligned_cols=44  Identities=39%  Similarity=0.580  Sum_probs=39.5

Q ss_pred             eecccccccccCCcEEEEcc----CCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |+||.+|..++|||+|+|..    ...++|+||||+++||||||||+.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaA~C~~   48 (224)
T d3rp2a_           1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG   48 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCC
T ss_pred             CCCCEECcCCCCCCEEEEEEEeCCCCeEEEEEEEEcCCeeEecccccc
Confidence            57999999999999999954    346899999999999999999983

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.8e-11  Score=107.89  Aligned_cols=44  Identities=39%  Similarity=0.881  Sum_probs=39.5

Q ss_pred             eecccccccccCCcEEEEccC---CeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~---~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.++.+++|||+|.|+..   ..++|+||||++|||||||||+.
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~   47 (237)
T d1xx9a_           1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY   47 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGT
T ss_pred             CCCCEECCCCCCCcEEEEEECCCCccEEEEEEEEeCCEEEeCeEeee
Confidence            579999999999999999653   35799999999999999999984

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.6e-11  Score=108.05  Aligned_cols=45  Identities=36%  Similarity=0.824  Sum_probs=40.7

Q ss_pred             eecccccccccCCcEEEEccC-CeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~-~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|..++|||+|.|+.. +.++|+||||+++||||||||+..
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaA~Cv~~   46 (241)
T d1eaxa_           1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYID   46 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCC
T ss_pred             CCCCEECCCCCCCcEEEEEECCCCEEEEEEEEcCCEEEECeeeeec
Confidence            579999999999999999764 567999999999999999999944

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.4e-11  Score=106.34  Aligned_cols=42  Identities=38%  Similarity=0.633  Sum_probs=37.5

Q ss_pred             cccccccccCCcEEEEcc----CCeeeeeeEEecCceeeecccccc
Q psy15063        322 LGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       322 ~G~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      ||..|.+++|||+|+|+.    .+.++|+|+||+++||||||||+.
T Consensus         1 GG~~a~~~e~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhCv~   46 (224)
T d1nn6a_           1 GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG   46 (224)
T ss_dssp             CCEECCTTSSTTEEEEEEECTTSCEEEEEEEEEETTEEEECGGGCC
T ss_pred             CCcCCcCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEehhhccc
Confidence            688999999999999954    346899999999999999999993

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=5.5e-11  Score=106.92  Aligned_cols=44  Identities=45%  Similarity=0.673  Sum_probs=38.9

Q ss_pred             eecccccccccCCcEEEEcc----CCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|.+++|||+|+|..    .+.++|+||||+++||||||||+.
T Consensus         1 I~gG~~a~~ge~P~~v~i~~~~~~~~~~~C~GtLI~~~~VLTaAhC~~   48 (227)
T d1fi8a_           1 IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSG   48 (227)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECTTC-CCEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEEeccccc
Confidence            57999999999999999953    345799999999999999999984

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.7e-11  Score=106.45  Aligned_cols=44  Identities=43%  Similarity=0.654  Sum_probs=39.8

Q ss_pred             eecccccccccCCcEEEEcc---CCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~---~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |++|.+|..++|||+|.|+.   ++.++|+||||+++||||||||+.
T Consensus         1 IvgG~~a~~~e~Pw~v~i~~~~~~~~~~C~GtlI~~~~VLTaAhC~~   47 (224)
T d1t32a1           1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWG   47 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESSSTTSCEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCCCEEEEEEEEcCCEEEEeEEccc
Confidence            68999999999999999964   346899999999999999999984

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=8.5e-11  Score=105.95  Aligned_cols=47  Identities=32%  Similarity=0.652  Sum_probs=40.3

Q ss_pred             eecccccccccCCcEEEEcc--CC--eeeeeeEEecCceeeeccccccCCC
Q psy15063        320 IILGGEADIGEFPWQVAIAL--DG--MFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~--~~--~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      |++|.+|.+++|||+|.|+.  +.  .++|+||||+++||||||||+..-.
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~   51 (240)
T d1gvkb_           1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL   51 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCSCC
T ss_pred             CCCCEECCCCCCCEEEEEEEecCCccceEEEEEEEeCCEEEECcccccccC
Confidence            58999999999999999954  22  3689999999999999999996543

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.01  E-value=4.7e-11  Score=107.42  Aligned_cols=40  Identities=48%  Similarity=0.884  Sum_probs=37.3

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      +++|..|.+++|||+|+|.    ++|+||||++|||||||||+.
T Consensus         1 ~~gG~~~~~~~~Pw~v~l~----~~C~GtLIs~~~VLTaAhCv~   40 (223)
T d1os8a_           1 VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVS   40 (223)
T ss_dssp             CBSCEECCTTSSTTEEEET----TTEEEEEEETTEEEECGGGSS
T ss_pred             CCCCEECCCCCCCcEEEEe----ccEeEEEEeCCEEEEChhhcc
Confidence            5899999999999999995    679999999999999999983

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.5e-11  Score=109.71  Aligned_cols=49  Identities=49%  Similarity=0.781  Sum_probs=39.9

Q ss_pred             cCCcceeecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccCC
Q psy15063        314 RQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       314 ~~~~~~~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      ..+..||++|.++..++|||+|.|.   .++|+||||+++||||||||+...
T Consensus         8 ~~~~~ri~gG~~~~~~~~Pw~v~l~---~~~C~GtLIs~~~VLTaAhCv~~~   56 (259)
T d1elva1           8 FEEKQRIIGGSDADIKNFPWQVFFD---NPWAGGALINEYWVLTAAHVVEGN   56 (259)
T ss_dssp             C-----CBTCEECCGGGSTTEEEEE---TTEEEEEEEETTEEEECHHHHTTC
T ss_pred             CCCCCceECCEECCCCCcceEEEeC---CceEEEEEEeCCEEEecccccccc
Confidence            3445789999999999999999994   469999999999999999999543

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=98.99  E-value=7.6e-11  Score=106.37  Aligned_cols=45  Identities=38%  Similarity=0.726  Sum_probs=39.8

Q ss_pred             eecccccccccCCcEEEEccCC---eeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~---~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.++.+++|||+|.|+...   .++|+||||++|||||||||+..
T Consensus         1 i~gG~~~~~~e~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~   48 (241)
T d1m9ua_           1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDG   48 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESSSEEEEEEEEECSSSEEEECHHHHTT
T ss_pred             CCCCEECCCCCCCCEEEEEEeCCCccEEEEEEEEeCCEEEEChhhccc
Confidence            5789999999999999996532   57999999999999999999844

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=98.97  E-value=1.1e-10  Score=105.68  Aligned_cols=44  Identities=39%  Similarity=0.927  Sum_probs=39.0

Q ss_pred             eecccccccccCCcEEEEccC----CeeeeeeEEecCceeeecccccc
Q psy15063        320 IILGGEADIGEFPWQVAIALD----GMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~----~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      |+||.++..++|||+|.|+..    +.++|+|+||++|||||||||+-
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~   48 (237)
T d2f91a1           1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVY   48 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTT
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCCcEEEEEEEEeCCEEEECccccc
Confidence            579999999999999999652    34689999999999999999993

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.96  E-value=1.7e-10  Score=105.19  Aligned_cols=48  Identities=40%  Similarity=0.758  Sum_probs=42.4

Q ss_pred             cceeecccccccccCCcEEEEcc--C--CeeeeeeEEecCceeeeccccccC
Q psy15063        317 RRRIILGGEADIGEFPWQVAIAL--D--GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       317 ~~~~~~G~~~~~~~~p~~~~~~~--~--~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      ..|+++|..|..++|||+|.|..  +  +.++|+|+||+++||||||||+..
T Consensus        11 ~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhC~~~   62 (251)
T d1pytd_          11 SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISN   62 (251)
T ss_dssp             SSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT
T ss_pred             CCeEECCEECCCCCCCcEEEEEEEeCCCceeEEeEEEEcCCeEEEeeecccc
Confidence            57899999999999999999954  2  346999999999999999999954

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-10  Score=105.45  Aligned_cols=45  Identities=47%  Similarity=0.940  Sum_probs=39.9

Q ss_pred             eecccccccccCCcEEEEccC---CeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~---~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|.+|.+++|||+|.|+..   ..+.|+||||+++||||||||+..
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~   48 (243)
T d2fpza1           1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGP   48 (243)
T ss_dssp             CBSCEECCTTSCTTEEEEEECSSSCEEEEEEEEEETTEEEECHHHHCS
T ss_pred             CCCCEECCCCCCCcEEEEEECCCcccEEEEEEEEeCCEEEECceeccC
Confidence            579999999999999999663   346999999999999999999844

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=98.94  E-value=1.2e-10  Score=104.74  Aligned_cols=46  Identities=33%  Similarity=0.765  Sum_probs=39.6

Q ss_pred             eecccccccccCCcEEEEccC----CeeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIALD----GMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~----~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      +++|..|.+++|||+|.|+..    ..++|+||||+++||||||||+..-
T Consensus         1 iigG~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~   50 (236)
T d1elta_           1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSA   50 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSSC
T ss_pred             CCCCEECCCCCCCcEEEEEEccCCcceeEEEEEEEeCCEEEECeeecccc
Confidence            579999999999999999642    2468999999999999999998443

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.93  E-value=1.8e-10  Score=103.75  Aligned_cols=46  Identities=41%  Similarity=0.897  Sum_probs=39.7

Q ss_pred             eecccccccccCCcEEEEcc--CC--eeeeeeEEecCceeeeccccccCC
Q psy15063        320 IILGGEADIGEFPWQVAIAL--DG--MFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~--~~--~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      |+||.+|+.++|||+|.|..  .+  .+.|+||||+++||||||||+...
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~   50 (241)
T d1brup_           1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSS   50 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTT
T ss_pred             CCCCEECCCCCCCcEEEEEEcCCCcceEEeEEEEEeCCEEEECeEeeecc
Confidence            57999999999999999964  22  369999999999999999998443

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.3e-10  Score=102.69  Aligned_cols=43  Identities=47%  Similarity=0.785  Sum_probs=38.8

Q ss_pred             eecccccccccCCcEEEEccCCeeeeeeEEecCceeeeccccccC
Q psy15063        320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT  364 (417)
Q Consensus       320 ~~~G~~~~~~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~ds  364 (417)
                      |++|..|.+++|||+|.+...  +.|+||||+++||||||||+..
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~--~~C~GtLIs~~~VLTaAhC~~~   43 (240)
T d2qy0b1           1 IIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYP   43 (240)
T ss_dssp             CBSCEECCTTSSTTEEEEESS--SEEEEEEETTTEEEECHHHHSC
T ss_pred             CCCCEECCCCCcCCEEEECCC--ceEEEEEEcCCEEEEChHhCCC
Confidence            589999999999999998654  5799999999999999999954

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.9e-10  Score=104.85  Aligned_cols=40  Identities=45%  Similarity=0.772  Sum_probs=34.6

Q ss_pred             cccccccCCcEEEEcc----CCeeeeeeEEecCceeeecccccc
Q psy15063        324 GEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       324 ~~~~~~~~p~~~~~~~----~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      ..++.++|||+|+|+.    .+.++|+||||+++||||||||+.
T Consensus         9 ~~t~~~e~PW~v~i~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~   52 (287)
T d1rrka1           9 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT   52 (287)
T ss_dssp             TCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCC
T ss_pred             CCCCcCCCCCEEEEEEEECCCCcEEEEEEEecCCEEEEChhhee
Confidence            3467889999999965    346899999999999999999984

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.83  E-value=3.3e-08  Score=90.27  Aligned_cols=107  Identities=9%  Similarity=0.039  Sum_probs=64.5

Q ss_pred             ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCC--CCcEEEeeeEEEeCCCCCCCCCCCCeEEE
Q psy15063        128 DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNE--TSHVRRGVRRVLFHSHFHPFVLSNDIALL  205 (417)
Q Consensus       128 ~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~--~~~q~~~V~~i~iHP~Y~~~~~~nDIALL  205 (417)
                      .+|+|.||++++||||   +||+.+...  ....+.+..+.........  .....+.+..+..++.    ....|+|||
T Consensus        48 ~~GTGflI~~~~ILTa---~HVv~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~DiAll  118 (246)
T d1qtfa_          48 TLATGVLIGKNTIVTN---YHVAREAAK--NPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPY----GQGLDLAII  118 (246)
T ss_dssp             EEEEEEEEETTEEEEC---HHHHGGGTT--CGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTT----CTTSCCEEE
T ss_pred             ceEEEEEEeCCeEEEc---hhecccCCc--ceEEEEEecCCcceeeeeeecCCCceEEEEEEEecCC----cccCceEEE
Confidence            4799999999999999   999965322  2244556666543322111  1233444555555443    224699999


Q ss_pred             EecCCcCCCCceee---eeCCCCCCccCCCeEEEEEcCccC
Q psy15063        206 QLDRPVPLTGTIQP---VCLPQKGESFIGKRGHVVGWGVTS  243 (417)
Q Consensus       206 kL~~pv~~s~~v~P---icLp~~~~~~~~~~~~v~GWG~~~  243 (417)
                      +|+.+........+   +.+........+...++.||....
T Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~P~~~  159 (246)
T d1qtfa_         119 KLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNY  159 (246)
T ss_dssp             EECCCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTT
T ss_pred             EeccccccccccccCceeeccccccccCCCEEEEEeCCCCC
Confidence            99887654443322   223222222268889999997543

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1e-09  Score=98.24  Aligned_cols=38  Identities=42%  Similarity=0.762  Sum_probs=34.2

Q ss_pred             ccCCcEEEEccCCeeeeeeEEecCceeeeccccccCCC
Q psy15063        329 GEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG  366 (417)
Q Consensus       329 ~~~p~~~~~~~~~~~~Cggsli~~~~vLtaAhC~dsGg  366 (417)
                      +..||+|.|+.++.++|+||||++|||||||||+....
T Consensus         1 ~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~   38 (228)
T d1sgfa_           1 NSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKY   38 (228)
T ss_dssp             CCCTTEEEEECTTSCCEEEEECSSSEEEECGGGCCSCC
T ss_pred             CCCCcEEEEEECCcEEEEEEEEcCCEEEeCHHHccCCc
Confidence            35799999999999999999999999999999996543

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.68  E-value=3.7e-09  Score=94.92  Aligned_cols=38  Identities=42%  Similarity=0.915  Sum_probs=31.7

Q ss_pred             cCCcEEEEcc--CC--eeeeeeEEecCceeeeccccccCCCc
Q psy15063        330 EFPWQVAIAL--DG--MFFCGGALLNEHFVLTAAHCIMTGGP  367 (417)
Q Consensus       330 ~~p~~~~~~~--~~--~~~Cggsli~~~~vLtaAhC~dsGgP  367 (417)
                      .|||+|+|+.  .+  .|.|+||||++|||||||||+....+
T Consensus         1 ~~PW~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~   42 (232)
T d1fona_           1 SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRT   42 (232)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCTTSC
T ss_pred             CCccEEEEEEeCCCceEEEEEEEEecCCEEEEChhhccCCCc
Confidence            4899999964  33  46999999999999999999966554

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.39  E-value=4.9e-07  Score=78.22  Aligned_cols=41  Identities=24%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecccchhHH
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI  409 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs~~~~WI  409 (417)
                      ||||||+.  +++  ++||+|.| .+|. ......+|++|+.++++.
T Consensus       136 dSGGPv~~--~~~--~vGi~sgg-~~~~-~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         136 DSGGSLFA--GST--ALGLTSGG-SGNC-RTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             CTTCEEEE--TTE--EEEEEEEE-EEET-TTEEEEEEEEHHHHHHHH
T ss_pred             CcCCeeEE--CCE--EEEEEEEe-cCCC-CCCceEEEEEHHHHHHHh
Confidence            99999997  666  89999999 4443 255578999998887765

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.29  E-value=1e-06  Score=76.39  Aligned_cols=35  Identities=26%  Similarity=0.448  Sum_probs=25.1

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecc
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVS  403 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs  403 (417)
                      ||||||+.  +++  ++||++.+...|.  .....+|+.|.
T Consensus       140 dSGGPv~~--~~~--~vGi~~~g~~~~~--~~~~~~~~Pi~  174 (185)
T d2qaaa1         140 DSGGPLYS--GTR--AIGLTSGGSGNCS--SGGTTFFQPVT  174 (185)
T ss_dssp             CTTCEEEE--TTE--EEEEEEEEEEETT--TEEEEEEEEHH
T ss_pred             cccceeEE--CCE--EEEEEEEeecCCC--CCceEEEEEHH
Confidence            99999997  666  9999999833333  44456677654

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=98.20  E-value=3.8e-07  Score=83.44  Aligned_cols=31  Identities=39%  Similarity=0.637  Sum_probs=26.3

Q ss_pred             EEEEccCCeeeeeeEEec------CceeeeccccccC
Q psy15063        334 QVAIALDGMFFCGGALLN------EHFVLTAAHCIMT  364 (417)
Q Consensus       334 ~~~~~~~~~~~Cggsli~------~~~vLtaAhC~ds  364 (417)
                      .+.+..++.++||||||+      ++||||||||+..
T Consensus        25 v~~~~~~g~~~CGGsLI~~~~~~~~~~VLTAAHCv~~   61 (263)
T d1arba_          25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMG   61 (263)
T ss_dssp             EEEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSCC
T ss_pred             EEEEecCCcEEEEEEEECCCCCCccceEEEchhhCCC
Confidence            356667889999999998      6799999999953

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.9e-05  Score=68.01  Aligned_cols=83  Identities=12%  Similarity=0.049  Sum_probs=51.6

Q ss_pred             cceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEe
Q psy15063        129 VCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL  207 (417)
Q Consensus       129 ~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL  207 (417)
                      .=+|.+|+++ +|||+   |||+.+.      ..+.|....          ...+..+-+..+|       ..|+|||++
T Consensus        43 ~GSGf~i~~~G~IlT~---~HVv~~~------~~i~V~~~~----------g~~~~a~vv~~d~-------~~dlall~~   96 (205)
T d1lcya2          43 NGSGFVVAADGLIVTN---AHVVADR------RRVRVRLLS----------GDTYEAVVTAVDP-------VADIATLRI   96 (205)
T ss_dssp             EEEEEEEETTTEEEEC---HHHHTTC------SEEEEECTT----------SCEEEEEEEEEET-------TTTEEEEEC
T ss_pred             ceEEEEEECCCeEEEe---chhhhhh------hhccccccc----------cccccceeeeeec-------ceeeEEEEe
Confidence            3588999987 99999   9999753      445554321          1233333333333       469999999


Q ss_pred             cCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       208 ~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      +.+-.    +.++-|........++.+++.|+..
T Consensus        97 ~~~~~----~~~l~l~~~~~~~~G~~v~~iG~P~  126 (205)
T d1lcya2          97 QTKEP----LPTLPLGRSADVRQGEFVVAMGSPF  126 (205)
T ss_dssp             CCSSC----CCCCCBCCGGGCCTTCEEEECCCTT
T ss_pred             cCCCC----CcEEEccccccCCCCCEEEEEECCc
Confidence            76543    2345554433222788888888754

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=97.92  E-value=1.2e-06  Score=76.94  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             cccCCcEEEEc-cCCeeeeeeEEecCceeeeccccccCCCc
Q psy15063        328 IGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIMTGGP  367 (417)
Q Consensus       328 ~~~~p~~~~~~-~~~~~~Cggsli~~~~vLtaAhC~dsGgP  367 (417)
                      ...+||.+.++ ..+...|.|+||+++||||||||+.....
T Consensus        14 ~~~~P~~~~~~i~~~~~~CsG~LI~~~~VLTaaHCv~~~~~   54 (215)
T d1p3ca_          14 TRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTAS   54 (215)
T ss_dssp             TTSTTGGGEEEEECSSCEEEEEEEETTEEEECHHHHEETTT
T ss_pred             CCCCCcEEEEEEEcCCeEEEEEEEeCCEEEECcceeccCCC
Confidence            46689987665 34567899999999999999999965443

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=97.91  E-value=1.6e-05  Score=68.99  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=17.7

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcC
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGV  386 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~  386 (417)
                      |||||++.. +++  ++||+|.+.
T Consensus       142 dSGGPv~~~-~g~--vvGI~sgg~  162 (198)
T d2h5ca1         142 DSGGSWITS-AGQ--AQGVMSGGN  162 (198)
T ss_dssp             CTTCEEECT-TCB--EEEEEEEEC
T ss_pred             cccccEEcC-CCE--EEEEEcccc
Confidence            999999953 666  999999875

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.00023  Score=62.18  Aligned_cols=84  Identities=15%  Similarity=0.094  Sum_probs=53.5

Q ss_pred             cceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEe
Q psy15063        129 VCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL  207 (417)
Q Consensus       129 ~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL  207 (417)
                      .-+|.+|+++ +|||+   +|.+.+.      ..+.|.+..          ...+...-+..++       .+|+|||++
T Consensus        37 ~GSGfvi~~~G~IlTn---~HVV~~~------~~i~v~~~~----------~~~~~~~~~~~~~-------~~Dlall~~   90 (210)
T d2qf3a1          37 LGSGVIMDQRGYIITN---KHVINDA------DQIIVALQD----------GRVFEALLVGSDS-------LTDLAVLKI   90 (210)
T ss_dssp             EEEEEECSTTCEEEEE---HHHHTTC------SEEEEECTT----------SCEEECEEEEEET-------TTTEEEEEC
T ss_pred             ceEEEEEECCceEEec---hhhcccc------ccccccccc----------ccceeeEEecccc-------ccchhheec
Confidence            5899999977 99999   9999653      556665431          1233344344443       479999999


Q ss_pred             cCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCcc
Q psy15063        208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVT  242 (417)
Q Consensus       208 ~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~~  242 (417)
                      ..+-.+.    +..+........+..++..|+...
T Consensus        91 ~~~~~~~----~~~~~~~~~~~~g~~v~~~G~p~~  121 (210)
T d2qf3a1          91 NATGGLP----TIPINARRVPHIGDVVLAIGNPYN  121 (210)
T ss_dssp             CCSSCCC----CCCCCTTCCCCTTBEEEEEECGGG
T ss_pred             ccccccc----ccccccccccccceEEEEeccccc
Confidence            8765422    233322222227889999998643

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=0.00014  Score=64.66  Aligned_cols=84  Identities=11%  Similarity=-0.000  Sum_probs=51.7

Q ss_pred             cceEEEeeCC-eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEe
Q psy15063        129 VCAVRIEFEK-VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL  207 (417)
Q Consensus       129 ~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL  207 (417)
                      ..+|.+|+++ +|||+   +|++.+.      ..+.|....          ......+-+...       ...|+|||++
T Consensus        57 ~GSGfiI~~~G~IlTn---~HVv~~~------~~~~v~~~~----------~~~~~a~v~~~~-------~~~dlall~v  110 (228)
T d1l1ja_          57 LGSGFIFDPEGYILTN---YHVVGGA------DNITVTMLD----------GSKYDAEYIGGD-------EELDIAVIKI  110 (228)
T ss_dssp             EEEEEEEETTTEEEEE---HHHHSSC------SSCEEECTT----------SCEEEBCCCEEE-------TTTTEEEEEB
T ss_pred             ceEEEEeecCceEEee---ccccccc------ccceEEeec----------ceeEeEEEeeec-------ccccceeeEe
Confidence            6799999987 99999   9999754      445554321          111211111111       2479999999


Q ss_pred             cCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       208 ~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      ..+-.   .+.++-|........|+.+++.|+..
T Consensus       111 ~~~~~---~~~~l~l~~s~~~~~G~~V~aiG~P~  141 (228)
T d1l1ja_         111 KASDK---KFPYLEFGDSDKVKIGEWAIAIGNPL  141 (228)
T ss_dssp             CCSSS---CCCCCEECCGGGCCTTCEEEEEECTT
T ss_pred             ecCCC---CCceEEccCccccccCCcEEEEECCC
Confidence            75432   23355554432222799999999864

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=0.00022  Score=62.72  Aligned_cols=89  Identities=13%  Similarity=0.062  Sum_probs=50.2

Q ss_pred             cceEEEeeCC-eEEeeccceeeecCCCCC---CCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEE
Q psy15063        129 VCAVRIEFEK-VNLARKVGGVCDIDQLRD---TPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIAL  204 (417)
Q Consensus       129 ~C~GtLIs~~-~VLTA~~~A~Cv~~~~~~---~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIAL  204 (417)
                      ..+|.+|+++ +|||+   ||++.+....   .....+.|.+..          ...+...-+...|       ..||||
T Consensus        27 ~GSGfvi~~~G~IlTn---~HVV~~~~~~~~~~~~~~i~v~~~d----------g~~~~a~vi~~d~-------~~DlAl   86 (221)
T d2z9ia2          27 EGSGIILSAEGLILTN---NHVIAAAAKPPLGSPPPKTTVTFSD----------GRTAPFTVVGADP-------TSDIAV   86 (221)
T ss_dssp             EEEEEECCTTSEEEEC---HHHHHHHHCCC------EEEEEETT----------SCEECCEEEEEET-------TTTEEE
T ss_pred             ceEEEEEECCCEEEEc---HHHhhccccccccccCceEEEEcCC----------ceeeeeeeEeecc-------ccceee
Confidence            6799999988 99999   9998532111   122334454422          1222333222222       469999


Q ss_pred             EEecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        205 LQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       205 LkL~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      |++..+.....   +..+...... .+....+.|+..
T Consensus        87 l~~~~~~~~~~---~~~~~~~~~~-~g~~v~~~g~p~  119 (221)
T d2z9ia2          87 VRVQGVSGLTP---ISLGSSSDLR-VGQPVLAIGSPL  119 (221)
T ss_dssp             EECCSCCSCCC---CEECCGGGCC-TTCEEEEEECGG
T ss_pred             eeeccccccee---eccccccccc-cCceeeeeeccC
Confidence            99998764332   1122222112 788999998764

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.001  Score=59.71  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=54.3

Q ss_pred             cceEEEeeCC--eEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEE
Q psy15063        129 VCAVRIEFEK--VNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ  206 (417)
Q Consensus       129 ~C~GtLIs~~--~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLk  206 (417)
                      .=+|.+|+++  +|||.   +|.+.+.      ..+.|.+..          ...+...-+...+       ..|+|||+
T Consensus        77 ~GSG~iI~~~~g~IlTn---~HVv~~~------~~~~v~~~~----------~~~~~a~~~~~d~-------~~dlavl~  130 (249)
T d1ky9a2          77 LGSGVIIDADKGYVVTN---NHVVDNA------TVIKVQLSD----------GRKFDAKMVGKDP-------RSDIALIQ  130 (249)
T ss_dssp             EEEEEEEETTTTEEEEE---HHHHTTE------EEEEEEETT----------SCEEEEEEEEEET-------TTTEEEEE
T ss_pred             cccEEEEeccCceEEee---ccccccc------eeeeeeecc----------cccccceeeEecc-------chhhceee
Confidence            5689999864  99999   9998642      555665542          1333444444433       36999999


Q ss_pred             ecCCcCCCCceeeeeCCCCCCccCCCeEEEEEcCc
Q psy15063        207 LDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGV  241 (417)
Q Consensus       207 L~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG~  241 (417)
                      ++.+-.    +.|+.|...+....|+.+++.|+-.
T Consensus       131 i~~~~~----~~~~~l~~~~~~~~G~~v~aiG~P~  161 (249)
T d1ky9a2         131 IQNPKN----LTAIKMADSDALRVGDYTVAIGNPF  161 (249)
T ss_dssp             ESSCCS----CCCCCBCCGGGCCTTCEEEEEECTT
T ss_pred             eccccc----ceEEEcCCcCcCCcCCEEEEEeccc
Confidence            986543    3456665443333799999999753

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=97.37  E-value=0.0013  Score=56.47  Aligned_cols=93  Identities=13%  Similarity=0.013  Sum_probs=51.4

Q ss_pred             ccceEEEeeCCeEEeeccceeeecCCCCCCCccceEEEeceecCCCCCCCCcEEEeeeEEEeCCCCCCCCCCCCeEEEEe
Q psy15063        128 DVCAVRIEFEKVNLARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQL  207 (417)
Q Consensus       128 ~~C~GtLIs~~~VLTA~~~A~Cv~~~~~~~~~~~~~V~lG~~~~~~~~~~~~q~~~V~~i~iHP~Y~~~~~~nDIALLkL  207 (417)
                      ..|.|..|..+++||+   +|.+...       .-.+.++.......   ..........++..     ....|||||+|
T Consensus        23 ~~g~gl~v~g~~~l~~---~H~~~~~-------~~~i~~~~~~~~~~---~~~~~~~~~~v~~~-----d~~~Dlall~l   84 (199)
T d2bhga1          23 AICCATGVFGTAYLVP---RHLFAEK-------YDKIMLDGRAMTDS---DYRVFEFEIKVKGQ-----DMLSDAALMVL   84 (199)
T ss_dssp             EEEEEEEEEBTEEEEE---HHHHTSC-------CSEEEETTEEECGG---GEEEECCEECCSSS-----CEECSEEEEEE
T ss_pred             EEeEEEEEECCEEEEC---CcEeecC-------CCEEEEeeeEEEEE---eccceEEEEEEEec-----CCCccEEEEEc
Confidence            3799999999999999   9988542       12233333222111   11111111112221     23579999999


Q ss_pred             cCCcCCCCceeeeeCCCCCCccCCCeEEEEEcC
Q psy15063        208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWG  240 (417)
Q Consensus       208 ~~pv~~s~~v~PicLp~~~~~~~~~~~~v~GWG  240 (417)
                      +....|.+....  ++.......++.+.+.|+.
T Consensus        85 ~~~~~~~~~~~~--~~~~~~~~~g~~v~~ig~p  115 (199)
T d2bhga1          85 HRGNKVRDITKH--FRDTARMKKGTPVVGVVNN  115 (199)
T ss_dssp             SSSCCBCCCGGG--BCSSCEECTTCEEEEEEEE
T ss_pred             CCCCcCCccccc--ccccccccccceEEEEEcC
Confidence            876555443322  2222222268888888875

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.34  E-value=2.4e-05  Score=68.63  Aligned_cols=38  Identities=16%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             cccCCcEEEE--c---cCCeeeeeeEEecCceeeeccccccCC
Q psy15063        328 IGEFPWQVAI--A---LDGMFFCGGALLNEHFVLTAAHCIMTG  365 (417)
Q Consensus       328 ~~~~p~~~~~--~---~~~~~~Cggsli~~~~vLtaAhC~dsG  365 (417)
                      ..++||.+..  .   .++.+.|.|+||++++|||||||++.+
T Consensus        14 ~~~~p~~~v~~i~~~~~~~~~~cTG~lI~~~~vLTAaHcv~~~   56 (216)
T d2o8la1          14 TTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDAT   56 (216)
T ss_dssp             TTSGGGTTEEEEEEEETTEEEEEEEEEEETTEEEECHHHHHTT
T ss_pred             CCcCchheEEEEEEEcCCCCEEEEEEEEeCCEEEEeeeeeccC
Confidence            4466776533  2   245689999999999999999999543

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.32  E-value=4.4e-05  Score=68.34  Aligned_cols=54  Identities=20%  Similarity=0.346  Sum_probs=41.0

Q ss_pred             CccccCCcceeecccccccccCCcEE--EEccCCeeeeeeEEecCceeeecccccc
Q psy15063        310 GTTYRQPRRRIILGGEADIGEFPWQV--AIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       310 ~~~~~~~~~~~~~G~~~~~~~~p~~~--~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      ......+..++..-......++||.+  .|..++..+|.|+||++++|||||||++
T Consensus        20 ~~~~~~~~~~~~~v~~~~~~~~p~~~v~~i~~~g~~~gTG~lI~~~~ILTa~Hvv~   75 (242)
T d1agja_          20 VNAFNLPKELFSKVDEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAK   75 (242)
T ss_dssp             SCGGGSCTTTEEECCTTGGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHG
T ss_pred             CChhHcChHHhhhccccccccCCcccEEEEEeCCCccEEEEEEeCCEEEEcccEec
Confidence            33344444555555667778899985  5666788899999999999999999993

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=96.89  E-value=0.0024  Score=56.07  Aligned_cols=43  Identities=23%  Similarity=0.469  Sum_probs=32.3

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCccccCCCCeEEEecc-cchhHHhhh
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVS-EYIRWIHVN  412 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C~~~~~~p~vyt~Vs-~~~~WI~~~  412 (417)
                      +|||||+-..+|+  ++||.+.+..     ...-.+|+-|. .|.++|.+.
T Consensus       148 nSGGPlvd~~dG~--VVGIhs~~~~-----~~~~n~~~~i~~~~~~~l~~~  191 (219)
T d1lvmb_         148 QCGSPLVSTRDGF--IVGIHSASNF-----TNTNNYFTSVPKNFMELLTNQ  191 (219)
T ss_dssp             CTTCEEEETTTCC--EEEEEEEEET-----TSSSEEEEECCTTHHHHHHCG
T ss_pred             CCCCceEEcCCCE--EEEEEEeeec-----ccceEEEEecCHHHHHHHhhc
Confidence            8999999866788  9999998732     12345788884 488888765

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.71  E-value=0.0028  Score=56.48  Aligned_cols=39  Identities=18%  Similarity=0.342  Sum_probs=32.4

Q ss_pred             ccccccCCcEE--EEccCCeeeeeeEEecCceeeecccccc
Q psy15063        325 EADIGEFPWQV--AIALDGMFFCGGALLNEHFVLTAAHCIM  363 (417)
Q Consensus       325 ~~~~~~~p~~~--~~~~~~~~~Cggsli~~~~vLtaAhC~d  363 (417)
                      -.+..++||.+  .+...+...|.|++|++++||||+||+.
T Consensus        28 v~d~~~~p~~~v~~i~~~g~~~GTGflI~~~~ILTa~HVv~   68 (246)
T d1qtfa_          28 ITDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAR   68 (246)
T ss_dssp             CSCCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHG
T ss_pred             ecccccCccccEEEEEeCCCceEEEEEEeCCeEEEchhecc
Confidence            44566788854  6677888999999999999999999993

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=95.09  E-value=0.0038  Score=52.13  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=25.3

Q ss_pred             Ceeeee-eEEe---cCceeeeccccccCCCceEEeeCCe
Q psy15063        341 GMFFCG-GALL---NEHFVLTAAHCIMTGGPLTFEQDGY  375 (417)
Q Consensus       341 ~~~~Cg-gsli---~~~~vLtaAhC~dsGgPL~~~~~g~  375 (417)
                      +.+.|- |.++   +++|+||||||++.+..+....+++
T Consensus        10 ~~~~Ct~Gf~v~~~g~~~ilTAaHCv~~~~~~~~~~~~~   48 (187)
T d1hpga_          10 GGSRCSAAFNVTKGGARYFVTAGHCTNISANWSASSGGS   48 (187)
T ss_dssp             TTEEEECCEEEEETTEEEEEECHHHHTTCSEEESSTTCC
T ss_pred             CCCeEeeeEEEEcCCCcEEEEchhcCCCCCeeEECCCCE
Confidence            346785 6666   5689999999998887766544444

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=90.57  E-value=2.5  Score=34.72  Aligned_cols=22  Identities=36%  Similarity=0.400  Sum_probs=18.3

Q ss_pred             cCCCceEEeeCCeEEEEeEEEEcCCCc
Q psy15063        363 MTGGPLTFEQDGYHVLAGIVSYGVTGC  389 (417)
Q Consensus       363 dsGgPL~~~~~g~~~l~GI~S~g~~~C  389 (417)
                      +.|+||+.  +++  ++||.+.| .++
T Consensus       146 ~cg~~~~~--~~~--i~G~h~~g-~~~  167 (180)
T d1cqqa_         146 YCGGVLYK--IGQ--VLGIHVGG-NGR  167 (180)
T ss_dssp             CTTCEEEE--TTE--EEEEEEEE-CSS
T ss_pred             ccCCeEEE--CCC--EEEEEecc-CCC
Confidence            78999997  777  99999988 444