Psyllid ID: psy15112


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70---
MERGSVDLAIGKSQELDFWLENLIHAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPAADADTEDASRMEEVD
ccccccEEEccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
cccccEEEEEccccEccccccHHHHHHHHHHHHHHcccccccccccccccccHcccccccccHHHccccHccc
mergsvdlaigkSQELDFWLENLIHAARIHRMIKLglgiedddepapseevkseelpaadadtedasrmeevd
mergsvdlaigksqeLDFWLENLIHAARIHRMIKLGLGIEDDDEPAPseevkseelpaadadtedasrmeevd
MERGSVDLAIGKSQELDFWLENLIHAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPAADADTEDASRMEEVD
********AIGKSQELDFWLENLIHAARIHRMIKLGLGI**********************************
*****VD*AIGKSQELDFWLENLIHAARIHRMIKLGLGIEDD***********************ASRMEEV*
MERGSVDLAIGKSQELDFWLENLIHAARIHRMIKLGLGIEDD*******************************
***GSVDLAIGKSQELDFWLENLIHAARIHRMIKLGLGIE*********************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MERGSVDLAIGKSQELDFWLENLIHAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPAADADTEDASRMEEVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query73 2.2.26 [Sep-21-2011]
O02192716 Heat shock protein 83 OS= N/A N/A 0.671 0.068 0.607 1e-08
P02828717 Heat shock protein 83 OS= yes N/A 0.671 0.068 0.588 4e-08
P04809717 Heat shock protein 83 OS= yes N/A 0.671 0.068 0.607 5e-08
O02705733 Heat shock protein HSP 90 yes N/A 0.657 0.065 0.58 1e-06
Q76LV2733 Heat shock protein HSP 90 yes N/A 0.657 0.065 0.58 1e-06
Q9GKX7733 Heat shock protein HSP 90 yes N/A 0.657 0.065 0.58 1e-06
O57521725 Heat shock protein HSP 90 yes N/A 0.657 0.066 0.576 1e-06
Q4R4P1733 Heat shock protein HSP 90 N/A N/A 0.657 0.065 0.56 2e-06
P07900732 Heat shock protein HSP 90 yes N/A 0.657 0.065 0.56 2e-06
A5A6K9733 Heat shock protein HSP 90 yes N/A 0.657 0.065 0.56 2e-06
>sp|O02192|HSP83_DROAV Heat shock protein 83 OS=Drosophila auraria GN=Hsp83 PE=3 SV=1 Back     alignment and function desciption
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%), Gaps = 2/51 (3%)

Query: 24  IHAARIHRMIKLGLGIEDDDEPAPSEEVKSE-ELPAADADTEDASRMEEVD 73
           +HA+RI+RMIKLGLGI D+DEP  +E+ +S  + P+   DTEDAS MEEVD
Sbjct: 667 VHASRIYRMIKLGLGI-DEDEPMTTEDAQSAGDAPSLVEDTEDASHMEEVD 716




Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
Drosophila auraria (taxid: 47315)
>sp|P02828|HSP83_DROME Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1 Back     alignment and function description
>sp|P04809|HSP83_DROPS Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2 Back     alignment and function description
>sp|O02705|HS90A_PIG Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3 Back     alignment and function description
>sp|Q76LV2|HS90A_BOVIN Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3 Back     alignment and function description
>sp|Q9GKX7|HS90A_HORSE Heat shock protein HSP 90-alpha OS=Equus caballus GN=HSP90AA1 PE=2 SV=2 Back     alignment and function description
>sp|O57521|HS90B_DANRE Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=1 SV=2 Back     alignment and function description
>sp|Q4R4P1|HS90A_MACFA Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3 Back     alignment and function description
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5 Back     alignment and function description
>sp|A5A6K9|HS90A_PANTR Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query73
311976565 722 heat shock protein 90 [Panonychus citri] 0.684 0.069 0.7 1e-11
395459672 722 heat shock protein 90 [Frankliniella occ 0.684 0.069 0.66 1e-10
401834501 722 heat shock protein 90 [Frankliniella occ 0.684 0.069 0.66 2e-10
383864867 718 PREDICTED: heat shock protein 83-like [M 0.657 0.066 0.7 4e-10
443721700 719 hypothetical protein CAPTEDRAFT_159573 [ 0.671 0.068 0.66 1e-09
198250392 720 heat shock protein 90 [Bemisia tabaci] 0.671 0.068 0.705 1e-09
70997669 720 90 kDa heat shock protein [Bemisia tabac 0.671 0.068 0.705 1e-09
295393298 720 heat shock protein 90 [Bemisia tabaci] 0.671 0.068 0.705 2e-09
295393292 720 heat shock protein 90 [Bemisia tabaci] 0.671 0.068 0.705 2e-09
70997651 720 90 kDa heat shock protein [Bemisia tabac 0.671 0.068 0.705 2e-09
>gi|311976565|gb|ADQ20111.1| heat shock protein 90 [Panonychus citri] Back     alignment and taxonomy information
 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 41/50 (82%)

Query: 24  IHAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPAADADTEDASRMEEVD 73
           +HAARIHRMIKLGLGI++DD P   ++VK  E+PA  AD EDASRMEEVD
Sbjct: 673 VHAARIHRMIKLGLGIDEDDVPETKDDVKDVEMPALQADAEDASRMEEVD 722




Source: Panonychus citri

Species: Panonychus citri

Genus: Panonychus

Family: Tetranychidae

Order:

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395459672|gb|AFN65689.1| heat shock protein 90 [Frankliniella occidentalis] Back     alignment and taxonomy information
>gi|401834501|gb|AFQ23182.1| heat shock protein 90 [Frankliniella occidentalis] gi|442769473|gb|AGC70810.1| heat shock protein 90 [Frankliniella occidentalis] Back     alignment and taxonomy information
>gi|383864867|ref|XP_003707899.1| PREDICTED: heat shock protein 83-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|443721700|gb|ELU10916.1| hypothetical protein CAPTEDRAFT_159573 [Capitella teleta] Back     alignment and taxonomy information
>gi|198250392|gb|ACH85198.1| heat shock protein 90 [Bemisia tabaci] Back     alignment and taxonomy information
>gi|70997669|gb|AAZ17403.1| 90 kDa heat shock protein [Bemisia tabaci] Back     alignment and taxonomy information
>gi|295393298|gb|ADG03469.1| heat shock protein 90 [Bemisia tabaci] Back     alignment and taxonomy information
>gi|295393292|gb|ADG03466.1| heat shock protein 90 [Bemisia tabaci] Back     alignment and taxonomy information
>gi|70997651|gb|AAZ17402.1| 90 kDa heat shock protein [Bemisia tabaci] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query73
FB|FBgn0001233717 Hsp83 "Heat shock protein 83" 0.671 0.068 0.588 6.3e-09
UNIPROTKB|F1S9Z1252 HSP90AA1 "Heat shock protein H 0.753 0.218 0.551 1.3e-08
UNIPROTKB|F1PGY1630 HSP90AA1 "Uncharacterized prot 0.753 0.087 0.568 3.8e-08
UNIPROTKB|Q76LV2733 HSP90AA1 "Heat shock protein H 0.753 0.075 0.551 9.8e-08
UNIPROTKB|O02705733 HSP90AA1 "Heat shock protein H 0.753 0.075 0.551 9.8e-08
UNIPROTKB|Q9GKX7733 HSP90AA1 "Heat shock protein H 0.753 0.075 0.551 9.8e-08
ZFIN|ZDB-GENE-990415-95725 hsp90ab1 "heat shock protein 9 0.657 0.066 0.576 1.2e-07
UNIPROTKB|F1NVN4583 F1NVN4 "Uncharacterized protei 0.753 0.094 0.534 1.5e-07
UNIPROTKB|P11501728 HSP90AA1 "Heat shock protein H 0.753 0.075 0.534 2e-07
UNIPROTKB|P07900732 HSP90AA1 "Heat shock protein H 0.753 0.075 0.534 2.1e-07
FB|FBgn0001233 Hsp83 "Heat shock protein 83" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 144 (55.7 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query:    24 IHAARIHRMIKLGLGIEDDDEPAPSEEVKSE-ELPAADADTEDASRMEEVD 73
             +HA+RI+RMIKLGLGI D+DEP  +++ +S  + P+   DTEDAS MEEVD
Sbjct:   668 VHASRIYRMIKLGLGI-DEDEPMTTDDAQSAGDAPSLVEDTEDASHMEEVD 717




GO:0007283 "spermatogenesis" evidence=IMP
GO:0042623 "ATPase activity, coupled" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS;IDA;NAS
GO:0009408 "response to heat" evidence=IEP;ISS
GO:0006457 "protein folding" evidence=ISS;TAS
GO:0008293 "torso signaling pathway" evidence=NAS
GO:0008595 "anterior/posterior axis specification, embryo" evidence=TAS
GO:0007098 "centrosome cycle" evidence=IMP
GO:0005813 "centrosome" evidence=IDA
GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP;TAS
GO:0007465 "R7 cell fate commitment" evidence=TAS
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0007015 "actin filament organization" evidence=IMP
GO:0005524 "ATP binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0009631 "cold acclimation" evidence=IEP
GO:0005811 "lipid particle" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0019094 "pole plasm mRNA localization" evidence=IMP
GO:0048477 "oogenesis" evidence=IGI
GO:0010529 "negative regulation of transposition" evidence=IMP
GO:0005705 "polytene chromosome interband" evidence=IDA
GO:0048471 "perinuclear region of cytoplasm" evidence=IDA
UNIPROTKB|F1S9Z1 HSP90AA1 "Heat shock protein HSP 90-alpha" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGY1 HSP90AA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q76LV2 HSP90AA1 "Heat shock protein HSP 90-alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O02705 HSP90AA1 "Heat shock protein HSP 90-alpha" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GKX7 HSP90AA1 "Heat shock protein HSP 90-alpha" [Equus caballus (taxid:9796)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-95 hsp90ab1 "heat shock protein 90, alpha (cytosolic), class B member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVN4 F1NVN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P11501 HSP90AA1 "Heat shock protein HSP 90-alpha" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P07900 HSP90AA1 "Heat shock protein HSP 90-alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P02828HSP83_DROMENo assigned EC number0.58820.67120.0683yesN/A
P07900HS90A_HUMANNo assigned EC number0.560.65750.0655yesN/A
Q7PT10HSP83_ANOGANo assigned EC number0.55170.65750.0666yesN/A
Q9GKX7HS90A_HORSENo assigned EC number0.580.65750.0654yesN/A
P11501HS90A_CHICKNo assigned EC number0.560.65750.0659yesN/A
O57521HS90B_DANRENo assigned EC number0.57690.65750.0662yesN/A
O02705HS90A_PIGNo assigned EC number0.580.65750.0654yesN/A
P34058HS90B_RATNo assigned EC number0.58820.64380.0649yesN/A
P11499HS90B_MOUSENo assigned EC number0.58820.64380.0649yesN/A
Q76LV2HS90A_BOVINNo assigned EC number0.580.65750.0654yesN/A
Q18688HSP90_CAEELNo assigned EC number0.53840.63010.0655yesN/A
P04809HSP83_DROPSNo assigned EC number0.60780.67120.0683yesN/A
A5A6K9HS90A_PANTRNo assigned EC number0.560.65750.0654yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query73
pfam00183529 pfam00183, HSP90, Hsp90 protein 3e-08
PTZ00272701 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp 1e-04
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information
 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 25  HAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPAADADTEDASRMEEVD 73
            A+RI+RMIKLGL I++D+E    +E    E      +  + S+MEEVD
Sbjct: 481 FASRIYRMIKLGLSIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEEVD 529


Length = 529

>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 73
PF00183531 HSP90: Hsp90 protein; InterPro: IPR001404 Molecula 98.97
KOG0020|consensus785 98.84
KOG0019|consensus656 98.55
PTZ00272701 heat shock protein 83 kDa (Hsp83); Provisional 98.46
PTZ00130814 heat shock protein 90; Provisional 97.51
PRK05218613 heat shock protein 90; Provisional 95.42
PRK14083601 HSP90 family protein; Provisional 93.29
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 92.97
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell [] Back     alignment and domain information
Probab=98.97  E-value=3.5e-10  Score=88.64  Aligned_cols=66  Identities=32%  Similarity=0.432  Sum_probs=37.3

Q ss_pred             chhhhceeecCCCCCc-hhHHHHHHHHHHccCCCCCCCCCCCCcccc-cCCCCCCCCCCcccccccccC
Q psy15112          7 DLAIGKSQELDFWLEN-LIHAARIHRMIKLGLGIEDDDEPAPSEEVK-SEELPAADADTEDASRMEEVD   73 (73)
Q Consensus         7 ~~~~tAlL~SGF~led-~~fA~RI~~ml~~~L~i~~~~~~~e~~~~~-~~e~p~~e~~~~~~s~~EevD   73 (73)
                      .|-++|+|+|||.|+| +.|++||++||+++|+++.+....+....+ .++.++.+... +++.+|+||
T Consensus       464 ~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~vd  531 (531)
T PF00183_consen  464 QLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDAEVEEEDEEEEEEEEEEEEEDK-EDSEMEEVD  531 (531)
T ss_dssp             HHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STTTTTTGGG-GGG---------------SSS--
T ss_pred             HHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCCcccccccccccCCCCCCcCCC-cccccccCC
Confidence            4679999999999999 999999999999999999875543332211 11222222222 568888887



They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....

>KOG0020|consensus Back     alignment and domain information
>KOG0019|consensus Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query73
3q6m_A448 Crystal Structure Of Human Mc-Hsp90 In C2221 Space 5e-07
>pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group Length = 448 Back     alignment and structure

Iteration: 1

Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats. Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 2/50 (4%) Query: 25 HAARIHRMIKLGLGIEDDDEPA-PSEEVKSEELPAADADTEDASRMEEVD 73 HA RI+RMIKLGLGI++DD A + +EE+P + D +D SRMEEVD Sbjct: 394 HANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGD-DDTSRMEEVD 442

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query73
3q6m_A448 Heat shock protein HSP 90-alpha; three domains, tr 8e-10
3hjc_A444 Heat shock protein 83-1; sleeping sickness, struct 4e-04
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A Length = 448 Back     alignment and structure
 Score = 51.6 bits (124), Expect = 8e-10
 Identities = 25/49 (51%), Positives = 29/49 (59%)

Query: 25  HAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPAADADTEDASRMEEVD 73
           HA RI+RMIKLGLGI++DD  A        E        +D SRMEEVD
Sbjct: 394 HANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 442


>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major} Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query73
3q6m_A448 Heat shock protein HSP 90-alpha; three domains, tr 99.33
3hjc_A444 Heat shock protein 83-1; sleeping sickness, struct 98.55
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 98.14
1sf8_A126 Chaperone protein HTPG; four helix bundle dimeriza 98.1
2cge_A405 ATP-dependent molecular chaperone HSP82; chaperone 97.87
2cg9_A677 ATP-dependent molecular chaperone HSP82; chaperone 97.8
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 96.83
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A Back     alignment and structure
Probab=99.33  E-value=2.5e-13  Score=103.78  Aligned_cols=65  Identities=49%  Similarity=0.679  Sum_probs=29.8

Q ss_pred             hhhhceeecCCCCCc-hhHHHHHHHHHHccCCCCCCCCCCCCcc-cccCCCCCCCCCCcccccccccC
Q psy15112          8 LAIGKSQELDFWLEN-LIHAARIHRMIKLGLGIEDDDEPAPSEE-VKSEELPAADADTEDASRMEEVD   73 (73)
Q Consensus         8 ~~~tAlL~SGF~led-~~fA~RI~~ml~~~L~i~~~~~~~e~~~-~~~~e~p~~e~~~~~~s~~EevD   73 (73)
                      |-++|+|++||+|+| +.|++||++||++||||+++++.++++. .++.+.||++.++ +.++|++||
T Consensus       376 Lyd~AlL~~G~~l~DP~~f~~ri~~ll~~~L~id~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  442 (448)
T 3q6m_A          376 LYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDD-DTSRMEEVD  442 (448)
T ss_dssp             HHHHHHHHTTCCCSCHHHHHHHHHHHHHHTTC------------------------------------
T ss_pred             HHHhHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCccccccccccccccCCCCCCCCCc-chhhhhhhc
Confidence            568999999999999 9999999999999999998766544332 3456668888764 899999986



>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major} Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1 Back     alignment and structure
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae} Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query73
d1sf8a_115 Chaperone protein HtpG {Escherichia coli [TaxId: 5 97.33
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HSP90 C-terminal domain
superfamily: HSP90 C-terminal domain
family: HSP90 C-terminal domain
domain: Chaperone protein HtpG
species: Escherichia coli [TaxId: 562]
Probab=97.33  E-value=2.4e-05  Score=48.30  Aligned_cols=28  Identities=14%  Similarity=0.003  Sum_probs=25.6

Q ss_pred             chhhhceeecCCCCCc-hhHHHHHHHHHH
Q psy15112          7 DLAIGKSQELDFWLEN-LIHAARIHRMIK   34 (73)
Q Consensus         7 ~~~~tAlL~SGF~led-~~fA~RI~~ml~   34 (73)
                      .+-|+|+|.+||.++| ..|+.||+++|.
T Consensus        86 ~L~d~A~l~~G~~l~Dp~~f~~ri~~ll~  114 (115)
T d1sf8a_          86 LLLDQALLAERGTLEDPNLFIRRMNQLLV  114 (115)
T ss_dssp             HHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence            3678999999999999 999999999985